BLASTX nr result

ID: Rehmannia29_contig00016292 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00016292
         (483 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KZV58502.1| hypothetical protein F511_23755 [Dorcoceras hygro...    58   3e-07
ref|XP_019176272.1| PREDICTED: uncharacterized protein LOC109171...    45   7e-06
ref|XP_019190620.1| PREDICTED: replication protein A 70 kDa DNA-...    45   7e-06
ref|XP_019181204.1| PREDICTED: replication factor A protein 1-li...    44   9e-06

>gb|KZV58502.1| hypothetical protein F511_23755 [Dorcoceras hygrometricum]
          Length = 184

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +3

Query: 294 RLSCTLWDDYVEQILPHLEKNIIDPVVVILQMGRAKVFKG---ISKLFFLIKLICIPSY 461
           +LSCTLW D+V  I+ HLEK+  +P ++ILQM R+K F+G   +S  F++ K+I   S+
Sbjct: 62  KLSCTLWGDFVNDIMSHLEKSGNNPAIIILQMCRSKQFRGEIRVSNTFYVTKMIVKESF 120


>ref|XP_019176272.1| PREDICTED: uncharacterized protein LOC109171655 [Ipomoea nil]
          Length = 418

 Score = 45.4 bits (106), Expect(2) = 7e-06
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
 Frame = +3

Query: 285 SHRRLSCTLWDDYVEQILPHLEKNIIDPVVVILQMGRAKVFK----------GISKLFF 431
           S +++ CTLWD++V+Q+ P+      DPV+V++Q+ R K+            G ++LFF
Sbjct: 54  SLKQIKCTLWDEHVDQVTPYFHSAANDPVIVLIQLCRPKIMDNGEVCICNSFGATQLFF 112



 Score = 32.0 bits (71), Expect(2) = 7e-06
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 116 VDVIGRVVLMHSGQNKDLDGRVTRFIETTLED 211
           +DVIGR+V ++S   K + G+ +R I+  LED
Sbjct: 22  IDVIGRIVEIYSPLEKTITGKKSRLIDFVLED 53


>ref|XP_019190620.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit D-like
           [Ipomoea nil]
          Length = 366

 Score = 45.4 bits (106), Expect(2) = 7e-06
 Identities = 14/40 (35%), Positives = 31/40 (77%)
 Frame = +3

Query: 285 SHRRLSCTLWDDYVEQILPHLEKNIIDPVVVILQMGRAKV 404
           +  +L CT+WDD+V+Q++P+     ++P++++LQ+ RA++
Sbjct: 173 NENQLHCTVWDDHVDQLVPYFNSTSLEPIILLLQLCRARL 212



 Score = 32.0 bits (71), Expect(2) = 7e-06
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 116 VDVIGRVVLMHSGQNKDLDGRVTRFIETTLED 211
           +DVIGRVV ++S   +++ GR+ + I+  LED
Sbjct: 140 IDVIGRVVEIYSPIERNVGGRMAKLIDFVLED 171


>ref|XP_019181204.1| PREDICTED: replication factor A protein 1-like isoform X2 [Ipomoea
           nil]
          Length = 370

 Score = 44.3 bits (103), Expect(2) = 9e-06
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +3

Query: 294 RLSCTLWDDYVEQILPHLEKNIIDPVVVILQMGRAKVFKG 413
           RL CT+WD++V+ ILP+    I  P++V++Q+ RAK   G
Sbjct: 176 RLKCTVWDNHVDSILPYYNSVIEGPLIVLIQLCRAKEVNG 215



 Score = 32.7 bits (73), Expect(2) = 9e-06
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +2

Query: 116 VDVIGRVVLMHSGQNKDLDGRVTRFIETTLED 211
           +DVIG+VV ++S  +K +DGR +R I+  +ED
Sbjct: 140 LDVIGKVVEIYSPLDKIIDGRPSRLIDFIIED 171


Top