BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00022967
         (2073 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...  1012   0.0  
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...  1012   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...  1012   0.0  
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...  1008   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...  1006   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]        1006   0.0  
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...  1006   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...  1003   0.0  
ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabid...   994   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   959   0.0  
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             921   0.0  
gb|KZV47435.1| hypothetical protein F511_22511, partial [Dorcoce...   843   0.0  
dbj|GAU34810.1| hypothetical protein TSUD_394360 [Trifolium subt...   791   0.0  
dbj|GAU28864.1| hypothetical protein TSUD_293160 [Trifolium subt...   788   0.0  
gb|ACN78973.1| copia-type polyprotein [Glycine max] >gi|22501615...   786   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     744   0.0  
gb|PNX73691.1| copia-type reverse transcriptase-like protein, pa...   713   0.0  
gb|PHT36714.1| hypothetical protein CQW23_24414 [Capsicum baccatum]   717   0.0  
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       711   0.0  
gb|PKU78070.1| Retrovirus-related Pol polyprotein from transposo...   659   0.0  

>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 500/692 (72%), Positives = 567/692 (81%), Gaps = 2/692 (0%)
 Frame = -2

Query: 2072 NNNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 1896
            NNN  +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 251  NNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 310

Query: 1895 K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1719
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 311  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 368

Query: 1718 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1539
            VAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 369  VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 428

Query: 1538 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVR 1359
            +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVR
Sbjct: 429  SRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVR 488

Query: 1358 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1179
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 489  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 548

Query: 1178 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFC 999
            LFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 549  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 608

Query: 998  EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 819
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 609  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 668

Query: 818  PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 639
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 669  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 728

Query: 638  GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 459
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 729  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 788

Query: 458  XXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 279
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 789  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 847

Query: 278  GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 99
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 848  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 907

Query: 98   AGIDYDEVFAPVARLETIRLIISLAAQNKWKI 3
            AGIDYDEVFAPVARLET+RLIISLAAQN WKI
Sbjct: 908  AGIDYDEVFAPVARLETVRLIISLAAQNNWKI 939


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 500/692 (72%), Positives = 567/692 (81%), Gaps = 2/692 (0%)
 Frame = -2

Query: 2072 NNNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 1896
            NNN  +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 185  NNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 244

Query: 1895 K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1719
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 245  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 302

Query: 1718 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1539
            VAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 303  VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 362

Query: 1538 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVR 1359
            +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVR
Sbjct: 363  SRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVR 422

Query: 1358 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1179
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 423  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 482

Query: 1178 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFC 999
            LFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 483  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 542

Query: 998  EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 819
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 543  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 602

Query: 818  PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 639
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 603  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 662

Query: 638  GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 459
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 663  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 722

Query: 458  XXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 279
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 723  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 781

Query: 278  GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 99
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 782  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 841

Query: 98   AGIDYDEVFAPVARLETIRLIISLAAQNKWKI 3
            AGIDYDEVFAPVARLET+RLIISLAAQN WKI
Sbjct: 842  AGIDYDEVFAPVARLETVRLIISLAAQNNWKI 873


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 500/692 (72%), Positives = 567/692 (81%), Gaps = 2/692 (0%)
 Frame = -2

Query: 2072 NNNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 1896
            NNN  +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 251  NNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 310

Query: 1895 K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1719
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 311  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 368

Query: 1718 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1539
            VAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 369  VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 428

Query: 1538 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVR 1359
            +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVR
Sbjct: 429  SRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVR 488

Query: 1358 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1179
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 489  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 548

Query: 1178 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFC 999
            LFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 549  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 608

Query: 998  EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 819
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 609  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 668

Query: 818  PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 639
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 669  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 728

Query: 638  GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 459
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 729  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 788

Query: 458  XXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 279
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 789  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 847

Query: 278  GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 99
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 848  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 907

Query: 98   AGIDYDEVFAPVARLETIRLIISLAAQNKWKI 3
            AGIDYDEVFAPVARLET+RLIISLAAQN WKI
Sbjct: 908  AGIDYDEVFAPVARLETVRLIISLAAQNNWKI 939


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 1008 bits (2607), Expect = 0.0
 Identities = 487/672 (72%), Positives = 559/672 (83%), Gaps = 4/672 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEEK ++   +L+ +   + + ++ 
Sbjct: 274  YDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQKENH 333

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFISN
Sbjct: 334  KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 393

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+
Sbjct: 394  VYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDI 453

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
            A+CLKMCYK+ SWLWHLRFGHLNFGGLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ 
Sbjct: 454  AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKM 513

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
            SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS    
Sbjct: 514  SFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFE 573

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       ESGL IK MR+DRGGEFTSKEF ++CE NGIRR LTVPRSPQQNGV ER
Sbjct: 574  IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVER 633

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SH
Sbjct: 634  KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            LRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+++FDEE
Sbjct: 694  LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT-- 396
            GEWDW ++ +DYNF P FE+DE    E + EEP                + E + ERT  
Sbjct: 754  GEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR 810

Query: 395  -RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELA 219
             RS++ELYEVT+  ENLTLFCLFA+CEP++F++A + K W +AMDEEIKSI+KNDTWEL 
Sbjct: 811  FRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELT 870

Query: 218  QLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRL 39
             LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQR GIDYDEVFAPVARLET+RL
Sbjct: 871  SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRL 930

Query: 38   IISLAAQNKWKI 3
            IISLAAQNKWKI
Sbjct: 931  IISLAAQNKWKI 942


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 496/692 (71%), Positives = 565/692 (81%), Gaps = 2/692 (0%)
 Frame = -2

Query: 2072 NNNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 1896
            NNN  +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 240  NNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 299

Query: 1895 K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1719
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 300  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 357

Query: 1718 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1539
            VAV+GKG +LI+LK+G HQFISN+YYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 358  VAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 417

Query: 1538 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVR 1359
            +  I +VPM RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GL+LLSKK MVR
Sbjct: 418  SRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLDLLSKKAMVR 477

Query: 1358 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1179
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 478  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 537

Query: 1178 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFC 999
            LFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 538  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 597

Query: 998  EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 819
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 598  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 657

Query: 818  PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 639
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 658  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 717

Query: 638  GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 459
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 718  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 777

Query: 458  XXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 279
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 778  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 836

Query: 278  GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 99
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 837  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 896

Query: 98   AGIDYDEVFAPVARLETIRLIISLAAQNKWKI 3
            AGIDYDEVFAPVARLET+RLIISLAAQN WKI
Sbjct: 897  AGIDYDEVFAPVARLETVRLIISLAAQNNWKI 928


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 486/672 (72%), Positives = 559/672 (83%), Gaps = 4/672 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +  E+A+ VEEK ++   +L+ +   + + ++ 
Sbjct: 274  YDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAHYVEEKIQEEDMLLMASYKKDEQKENH 333

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFISN
Sbjct: 334  KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 393

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+
Sbjct: 394  VYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDI 453

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
            A+CLKMCYK+ SWLWHLRFGHLNFGGLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ 
Sbjct: 454  AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKM 513

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
            SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS    
Sbjct: 514  SFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFE 573

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       ESGL IK MR+DRGGEFTSKEF ++CE NGIRR LTVPRSPQQNGV ER
Sbjct: 574  IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVER 633

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SH
Sbjct: 634  KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            LRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+++FDEE
Sbjct: 694  LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT-- 396
            GEWDW ++ +DYNF P FE+DE    E + EEP                + E + ERT  
Sbjct: 754  GEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR 810

Query: 395  -RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELA 219
             RS++ELYEVT+  ENLTLFCLFA+CEP++F++A + K W +AMDEEIKSI+KNDTWEL 
Sbjct: 811  FRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELT 870

Query: 218  QLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRL 39
             LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQR GIDYDEVFAPVARLET+RL
Sbjct: 871  SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRL 930

Query: 38   IISLAAQNKWKI 3
            IISLAAQNKWKI
Sbjct: 931  IISLAAQNKWKI 942


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score = 1006 bits (2600), Expect = 0.0
 Identities = 485/672 (72%), Positives = 559/672 (83%), Gaps = 4/672 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEEK ++   +L+ +   + + ++ 
Sbjct: 274  YDKSSVKCYNCGKFGHYASECKAPSNKKFKEKANYVEEKIQEEDMLLMASYKKDEQEENH 333

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFISN
Sbjct: 334  KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 393

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+
Sbjct: 394  VYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDI 453

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
            A+CLKMCYK+ SWLWHLRFGHLNFGGLELLS+K MVRGLPCI+HP+Q+CEGCLLG QF+ 
Sbjct: 454  AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKM 513

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
            SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS    
Sbjct: 514  SFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFE 573

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       ESGL IK MR+D GGEFTSKEF ++CE NGIRR LTVPRSPQQNGVAER
Sbjct: 574  IFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAER 633

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SH
Sbjct: 634  KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            LRVFGSIAH HVPDE+R+KLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+++FDEE
Sbjct: 694  LRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT-- 396
            GEWDW ++ +DYNF P FE+D+    E + EEP                + E + ERT  
Sbjct: 754  GEWDWNSNEEDYNFFPHFEEDKP---EPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR 810

Query: 395  -RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELA 219
             RS++ELYEVT+  ENLTLFCLFA+CEP++F+EA + K W +AMDEEIKSI+KNDTWEL 
Sbjct: 811  FRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELT 870

Query: 218  QLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRL 39
             LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQRAGIDYDE+FAPVARLET+RL
Sbjct: 871  SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRL 930

Query: 38   IISLAAQNKWKI 3
            IISLAAQNKWKI
Sbjct: 931  IISLAAQNKWKI 942


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 486/672 (72%), Positives = 557/672 (82%), Gaps = 4/672 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEEK ++   +L+ +   + + ++ 
Sbjct: 274  YDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENH 333

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFISN
Sbjct: 334  KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 393

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+
Sbjct: 394  VYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDI 453

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
            A+CLKMCYK+ SWLWHLRFGHLNFGGLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ 
Sbjct: 454  AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKM 513

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
            SFPKES+SR+QK LELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS    
Sbjct: 514  SFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFE 573

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       ESGL IK MR+DRGGEFTSKEF ++CE NGIRR LTVPRSPQQNGVAER
Sbjct: 574  IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAER 633

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSPT+SV GKTPQEAW+GRK G+SH
Sbjct: 634  KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSH 693

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            LRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+++FDEE
Sbjct: 694  LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT-- 396
            GEWDW ++ +DYNF P FE+DE    E + EEP                + E + ERT  
Sbjct: 754  GEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR 810

Query: 395  -RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELA 219
             RS++ELYEVT+  ENLTLFCLFA+CEP++F+EA + K W +AMDEEIKSI+KNDTWEL 
Sbjct: 811  FRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELT 870

Query: 218  QLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRL 39
             LP GHK IGVKWVYK KKN+KGEVERYKARLVAKGY QRAGIDYDEVFAPVARLET+RL
Sbjct: 871  SLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRL 930

Query: 38   IISLAAQNKWKI 3
            IISLAAQNKWKI
Sbjct: 931  IISLAAQNKWKI 942


>ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 961

 Score =  994 bits (2571), Expect = 0.0
 Identities = 488/673 (72%), Positives = 561/673 (83%), Gaps = 5/673 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +V E+AN VEE+ ++  ++LL+A    GE +++
Sbjct: 273  YDKSSVKCYNCGKFGHYASECKAPSNKKVEEKANYVEEQVQE-EDMLLMASYKKGEHEEN 331

Query: 1829 -TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1653
              WYLD+GASNHMCG ++MFVELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFIS
Sbjct: 332  HKWYLDSGASNHMCGSKSMFVELDESVRGNVALGDESKMEVKGKGKILIRLKNGDHQFIS 391

Query: 1652 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 1473
            NVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +V MS+NRMF+LNI+ D
Sbjct: 392  NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVSMSKNRMFVLNIRND 451

Query: 1472 VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 1293
            +A+CLKMCYK+ SWLWHLRFGHLNFGGL+LLSKK MVRGLPCI+HP+Q+CEGCLLGKQF+
Sbjct: 452  IAQCLKMCYKEESWLWHLRFGHLNFGGLKLLSKKEMVRGLPCINHPNQVCEGCLLGKQFK 511

Query: 1292 QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 1113
             SFPKES++R+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS   
Sbjct: 512  MSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVF 571

Query: 1112 XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 933
                        ESGL IK+MR+DRGGEFTSKEF ++CE NGIRR LTVPRSPQQNGVAE
Sbjct: 572  ENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAE 631

Query: 932  RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 753
            RKNRTIL M RSMLKSK++PKE WAEAVA AVYL NRSPT+S+ GKTPQEAW+GRKPG+S
Sbjct: 632  RKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVS 691

Query: 752  HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDE 573
            HLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+V+FDE
Sbjct: 692  HLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVFDE 751

Query: 572  EGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT- 396
            E EWDW ++  DYNF P FE+D+    E + +EP                  E + ERT 
Sbjct: 752  EEEWDWKSNEDDYNFFPHFEEDDS---ELTRDEPPREEPTTPPTSPTSSQGEESSSERTL 808

Query: 395  --RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWEL 222
              RSL+ELYEVT+  +NLTLFCLFA+CEP++F+EA + K W +AMDEEIK+IKKNDTWEL
Sbjct: 809  HFRSLQELYEVTENQDNLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKAIKKNDTWEL 868

Query: 221  AQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIR 42
            A LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQRA IDYDEVFAPVARLET+R
Sbjct: 869  ASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRARIDYDEVFAPVARLETVR 928

Query: 41   LIISLAAQNKWKI 3
            LIISLAAQNKWKI
Sbjct: 929  LIISLAAQNKWKI 941


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
 gb|AAG50765.1|AC079131_10 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  959 bits (2480), Expect = 0.0
 Identities = 471/669 (70%), Positives = 541/669 (80%), Gaps = 1/669 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDD 1830
            YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEEK ++   +L+ +   + + ++ 
Sbjct: 274  YDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENH 333

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+ VKGKG ILIRLK+G HQFISN
Sbjct: 334  KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 393

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+
Sbjct: 394  VYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDI 453

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
            A+CLKMCYK+ SWLWHLRFGHLNFGGLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ 
Sbjct: 454  AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKM 513

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
            SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS    
Sbjct: 514  SFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFE 573

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       ESGL IK MR+DRGGEFTSKEF ++CE NGIRR LTVPRSPQQNGVAER
Sbjct: 574  IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAER 633

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SH
Sbjct: 634  KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            LRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKGYKLYNP   K I SR+++FDEE
Sbjct: 694  LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRS 390
            GEWDW ++ +DYNF P FE+D+    E + EEP                    +EE T  
Sbjct: 754  GEWDWNSNEEDYNFFPHFEEDKP---EPTREEP-------------------PSEEPT-- 789

Query: 389  LEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLP 210
                   + ++E          CEP++F+EA + K W +AMDEEIKSI+KNDTWEL  LP
Sbjct: 790  TPPTSPTSSQIEE--------KCEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLP 841

Query: 209  KGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIIS 30
             GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLIIS
Sbjct: 842  NGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIIS 901

Query: 29   LAAQNKWKI 3
            LAAQNKWKI
Sbjct: 902  LAAQNKWKI 910


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  921 bits (2381), Expect = 0.0
 Identities = 453/647 (70%), Positives = 524/647 (80%), Gaps = 3/647 (0%)
 Frame = -2

Query: 1934 NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDES 1755
            N +  E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDES
Sbjct: 261  NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDES 320

Query: 1754 VSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIH 1575
            V GNV+ GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI 
Sbjct: 321  VRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIR 380

Query: 1574 LKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFG 1395
            LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFG
Sbjct: 381  LKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 440

Query: 1394 GLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPI 1215
            GLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPI
Sbjct: 441  GLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 500

Query: 1214 KPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRG 1035
            KP S  KS  F +F     +K   +  K+                  SGL IK MR+DRG
Sbjct: 501  KPKSLEKSEVFKIF-----KKFKAHVEKE------------------SGLVIKTMRSDRG 537

Query: 1034 GEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAE 855
            GEFTSKEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAE
Sbjct: 538  GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 597

Query: 854  AVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSE 675
            AVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSE
Sbjct: 598  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657

Query: 674  KFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVI 495
            K+IFIGYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE   
Sbjct: 658  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP-- 715

Query: 494  VEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFAD 324
             E + EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+
Sbjct: 716  -EPTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAE 774

Query: 323  CEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEV 144
            CEP++F+EA + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEV
Sbjct: 775  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 834

Query: 143  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKI 3
            ERYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQNKWKI
Sbjct: 835  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKI 881


>gb|KZV47435.1| hypothetical protein F511_22511, partial [Dorcoceras hygrometricum]
          Length = 881

 Score =  843 bits (2177), Expect = 0.0
 Identities = 412/665 (61%), Positives = 502/665 (75%), Gaps = 3/665 (0%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDT 1827
            YDKS V+CYNC KFGHY+ +CRN    V E  N  +   E+    LLLA     E  +D 
Sbjct: 228  YDKSNVECYNCHKFGHYSYECRN---NVEETNNFAKNSIEEVNPTLLLACKTTQEKDNDK 284

Query: 1826 WYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNV 1647
            WYLD+GAS+H+CG + +FVELDES+ G ++FGD S+V V+G+GTIL R K+G HQ ISNV
Sbjct: 285  WYLDSGASSHICGNKDLFVELDESIGGKITFGDSSQVQVQGRGTILFRSKNGSHQLISNV 344

Query: 1646 YYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVA 1467
            YYVP MK+N+LSLGQLLEK Y+I LKD +L+++D    LI  VPM++NRM LLNIQ+DV 
Sbjct: 345  YYVPDMKSNVLSLGQLLEKNYEISLKDKSLTMKDESGRLI-EVPMTKNRMLLLNIQSDVP 403

Query: 1466 KCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQS 1287
             CLK  +KDSSWLWH+R GHLNF  L+L+SK+ MV+GLP I HP+QLCEGC+LGKQ R+S
Sbjct: 404  MCLKSFFKDSSWLWHMRLGHLNFDSLKLMSKRKMVKGLPSIDHPNQLCEGCILGKQARKS 463

Query: 1286 FPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXX 1107
            F K+S +R+Q PLELIH+DVCGPIKP+S GKSNYF++FIDDFSRKTWVYF+K+KS     
Sbjct: 464  FSKKSMTRAQHPLELIHSDVCGPIKPSSLGKSNYFIIFIDDFSRKTWVYFIKEKSEVFET 523

Query: 1106 XXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERK 927
                      +SG  I+A+R+DRGGEFTS EF++FCE NGI RP+T P SPQQNGV+ERK
Sbjct: 524  FKKFKIMVEKQSGYQIQALRSDRGGEFTSNEFKKFCEDNGIHRPMTTPYSPQQNGVSERK 583

Query: 926  NRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHL 747
            NRTILNMVRSMLK K MPKEFWAEAV CAVYL+NR  T+SV GKTP E  +G KP ++HL
Sbjct: 584  NRTILNMVRSMLKRKNMPKEFWAEAVTCAVYLTNRWHTKSVNGKTPNEDCSGYKPNVAHL 643

Query: 746  RVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEG 567
            RVFGSIA+ HVPDE+R+KLDDKS +++FIGYD NSK YKLYNP NGKII SRDV FDEE 
Sbjct: 644  RVFGSIAYAHVPDEKRTKLDDKSARYVFIGYDTNSKCYKLYNPNNGKIILSRDVEFDEES 703

Query: 566  EWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSL 387
             WDW    + Y++ P F+D E+     +   P                       R RSL
Sbjct: 704  AWDWNVSNETYSYSPFFDDQEEESTHPTTPPPSPPPQDDQDGS-------SSQPRRFRSL 756

Query: 386  EELYEVTDKLENL---TLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQ 216
             ELY+ T++++NL   T FCL A+ EPV+FE+A  ++KW  AMD EIK+I+KNDTWELA 
Sbjct: 757  RELYKTTEEVQNLSEFTQFCLLAETEPVSFEDAVYDEKWKHAMDGEIKAIRKNDTWELAS 816

Query: 215  LPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLI 36
            LPKG  +IGVKW+YK+K+NAKGE+E+YKARLVAKGY Q+ GIDYDEVFAPVARLETIRLI
Sbjct: 817  LPKGKSSIGVKWMYKIKRNAKGEIEKYKARLVAKGYKQKVGIDYDEVFAPVARLETIRLI 876

Query: 35   ISLAA 21
            ISLAA
Sbjct: 877  ISLAA 881


>dbj|GAU34810.1| hypothetical protein TSUD_394360 [Trifolium subterraneum]
          Length = 749

 Score =  791 bits (2044), Expect = 0.0
 Identities = 407/631 (64%), Positives = 468/631 (74%), Gaps = 9/631 (1%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNPNTR-VNERANLVEE-KKEDGANVLLLARNDNGEGQD 1833
            YDKS+V+CYNC+ FGHYA + R  + R V E+AN VEE  +EDG   LLLA  DN +G D
Sbjct: 150  YDKSRVKCYNCENFGHYASEYRAHSIRKVEEKANYVEEISQEDGT--LLLAHKDNEKGGD 207

Query: 1832 DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1653
            + WYLD+GASNHMCGRR+MFVELDESV+ NV+FGD+SKVAVKGKG +LIRLK+G HQFIS
Sbjct: 208  NQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDESKVAVKGKGNVLIRLKNGDHQFIS 267

Query: 1652 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 1473
            NVYYVP MK+NILSLGQLLEKGYDI L +NNLSIRD+ N  IA+VPMSRNRMF+LNIQ D
Sbjct: 268  NVYYVPNMKSNILSLGQLLEKGYDIQLTNNNLSIRDHSNKFIAKVPMSRNRMFVLNIQKD 327

Query: 1472 VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 1293
            VA+CLKMCYK+ SWLWHLRFGHLNFGGLEL+SKK MVRGLP I+HP+Q+CEGCLLGKQF+
Sbjct: 328  VAQCLKMCYKEVSWLWHLRFGHLNFGGLELVSKKEMVRGLPYINHPNQVCEGCLLGKQFK 387

Query: 1292 QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 1113
             SFP ES+SR+QK L+LIH DVCGPIKP S GKSNYFLLF+DDFSRKTWVYFLK+KS   
Sbjct: 388  MSFPNESSSRAQKSLKLIHTDVCGPIKPRSLGKSNYFLLFVDDFSRKTWVYFLKEKSEVF 447

Query: 1112 XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 933
                                           K+F+   E    R  LTVPRSPQQNGVAE
Sbjct: 448  E----------------------------NFKKFKALVEKESGR--LTVPRSPQQNGVAE 477

Query: 932  RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 753
            RKNRTIL M RSMLKSK++PKE WA+AVACAVYLSN SPTRSV GKTPQEAW+GRKPGI 
Sbjct: 478  RKNRTILEMARSMLKSKRLPKELWAKAVACAVYLSNCSPTRSVLGKTPQEAWSGRKPGIC 537

Query: 752  HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDE 573
            HLRVFGSIAH HVP E+RSKLDDKSEK+IFIGYD NSKGYKLYNP  GK I SR+V+FDE
Sbjct: 538  HLRVFGSIAHAHVPAEKRSKLDDKSEKYIFIGYDGNSKGYKLYNPDTGKTIISRNVVFDE 597

Query: 572  EGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPI------XXXXXXXXXXXXXXFLVER 411
            EGEWDW +  +D NF PEFE++    V+Q    P                      L E 
Sbjct: 598  EGEWDWRSSNEDCNFFPEFEEEASREVQQVPNSPTSPTSEDTGSERIVTCTRSLHDLYEN 657

Query: 410  NEE-RTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKND 234
             E    R LE+LYE T ++ N TL CL A+ E  N EE   +K+W DAMD+EIK+I+KND
Sbjct: 658  TEALAPRRLEDLYEETREMNNPTLLCLSANYESGNSEEVAPDKRWRDAMDKEIKTIEKND 717

Query: 233  TWELAQLPKGHKAIGVKWVYKVKKNAKGEVE 141
            TW+   LPK  K IGVK   K KKN  G+++
Sbjct: 718  TWKFISLPKDRKTIGVKKFCKAKKNDNGKIK 748


>dbj|GAU28864.1| hypothetical protein TSUD_293160 [Trifolium subterraneum]
          Length = 951

 Score =  788 bits (2034), Expect = 0.0
 Identities = 408/657 (62%), Positives = 475/657 (72%), Gaps = 17/657 (2%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE-KKEDGANVLLLARNDNGEGQD 1833
            YDKS+V+CYNC+KFGHYA +CR P N +V E+AN VEE  +EDG   LLLA  DN  G D
Sbjct: 274  YDKSRVKCYNCEKFGHYASECRAPSNRKVEEKANYVEEISQEDGT--LLLAHKDNERGGD 331

Query: 1832 DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1653
            + WYLD+GASNHMCGRR+MFVELDESV+GNV+FGD+SKVAVKGKG +LIRLK+G HQFIS
Sbjct: 332  NQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESKVAVKGKGNVLIRLKNGDHQFIS 391

Query: 1652 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 1473
            NVYYVP MK+NILSLGQLLEKGYDI LK+NNLSIRD+ N  IA+V MSRNRMF+LNIQ D
Sbjct: 392  NVYYVPNMKSNILSLGQLLEKGYDIQLKNNNLSIRDHSNKFIAKVTMSRNRMFVLNIQND 451

Query: 1472 VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 1293
            VA+CLKMCYK+  WLWHLRFGHLNFGGLELLSKK MVRGLP I+HP+Q+CEGCLLGKQF+
Sbjct: 452  VAQCLKMCYKEEPWLWHLRFGHLNFGGLELLSKKEMVRGLPYINHPNQVCEGCLLGKQFK 511

Query: 1292 QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 1113
             SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFID+FSRKTWVYFLK+KS   
Sbjct: 512  MSFPKESSSRAQKPLELIHMDVCGPIKPRSLGKSNYFLLFIDNFSRKTWVYFLKEKSEVF 571

Query: 1112 XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 933
                        ESG  IKA+R+DRGGEFTS +F ++CE N IRR LTVPRSPQQNGV E
Sbjct: 572  ENFKKFKALVEKESGRVIKAIRSDRGGEFTSNDFLKYCEDNDIRRQLTVPRSPQQNGVTE 631

Query: 932  RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 753
            RKNRTIL M RSMLKSK++PKE WAEAVACAVYLSNRSPTR                   
Sbjct: 632  RKNRTILEMARSMLKSKRLPKELWAEAVACAVYLSNRSPTR------------------- 672

Query: 752  HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDE 573
                          +E+RSKLDDKSEK+IFIGYD NSKG+KL NP  GK I SR+V+FDE
Sbjct: 673  --------------NEKRSKLDDKSEKYIFIGYDGNSKGFKLLNPNMGKTIISRNVVFDE 718

Query: 572  EGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTR 393
            EGEW+W +  +D NF  EFE++    V+Q    P                  ER   RTR
Sbjct: 719  EGEWNWRSSNEDCNFFLEFEEEASREVQQVPSSPTSPASEDTGS--------ERIVTRTR 770

Query: 392  SLEELYEVTD---------------KLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEE 258
            SL +LYE T+               +++N TL CL A+ E  N EE   +K+W DAMD+E
Sbjct: 771  SLHDLYENTEALSPRRLGDLYEETREMDNPTLLCLSANYESGNSEEVAPDKRWRDAMDKE 830

Query: 257  IKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGID 87
            IK+I+KNDTW+   LPK  K IGVK   K KKN   +++ Y+ +LV KGY Q+   D
Sbjct: 831  IKTIEKNDTWKFISLPKDRKTIGVKKFCKAKKNDNEKIKIYQTKLVTKGYKQKGKND 887


>gb|ACN78973.1| copia-type polyprotein [Glycine max]
 gb|ACN78980.1| copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  786 bits (2031), Expect = 0.0
 Identities = 385/604 (63%), Positives = 466/604 (77%), Gaps = 1/604 (0%)
 Frame = -2

Query: 1811 GASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPT 1632
            G     CG +  FVELD+ V GNVSFGD SKV ++GKGTILI LKDG H+ I++VYYVP 
Sbjct: 31   GVEGVTCGCKEKFVELDKKVKGNVSFGDSSKVQIQGKGTILISLKDGAHKLITDVYYVPK 90

Query: 1631 MKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKM 1452
            +K+NILSLGQL+EKGY+IH+KD  L +RD  +NLIA+V MSRNRMF LNI+T+ AKCLK 
Sbjct: 91   LKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKA 150

Query: 1451 CYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKES 1272
              KD SW WH+RFGHLNFG L+ L ++ MV+G+P I+HP+QLCE CLLGK  R+SFPKE+
Sbjct: 151  SIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEA 210

Query: 1271 NSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXX 1092
            NSR+++PL+L++ DVCGPI P S G + YFLLFIDD+SRKTWVYFLKQKS          
Sbjct: 211  NSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFK 270

Query: 1091 XXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTIL 912
                 ESG  IKA+R+DRGGEFTSKEF EFCE  GIRRPLTVPRSPQQNGVAERKNRTIL
Sbjct: 271  ALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTIL 330

Query: 911  NMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGS 732
            NM R MLK+K MPKEFWAEAVACAVYLSNRSPT++V  +TPQEAW+G KP + HLRVFGS
Sbjct: 331  NMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGS 390

Query: 731  IAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWG 552
            IA+ HVPD+ R KLDD+SEK +FIGYD +SKGYKLYNP NGK I SRDV F EEG W+W 
Sbjct: 391  IAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWE 450

Query: 551  THAKDYNFVPEFED-DEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELY 375
                 Y+F P FE+ DE+ +        +                      R R+++ELY
Sbjct: 451  EKEDTYDFFPYFEEIDEEALTPNDSTPALSPTPSTNEASSSSEGSSSERPRRMRNIQELY 510

Query: 374  EVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKA 195
            + T+ + +  LFCLF D +P+NF+EA ++K+W  AM+EEIK+I+KN+TWEL+ LPKGH+A
Sbjct: 511  DETEVIND--LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELSSLPKGHEA 568

Query: 194  IGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQN 15
            IGVKWV+K+KKNAKGEVER+KARLVAKGY Q+  +DYDEVFAPVAR+ETIRL+ISLAAQ 
Sbjct: 569  IGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEVDYDEVFAPVARMETIRLLISLAAQM 628

Query: 14   KWKI 3
            KW+I
Sbjct: 629  KWRI 632


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  744 bits (1922), Expect = 0.0
 Identities = 352/672 (52%), Positives = 475/672 (70%), Gaps = 5/672 (0%)
 Frame = -2

Query: 2003 DKSQVQCYNCQKFGHYARDCRNPNTRVNERANLV--EEKKEDGANVLLLARNDNGEGQDD 1830
            +KSQVQCYNC K+GH++ +CR+ + +V+ER ++    E  E   + + L   +N + +  
Sbjct: 292  NKSQVQCYNCNKYGHFSYECRSTH-KVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRS 350

Query: 1829 TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISN 1650
             WYLD GASNHMCGR+ +F ELDE+V G ++FGD+S   +KGKG ++I  ++G  ++IS+
Sbjct: 351  VWYLDNGASNHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISD 410

Query: 1649 VYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDV 1470
            VYYVP +K+N++SLGQLLEKGY++H+KD +L+IR+    L+ RV M+RNR+F L+I++  
Sbjct: 411  VYYVPALKSNLISLGQLLEKGYEVHMKDRSLAIRNKSGELVVRVDMTRNRLFTLDIESGE 470

Query: 1469 AKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQ 1290
             KC+K   K+ SWLWHLR+GHL F GL+LLSK NMV GLP I+HPDQLCE C+ GKQ RQ
Sbjct: 471  VKCMKTDLKNESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQ 530

Query: 1289 SFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXX 1110
             F    + R+++PLE++H D+ GP    S G + Y+L FIDD+SRK WVYFLK KS    
Sbjct: 531  KFEVGKSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALE 590

Query: 1109 XXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAER 930
                       +SG ++K +R+DRGGE+T+K ++ FC+ +GI   LT  R+PQQNGVAER
Sbjct: 591  KFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAER 650

Query: 929  KNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISH 750
            KNRTIL+M RSM+K K +P+ FWAEAV CAVYL N+ PT+SV  KTP+EAW+G KP + H
Sbjct: 651  KNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGH 710

Query: 749  LRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEE 570
            L++FG IA+ HVP++QR KLDD+ EK IFIGYD  SK Y+LYNP+  K+I SRDV FDE 
Sbjct: 711  LKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEA 770

Query: 569  GEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRS 390
              W W    K    +  F +D+    EQ  ++                  ++    RTRS
Sbjct: 771  DYWRWSEEEKKVEGL-FFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRS 829

Query: 389  LEELYEVTDKLE---NLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELA 219
            L ++Y  T+ +E   + +LFCL  +C+PV +EEA +N KW  AMDEEI +I++NDTWEL 
Sbjct: 830  LNDIYNSTEPVETQFDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELT 889

Query: 218  QLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRL 39
             LP+GH  IGVKWVYK K N +G+VE+YKARLVAKGY QR G+DYDE+FAPVAR++TIRL
Sbjct: 890  SLPEGHSPIGVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRL 949

Query: 38   IISLAAQNKWKI 3
            +I++AAQ KWKI
Sbjct: 950  LIAVAAQYKWKI 961


>gb|PNX73691.1| copia-type reverse transcriptase-like protein, partial [Trifolium
            pratense]
          Length = 923

 Score =  713 bits (1840), Expect = 0.0
 Identities = 363/674 (53%), Positives = 469/674 (69%), Gaps = 7/674 (1%)
 Frame = -2

Query: 2003 DKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTW 1824
            D +  +CYNC K GH A+DC+    +V E  NLV E  E     LL+A+N+     D  W
Sbjct: 260  DCNSYKCYNCGKVGHLAKDCQ-VEKKVEETTNLVLEA-EANEGFLLMAQNEINTNNDTMW 317

Query: 1823 YLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVY 1644
            YLD+GASNHMCG + +F E+ +   G+VSFGD SKV V+GKGTI    KDG    I  VY
Sbjct: 318  YLDSGASNHMCGHKHLFKEMQKIEDGHVSFGDASKVKVEGKGTICYLQKDGLIGSIKEVY 377

Query: 1643 YVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAK 1464
            YVP +KTNIL LGQL EKGY I +KD  L ++D + +LIA+V M RNRM+ LN+++   K
Sbjct: 378  YVPDLKTNILXLGQLTEKGYSILIKDRILHLKDKLGHLIAQVEMERNRMYKLNLRSVQEK 437

Query: 1463 CLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSF 1284
            CL++  +D + LWHLRFGHL+  GL+ L++KNMV GLP + +  + CE C+L KQ R SF
Sbjct: 438  CLQVNVEDKASLWHLRFGHLHHAGLKRLAEKNMVHGLPNMDYEGKFCEECVLSKQTRTSF 497

Query: 1283 PKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXX 1104
             K++  +++  LELIH D+CGPI P SF    YF+ FIDDFSRKTWVYFLK+KS      
Sbjct: 498  QKKAEYQAKHILELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVF 557

Query: 1103 XXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKN 924
                      +  HIKA+R+DRGGE+TS  F ++CE  GIRR LT P SPQQNGVAERKN
Sbjct: 558  KKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKN 617

Query: 923  RTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLR 744
            RT+L+MVRSMLKSK M K+FWAEAV CA+Y+ NR P   +  +TPQE W+G+KP +SHL+
Sbjct: 618  RTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLK 677

Query: 743  VFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGE 564
            VFGS+A+ H+PD++R+KL+DKS+K+IFIGYD  +KGYKL++PI+ K+I SRDV  +E  +
Sbjct: 678  VFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVRINEASK 737

Query: 563  WDWGTHAKDYNFVPEFEDDEQVI-------VEQSGEEPIXXXXXXXXXXXXXXFLVERNE 405
            WDW  ++ + N   E E+    +       +E+S  E                   E  +
Sbjct: 738  WDW-NNSTEVNV--EVEESSVAVPTSISTELEESDSED------------------EPLQ 776

Query: 404  ERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWE 225
             R RSL++LYE T   E + L CL AD E +NFEEA +N+KW  AM+EEIK+I++N+TWE
Sbjct: 777  PRMRSLQDLYETT---EEVHLVCLLADTENINFEEALRNEKWKTAMNEEIKAIERNNTWE 833

Query: 224  LAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETI 45
            LA+LPKG + IGVKWV+K K NA+GE+ERYKARLVAKGY Q+AGIDYDEVFAPVAR+ETI
Sbjct: 834  LAELPKGSQPIGVKWVFKKKMNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETI 893

Query: 44   RLIISLAAQNKWKI 3
            RL+IS AAQ KW I
Sbjct: 894  RLLISQAAQFKWPI 907


>gb|PHT36714.1| hypothetical protein CQW23_24414 [Capsicum baccatum]
          Length = 1427

 Score =  717 bits (1851), Expect = 0.0
 Identities = 346/676 (51%), Positives = 476/676 (70%), Gaps = 10/676 (1%)
 Frame = -2

Query: 2000 KSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDG-ANVLLLARNDNGEGQDDTW 1824
            KSQVQCYNC K+G+Y+  CR+   +  ER+++   + E+G + + L  + D G  ++  W
Sbjct: 594  KSQVQCYNCDKYGYYSYKCRSA-PKQEERSHVAAIENENGESRIFLTYKGDQGSNRN-VW 651

Query: 1823 YLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVY 1644
            YLD  ASNHMCGR  +FVELDESV+G V+FGDDS++ VKGKG ++I  K+G  ++I++VY
Sbjct: 652  YLDNCASNHMCGRMELFVELDESVNGRVTFGDDSQIDVKGKGKVMITQKNGEKKYITDVY 711

Query: 1643 YVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAK 1464
            YVP +K+NI+S+GQL E GY++ +KD +L++R+    ++++V M+RN +F ++I++   K
Sbjct: 712  YVPALKSNIISIGQLCELGYEVTIKDCSLTLRNKNREVVSKVDMTRNHLFTIDIESGEVK 771

Query: 1463 CLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSF 1284
            C+K+  KD SWLWHLR+GHL F GL+LL+K+NMV GLP I+ PD LCE C+ GKQ RQSF
Sbjct: 772  CMKISIKDDSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPPDHLCEACIKGKQHRQSF 831

Query: 1283 PKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXX 1104
                + R++KPLE++H+D+ GP    S G + Y+L FIDDFSR++WVY LK+KS      
Sbjct: 832  EVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKF 891

Query: 1103 XXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKN 924
                     +SG ++K +R+DRGGE+T+  F++F + +GI   LTV  +PQQNGVAERKN
Sbjct: 892  KEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKN 951

Query: 923  RTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLR 744
            RTIL++ RSM+K K +P+ FWAEAV CAVYL NR PT+SV   TP EAW+G+KPG+ HL+
Sbjct: 952  RTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLK 1011

Query: 743  VFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGE 564
            +FG IA+ HVP++ R KLDD+ EK IFIGYD  SK Y+ YNP+  K+I SRDV FDE   
Sbjct: 1012 IFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071

Query: 563  WDWGTHAKDYN--FVPEFEDDEQVI--VEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT 396
            W W    K     F  + EDD+ VI   E  G+ P                    ++  T
Sbjct: 1072 WRWSEEEKKVEGLFFSDEEDDDFVIQNEEGDGQSPPESSGATNPSTSASPSSSSSSDAPT 1131

Query: 395  --RSLEELYEVTDKLE---NLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDT 231
              RSL E+YE T+ +E   + +LFCL A+C+PV +EEA  + KW  AMDEEI +I++NDT
Sbjct: 1132 KMRSLHEIYEDTEPIETTFDYSLFCLMAECDPVTYEEANVDVKWKKAMDEEIAAIRRNDT 1191

Query: 230  WELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLE 51
            WEL  +P+GH  IGVKWVYK K N +G+V++YKARLVAKGY ++ G+DYDEVFAPVAR++
Sbjct: 1192 WELTSMPEGHNPIGVKWVYKTKTNKEGKVDKYKARLVAKGYKKKYGVDYDEVFAPVARID 1251

Query: 50   TIRLIISLAAQNKWKI 3
            T+RL+ +LAAQN+WKI
Sbjct: 1252 TVRLLTALAAQNRWKI 1267


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  711 bits (1836), Expect = 0.0
 Identities = 353/667 (52%), Positives = 463/667 (69%)
 Frame = -2

Query: 2003 DKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTW 1824
            D +  +CYNC K GH+A+DCR  + ++ E  NL  E  E    VLL+A+++     D  W
Sbjct: 299  DCNSDKCYNCGKVGHFAKDCR-ADIKIEETTNLALEV-ETNEGVLLMAQDEVNINNDTLW 356

Query: 1823 YLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVY 1644
            YLD+GASNHMCG   +F ++ +   G+VSFGD SKV VKG+GT+    KDG    + +VY
Sbjct: 357  YLDSGASNHMCGHEYLFKDMQKIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVY 416

Query: 1643 YVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAK 1464
            YVP +KTNILS+GQL EKGY I LKD  L +++    L+AR+ M+RNRM+ LN+++   K
Sbjct: 417  YVPDLKTNILSMGQLTEKGYSIFLKDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIREK 476

Query: 1463 CLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSF 1284
            CL++  +D + LWHLRFGHL+ GGL+ L+KKNMV GLP + +  + CE C+L K  R SF
Sbjct: 477  CLQVNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSF 536

Query: 1283 PKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXX 1104
            PK++   +++PLELIH D+CGPI P SF    YF+ FIDDFSRKTWVYFLK+KS      
Sbjct: 537  PKKAQYWAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEVF 596

Query: 1103 XXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKN 924
                      +   IKA+R+DRGGE+TS  F E+CE  GIRR LT P +PQQNGVAERKN
Sbjct: 597  KKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKN 656

Query: 923  RTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLR 744
            RTIL+MVRSMLKSKKMPKEFWAEAV CA+Y+ NR P   +  +TPQEAW+G+KP +SHL+
Sbjct: 657  RTILDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLK 716

Query: 743  VFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGE 564
            VFGS+A+ HVPD++R+KL+DKS++++FIGYD  +KGYKL +PI+ K+  SRDV  +E  E
Sbjct: 717  VFGSVAYAHVPDQRRTKLEDKSKRYVFIGYDEKTKGYKLLDPISKKVTVSRDVQINEASE 776

Query: 563  WDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLE 384
            WDW              +  +V++E     P                  E  + + RSL 
Sbjct: 777  WDW-------------NNSSEVMIEVGESSPTSINSETTDDED------EPRQPKIRSLH 817

Query: 383  ELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKG 204
            +LY+ T+++    L CL AD E ++FEEA ++KKW  AMDEEIK+I +N+TWEL +LP+G
Sbjct: 818  DLYDSTNEVH---LVCLLADAENISFEEAVRDKKWQTAMDEEIKAIDRNNTWELTELPEG 874

Query: 203  HKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLA 24
             + IGVKW++K K NA+GE+ERYKARLVAKGY Q+ GIDYDEVFAPV R+ETIRL+IS A
Sbjct: 875  SQPIGVKWIFKKKMNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQA 934

Query: 23   AQNKWKI 3
            AQ KW I
Sbjct: 935  AQFKWPI 941


>gb|PKU78070.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 477

 Score =  659 bits (1700), Expect = 0.0
 Identities = 315/406 (77%), Positives = 355/406 (87%)
 Frame = -2

Query: 2006 YDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDT 1827
            Y+KSQV+CYNC KFGH+A++CR P ++VNE+ N VEE++++  ++LLLA  +N + +D T
Sbjct: 73   YEKSQVKCYNCNKFGHFAKECRAPKSKVNEKVNYVEEERKED-DILLLAYKNNEKCEDGT 131

Query: 1826 WYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNV 1647
            WYLDTGASNHMCG+R+MFVELDE+V GNVSFGDDSK+ VKGKG ILIRLK+G HQFISNV
Sbjct: 132  WYLDTGASNHMCGKRSMFVELDETVGGNVSFGDDSKIEVKGKGNILIRLKNGNHQFISNV 191

Query: 1646 YYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVA 1467
            Y+VP M++NILSLGQLLEKGYDIHLK+N L ++DN+  LIA+VPMSRNRMFLLNIQ DVA
Sbjct: 192  YFVPNMRSNILSLGQLLEKGYDIHLKNNYLFLKDNIGTLIAKVPMSRNRMFLLNIQNDVA 251

Query: 1466 KCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQS 1287
            KCLK CYKD SWLWHLRFGHLNFGGLELLSKK MVRGLPCI HPDQ+CE CLLGK FR+S
Sbjct: 252  KCLKACYKDVSWLWHLRFGHLNFGGLELLSKKEMVRGLPCIKHPDQVCEACLLGKHFRKS 311

Query: 1286 FPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXX 1107
            FP+ES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLKQKS     
Sbjct: 312  FPRESSSRAQKPLELIHTDVCGPIKPCSLGKSNYFLLFIDDFSRKTWVYFLKQKSEVFGI 371

Query: 1106 XXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERK 927
                      ESGL IKAMR+DRGGEFTSKEFQEFCEANGIRR LTVP SPQQNGVAERK
Sbjct: 372  FKKFKAAVEKESGLKIKAMRSDRGGEFTSKEFQEFCEANGIRRSLTVPGSPQQNGVAERK 431

Query: 926  NRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTP 789
            NRTIL+M RSMLKSKK+PKEFWAEAV+CAVYL+NRSPTRSVWG TP
Sbjct: 432  NRTILDMARSMLKSKKLPKEFWAEAVSCAVYLTNRSPTRSVWGMTP 477