BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00023463
         (725 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   407   e-137
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo...   401   e-133
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   403   e-132
gb|KYP58848.1| Retrovirus-related Pol polyprotein from transposo...   341   e-114
gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subc...   334   e-104
gb|KYP49849.1| Retrovirus-related Pol polyprotein from transposo...   300   1e-99
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo...   312   3e-99
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc...   320   5e-99
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   321   3e-98
gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]     316   1e-97
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     318   3e-97
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc...   316   5e-97
gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sat...   316   8e-97
gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subc...   317   8e-97
emb|CAD39988.3| OSJNBb0045P24.6 [Oryza sativa Japonica Group]         313   8e-97
gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subc...   316   9e-97
gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Jap...   317   1e-96
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         317   1e-96
gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subc...   316   1e-96
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   314   2e-96

>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 565

 Score =  407 bits (1046), Expect = e-137
 Identities = 195/241 (80%), Positives = 218/241 (90%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           DSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVENQLEK IKILRS
Sbjct: 90  DSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLEKSIKILRS 149

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
           DRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N 
Sbjct: 150 DRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNL 209

Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
           WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAKVNIPI KKRKIGPK
Sbjct: 210 WGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRKIGPK 269

Query: 541 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACS 720
           TVDCVF+GYS +S TYRFLV NSEV EISNNII+ESRDAVFFENIFP+K+KLS+PV   S
Sbjct: 270 TVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMESRDAVFFENIFPLKNKLSKPVYDTS 329

Query: 721 S 723
           S
Sbjct: 330 S 330


>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 714

 Score =  401 bits (1031), Expect = e-133
 Identities = 192/241 (79%), Positives = 216/241 (89%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            DSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVENQLE+ IKILRS
Sbjct: 418  DSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRS 477

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N 
Sbjct: 478  DRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNL 537

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVW CLAKVNIPI KKRKIGPK
Sbjct: 538  WGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWWCLAKVNIPINKKRKIGPK 597

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACS 720
            TVDCVF+GYS +S TYRFLV NSEV EISNNII+ESRD VFFENIFP+K+KLS+PV   S
Sbjct: 598  TVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMESRDVVFFENIFPLKNKLSKPVYNTS 657

Query: 721  S 723
            S
Sbjct: 658  S 658


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 880

 Score =  403 bits (1036), Expect = e-132
 Identities = 192/241 (79%), Positives = 217/241 (90%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            DSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVENQLE+ IKILRS
Sbjct: 420  DSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRS 479

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N 
Sbjct: 480  DRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNL 539

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAKVNIPI KKRKIGPK
Sbjct: 540  WGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRKIGPK 599

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACS 720
            TVDCVF+GYS +S TYRFLV  SEV EISNNII+ESRDA+FFENIFP+K+KLS+PV   S
Sbjct: 600  TVDCVFLGYSLHSTTYRFLVIKSEVSEISNNIIMESRDAIFFENIFPLKNKLSKPVYDTS 659

Query: 721  S 723
            S
Sbjct: 660  S 660


>gb|KYP58848.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 396

 Score =  341 bits (874), Expect = e-114
 Identities = 170/242 (70%), Positives = 199/242 (82%), Gaps = 1/242 (0%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           DSN ++TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVENQLEK IKILR 
Sbjct: 55  DSNGIITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLEKSIKILRL 114

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
               EY+S+EM +F + H I++EVTP Y PQSNG+AERKNR LLDM+NAML+S GLP N 
Sbjct: 115 IEE-EYSSNEMGEFFETHDIIYEVTPPYVPQSNGIAERKNRILLDMINAMLISYGLPGNL 173

Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWG-CLAKVNIPIVKKRKIGP 537
           W EAL++AC  LNR+PYKNSDKTPYELWKN+KP LK+LKVWG  + +  IPI KKRKI P
Sbjct: 174 WEEALFTACHSLNRIPYKNSDKTPYELWKNRKPNLKYLKVWGPGVLQRCIPINKKRKISP 233

Query: 538 KTVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGAC 717
           KTVDCVF+GYS +S TYR LV NSEV +ISNNII+ES+D VF ENIFP+K+KLS+P+   
Sbjct: 234 KTVDCVFLGYSLHSTTYRILVINSEVAKISNNIIMESKDVVFLENIFPLKNKLSKPIYDT 293

Query: 718 SS 723
           SS
Sbjct: 294 SS 295


>gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1075

 Score =  334 bits (857), Expect = e-104
 Identities = 156/229 (68%), Positives = 183/229 (79%)
 Frame = +1

Query: 7    NHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDR 186
            N +LT+GG +YFITFIDD SKYCYVYL+  K   F+ FK +KAE ENQL+ KIKILRSDR
Sbjct: 404  NGILTKGGRRYFITFIDDCSKYCYVYLLRTKDEAFEHFKIFKAEAENQLDLKIKILRSDR 463

Query: 187  GGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWG 366
            GGEY S E + F + HGI+HE TP YSPQSNGVAERKNRTL ++VNAML +SGLP   WG
Sbjct: 464  GGEYLSIEFSKFHQEHGIIHETTPPYSPQSNGVAERKNRTLTNLVNAMLSNSGLPNYMWG 523

Query: 367  EALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTV 546
            EALY+AC +LNRVP K ++ TPYELWK +KP L FLKVWGCLAKVNIP+VKKRK+GPKTV
Sbjct: 524  EALYTACFVLNRVPAKGTEVTPYELWKGRKPNLNFLKVWGCLAKVNIPVVKKRKLGPKTV 583

Query: 547  DCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDK 693
            DCVF+GY+ NS  YRFLV  SE  E+  N ++ESRD  FFE+ FP+K K
Sbjct: 584  DCVFIGYAQNSLAYRFLVVKSETTEVRENTVMESRDTTFFEDTFPLKVK 632


>gb|KYP49849.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 262

 Score =  300 bits (767), Expect = 1e-99
 Identities = 148/209 (70%), Positives = 170/209 (81%), Gaps = 1/209 (0%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           D N V+TRG  +YFITFIDDFSKY YVYLI  KS LF+KFK YK E ENQLEK IKILR 
Sbjct: 51  DGNGVITRGRKKYFITFIDDFSKYFYVYLIIHKSELFEKFKVYKEEDENQLEKSIKILRY 110

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAML-LSSGLPKN 357
           D GGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKN TLLDM+N    LSSGLP N
Sbjct: 111 DTGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNCTLLDMINVTTRLSSGLPDN 170

Query: 358 CWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGP 537
            WGEAL++A  ILNR+PYK  DK PYELWKN+KP LK+LKVW CLAKVNIPI KKRKIGP
Sbjct: 171 LWGEALFTARHILNRIPYKILDKNPYELWKNRKPNLKYLKVWECLAKVNIPINKKRKIGP 230

Query: 538 KTVDCVFVGYSSNSPTYRFLVFNSEVPEI 624
           KT+DCVF+ YS +  T+RFLV NS+V +I
Sbjct: 231 KTLDCVFLRYSLHITTHRFLVINSKVAKI 259


>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
          Length = 679

 Score =  312 bits (800), Expect = 3e-99
 Identities = 144/230 (62%), Positives = 184/230 (80%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 239 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 298

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
           +RGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 299 NRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 358

Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
           WGEAL ++  +LNRVP +N +KTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 359 WGEALLTSNHVLNRVPNRNKNKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 418

Query: 541 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
           TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 419 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 468


>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1060

 Score =  320 bits (820), Expect = 5e-99
 Identities = 147/230 (63%), Positives = 187/230 (81%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 367  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 426

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 427  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 486

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 487  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 546

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP+++   I+ESRDA+FFE+ FPMKD
Sbjct: 547  TVDCVFLGYAYHSIAYRFLIVKSEVPDMNVGTIMESRDAIFFESFFPMKD 596


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  321 bits (823), Expect = 3e-98
 Identities = 147/230 (63%), Positives = 187/230 (81%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 460  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 519

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 520  DRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 579

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 580  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 639

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA+FFE+ FPMKD
Sbjct: 640  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPMKD 689


>gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1059

 Score =  316 bits (810), Expect = 1e-97
 Identities = 146/230 (63%), Positives = 184/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 608  EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 667

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 668  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 727

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 728  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 787

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 788  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 837


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  318 bits (816), Expect = 3e-97
 Identities = 147/230 (63%), Positives = 186/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 499  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 559  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W ++KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619  WGEALLTSNHVLNRVPNRNKDKTPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 679  TVDCVFLGYAYHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728


>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1151

 Score =  316 bits (810), Expect = 5e-97
 Identities = 146/230 (63%), Positives = 184/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 370  EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 429

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 430  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 489

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 490  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 549

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 550  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 599


>gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1198

 Score =  316 bits (810), Expect = 8e-97
 Identities = 146/230 (63%), Positives = 184/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 432  EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 491

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 492  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 551

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 552  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 611

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 612  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 661


>gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1235

 Score =  317 bits (811), Expect = 8e-97
 Identities = 146/230 (63%), Positives = 185/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEV+NQL++KIK LRS
Sbjct: 432  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVKNQLDRKIKRLRS 491

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 492  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTTGLPKAW 551

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 552  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 611

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 612  TVDCVFLGYAYHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 661


>emb|CAD39988.3| OSJNBb0045P24.6 [Oryza sativa Japonica Group]
          Length = 982

 Score =  313 bits (801), Expect = 8e-97
 Identities = 146/230 (63%), Positives = 182/230 (79%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           + N VLT+GG +YF+T IDD + +CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 304 EMNGVLTKGGKRYFMTLIDDATIFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 363

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
           DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 364 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLETTGLPKAW 423

Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
           WGEAL ++  +LNRVP  N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 424 WGEALLTSNHVLNRVPNINKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 483

Query: 541 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
           TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 484 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 533


>gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1210

 Score =  316 bits (810), Expect = 9e-97
 Identities = 146/230 (63%), Positives = 184/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 432  EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 491

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 492  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 551

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 552  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 611

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 612  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 661


>gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
 gb|AAW56890.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1274

 Score =  317 bits (811), Expect = 1e-96
 Identities = 146/230 (63%), Positives = 185/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 499  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            D GGE+ S+E   FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 559  DHGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFLV  SEV ++    I+ESRDA+FFE+ FPMKD
Sbjct: 679  TVDCVFLGYAHHSIAYRFLVVKSEVSDMHVGTIMESRDAIFFESFFPMKD 728


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  317 bits (812), Expect = 1e-96
 Identities = 147/230 (63%), Positives = 185/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 499  EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 559  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L++WGCLAKVN+PI KKRK+GPK
Sbjct: 619  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPK 678

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEV ++    IIESRDA FFE+ FPMKD
Sbjct: 679  TVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKD 728


>gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1249

 Score =  316 bits (810), Expect = 1e-96
 Identities = 146/230 (63%), Positives = 184/230 (80%)
 Frame = +1

Query: 1    DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
            + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 499  EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558

Query: 181  DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
            DRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 559  DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618

Query: 361  WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
            WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619  WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678

Query: 541  TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
            TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 679  TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1095

 Score =  314 bits (804), Expect = 2e-96
 Identities = 145/230 (63%), Positives = 183/230 (79%)
 Frame = +1

Query: 1   DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 180
           + N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRS
Sbjct: 292 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDETLDYFKIYKAEVENQLDRKIKRLRS 351

Query: 181 DRGGEYASDEMADFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 360
           DRGGE+ S+E   FC+ HGI+HE  P YSP+SNG+AERKNRTL D+VNAML ++GLPK  
Sbjct: 352 DRGGEFFSNEFDLFCEEHGIIHERKPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 411

Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 540
           WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 412 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 471

Query: 541 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKD 690
           TVDCVF+GY+ +S  YRFL+  SEVP++    I+ESRDA FFE+ FPMKD
Sbjct: 472 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 521