BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00015143
         (3102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   869   0.0  
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   848   0.0  
gb|PNX96222.1| retrovirus-related Pol polyprotein from transposo...   844   0.0  
gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) ...   843   0.0  
gb|PNX92904.1| retrovirus-related Pol polyprotein from transposo...   845   0.0  
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo...   840   0.0  
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo...   842   0.0  
gb|PNX92993.1| retrovirus-related Pol polyprotein from transposo...   842   0.0  
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...   828   0.0  
gb|PNX93476.1| retrovirus-related Pol polyprotein from transposo...   839   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   834   0.0  
gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium prat...   834   0.0  
gb|PNX95813.1| retrovirus-related Pol polyprotein from transposo...   826   0.0  
gb|PNY12308.1| retrovirus-related Pol polyprotein from transposo...   823   0.0  
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   808   0.0  
gb|PNY12226.1| retrovirus-related Pol polyprotein from transposo...   823   0.0  
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo...   818   0.0  
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo...   820   0.0  
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo...   816   0.0  
gb|PNX93622.1| retrovirus-related Pol polyprotein from transposo...   820   0.0  

>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  869 bits (2245), Expect = 0.0
 Identities = 463/1033 (44%), Positives = 631/1033 (61%), Gaps = 13/1033 (1%)
 Frame = +1

Query: 4    SPVNLSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTL 183
            SP+N   P+ V LP G H+  TH+G VK ++   L+DVL +P+F YNL+S+S+L++  + 
Sbjct: 301  SPIN---PIDVKLPTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSC 357

Query: 184  ECMFSQHKCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGS------VHNNKGVDDLQVWH 345
            + +F  H C +Q+    K      V  GLY    S           VH    +  + +WH
Sbjct: 358  QLIFDHHSCIIQETNTMKKIGTVDVNEGLYSFTASNIHHPSTNSVIVHPKCSIQPIDLWH 417

Query: 346  RRLGHTSLSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDI 525
             R+GH S   LQ  PFL    + +    CNTCH AKQ +L FPLS  +  Q F+L+H+DI
Sbjct: 418  FRMGHLSHERLQSFPFL----SVDTSFSCNTCHHAKQKKLPFPLSHSYASQPFDLLHMDI 473

Query: 526  WGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVR 705
            WGP    S+    Y LTIVDD TR TW++LM++KSE   HI  FI  V+ QF + VK +R
Sbjct: 474  WGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKHVKVIR 533

Query: 706  SDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKK 885
            +DNG EF   Q    F+ +GI+HQ +C  TPQQNG+VERKH+H+L + R+L+FQ+ LP  
Sbjct: 534  TDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQANLPSI 590

Query: 886  FWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFE 1065
            FW + L+ A  ++N +P+  L   SPFE LY  P       VFGCLC++S +   R K +
Sbjct: 591  FWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSHRTKLD 650

Query: 1066 PRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFP-FHNGNSSAAEIPLPIQA 1242
            PRA  CIFLG+    KGY L+NL T  + +SR+V+FHE +FP F   +S +   P+PI  
Sbjct: 651  PRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSPVPIHY 710

Query: 1243 --IEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDY----VTN 1404
              +++       +   S    +D  S          L R  R R  P++LQD+     + 
Sbjct: 711  NYVDYPTFPSSSIVESSDPPTSDQHSS------PPPLRRSTRPRRPPTYLQDFHGAFTST 764

Query: 1405 TVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKD 1584
            +  H ST ++   L    +YDL          +S ++  ++  IS S +EP ++ EA+K 
Sbjct: 765  STAHSSTGIR-HPLHSFLSYDL----------LSPSFHHYVFSIS-SVTEPKNFAEASKS 812

Query: 1585 ASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGY 1764
             SW +AM++E+ ALE N TW LT+LP  K AIG +WVYK+K  +DG+IDRYKARLVAKGY
Sbjct: 813  DSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGY 872

Query: 1765 LQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEG 1944
             Q+EG+DF ++FSPVAKL TVR+L++LA    W L  +D+NNAFLHG L+EEVYM  P G
Sbjct: 873  TQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPG 932

Query: 1945 YHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLAL 2124
               +  G+VC L+RSLYGLKQASRQW    S  L+  G+V S  D+ LF+K       A+
Sbjct: 933  LTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAI 992

Query: 2125 VIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIM 2304
            +IYVDD+++ G+    I +L + LH  F IKDLG+ KYFLGLE+ R++ G HLCQRKYI+
Sbjct: 993  LIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYIL 1052

Query: 2305 DLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQ 2484
            DLL DTG++  KPVSTP     +++A + TP  D   +RRLVGRL+YL  +RPDI+Y VQ
Sbjct: 1053 DLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIYLTNTRPDITYAVQ 1112

Query: 2485 QLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSI 2664
            QLSQFV  PT AH      +L+YLKGT   G+F  V    Q  A+ D+DW  C  TR+SI
Sbjct: 1113 QLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSDWAGCPDTRRSI 1172

Query: 2665 TGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIP 2844
            TG+ V+ G+SL               +EAEYR++A T CEL+WL  L  D  + P  P  
Sbjct: 1173 TGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDPISPSI 1232

Query: 2845 LHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALG 3024
            L+CDN++AL I +NPVFHERTKH++IDCHIVR++   G +    +S+  Q AD+ TK L 
Sbjct: 1233 LYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSQQLADILTKPLS 1292

Query: 3025 GTAFRTFLLKLGM 3063
               FR+   KLGM
Sbjct: 1293 PFVFRSHCSKLGM 1305


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  848 bits (2191), Expect = 0.0
 Identities = 453/1032 (43%), Positives = 624/1032 (60%), Gaps = 12/1032 (1%)
 Frame = +1

Query: 4    SPVNLSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTL 183
            SP+N   P+ V LP G H+S TH+G VK ++   L+DVL +P F YNL+S+S+L++  + 
Sbjct: 118  SPIN---PIDVKLPTGQHVSATHSGIVKFTNSFYLVDVLYIPDFTYNLISISKLVSSLSC 174

Query: 184  ECMFSQHKCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGS------VHNNKGVDDLQVWH 345
            + +F +H C +Q+    K      V  GLY    +           VH    +  + +WH
Sbjct: 175  QFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTANNIHNPSTNSIIVHPKCSIQPIDLWH 234

Query: 346  RRLGHTSLSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDI 525
             R+GH S   LQ +    PF + +    CNTCH  KQ +LSFPLS  +  Q F+L+H+DI
Sbjct: 235  FRMGHLSQERLQLMKQSFPFLSVDKSFSCNTCHHDKQKKLSFPLSHSYALQPFDLLHMDI 294

Query: 526  WGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVR 705
            WGP    S+    Y L IVDD TR TW++LM++KSE   HI  FI  V+ QF ++VK +R
Sbjct: 295  WGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKNVKVIR 354

Query: 706  SDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKK 885
            +DNG EF   Q    F+ +GI+HQ +C  TPQQNG+VERKH+H+L + R+L+FQ+ LP  
Sbjct: 355  TDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQANLPSI 411

Query: 886  FWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFE 1065
            FW + L  A  ++N +P+  L   SPFE LY  P      +VFGCLC++S +   R K +
Sbjct: 412  FWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCLCYSSIITSHRTKLD 471

Query: 1066 PRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFH---NGNSSAAEIPLPI 1236
            PRA  CIFLG+    KGY L NL T  + +S++V+FHE +FP     N  S ++ +P+P 
Sbjct: 472  PRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTKPNSPSFSSPVPIPY 531

Query: 1237 QAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDY---VTNT 1407
               ++       +   S+    D  S          L R  R R  P++LQD+    T+T
Sbjct: 532  NYADYPSFPSSSIVESSEPPPPDQHSS------PPPLRRSTRPRRPPTYLQDFHGAFTST 585

Query: 1408 VHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDA 1587
              H ST     G++ P         F     +S ++  ++  IS S ++P +++EA+K  
Sbjct: 586  GPHSST-----GIRHPL------HSFISYDRLSPSFHHYVFSIS-SVTKPKNFVEASKSD 633

Query: 1588 SWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYL 1767
            SW +AM++E++ALE N TW LT+LP  K AIG +WVYK+K  +DG+IDRYKARLVAKGY 
Sbjct: 634  SWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYT 693

Query: 1768 QIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGY 1947
            Q+EG+DF ++FSPVAKL TVR+L++LA      L  +D+NN+FLHG L+EEVYM  P G 
Sbjct: 694  QMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNSFLHGDLNEEVYMQLPPGI 753

Query: 1948 HKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALV 2127
              +  G+VC L+RSLYGLKQASRQW    S  L+  G+V S  D+ LF+K       A++
Sbjct: 754  TPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPAITTAIL 813

Query: 2128 IYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMD 2307
            IYVDD+++ G+    I +L + LH  F IKDLG+ KYFLGLE+ R++ G HLCQRKY +D
Sbjct: 814  IYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYTLD 873

Query: 2308 LLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQ 2487
            LL DTG++  KPVSTP     +++A + TPF D   +RRLVGRL+YL  +RP I+Y VQQ
Sbjct: 874  LLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVGRLIYLPNTRPAIAYAVQQ 933

Query: 2488 LSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSIT 2667
            LSQFV  P  AH      +L YLKGT   G+F  V    Q  A+ D DW  C  TR+SIT
Sbjct: 934  LSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLRAFSDYDWAGCPDTRRSIT 993

Query: 2668 GYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPL 2847
            G+ V+ G+SL               +EAEYR++A T CEL+WL  L  D  +    P  L
Sbjct: 994  GFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDLIRPSIL 1053

Query: 2848 HCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGG 3027
            +CDN+ AL I +NP+FHERTKH++IDCHIVR++   G +    +S+ LQ AD+ TK L  
Sbjct: 1054 YCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSLQLADILTKPLSP 1113

Query: 3028 TAFRTFLLKLGM 3063
              F +   KLGM
Sbjct: 1114 FVFHSHYSKLGM 1125


>gb|PNX96222.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1369

 Score =  844 bits (2181), Expect = 0.0
 Identities = 450/1052 (42%), Positives = 629/1052 (59%), Gaps = 36/1052 (3%)
 Frame = +1

Query: 16   LSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMF 195
            +  P  + +P G  + V + G +   +++ L +VL +P F  NL+SV +L   + L+C  
Sbjct: 320  IDKPFYITVPTGNAVLVENKGRLIFDNDIKLDNVLFIPEFSCNLISVHKLT--HDLDCTV 377

Query: 196  SQHK--CWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKGVDDLQVWHRRLGHTSL 369
            + H   C +QD    K    G +  G+Y+LK      S+  N+  D   +WH RLGH S 
Sbjct: 378  TYHSDFCVIQDRTTRKTIGSGDLLNGVYVLKEKMQGTSLAANQR-DMTTLWHSRLGHPSS 436

Query: 370  SCLQHIP-FLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEP 546
              LQH+   LR  +N N +  C+ CH++KQCRL FP S    E+ F LIH D+WG Y   
Sbjct: 437  QALQHLSHLLRCNFNFNKIIGCDICHKSKQCRLPFPQSINKAEEPFSLIHSDLWGRYHTA 496

Query: 547  SVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEF 726
            +   + Y LTIVDD++RGTW+YL+K K++    +  F  +V+ QF R VK  RSDNG EF
Sbjct: 497  AHDGSHYFLTIVDDYSRGTWVYLLKDKTQATGILMNFCKMVKTQFNRDVKTFRSDNGTEF 556

Query: 727  LSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLL 906
             ++  +    E+GI+H+ SC  TPQQNG VERKHRHIL +ARAL F + LP +FW   +L
Sbjct: 557  TNSVFKAFLREKGIMHETSCVSTPQQNGRVERKHRHILNVARALRFHANLPIRFWGECVL 616

Query: 907  AAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACI 1086
            AA HI+N  P+   +  +P+E+L+ + P YD  KVFGCLC+ +    QR KF PRA  C+
Sbjct: 617  AATHIINRTPTMANKGITPYEMLFGKSPNYDHIKVFGCLCYVATTSKQRDKFGPRADRCV 676

Query: 1087 FLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIP-------LPIQA- 1242
            FLGY  G KG+++YNL T+E  +SRDVVF+E+ FPF      A   P        P +  
Sbjct: 677  FLGYPQGQKGWKVYNLKTREFIVSRDVVFYENVFPFKIDEREAVTDPPRNLFHNTPPRIE 736

Query: 1243 --IEFEEDAGEEVTHVSQ----KQQTDVQSPITDSEITDRLGRGH------------RVR 1368
              I  E +  EE    +Q    ++  +V  P T+        + H            R R
Sbjct: 737  NEISSEGEMAEENDSAAQVNIMEESCEVHVPQTEDNEEILNEKNHHQQTEAMIIMPPRDR 796

Query: 1369 HAPSWLQD---YVTNTVHHGSTTL---KIGGLKKPTTYDL-DCFPFNYSPHMSSTYAVFL 1527
              P++LQD   Y    V    + +     G +   T +   DCF        S  +  FL
Sbjct: 797  KPPAYLQDFHCYAAGEVPPSKSLIFSPSSGKVHSITNFMRNDCF--------SQRHQAFL 848

Query: 1528 SHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIK 1707
            + IS    EPT+Y +A K   WR AMN+EL ALEENETW+L   P GKK +G KWVYKIK
Sbjct: 849  AEISKH-EEPTTYSQAVKHVEWRNAMNQELKALEENETWELDFPPKGKKVVGCKWVYKIK 907

Query: 1708 RNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDIN 1887
              + G I++YKARLVAKGY Q+EG DF E+F+PVAK+ TVR ++++A  + W+LH +D++
Sbjct: 908  YKATGEIEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCMLSVAVAKDWELHQMDVS 967

Query: 1888 NAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQ 2067
            NAFLHG LDEEVYM  PEGY   K G VC L++SLYGL+QASR W  + S  LL +GF++
Sbjct: 968  NAFLHGELDEEVYMKAPEGYALPKIGMVCRLKKSLYGLRQASRNWYSKLSNALLEYGFIE 1027

Query: 2068 STHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLG 2247
            S  D+ LF       +LA++IYVDD++I G++ A     K YL   F +KDLG  KYFLG
Sbjct: 1028 SHADHSLFTYSHQSTFLAVLIYVDDLVIAGNNTAACTKFKKYLSGCFHMKDLGPLKYFLG 1087

Query: 2248 LELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRL 2427
            LEL R   G  +CQRKY +D+L + G++GCKP S P  Q + +   +  P+A+  ++RRL
Sbjct: 1088 LELARGKSGLFICQRKYTLDILNECGMLGCKPSSFPMEQNHRLALASGEPYAEPSRYRRL 1147

Query: 2428 VGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQ 2607
            VGRL+YL ++RP+I+Y V  LSQF+  P +AHWD A+H+L+YLK +   G+  P  +  +
Sbjct: 1148 VGRLIYLTITRPEITYAVHTLSQFMQCPQQAHWDAAMHVLRYLKSSPGQGIVLPRENELK 1207

Query: 2608 FNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCEL 2787
              AY D+DW +C LTR+SI+GY +  G +                +EAEYR+MA    E+
Sbjct: 1208 LVAYSDSDWASCPLTRRSISGYLLKLGAAPISWKTKKQSTVSRSSSEAEYRAMAHATSEI 1267

Query: 2788 KWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFIS 2967
             WL  L   LQ+  + P  L+CDN+AA+H+ ANPV+HERTKH+++DCH +R   + G I 
Sbjct: 1268 LWLRRLLTCLQVDCNSPTTLYCDNQAAMHLAANPVYHERTKHIEVDCHFIREHIQEGTIV 1327

Query: 2968 PQHISTFLQPADLFTKALGGTAFRTFLLKLGM 3063
              ++ T  Q AD+FTK+LG T F++  +KLG+
Sbjct: 1328 TDYVPTKQQQADIFTKSLGSTQFQSLSVKLGV 1359


>gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras
            hygrometricum]
          Length = 1404

 Score =  843 bits (2179), Expect = 0.0
 Identities = 450/1016 (44%), Positives = 624/1016 (61%), Gaps = 6/1016 (0%)
 Frame = +1

Query: 34   VHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQHKCW 213
            V LP+   I VT AG V ++  + L +VL VP F++NLLSVS L   +     F    C 
Sbjct: 417  VVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVPVFQFNLLSVSSLTDNHNCSVSFMSDSCK 476

Query: 214  LQDPRDGKVQAVGRVFAGLYILKLSE-FCGSVHNNKGVDDLQVWHRRLGHTSLSCLQHIP 390
            +QD    ++  +G+    LY+L+  + F  S   N  V + ++WHRR+GH S + L  + 
Sbjct: 477  IQDISQIRMIGMGKRIGNLYVLQQPDRFLPSYICNTFVSNSELWHRRMGHPSFNKLSSLK 536

Query: 391  FLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYM 570
             +    N ++++IC++CH +KQ RL        + + FEL+HID WGP+ + SV    + 
Sbjct: 537  NVLNIENTDIVNICHSCHLSKQRRLPLASRNNISARIFELLHIDTWGPFSQTSVDGFRFF 596

Query: 571  LTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNL 750
             TIVDD +R TW+Y++K KS++      F  +V  QF  +VK VRSDN  E       + 
Sbjct: 597  FTIVDDHSRYTWVYMLKSKSDVLSIFPDFCRMVSTQFGVTVKSVRSDNAPEL---GFADF 653

Query: 751  FAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNS 930
            FA+ GI H  SC   PQQN VVERKH+HIL +ARAL+FQS +P  +W   +  +V+++N 
Sbjct: 654  FAKAGITHYHSCVERPQQNSVVERKHQHILNVARALLFQSHIPLDYWCDCINTSVYLINR 713

Query: 931  LPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGI 1110
             PS +L  K+PFELL+ + P Y   KVFGCLC+AS L   R KF PRA  C+F+GY  G 
Sbjct: 714  TPSPILAHKTPFELLHGKLPSYSHLKVFGCLCYASTLLSSRHKFSPRAIRCVFIGYPPGY 773

Query: 1111 KGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAIEFEEDAGEEVTHVSQ 1290
            KGY+L NL+T E+FISRDV+FHE+ FP+ N +      P+ +  + FE     ++T    
Sbjct: 774  KGYKLLNLETNEIFISRDVIFHENTFPYQNTS------PMSLSDMTFEVSPSSQIT---- 823

Query: 1291 KQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDL 1470
                   S   D++   R  R H   + PS L+DY   ++    +T         T + +
Sbjct: 824  ------PSIPADAQQHSRTSRPH---NTPSHLRDYHCYSISTPCST--------STAHPI 866

Query: 1471 DCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQL 1650
                 NYS  +SS++  F+ +IS S  EPT++ +A     WR+AM++EL ALE N TW +
Sbjct: 867  HPL-VNYSK-LSSSHRAFVQNIS-SILEPTTFSQAVSLPEWRQAMDEELKALELNHTWSI 923

Query: 1651 TSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVR 1830
             SLP GK A+G +WVYK K  +DG++ RYKARLVAKGY Q EG+D++E+FSPVAKLVTVR
Sbjct: 924  VSLPQGKSAVGCRWVYKAKFAADGSLQRYKARLVAKGYTQQEGLDYLETFSPVAKLVTVR 983

Query: 1831 MLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGE-----VCLLRRSLY 1995
             L+ALA  R W L  +D+NNAFLHG L EEVYM  P G+    +GE     VC L +S+Y
Sbjct: 984  TLLALAAVRGWFLIQLDVNNAFLHGDLTEEVYMTLPPGF--CSEGELPSRAVCKLHKSIY 1041

Query: 1996 GLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALI 2175
            GLKQASRQW  +FS  LL  GF+QS  DN LF++ D   +LALV+YVDD++I  +     
Sbjct: 1042 GLKQASRQWFAKFSSTLLSIGFIQSHADNSLFIRSDKNIFLALVVYVDDIVIATNDQNAA 1101

Query: 2176 QNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTP 2355
              LK +L+  F +KDLG+ KYFLG+E+ RS +G  +CQR Y M LL + GL+GCKP +TP
Sbjct: 1102 SELKDFLNSKFKLKDLGNLKYFLGIEVARSTRGVSICQRNYAMTLLTEAGLLGCKPRTTP 1161

Query: 2356 FPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVA 2535
                  +   +    +D   +RRL+GRLLYL ++RPD+ + V +LSQ+V  P   H + A
Sbjct: 1162 MEANTKLAQDSGEMLSDPASYRRLIGRLLYLTITRPDLVFAVNKLSQYVSMPRIPHMEAA 1221

Query: 2536 IHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXX 2715
            +++LKY+KGT+  GLFY      +  A+ DADWG CL TR+S+TGYCVF G SL      
Sbjct: 1222 LNILKYVKGTVGQGLFYSSSSDLKLRAFSDADWGACLDTRRSVTGYCVFLGESLISWRAK 1281

Query: 2716 XXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVF 2895
                     AEAEYRS+AA+ CE+ W++ L  DL ++ + P  L CD++AA+HI +NPVF
Sbjct: 1282 KQQTVSRSSAEAEYRSLAASTCEILWIHQLLADLGVTYNEPTVLFCDSQAAVHIASNPVF 1341

Query: 2896 HERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 3063
            HERTKH+DIDCHIVR + +   +   H+S+  Q ADLFTK L  + F   L K+G+
Sbjct: 1342 HERTKHIDIDCHIVREKVQQKIVKLMHVSSERQLADLFTKPLLPSRFHNLLKKMGV 1397


>gb|PNX92904.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1457

 Score =  845 bits (2182), Expect = 0.0
 Identities = 452/1054 (42%), Positives = 622/1054 (59%), Gaps = 32/1054 (3%)
 Frame = +1

Query: 22   TPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQ 201
            TP  V LP+G        G + L + + L +VL VP+    L+SVS+L+        F++
Sbjct: 412  TPRPVGLPNGKQTDAVKEGTLCLGENIYLQNVLYVPNMNCTLISVSKLVQDLRCIVTFTE 471

Query: 202  HKCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKG--VDDLQVWHRRLGHTSLSC 375
            + C +QD     +  VG    G++I + +     +H NK   +D  ++WH+RLGH S   
Sbjct: 472  NLCVMQDRTSRTLIGVGEECDGIFIFRRA---APMHANKAKVMDVRRLWHQRLGHPSKQV 528

Query: 376  LQHIP-FLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSV 552
            L ++P  +      +++D C TC++AKQ R  F  S    +  F LIH D+WGPY  P+ 
Sbjct: 529  LSYLPETISSDLGSDLVDFCETCYKAKQTRDVFQESNNKVDDCFSLIHCDLWGPYKVPAS 588

Query: 553  TNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLS 732
                Y LTIVDDF+R  W+YL+  K E+   I  F A+ + QF++ VK VRSDNG EF  
Sbjct: 589  CGAFYFLTIVDDFSRAIWVYLLLEKKEVSQTIKNFCAMTERQFEKPVKIVRSDNGTEFTC 648

Query: 733  NQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAA 912
               ++ F  +GILHQ SC  TPQQNG VERKHRHIL +ARAL FQ+ LP +FW   +L A
Sbjct: 649  --LKSYFEVKGILHQTSCVGTPQQNGRVERKHRHILNVARALRFQANLPIQFWGECVLTA 706

Query: 913  VHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFL 1092
             +++N  PS+LL+ KSP+E+L+K+ P Y++ KVFGCLC+    G  + KF  R+  C+FL
Sbjct: 707  SYLINRTPSSLLRGKSPYEVLFKKKPIYNQLKVFGCLCYVHHRGRDKDKFSERSKKCVFL 766

Query: 1093 GYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAIEF------- 1251
            GY  G KG+R+Y+L T E F+SRDVVFHES FP+        +       +E+       
Sbjct: 767  GYPYGKKGWRVYDLKTGEYFVSRDVVFHESTFPYVVDKDMVKDCEEEAHQVEYAWFDDAP 826

Query: 1252 -------------------EEDAGEEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHA 1374
                                 D  EE   V  ++  D  +  T+ E   +LG+G R+   
Sbjct: 827  DKDEVDERVLERGRLDSCENNDRNEECKTVVNEEVGD-DTNHTEQEHMQQLGKGKRISQP 885

Query: 1375 PSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPF-NY--SPHMSSTYAVFLSHISNS 1545
               L+D+VT T      +          +     +P  NY  S   S  Y  FL+ +++ 
Sbjct: 886  SVRLKDFVTYTARCSKDSPHTQSHSISRSSGTTPYPITNYVTSAKFSPRYCAFLAAVTDE 945

Query: 1546 ASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGT 1725
              EPTS+  A KDA WREAM KE+ ALE NETW L +LP GKKAIG KWVYKIK NSDGT
Sbjct: 946  -DEPTSFSIAVKDARWREAMKKEIEALENNETWTLETLPPGKKAIGCKWVYKIKYNSDGT 1004

Query: 1726 IDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHG 1905
            ++RYKARLV  G  QIEG+D+ E+F+PVAK+ TVR L+A+A  + W+LH +D++NAFLHG
Sbjct: 1005 VERYKARLVILGNRQIEGLDYNETFAPVAKMATVRTLIAVAAAKNWELHQMDVHNAFLHG 1064

Query: 1906 YLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNC 2085
             L EEVYM  P G+    K +VC LR+SLYGL+QA R W  + +  L  +GF QS  D  
Sbjct: 1065 DLSEEVYMHLPPGFSTTHKSKVCRLRKSLYGLRQAPRCWFFKLATALKEYGFEQSKSDYS 1124

Query: 2086 LFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRS 2265
            LF    +   L ++IYVDD++I G+    +   K YL + F +KDLG  KYFLG+E+ R 
Sbjct: 1125 LFTYSSNKVQLNVLIYVDDLVIAGNVVKAVIEFKQYLSKCFHMKDLGELKYFLGIEVARG 1184

Query: 2266 NQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLY 2445
             QG  LCQRKY +D++ + GL+G KP   P  Q + +         +  ++RRLVGRL+Y
Sbjct: 1185 PQGIFLCQRKYALDIVSEAGLLGAKPALFPMEQNHQLAMAQGEAMENPEQYRRLVGRLIY 1244

Query: 2446 LNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCD 2625
            L ++RP++SY V  L+QF+  P EAHW+ A+ +++YLKG    G+        Q  AYCD
Sbjct: 1245 LTITRPELSYCVHVLAQFMQHPQEAHWEAALRVVRYLKGKPGQGIVLHANTDLQLTAYCD 1304

Query: 2626 ADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNL 2805
            +DW +C LTR+S+TGY VF  +S                AEAEYRSMAA VCELKW+  L
Sbjct: 1305 SDWASCPLTRRSLTGYVVFLNSSPVSWKTKKQHTVSRSSAEAEYRSMAAAVCELKWMKGL 1364

Query: 2806 GLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHIST 2985
               L +S + P+ LHCD++AALHI  NPVFHERTKH+++DCH VR++ + G I+  ++ T
Sbjct: 1365 LASLGVSHTSPMQLHCDSQAALHIATNPVFHERTKHIEVDCHFVRDEIQCGNIATSYVRT 1424

Query: 2986 FLQPADLFTKALGGTAFRTFLLKLGMCSSTHIPT 3087
              Q AD+ TKALG   F   + KLG+  + H PT
Sbjct: 1425 TNQLADILTKALGRQQFEYLISKLGI-QNLHAPT 1457


>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1353

 Score =  840 bits (2170), Expect = 0.0
 Identities = 457/1056 (43%), Positives = 640/1056 (60%), Gaps = 30/1056 (2%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECM--FS 198
            P+ + LP+G+ +S   +G V LS    L DVL +P+F +NL+SVS+L    TL C   FS
Sbjct: 316  PILIQLPNGSQVSTCVSGTVLLSKTCYLTDVLFIPNFHFNLISVSKL--AKTLSCTLTFS 373

Query: 199  QHKCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKG---VDDLQVWHRRLGHTSL 369
               C +Q     ++     + AGLY +  S     VH+           +WH RLGH S 
Sbjct: 374  DSDCQIQANHSMRMIGAAELRAGLYAMVSSPESNVVHHCTSHFFTYQSDLWHLRLGHLSH 433

Query: 370  SCLQHIPFLRPFYNKNVLDI-CNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEP 546
              L  +    P    N + + C  CH AK  RL FP S   +E  F+LIH+DIWGP    
Sbjct: 434  DKLSALKGSYPEIQCNKISLPCEICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVA 493

Query: 547  SVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEF 726
            S+    Y LTIVDD +R TWI+ MK+K E  L +  F++ VQ QFQ+++K +R+DNG+EF
Sbjct: 494  SIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEF 553

Query: 727  LSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLL 906
            L    ++ +A+ GI+HQ SC  TPQQNGVVERKH+HIL +ARALMFQS + K FW Y + 
Sbjct: 554  L---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAIG 610

Query: 907  AAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACI 1086
             AVH++N LP+  LQ  SP+ +LY E P +   KVFGCL FAS L   R K EPR+  C+
Sbjct: 611  HAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCM 670

Query: 1087 FLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNS---------SAAEIPLP-- 1233
            FLGY +G KG+ +Y+L T+E FISRDV F+E+ FP     S           A++PL   
Sbjct: 671  FLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMPLTSC 730

Query: 1234 ----------IQAIEFEEDAGE-EVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPS 1380
                      +   E E ++    +T+ S   Q +++  I +   T +     RV++ P 
Sbjct: 731  DPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQ-----RVKNRPG 785

Query: 1381 WLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSAS--E 1554
            +LQDY     H      K+        Y +     +Y P+ S + AV  S +S  +S  E
Sbjct: 786  YLQDY-----HCTLAASKVDQSSSTARYPIS----DYLPYTSYS-AVQQSFVSTISSIIE 835

Query: 1555 PTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDR 1734
            P SY +A     W+EA+  EL AL++ +TW LT LP  K+A+G +WV+K+K ++DG+++R
Sbjct: 836  PRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYHADGSVER 895

Query: 1735 YKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLD 1914
            YKARLVAKG+ QI G+D++++FSPV ++ T+R+ +A+A    W +H +DIN AFLHG L 
Sbjct: 896  YKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTAFLHGDLV 955

Query: 1915 EEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFV 2094
            EEVYM PP G   +   +VC L++SLYGLKQ SRQWN++ +E L  FGFVQS  D  LF 
Sbjct: 956  EEVYMKPPPGLILSSPNKVCKLQKSLYGLKQVSRQWNIKLTETLKLFGFVQSKSDYSLFT 1015

Query: 2095 KHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQG 2274
            K  + G++A+++YVDD++I+G     I  +K  L + F+IKDLG   YFLGLE  RS+QG
Sbjct: 1016 KRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQG 1075

Query: 2275 THLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNL 2454
              +CQRKY ++LL+DTGL+  KP STP      +       ++D   +RRLVGRL+YL  
Sbjct: 1076 ISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTH 1135

Query: 2455 SRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADW 2634
            +RPD+++ V +LSQF+H P  AH+  A  +L+Y+K T + GLF+P     +   Y D+DW
Sbjct: 1136 TRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDW 1195

Query: 2635 GTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLD 2814
             TC  +R+SI+G+C F GN+L               +EAEYR++A  VCE +WL+ L  D
Sbjct: 1196 ATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTD 1255

Query: 2815 LQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQ 2994
             QL   +PI L CDN++AL+I ANPVFHERTKH++IDCH VR+Q +AGFI    I++  Q
Sbjct: 1256 FQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQ 1315

Query: 2995 PADLFTKALGGTAFRTFLLKLGMCSSTHIPT*RGGV 3102
             AD+ TK L    F+ F+ KLG+ + T  P+ R GV
Sbjct: 1316 LADILTKPLLPKMFQDFVCKLGLSNFT-TPSLREGV 1350


>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1423

 Score =  842 bits (2174), Expect = 0.0
 Identities = 458/1056 (43%), Positives = 641/1056 (60%), Gaps = 30/1056 (2%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECM--FS 198
            P+ + LP+G+ +S   +G V LS    L DVL +P+F +NL+SVS+L    TL C   FS
Sbjct: 386  PILIQLPNGSQVSTCVSGTVLLSKTCYLTDVLFIPNFHFNLISVSKL--AKTLSCTLTFS 443

Query: 199  QHKCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKG---VDDLQVWHRRLGHTSL 369
               C +Q     ++     + AGLY +  S     VH+           +WH RLGH S 
Sbjct: 444  DSDCQIQANHSMRMIGAAELRAGLYAMVSSPESNVVHHCTSHFFTYQSDLWHLRLGHLSH 503

Query: 370  SCLQHIPFLRPFYNKNVLDI-CNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEP 546
              L  +    P    N + + C  CH AK  RL FP S   +E  F+LIH+DIWGP    
Sbjct: 504  DKLSALKGSYPEIQCNKISLPCEICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVA 563

Query: 547  SVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEF 726
            S+    Y LTIVDD +R TWI+ MK+K E  L +  F++ VQ QFQ+++K +R+DNG+EF
Sbjct: 564  SIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEF 623

Query: 727  LSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLL 906
            L    ++ +A+ GI+HQ SC  TPQQNGVVERKH+HIL +ARALMFQS + K FW Y + 
Sbjct: 624  L---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAIG 680

Query: 907  AAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACI 1086
             AVH++N LP+  LQ  SP+ +LY E P +   KVFGCL FAS L   R K EPR+  C+
Sbjct: 681  HAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCM 740

Query: 1087 FLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNS---------SAAEIPLP-- 1233
            FLGY +G KG+ +Y+L T+E FISRDV F+E+ FP     S           A++PL   
Sbjct: 741  FLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMPLTSC 800

Query: 1234 ----------IQAIEFEEDAGE-EVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPS 1380
                      +   E E ++    +T+ S   Q +++  I +   T +     RV++ P 
Sbjct: 801  DPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQ-----RVKNRPG 855

Query: 1381 WLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSAS--E 1554
            +LQDY     H      K+        Y +     +Y P+ S + AV  S +S  +S  E
Sbjct: 856  YLQDY-----HCTLAASKVDQSSSTARYPIS----DYLPYTSYS-AVQQSFVSTISSIIE 905

Query: 1555 PTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDR 1734
            P SY +A     W+EA+  EL AL++ +TW LT LP  K+A+G +WV+K+K ++DG+++R
Sbjct: 906  PRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYHADGSVER 965

Query: 1735 YKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLD 1914
            YKARLVAKG+ QI G+D++++FSPV ++ T+R+ +A+A    W +H +DIN AFLHG L 
Sbjct: 966  YKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTAFLHGDLV 1025

Query: 1915 EEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFV 2094
            EEVYM PP G   +   +VC L++SLYGLKQASRQWN++ +E L  FGFVQS  D  LF 
Sbjct: 1026 EEVYMKPPPGLILSSPNKVCKLQKSLYGLKQASRQWNIKLTETLKLFGFVQSKSDYSLFT 1085

Query: 2095 KHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQG 2274
            K  + G++A+++YVDD++I+G     I  +K  L + F+IKDLG   YFLGLE  RS+QG
Sbjct: 1086 KRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQG 1145

Query: 2275 THLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNL 2454
              +CQRKY ++LL+DTGL+  KP STP      +       ++D   +RRLVGRL+YL  
Sbjct: 1146 ISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTH 1205

Query: 2455 SRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADW 2634
            +RPD+++ V +LSQF+H P  AH+  A  +L+Y+K T + GLF+P     +   Y D+DW
Sbjct: 1206 TRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDW 1265

Query: 2635 GTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLD 2814
             TC  +R+SI+G+C F GN+L               +EAEYR++A  VCE +WL+ L  D
Sbjct: 1266 ATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTD 1325

Query: 2815 LQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQ 2994
             QL   +PI L CDN++AL+I ANPVFHERTKH++IDCH VR+Q +AGFI    I++  Q
Sbjct: 1326 FQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQ 1385

Query: 2995 PADLFTKALGGTAFRTFLLKLGMCSSTHIPT*RGGV 3102
             AD+ TK L    F+ F+ KLG+ + T  P+ R GV
Sbjct: 1386 LADILTKPLLPKMFQDFVCKLGLSNFT-TPSLREGV 1420


>gb|PNX92993.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1472

 Score =  842 bits (2175), Expect = 0.0
 Identities = 446/1057 (42%), Positives = 628/1057 (59%), Gaps = 39/1057 (3%)
 Frame = +1

Query: 34   VHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQHKCW 213
            V LP+G  I+ T  G + LS+++ L  VL VP+ + NL+SVSQL+        F+   C 
Sbjct: 420  VGLPNGNQIAATREGTLVLSEKLKLAQVLYVPNLQCNLISVSQLIDEFNYTVQFTNKFCI 479

Query: 214  LQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKGVDDLQVWHRRLGHTSLSCLQHIPF 393
            +QD     V   G    GLY  K      +       + L +WH+RLGH S   ++ IP 
Sbjct: 480  IQDLTSKMVIGAGEQREGLYYFKHVAVAATATTINTPNYLTLWHQRLGHASFQVMKKIPN 539

Query: 394  L-RPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYM 570
            L     N +    C+ C  AKQ R  FP+S     Q F+LIH D+WGPY   ++    Y 
Sbjct: 540  LWNDKQNNSCTKTCDVCLRAKQIRDVFPISNNKAMQNFQLIHCDVWGPYRTLAMCGARYF 599

Query: 571  LTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNL 750
            LTIVDD +R  W+YL+  K E+ +H+ +F+ +V+ QF   VK +RSDNG EF      + 
Sbjct: 600  LTIVDDHSRAVWVYLLNDKKEVSVHLRQFLIMVERQFDMRVKTIRSDNGTEFTC--LGHY 657

Query: 751  FAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNS 930
            F E GILH+ SCP TPQQNG VERKHRHIL +ARAL FQ+ LP  FW   +LAA +++N 
Sbjct: 658  FREHGILHETSCPGTPQQNGRVERKHRHILNVARALRFQANLPIDFWGECILAAGYLINR 717

Query: 931  LPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGI 1110
             PS++L  K+PFELLY + P     +VFGCLC+      +  KFE R+  CIF+GY  G 
Sbjct: 718  TPSSILNGKTPFELLYGKSPPLTHLRVFGCLCYVHNQDRRGDKFESRSRRCIFVGYPYGK 777

Query: 1111 KGYRLYNLDTKEVFISRDVVFHESNFPFH---------------------------NGNS 1209
            KG+R+Y+L+T    ISRDVVF E  FPFH                           +GN+
Sbjct: 778  KGWRVYDLETSAFLISRDVVFCEDTFPFHKSLNHPMSQPSTADMWTYDCDNNEHLIDGNN 837

Query: 1210 SAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDR-----------LGRG 1356
            S+ E  L +  +    + G E++ V+  Q +   S  ++    D+           LGRG
Sbjct: 838  SSNETHLFVDGVGDSVNTGTELSDVNDGQNSAATSAGSNINNEDKGGSENINGEEKLGRG 897

Query: 1357 HRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHI 1536
            HR++   + L+ +VT+ V + S +       + +        F  S + S  Y  FL+ I
Sbjct: 898  HRIKMPSTKLKGFVTHAVCNLSPSTSSLPPSQSSGTPYPIAHFVNSSNFSPKYQYFLAAI 957

Query: 1537 SNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNS 1716
            + + +EP ++ EA K   WR AM  E+ ALE N TW + +LP GKK+IG KWVYKIK +S
Sbjct: 958  T-AGNEPRTFAEAVKYKQWRTAMQLEIQALENNNTWTVETLPHGKKSIGCKWVYKIKYHS 1016

Query: 1717 DGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAF 1896
            DG+I+RYKARLV  G  Q+EG+D+ E+F+PVAK+VTVR  +A+A  R+W+LH +D++NAF
Sbjct: 1017 DGSIERYKARLVILGNNQVEGLDYNETFAPVAKMVTVRTFLAVAAARKWELHQMDVHNAF 1076

Query: 1897 LHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTH 2076
            LHG L+EE+YM  P G+H +   + C LR+SLYGLKQA R W  + S  L  +GF QS  
Sbjct: 1077 LHGDLEEEIYMKLPPGFHSSAPNQACRLRKSLYGLKQAPRCWFAKLSAALKKYGFKQSGS 1136

Query: 2077 DNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLEL 2256
            D  LF  H     L +++YVDD++++G+  + IQ+ K YL   F +KDLG  +YFLG+E+
Sbjct: 1137 DYSLFTLHKGHVQLNVLVYVDDLIVSGNDTSAIQSFKNYLSTCFYMKDLGMLRYFLGIEV 1196

Query: 2257 MRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGR 2436
             R++ G  LCQRKY +D++ + G++G KP   P  Q ++++       ++  K+RRLVGR
Sbjct: 1197 ARNSTGIFLCQRKYALDIISEVGMLGAKPAQIPMDQNHHLSLVDGPLLSEPEKYRRLVGR 1256

Query: 2437 LLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNA 2616
            L+YL+++RP++SY V  L+QF+  P   HW+ A+ ++KYLKG    G+F       Q  A
Sbjct: 1257 LIYLSVTRPELSYCVHMLAQFMQQPRLPHWEAALRVVKYLKGNPGQGIFLRADSDLQLYA 1316

Query: 2617 YCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWL 2796
            +CD+DW +C LTR+S+TG+ +  GNS                AEAEYRS+A T CELKWL
Sbjct: 1317 WCDSDWASCPLTRRSLTGWLILLGNSPISWKTKKQHTVSRSSAEAEYRSLATTTCELKWL 1376

Query: 2797 YNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQH 2976
              L   L +S   P+ ++CD++AA+HI ANPVFHERTKH+++DCH VR++   G IS  +
Sbjct: 1377 KELLSFLGVSHQRPMKVYCDSQAAMHIAANPVFHERTKHIEVDCHFVRDELLCGNISTHY 1436

Query: 2977 ISTFLQPADLFTKALGGTAFRTFLLKLGMCSSTHIPT 3087
            +ST  Q AD+FTKALG   F  FL KLG+  + H PT
Sbjct: 1437 VSTRTQLADIFTKALGKQQFDYFLGKLGI-QNLHAPT 1472


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  828 bits (2139), Expect = 0.0
 Identities = 451/1024 (44%), Positives = 628/1024 (61%), Gaps = 13/1024 (1%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH 204
            P++++LP+G+ +    +G+++LS +  + DVL VP+F +NLLS+ +LL       +FS  
Sbjct: 84   PLNINLPNGSIVQAHFSGSIQLSPDFVIHDVLFVPNFSFNLLSLPKLLLTAPCRVIFSNQ 143

Query: 205  ----KCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKG---VDDLQVWHRRLGHT 363
                 C +QD    K+     +  GL+ L + +   S  NN     +++  +WH RLGH 
Sbjct: 144  FSNILCQIQDMNTLKMIGSANLKEGLFHLDIGKERRSSTNNATATPINNSNLWHFRLGHL 203

Query: 364  SLSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLE 543
            S + L  +    PF +K+  ++C+ CH AKQ +LS+  S+    + F+LIH+DIWGP+ +
Sbjct: 204  SSNRLNVLNQQFPFISKHSNEVCDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGPFSK 263

Query: 544  PSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAE 723
             S+    Y LTI+DDF+R TW+ L+K KSE+  H+  FI LV+NQ++  VK +RSDNG E
Sbjct: 264  ASIHGHKYFLTILDDFSRYTWVVLLKSKSEVKTHVHNFINLVENQYETKVKCIRSDNGPE 323

Query: 724  FLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTL 903
            F     ++ F  +GI+HQ SC YTPQQNG VERKH+HIL +ARALMFQSKLP  FW Y +
Sbjct: 324  FF---LRDFFNSKGIIHQTSCVYTPQQNGRVERKHQHILNVARALMFQSKLPSNFWSYAI 380

Query: 904  LAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASAC 1083
              A+ ++N +PS ++  K+PFELL K PP +   KVFGCLC+AS    QR KFEPR+   
Sbjct: 381  KHAIFLINRVPSPIISHKTPFELLNKIPPDFSMLKVFGCLCYASTHN-QRHKFEPRSRKG 439

Query: 1084 IFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAIEFEEDA 1263
            IF+G+  G KG+ + +++T+E+ +SR+V+FHE++FPFH    ++  I  P   I    D 
Sbjct: 440  IFMGFQNGTKGFVILDINTREILVSRNVIFHETSFPFHTSAPTSPFITQPSLTISPNPDI 499

Query: 1264 GEEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNT-----VHHGSTT 1428
                   S    +  Q+P  D+  +             S +  Y T+T      HH S++
Sbjct: 500  -LTTPPTSPNDTSPSQNPNPDASASPSSPAAPTSPFHDS-ISSYPTSTDFDIVPHHRSSS 557

Query: 1429 LKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMN 1608
              I     P   + D  P    P   S Y   L  + +  S   S     ++  WREAM 
Sbjct: 558  PAI---PPPRRSERDIHP----PPYLSEYQYKLPSLKSVQSSTRSI----QNPCWREAMT 606

Query: 1609 KELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDF 1788
             EL ALE N TW +   P+  + IG KWV+KIKR  +G+I+RYKARLVAKGY QIEG+D+
Sbjct: 607  CELKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPNGSIERYKARLVAKGYSQIEGIDY 666

Query: 1789 MESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGE 1968
             E+FSPV K+ TVR+++ALA+  QW +  +D++NAFLHG L E+VYM  P+G        
Sbjct: 667  FETFSPVVKMTTVRVVLALASINQWHIQQLDVSNAFLHGDLLEDVYMELPQGLTGYSSSH 726

Query: 1969 VCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVL 2148
             C LR+SLYGLKQ+SR+W  + S  LL  G+ Q+  D+ LF K     + AL+IYVDD++
Sbjct: 727  SCKLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSDHSLFTKRHGSAFTALLIYVDDIV 786

Query: 2149 ITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGL 2328
            +TG+SAA I  +K  LH  F +KDLG  KYFLG+E+  S++G  LCQRKY +DLL D+G+
Sbjct: 787  LTGNSAAEITRIKHILHSNFHVKDLGQLKYFLGIEVAHSSKGISLCQRKYCLDLLSDSGM 846

Query: 2329 MGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHA 2508
            +GCKP STP      +   AS    D   +RRLVGRL+YL  +RPDI++  QQLSQF+  
Sbjct: 847  LGCKPSSTPMDSTLRLHDDASGYLDDPLPYRRLVGRLVYLTNTRPDIAFSTQQLSQFMSK 906

Query: 2509 PTEAHWDVAIHLLKYLKGTISLGLFYPVGDCP-QFNAYCDADWGTCLLTRKSITGYCVFF 2685
            PT AH   A+ +L+YLK     GLF+P   CP Q + + DADW TC+ +R+SITGYC F 
Sbjct: 907  PTNAHHAAAMRVLRYLKSCPGTGLFFP-RVCPIQVSGFSDADWATCVASRRSITGYCFFI 965

Query: 2686 GNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKA 2865
            GN+L               +EAEYR++A+  CEL+W+  L  DL +S S    L+CDN +
Sbjct: 966  GNALISWKTKKQTTVSRSSSEAEYRALASATCELQWIIYLLRDLHISLSQISLLYCDNTS 1025

Query: 2866 ALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTF 3045
            ALHI ANPVFHERTKHLDIDCHIVR + +AG +    + +  Q AD+FTKAL   AF+  
Sbjct: 1026 ALHIAANPVFHERTKHLDIDCHIVREKTQAGLMKLLPVPSAKQLADIFTKALPPHAFKLN 1085

Query: 3046 LLKL 3057
            L KL
Sbjct: 1086 LSKL 1089


>gb|PNX93476.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1454

 Score =  839 bits (2168), Expect = 0.0
 Identities = 456/1049 (43%), Positives = 623/1049 (59%), Gaps = 28/1049 (2%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH 204
            P  + +PDG H++   AG   L D +T+  VL VP    NL+S S+L+         +  
Sbjct: 414  PSPIIMPDGGHVNAVQAGTATLGDNLTIQHVLYVPRLTCNLISFSKLIKDLNCVVTLTDK 473

Query: 205  KCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKGVDDLQVWHRRLGHTSLSCLQH 384
             C +QD     V  VG    G+Y L+       + +    D  QVWHRRLGH S   +  
Sbjct: 474  LCVIQDHISRMVIGVGEERDGVYWLRSMAPTNRLCHATDADSYQVWHRRLGHPSSQIVCL 533

Query: 385  IPFL-RPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNT 561
            +P +     ++N  + C+ C +AKQ R SFP+S+   +  FELIH D+WGPY  PS    
Sbjct: 534  LPGVSNNNCSRNKDEPCDVCFKAKQTRTSFPISSSKADDLFELIHCDVWGPYSVPSSCGA 593

Query: 562  SYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQT 741
            SY LTIVDD +RG WIYLM +K+E+   I  F A+ Q QF + VKR+RSDNG EF S   
Sbjct: 594  SYFLTIVDDHSRGVWIYLMANKTEVAKLIKNFCAMTQTQFNKIVKRIRSDNGTEFTS--L 651

Query: 742  QNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHI 921
            +N FA +GI  + SC  TPQQNG  ERKHRHIL +ARAL FQ+ LP +FW   +L A ++
Sbjct: 652  RNYFATQGISFETSCVGTPQQNGRAERKHRHILNVARALRFQANLPIEFWGECILTAGYL 711

Query: 922  LNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYV 1101
            +N  P++ LQ K+P+ +++   P Y+  K FGCLCFASK+   R KF PR+  CIF+GY 
Sbjct: 712  INRTPTSALQGKTPYHVIFGHNPIYNHIKTFGCLCFASKIPRDRDKFAPRSRKCIFVGYP 771

Query: 1102 TGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSA---------------------- 1215
             G KG+RLY++DT++ F SRDVVF+E++FP+ +  SS+                      
Sbjct: 772  YGKKGWRLYDIDTRDYFNSRDVVFYENHFPYKHSISSSPTATNTVHPAVYDMEFVVHTTS 831

Query: 1216 --AEIPLPIQAIEFEEDAGEEVTHV--SQKQQTDVQSPITDSEITDRLGRGHRVRHAPSW 1383
              A  P PIQ      +   ++  V  S    TD  +  +DS +     R  RVR     
Sbjct: 832  QDATFPPPIQEQVSTTNNDIDMLEVRGSDHVMTDPATISSDSNVR----RSTRVRQQSVR 887

Query: 1384 LQDYVTNTVHHGSTTLKIGGLKKPT-TYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPT 1560
            L+D+V +T               P+ T       +    + S++++ FL+ ++ +  EPT
Sbjct: 888  LRDHVCHTARRFDPPSASSSQSPPSGTTPYPIANYVTCNNFSTSHSRFLAAVT-AGFEPT 946

Query: 1561 SYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYK 1740
             + EA + + WR+AM KE+ ALE N TW +  LP GKK IG KWVYKIK NS+GTI+R+K
Sbjct: 947  RFSEAVRYSPWRDAMRKEIEALENNGTWTIEDLPPGKKTIGCKWVYKIKYNSNGTIERHK 1006

Query: 1741 ARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEE 1920
            ARLV  G  Q+ GVDF E+F+PVAK+V++R+ +A+A    W+LH +D++NAFLHG LDEE
Sbjct: 1007 ARLVVLGNNQVAGVDFNETFAPVAKMVSIRVFLAVAVIHGWELHQMDVHNAFLHGDLDEE 1066

Query: 1921 VYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKH 2100
            VYM  P G+     G+VC LR+SLYGL+QA R W  + +  L  FGFVQS  D  LF   
Sbjct: 1067 VYMCLPPGFSGVSPGKVCRLRKSLYGLRQAPRNWFSKLASALKSFGFVQSYADYSLFSLE 1126

Query: 2101 DDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTH 2280
              G  L +++YVDD++I G+ +A I N K YL   F +KDLG  KYFLGLE+ R   G  
Sbjct: 1127 RHGIVLHILVYVDDLIIAGNDSAAIANFKAYLSTCFHMKDLGTLKYFLGLEIARGPDGLF 1186

Query: 2281 LCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSR 2460
            + QRKY +D++ + GL+G KP   P  Q + +    S        +RRLVGRL+YL ++R
Sbjct: 1187 ISQRKYALDIISEAGLLGAKPCDFPMEQNHQLALDTSPNLEHPDCYRRLVGRLIYLTITR 1246

Query: 2461 PDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGT 2640
            P++ Y V  L+QF+ +P EAHW+ A+ +L YLKG    GLF       Q  AYCD+D+ T
Sbjct: 1247 PELCYAVHTLAQFMQSPKEAHWNSALRILHYLKGHPGQGLFLSKDSSLQLTAYCDSDYAT 1306

Query: 2641 CLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQ 2820
            C LTR+S+TGY +  G S                AEAEYRSMA T CEL WL +L   L 
Sbjct: 1307 CPLTRRSLTGYFIMLGVSPVSWKTKKQPTVSRSSAEAEYRSMATTSCELIWLKSLLKSLG 1366

Query: 2821 LSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPA 3000
            +  S+P+ L CD++AALHI ANPVFHERTKH+++DCH VR+Q +AG I+  ++ T +Q A
Sbjct: 1367 VRHSMPMRLFCDSQAALHIAANPVFHERTKHIEVDCHFVRDQIQAGNIATFYVRTNMQLA 1426

Query: 3001 DLFTKALGGTAFRTFLLKLGMCSSTHIPT 3087
            D+FTKALG   F+  L KLG+  + H PT
Sbjct: 1427 DIFTKALGKQQFQFLLSKLGI-RNLHAPT 1454


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  834 bits (2154), Expect = 0.0
 Identities = 457/1044 (43%), Positives = 628/1044 (60%), Gaps = 28/1044 (2%)
 Frame = +1

Query: 16   LSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMF 195
            L  PV V+LP G  ++ TH+G V  S    L DVL + SF +NL+SVS+L++  + +  F
Sbjct: 333  LIEPVIVNLPTGHKVTATHSGTVYFSSNFQLTDVLYISSFAFNLISVSKLVSTTSYQITF 392

Query: 196  SQHKCWLQDPRDGKVQAVGRVFAGLYILKLSEF------CGSVHNNKGVDDLQVWHRRLG 357
            + + C++QD R         V  GLY L    F         +H    V  + +WH RLG
Sbjct: 393  TNNVCFIQDIRTKMKIGSVDVRGGLYQLIPHHFKPPFIHSTIIHPKCDVIPIDLWHFRLG 452

Query: 358  HTSLSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPY 537
            H S + L ++  L P    N    CN CH AKQ +LSF  S     + F L+H+DIWGPY
Sbjct: 453  HLSNTRLHNMQQLYPCLTINKDFTCNICHYAKQRKLSFSSSHSTASRPFSLLHMDIWGPY 512

Query: 538  -LEPSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDN 714
                S+    +  TIVDD T  TWI+LM +KSE  +HIS FI L++NQF   ++ +++DN
Sbjct: 513  SCISSIHGHKFFFTIVDDNTHFTWIFLMINKSETRMHISNFINLIENQFNTRIQTIQTDN 572

Query: 715  GAEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWP 894
            GAEFL    QN F  +GI+HQ +C  TPQQNGVVERKH+H+L +  AL+F SKLP  FW 
Sbjct: 573  GAEFLM---QNFFNSKGIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWS 629

Query: 895  YTLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRA 1074
            Y LL A +++N + + LL  K+PF+ LY +       +VFGCLC+ S     R K +PRA
Sbjct: 630  YALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRA 689

Query: 1075 SACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAIEF- 1251
              C+FLG+    KGY  Y+L T+ + ISR+V F+E++FP     SS + IP+ +  I F 
Sbjct: 690  HPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPV-VSPISFG 748

Query: 1252 -EEDAGEEVTHVSQKQQTDVQSPITDSEITDRLG-------------------RGHRVRH 1371
                + + ++ +    Q +V SP   +   D +                    R  R+R+
Sbjct: 749  IHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRN 808

Query: 1372 APSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSAS 1551
             PS+LQDY      H S T     L     Y ++ +  +YS  +S+ +  F+S IS + S
Sbjct: 809  PPSYLQDY------HHSLTSTSTNLHPGMLYPIEKY-ISYS-RLSNDFQAFVSSIS-AVS 859

Query: 1552 EPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTID 1731
            EP SY EAAK   W +AM+ EL AL+ N+TW LT LP  K+A+G +W+YKIK N+DG+I+
Sbjct: 860  EPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIE 919

Query: 1732 RYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYL 1911
            RYKARLVAKGY Q+EG+D++ +FSPVAKL TVR+L+ALA    W L  +D+NNAFLHG L
Sbjct: 920  RYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDL 979

Query: 1912 DEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLF 2091
            +EEVYM  P G       +VC L++SLYGLKQASRQW  + S  L+  G+ QS  D+ LF
Sbjct: 980  NEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLF 1039

Query: 2092 VKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQ 2271
            +K       AL+IYVDD+++ G++ + IQ +   L   F IKDLG+ KYFLGLE+ R+  
Sbjct: 1040 MKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKS 1099

Query: 2272 GTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLN 2451
            G HL QRKY++D+L D G+M  +PVSTP      ++A + TP AD   +RRL+GRL+YL 
Sbjct: 1100 GIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLT 1159

Query: 2452 LSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDAD 2631
             +RPDISY V  LSQF+ AP+ AH      +L+YLK     GLF+P        A+ D+D
Sbjct: 1160 TTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSD 1219

Query: 2632 WGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGL 2811
            W  CL TR+SITG+ V+ G+SL               +EAEYR++A T  EL+WL  L  
Sbjct: 1220 WAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLH 1279

Query: 2812 DLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFL 2991
            DL +    P  L+CDN++ALHI AN VFHERTKH+DIDCH+VR + ++G +    +++  
Sbjct: 1280 DLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPH 1339

Query: 2992 QPADLFTKALGGTAFRTFLLKLGM 3063
            Q AD+FTK+L  + F     KLGM
Sbjct: 1340 QLADIFTKSLSPSMFTALYSKLGM 1363


>gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium pratense]
          Length = 1433

 Score =  834 bits (2155), Expect = 0.0
 Identities = 440/1048 (41%), Positives = 618/1048 (58%), Gaps = 33/1048 (3%)
 Frame = +1

Query: 16   LSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMF 195
            +  P  V +P G  + V   G + LS ++TL +VL+VP F  NL+S+ QL     L C  
Sbjct: 389  IEKPFYVTVPTGNTVLVEMMGTIDLSKDITLQNVLLVPKFDCNLISICQLT--RDLNCFV 446

Query: 196  SQHK--CWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKGVDDLQVWHRRLGHTSL 369
            + H   C +QD    K   +G V  G+Y+LK  +  GS       D+  +WH R+GH S 
Sbjct: 447  TYHPSYCMIQDFATKKKIGLGDVHGGVYVLK-QQVQGSAFAAYHEDNTALWHARMGHPSP 505

Query: 370  SCLQHIPFLRPF-YNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEP 546
              +Q I  L  F +  N L  C+ CH +KQCRL F +S    E  F+LIH D+WG Y   
Sbjct: 506  QVMQRISQLVNFNFCSNKLRCCDICHRSKQCRLPFHISYNKAENPFDLIHCDLWGKYRTS 565

Query: 547  SVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEF 726
            S +   Y LTIVDD++RGTW+YL+K K+E+   ++ FI +V  QF   +KR+RSDNG EF
Sbjct: 566  SHSGCHYFLTIVDDYSRGTWVYLLKEKTEVLRILTNFINMVNTQFNVKIKRLRSDNGTEF 625

Query: 727  LSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLL 906
             ++  Q +    GILH+ SC  TPQQN  VERKHRHIL +ARAL FQ+ LP  FW   +L
Sbjct: 626  TNHAFQGILQREGILHETSCVGTPQQNARVERKHRHILNVARALRFQANLPISFWGECVL 685

Query: 907  AAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACI 1086
             A +++N  PS +    +P+E L  +P  Y+  K FGCLC+      Q+ KF+ RA  C+
Sbjct: 686  TATYLINRTPSMINDGLTPYEKLLGKPSSYEHIKTFGCLCYVKNSNKQQDKFDSRAEKCV 745

Query: 1087 FLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPF------HNGNSSAAEIPLPI---- 1236
            F+GY  G KG+ +YNL T+E+++SRDVVF+E  FP+       NG + ++   L      
Sbjct: 746  FVGYPKGQKGWTVYNLKTQEIYVSRDVVFYEDIFPYASQEKDSNGENHSSTFSLDFCSVG 805

Query: 1237 ------------QAIEFEEDAGEEVTHVSQKQQTDVQSPIT--DSEITDRLGRGHRVRHA 1374
                        Q I   E   E+V   +    T+V+ P    +SE    +  G R R  
Sbjct: 806  EEIVPSNDGQQDQIIISNEQREEQVVETNSDVITEVEEPQNKGESETMINIDMGPRNRRP 865

Query: 1375 PSWLQDY------VTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHI 1536
            P  L DY      +T+T     T+   G +   + Y       NY    S  Y  +L+ +
Sbjct: 866  PKRLDDYYCYSAEITHTCTSPKTSTSSGIIYPISNY------VNYD-EFSQKYQAYLAAV 918

Query: 1537 SNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNS 1716
              S  EP S+ +A     WREAM++EL ALEEN+TW+++ LP GKKA+G +WVYK+K  S
Sbjct: 919  E-SIEEPQSFKQAIHKQEWREAMSQELKALEENKTWEMSRLPKGKKAVGCRWVYKVKYKS 977

Query: 1717 DGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAF 1896
             G +++YKARLVAKGY Q+EG DF E+F+P AK+ TVR L+ +A  + W+LH +D++NAF
Sbjct: 978  TGEVEKYKARLVAKGYTQVEGDDFNETFAPDAKMTTVRCLLTVAVAKGWELHQMDVSNAF 1037

Query: 1897 LHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTH 2076
            LHG LDEEVYM  P GY    K  VC LR+SLYGL+QASR W  + S+ L+ +GF +   
Sbjct: 1038 LHGELDEEVYMEVPPGYRVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFHECEA 1097

Query: 2077 DNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLEL 2256
            D+ LF       ++A++IYVDD+++TG+ A   +  K YL++ F +KDLG  KYFLGLEL
Sbjct: 1098 DHSLFTYSHGSIFIAVLIYVDDLVVTGNDAKSCEKFKQYLNKCFHMKDLGELKYFLGLEL 1157

Query: 2257 MRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGR 2436
             R + G  +CQRKY +D+L + G++ CKP S P    + +   +S  + +  ++RRLVGR
Sbjct: 1158 ARGSSGLFICQRKYALDILNECGMLACKPSSIPLEPNHKLALDSSPLYENPSQYRRLVGR 1217

Query: 2437 LLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNA 2616
            L+YL ++RP+++Y V  LSQF+  P + HWD A+H+L+YLK +   G+  P  +  +  A
Sbjct: 1218 LIYLTITRPELTYSVHILSQFMQEPHQGHWDAAMHVLRYLKSSPGQGIIIPRDNDLRLVA 1277

Query: 2617 YCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWL 2796
            YCD+D+ +C LTR+SI+GY +  G +                +EAEYR+MA    E+ WL
Sbjct: 1278 YCDSDYASCPLTRRSISGYVMKLGTAPISWKTKKQTTVSRSSSEAEYRAMAHATSEVIWL 1337

Query: 2797 YNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQH 2976
              L   LQ+    P  LHCDN+AA+H+ +NPVFHERTKH+++DCH +R     G IS  H
Sbjct: 1338 RRLLTHLQVRCDSPTVLHCDNRAAIHLASNPVFHERTKHIEVDCHFIREFLVKGIISTVH 1397

Query: 2977 ISTFLQPADLFTKALGGTAFRTFLLKLG 3060
            I T  Q AD+FTK+LG   FR    KLG
Sbjct: 1398 IPTKSQQADIFTKSLGTKQFRELSDKLG 1425


>gb|PNX95813.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1351

 Score =  826 bits (2133), Expect = 0.0
 Identities = 455/1043 (43%), Positives = 624/1043 (59%), Gaps = 33/1043 (3%)
 Frame = +1

Query: 34   VHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQHKCW 213
            V LP+G +IS T  G++K++ ++TL DVL +P+F YNL+S+S++        +F+ + C 
Sbjct: 321  VKLPNGNYISTTMVGDIKVTAQITLHDVLFIPNFHYNLISISKIAQDLDCNFVFTDNVCL 380

Query: 214  LQDPRDGKVQAVGRVFAGLYILK------LSEFCGSVHNNKGVDDLQVWHRRLGHTSLSC 375
            +Q     K+   G++  GLY L+       SE  G   N+  +    +WH R GHTS   
Sbjct: 381  IQTKLQ-KMIGSGKLIDGLYYLEGTCFTQSSEKFGKSCNSVAIPKSALWHFRFGHTSQHR 439

Query: 376  LQHIPFLRPFYNKNVLDIC-NTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSV 552
            L+ +  + P    N  D C + CH AKQ +L + LS        EL+H+DIWGP+  P+ 
Sbjct: 440  LEQMQQMYPTITINKDDFCCDVCHLAKQKKLPYTLSNSRATHCLELLHMDIWGPFSTPTP 499

Query: 553  TNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLS 732
                Y LTIVDDF+R TWI L+K K E    I  FI LV+NQF   VK +RSDNG EFLS
Sbjct: 500  HGHRYFLTIVDDFSRFTWIVLLKGKFETASKIKDFINLVENQFGSKVKILRSDNGPEFLS 559

Query: 733  NQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAA 912
              T   +A +GILHQ SC  TPQQNG VERKH+ IL IARAL+ QS LP  +W Y +  A
Sbjct: 560  LTT--FYASKGILHQTSCVATPQQNGRVERKHQCILNIARALLLQSHLPPAYWGYAVFHA 617

Query: 913  VHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFL 1092
            V I+N +PS+ ++ + PF++LY + P+  +  VFG LC+ S     + KF+ RA  C+FL
Sbjct: 618  VFIMNRVPSSAIKGRIPFDVLYGKLPELSQLIVFGSLCYVSSEDTHKSKFDNRARKCVFL 677

Query: 1093 GYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPF-----------HNGNSSAAEIPLPIQ 1239
            GY  G+KGY   +L    +  SR V+F E+  P+           H+ ++S++  PL   
Sbjct: 678  GYRPGMKGYVALDLHNHAIITSRHVIFEETVLPYPVNTTTPSWELHSPSNSSS--PLSTS 735

Query: 1240 AIEFEED-------AGEEVTHVSQKQQTDVQSPITDSEITDR--------LGRGHRVRHA 1374
             IE   D       + +++   S +   D    I+D +I D         L +  R++  
Sbjct: 736  PIELTNDHETTNQTSNDQIPSPSTEPFIDNTPVISDHDIVDSPITPSSPPLRKSTRLKKP 795

Query: 1375 PSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASE 1554
            PS L DY  N V H             T Y +  F  ++S H+S TY+ +   +     E
Sbjct: 796  PSRLMDYNCNAVTH------------KTPYPITNF-ISHS-HLSPTYSSYCLSLLTD-QE 840

Query: 1555 PTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDR 1734
            P SY EA++   W +AM  EL AL  N TW++  LPAG K IGSKWVYKIKR +DG+IDR
Sbjct: 841  PNSYAEASQSEWWVKAMQSELNALANNHTWKIVDLPAGVKPIGSKWVYKIKRKADGSIDR 900

Query: 1735 YKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLD 1914
            YKARLVAKGY QIEG+D+ E+FSPVAK+ T+R ++A+A+ ++W +H +D++NAFLHG LD
Sbjct: 901  YKARLVAKGYNQIEGIDYFETFSPVAKMTTIRTVLAIASIQRWHVHQLDVDNAFLHGDLD 960

Query: 1915 EEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFV 2094
            E+VYM  P+G    +  + C L +SLYGLKQASRQW  + S  L   G+ Q   D  LF 
Sbjct: 961  EDVYMKIPQGLEGIQPNKTCKLIKSLYGLKQASRQWYAKLSHFLTTIGYTQMPSDPTLFT 1020

Query: 2095 KHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQG 2274
            K +   + +L++YVDD+++ G+  A IQ  K+ LHE F IKD+G  K+FLGLE+  S QG
Sbjct: 1021 KSNQSEFTSLLVYVDDIVLAGNCLAEIQVTKSKLHEAFGIKDIGVLKFFLGLEVAHSEQG 1080

Query: 2275 THLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNL 2454
              LCQRKY +DLL +TG +GCKP S P    +      STP  +I ++R LVG+LLYL  
Sbjct: 1081 ITLCQRKYCLDLLNETGNLGCKPSSIPMDPSHRPHHDDSTPHENITEYRALVGKLLYLTS 1140

Query: 2455 SRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADW 2634
            +RPDI++ VQQLSQF+ APT  H+  A  +L+YLKG    GLF+P     Q + + DADW
Sbjct: 1141 TRPDIAFPVQQLSQFLDAPTSLHFKAAHKVLRYLKGNPGTGLFFPRNSSLQLSGFSDADW 1200

Query: 2635 GTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLD 2814
            G C  +R+SITGYC F G SL               +EAEYR++A+T CEL+WL  L  D
Sbjct: 1201 GGCPDSRRSITGYCFFIGQSLVCWKSKKQLTVSKSSSEAEYRALASTTCELQWLTYLLRD 1260

Query: 2815 LQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQ 2994
            LQ+       L+CD+++ALHI +NPVFHERTKH+DIDCHIVR + + G +    I+ + Q
Sbjct: 1261 LQIHTDKLSTLYCDSQSALHIASNPVFHERTKHIDIDCHIVREKLQGGLMKLLPITGYNQ 1320

Query: 2995 PADLFTKALGGTAFRTFLLKLGM 3063
             AD+FTKAL    F     KLG+
Sbjct: 1321 IADIFTKALHPANFHRLFAKLGL 1343


>gb|PNY12308.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1449

 Score =  823 bits (2126), Expect = 0.0
 Identities = 446/1050 (42%), Positives = 620/1050 (59%), Gaps = 32/1050 (3%)
 Frame = +1

Query: 34   VHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQHKCW 213
            V LPDG  +  T  G   L   + + +VL VP    +L+SVSQL+        F+   C 
Sbjct: 411  VGLPDGQKVCATKEGTTILEGGLKISNVLYVPKLNCSLISVSQLIDETHCMIQFTNSLCV 470

Query: 214  LQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKGVDDLQVWHRRLGHTSLSCLQHIPF 393
            +QD     +  +G    GLY  +      ++  + G+  L +WHRR+GH SL   + +  
Sbjct: 471  MQDRTSRMLIGLGERIDGLYYFRGIRQAKALKVDAGIS-LDLWHRRMGHPSLRITKLVSN 529

Query: 394  LRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYML 573
                 N      C+ C  AKQ R SFPLS      AF+L+H D+WGPY  PS     Y L
Sbjct: 530  TSSRSNNYGNKACDVCQRAKQTRDSFPLSNHKVCNAFDLVHCDLWGPYKTPSSCGAYYFL 589

Query: 574  TIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLF 753
            TIVDD++R  WI+L+  K E    +  FIAL++ Q+++ VK +RSDNG EF   ++Q  F
Sbjct: 590  TIVDDYSRAVWIFLLLDKKEAPRALLNFIALIKRQYEKEVKMIRSDNGTEFTCLRSQ--F 647

Query: 754  AERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSL 933
            +E GI+ Q SC  TPQQNG VERKHRHIL +ARAL FQ  LP  FW   +L A +++N  
Sbjct: 648  SELGIMFQTSCTGTPQQNGRVERKHRHILNVARALKFQGNLPISFWGECILTAGYLINRT 707

Query: 934  PSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIK 1113
            P+ LL  KSP+E+L  +PP Y+  KVFG LC+A   G    KF  R+  C+F+GY  G K
Sbjct: 708  PTPLLNGKSPYEMLNGKPPSYEHLKVFGSLCYAHNQGRNGDKFASRSRKCVFVGYPHGKK 767

Query: 1114 GYRLYNLDTKEVFISRDVVFHESNFPF-HNGNSSAAEIPLPI---------QAIEFEEDA 1263
            G++L++LDT   F+SRDV F E  FPF H+  +S +E    +         + +E EE  
Sbjct: 768  GWKLFDLDTNTYFVSRDVDFFEDEFPFGHSTVTSGSEAMSHMLDEEAISDTEIVESEEIT 827

Query: 1264 GEEV-----------------THVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQD 1392
             +E+                 TH S+   T+ Q    +SE  ++ GRG R +     L+D
Sbjct: 828  NDELQKGETHGDVRGGQHVENTHQSEDVVTNRQPENEESE--EQFGRGKRAKFPSVRLRD 885

Query: 1393 YVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPH-----MSSTYAVFLSHISNSASEP 1557
             VTNTV    TT+ +   + PT+       +  S +      S  +  FL+ ++ +  EP
Sbjct: 886  CVTNTVQ---TTMSLS-TRSPTSQHQSKVRYPISHYTNCDKFSLQHQQFLAAVT-ADREP 940

Query: 1558 TSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRY 1737
             ++ EA KD  W  AM +E+ ALE+N TW +  LP  KKA+G KWVYKIK +SDGTI+R+
Sbjct: 941  MTFAEAVKDNRWNLAMQQEIQALEDNNTWTVCPLPVNKKALGCKWVYKIKYHSDGTIERF 1000

Query: 1738 KARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDE 1917
            KARLV  G  Q+EG+D+ E+F+PVAK+VTVR+++A+A  ++W+LH +D++NAFLHG L E
Sbjct: 1001 KARLVILGNHQVEGIDYTETFAPVAKMVTVRIVLAVAAAKRWELHQMDVHNAFLHGDLKE 1060

Query: 1918 EVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVK 2097
            EV+M PP G+  ++ G VC LR+SLYGLKQA R W  + S  L  +GF +S  D  LF  
Sbjct: 1061 EVFMKPPPGFQPSQPGMVCKLRKSLYGLKQAPRCWFAKLSSALKDYGFTRSYSDYSLFTL 1120

Query: 2098 HDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGT 2277
             D    L +++YVDD++I G+    IQ  K YL   F +KDLG  KYFLG+E+ RS  G 
Sbjct: 1121 QDKDVQLVVLVYVDDLIICGNDHDSIQRFKNYLSRCFHMKDLGKLKYFLGVEVARSPAGV 1180

Query: 2278 HLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLS 2457
             LCQRKY +D++ + GL+G KP STP  Q +++        A+  ++RRLVGRL+YL  +
Sbjct: 1181 FLCQRKYALDIISEVGLLGAKPASTPLEQNHHLGLAKGAFVANPDRYRRLVGRLIYLCFT 1240

Query: 2458 RPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWG 2637
            RP++SY V  LSQF+  P   HWD A+ +++YLKG    G+        Q   +CD+DW 
Sbjct: 1241 RPELSYCVHVLSQFMQQPRTEHWDAALRVVRYLKGNPGQGVLLDSNSDLQLYGWCDSDWA 1300

Query: 2638 TCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDL 2817
            +C LTR+S+TG+ +F G+S                AEAEYRSMA+T CELKW+  +   L
Sbjct: 1301 SCPLTRRSLTGWIIFLGHSPVSWKTKKQHTVARSSAEAEYRSMASTTCELKWIKGVLSSL 1360

Query: 2818 QLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQP 2997
             +  S+PI L+CD++AALHI  NPVFHERTKH+D+DCH +R++     + P ++ T  Q 
Sbjct: 1361 GIIHSMPIQLYCDSQAALHIAKNPVFHERTKHIDVDCHFIRDEIVRQNLQPSYVPTHTQL 1420

Query: 2998 ADLFTKALGGTAFRTFLLKLGMCSSTHIPT 3087
            AD FTKALG T F T L KLG+  + H PT
Sbjct: 1421 ADTFTKALGSTQFYTLLDKLGIW-NPHAPT 1449


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  808 bits (2087), Expect = 0.0
 Identities = 437/1017 (42%), Positives = 610/1017 (59%), Gaps = 31/1017 (3%)
 Frame = +1

Query: 106  LLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH--KCWLQDPRDGKVQAVGRVFAGLYIL 279
            L DVL VPSF  NL+SVSQL+  N+ +C    H   C +      K+    +   GLY++
Sbjct: 3    LHDVLFVPSFCVNLISVSQLI--NSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60

Query: 280  --------KLSE-FCGSVHNNKGVDDLQVWHRRLGHTSLSCLQHIPFLRPFYNKNVLDI- 429
                    +L++ F G+  +    D + +WH RLGH S S  + I    P  +    D+ 
Sbjct: 61   IRDSATRSQLTQPFVGNTISKDSSDSV-LWHHRLGHLSNSTHRIIASQFPIVSYQHHDVP 119

Query: 430  CNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWI 609
            C+ CH AKQ RL   +S   +    EL+H DIWGPY  PSV    Y LT+VDDF+R TWI
Sbjct: 120  CDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSRFTWI 179

Query: 610  YLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCP 789
             +MK KSE   H++ FI+ ++ QFQ  +K +R+DNG+EFL +   +LF  +GI+HQ SC 
Sbjct: 180  VMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMH---DLFLSKGIIHQGSCV 236

Query: 790  YTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFE 969
             TPQQNGVVERKH+HIL  ARAL FQ+ LPK FW + +  AVH++N +PS LL  K+P++
Sbjct: 237  ETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNKTPYQ 296

Query: 970  LLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEV 1149
             L++ PP     + FGCL +AS L   R KF+PRA   + LGY  G+KGY LY+L + E 
Sbjct: 297  ALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHEF 356

Query: 1150 FISRDVVFHESNFPFHNGNSSAAEIPLPI---------QAIEFEEDAGEEVTHVSQKQQT 1302
            F+SR+V FHE  FPFH  + ++   P P             + +       T  +     
Sbjct: 357  FMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPSPTSSTSIPPE 416

Query: 1303 DVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKP------TTY 1464
                P++ +    R     R+R  PS+L+DY  + +          G+  P       TY
Sbjct: 417  QPHQPLSPAPAPSR--HSTRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPHSISSTLTY 474

Query: 1465 DLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETW 1644
            D  C P         +Y  F   +S +  EP +Y +A+K   W  AM  ELAAL+ N+TW
Sbjct: 475  DF-CSP---------SYKQFCLSVSTNF-EPHTYTQASKYDCWIMAMKTELAALDMNQTW 523

Query: 1645 QLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVT 1824
             +  LP+GK+ IG KWVYKIK  SDG+I+RYKARLVAKGY Q EG+D+++++SPVAKL T
Sbjct: 524  SIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTT 583

Query: 1825 VRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKG----EVCLLRRSL 1992
            VR+L+AL   + W L  +D+NNAFLHG L EEVYM  P G           +VC L +S+
Sbjct: 584  VRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSI 643

Query: 1993 YGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAAL 2172
            YGLKQASRQW  + S  L+  G+  ST D+ LF+K     + AL++YVDD+++ G+    
Sbjct: 644  YGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPE 703

Query: 2173 IQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVST 2352
            I  +K  LH+ F IKDLG+ +YFLGLE+ RSN+G  L QRKY +++L+D G +  KP ST
Sbjct: 704  IDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSST 763

Query: 2353 PFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDV 2532
            PF     + +   +P+ D   +RRL+GRLLYL  +RPDISY VQQLSQFV  P + H+  
Sbjct: 764  PFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQA 823

Query: 2533 AIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXX 2712
            A  +L+YLKG+   GLFY      + +A+ D+DW +C ++RKSITG+CVF G+SL     
Sbjct: 824  ATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRS 883

Query: 2713 XXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPV 2892
                      +EAEYR++A+  CEL+WL+ L  DL+ S + P  + CDNK+A+++  NP 
Sbjct: 884  KKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPT 943

Query: 2893 FHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 3063
            FHERTKH++IDCH++R + ++  +    + +  Q AD FTK L  T+F +F+ KLG+
Sbjct: 944  FHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGL 1000


>gb|PNY12226.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1464

 Score =  823 bits (2126), Expect = 0.0
 Identities = 451/1054 (42%), Positives = 628/1054 (59%), Gaps = 41/1054 (3%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH 204
            P+ V LP+G+ ++    G++ +++ + L +VL +P F YNL+SVS++         F+ +
Sbjct: 414  PIPVRLPNGSTVTTDIIGDIHITNTLVLTNVLYLPHFTYNLISVSKVTHQLACTFTFASN 473

Query: 205  KCWLQDPRDGKVQAVGRVFAGLYILK------LSEFCGSVHNNKGVDDLQVWHRRLGHTS 366
             C + + +  K+   G+   GLY L+       S   G+V     +    +WH R GH S
Sbjct: 474  VCTIHNSQQ-KMIGSGKKLNGLYYLEGTNASVHSLSSGTVCTFFSIPQSALWHFRFGHAS 532

Query: 367  LSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEP 546
             + L+ +  L P  + N   +C+ CH AKQ +LS+ LST  T + F+L+H+DIWGPY   
Sbjct: 533  NTRLEIMHKLYPSISINKDCVCDVCHLAKQKKLSYSLSTSQTTKCFDLLHMDIWGPYSTA 592

Query: 547  SVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEF 726
            ++    Y LTIVDDF+R TW+ L+K K+E+  H+  FI LV+NQF  +VK VRSDNG EF
Sbjct: 593  TLHGHKYFLTIVDDFSRFTWVILLKGKNEVASHVQHFIQLVENQFDSTVKIVRSDNGPEF 652

Query: 727  LSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLL 906
                  + +A +GI+HQ SC YTPQQNG VERKH+ IL IARAL+ QS LP K+W Y +L
Sbjct: 653  ---SIPSFYASKGIVHQTSCVYTPQQNGRVERKHQSILAIARALLIQSHLPAKYWGYAVL 709

Query: 907  AAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACI 1086
             +V+++N +PS +++   P+  L+KE P     ++FGCLC+ S     R K + RA  C+
Sbjct: 710  HSVYLMNRMPSVVIEGDLPYHKLHKELPDISMLRIFGCLCYVSTNDAHRLKLDHRARKCV 769

Query: 1087 FLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAE--------IPLPI-- 1236
            FLGY +G KG+   +L + EV +SR+V F E  FP+ +   S            P+P   
Sbjct: 770  FLGYKSGTKGFVALDLHSSEVVVSRNVQFEELIFPYTSQPKSQTNWEFFVPPIDPIPYTT 829

Query: 1237 ----------QAIEFEEDAGEEVTHVSQK------QQTDVQSPITDSEITDR-------- 1344
                       AIE +E      + V Q       QQT+    I  +E +          
Sbjct: 830  VNPTNNDATPTAIEPDEPIPSTESPVPQTEPSQSIQQTEPSQSIQQNEPSQSIQPPNPPP 889

Query: 1345 LGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCF-PFNYSPHMSSTYAV 1521
            L +  R+   PS L DYV + + H             T Y +  +   N+      TY +
Sbjct: 890  LRKSTRITKPPSHLADYVCHGIAHS------------TKYPISNYTSHNHISSQQLTYTL 937

Query: 1522 FLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYK 1701
             L     + +EPTSY EA K   W +AM  EL ALE+N+TW + SLP G K IGSKWVYK
Sbjct: 938  SLM----TETEPTSYFEACKHEHWVKAMQSELQALEQNKTWTIVSLPTGVKPIGSKWVYK 993

Query: 1702 IKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHID 1881
            IKR SDG+I+RYKARLVAKGY Q+EG+D+ E+FSPVAK+ T+R+++A+A+ R W +H +D
Sbjct: 994  IKRKSDGSIERYKARLVAKGYNQVEGIDYFETFSPVAKMTTIRVVLAIASIRNWFVHQLD 1053

Query: 1882 INNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGF 2061
            +NNAFLHG L E+VYM  P+G       +VC L +SLYGLKQASR+W  + S+ L+   F
Sbjct: 1054 VNNAFLHGELCEDVYMQIPQGLEGFATDKVCKLTKSLYGLKQASRKWYEKLSQFLISHHF 1113

Query: 2062 VQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYF 2241
            +Q   D  LFVK     + AL++YVDD+++TGDS A I N+K  LH  F IKDLG  K+F
Sbjct: 1114 IQVPSDPTLFVKKTSDSFTALLVYVDDIVLTGDSMAEITNIKNELHHTFGIKDLGILKFF 1173

Query: 2242 LGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFR 2421
            LGLE+  S +G  L QR+Y +DLL +TG +GCKP S P      +    S P+ DI  +R
Sbjct: 1174 LGLEVAHSTKGITLSQRQYCLDLLAETGDLGCKPSSIPMDPSLKLHHDDSAPYTDITGYR 1233

Query: 2422 RLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDC 2601
             LVG+LLYL  +RPDI++ VQQL QF+  PT+ H+  A  +L+YLKG    GL++P    
Sbjct: 1234 TLVGKLLYLTNTRPDIAFPVQQLCQFLDCPTQLHYKAAHKVLRYLKGCPGSGLYFPRSSD 1293

Query: 2602 PQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVC 2781
             Q   + DADWG C+ TR+SITGYC F G+SL               +EAEYR++A+  C
Sbjct: 1294 TQLVGFTDADWGGCVDTRRSITGYCFFLGSSLICWKSKKQQTISRSSSEAEYRALASGTC 1353

Query: 2782 ELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGF 2961
            EL+WL  L  DLQ++      L+CD+++A+HI +NPVFHERTKHLDIDCH+VR + +AG 
Sbjct: 1354 ELQWLTYLLRDLQVTLIQQPSLYCDSQSAIHIASNPVFHERTKHLDIDCHVVRERLQAGL 1413

Query: 2962 ISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 3063
            +    +S F Q AD+ TKAL    F   L KLG+
Sbjct: 1414 MKLLPVSGFQQLADIMTKALHPANFHRLLTKLGL 1447


>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  818 bits (2113), Expect = 0.0
 Identities = 438/1031 (42%), Positives = 610/1031 (59%), Gaps = 19/1031 (1%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH 204
            PV V LP+G  +  TH+G V LS  +TL +VL +P+F +NL+S+S+L++      +FS  
Sbjct: 293  PVPVKLPNGHQVHATHSGIVHLSKSITLFNVLYMPAFTFNLISISKLVSSTHCALIFSST 352

Query: 205  KCWLQDPRDGKVQAVGRVFAGLYILKLSE----FCGSV-HNNKGVDDLQVWHRRLGHTSL 369
             C LQD        +     GLY L   +     C ++ H    +  + +WH R+GH S 
Sbjct: 353  SCMLQDASTRTKIGIVEEKHGLYHLIPDQVNKVICSTIIHPKCKIIPIDLWHFRMGHLST 412

Query: 370  SCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPS 549
              LQ +    P    +   +CNTCH AK  +L F  ST H    F L+H+DIWGP  +PS
Sbjct: 413  ERLQCMKPHYPILRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPS 472

Query: 550  VTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFL 729
            +    Y LTIVDD +R TW++LM  K+E    I  FIA V+ Q+ + +K++RSDNG EFL
Sbjct: 473  MHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFL 532

Query: 730  SNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTLLA 909
                 + +A +GI+HQ +C  TP+QNG+ ERKH+H+L + RAL+FQ+ LP  FW Y LL 
Sbjct: 533  M---PSFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLH 589

Query: 910  AVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASACIF 1089
            A +++N +P+  L   SP+E L+   P+    +VFGCLC+AS L   R K +PRA  CIF
Sbjct: 590  ATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKLDPRAHPCIF 649

Query: 1090 LGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAIEFE----- 1254
            +G+    KGY +YNL    +  SR+VVF+E +F       S+      I    F      
Sbjct: 650  IGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILPKSFNISPHD 709

Query: 1255 -------EDAGEEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVH 1413
                   +   +E T  +  Q T                R  R +HAP++LQDY      
Sbjct: 710  PIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKHAPTYLQDY------ 763

Query: 1414 HGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASW 1593
            H S +     +   + Y L     +YS  +S T+  F+  IS++  EP+SY EA++   W
Sbjct: 764  HHSLSSHDTKVSTSSRYPLSSV-LSYS-RLSHTHKHFVMSISSTV-EPSSYAEASQYDCW 820

Query: 1594 REAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQI 1773
             +AM  EL AL+ N TW+LT LP  K AIG +WVYKIK  +DG+I+RYKARLVAKGY Q+
Sbjct: 821  IKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQM 880

Query: 1774 EGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHK 1953
            EG+D++ +FSPVAKL  VR+L+A+    QW L  +D+NNAFLHG LDEEVYM  P G   
Sbjct: 881  EGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHGELDEEVYMQVPPGLSV 940

Query: 1954 AKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIY 2133
                 VC L+RSLY LKQASRQW  + S  L+  GF +S  D+ LF++       AL++Y
Sbjct: 941  PNSQMVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALLVY 1000

Query: 2134 VDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLL 2313
            VDD+++TG+S + IQ++   L + F IKDLG+ KYFLG+E+ RS+ G HLCQRKY +D+L
Sbjct: 1001 VDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLDIL 1060

Query: 2314 KDTGLMGCKPVSTPFPQGYNITAQASTPFAD--IGKFRRLVGRLLYLNLSRPDISYGVQQ 2487
             D+G++GC+P  TP      + A A TP +      +RRL+GRL+YL  +RPDI+Y VQQ
Sbjct: 1061 SDSGMLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRLIYLTNTRPDITYAVQQ 1120

Query: 2488 LSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSIT 2667
            LSQ++  PT  H   A  +L+YLKGT   G+F      PQ  A+ D+DW  C  +RKS T
Sbjct: 1121 LSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKSTT 1180

Query: 2668 GYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPL 2847
            G+ ++ G+S                +EAEYR+MA T CEL+WL  L  D + + + P  +
Sbjct: 1181 GFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLTYLLQDFRHNFTKPATI 1240

Query: 2848 HCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGG 3027
            +CDN++A+ I  NPVFHERTKH++IDCHIVR +  +G +    + + LQ AD+FTKAL  
Sbjct: 1241 YCDNQSAIQIATNPVFHERTKHIEIDCHIVRQKVTSGLLKLLPVPSSLQLADIFTKALPP 1300

Query: 3028 TAFRTFLLKLG 3060
            T F+    KLG
Sbjct: 1301 TVFQNLCNKLG 1311


>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1427

 Score =  820 bits (2118), Expect = 0.0
 Identities = 451/1058 (42%), Positives = 628/1058 (59%), Gaps = 34/1058 (3%)
 Frame = +1

Query: 25   PVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECMFSQH 204
            PV V LP+G   +   +G +  S++  L DVL +P+F  N++SV ++ A    E MF+++
Sbjct: 375  PVHVKLPNGNTSTAQFSGTIIFSEKFFLNDVLYIPNFHLNIISVQKIAASLDYELMFNKN 434

Query: 205  KCWLQDPRDGKVQAVGRVFAGLYILKLSEFCGSVHNNKG-----------VDDLQVWHRR 351
             C +QD    K   +  V   LYIL+      S+   K                 +WH R
Sbjct: 435  SCIIQDLTSKKTIGLAEVKNHLYILQRPSKDNSISACKSNSVLNAQPKGTTSSFDLWHYR 494

Query: 352  LGHTSLSCLQHIPFLRPF--YNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDI 525
            LGH S   LQ +  L P+  YNKN+   C+ CH  KQ RL FP ST  +   F+L+H+DI
Sbjct: 495  LGHPSHVVLQTVKRLFPYVTYNKNIT--CDYCHFGKQARLPFPTSTTKSLSCFDLVHMDI 552

Query: 526  WGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVR 705
            WGP   PS+    Y LTIVDD++R TWIY MK K E    I  FI+ VQ QF + +K +R
Sbjct: 553  WGPLAIPSIHGHKYFLTIVDDYSRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLR 612

Query: 706  SDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKK 885
            SDNG EF  +Q   L+A  GI+HQ SC  TPQQN VVERKHRHIL I R L+F S +PK 
Sbjct: 613  SDNGVEFAMDQ---LYATYGIVHQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKS 669

Query: 886  FWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFE 1065
            FW Y +  A+H++N LPS +L   SP+++LY +PP     KVFG LC+AS L   R K  
Sbjct: 670  FWCYAVGHAIHLINRLPSPVLNNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLA 729

Query: 1066 PRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIPLPIQAI 1245
            P+A+  ++LG   G KG+ + +L T+ +F+SR+VVF+E  FPF    S+           
Sbjct: 730  PKATKGVYLGVKQGTKGFLVLDLLTRSIFVSRNVVFYEHIFPFFEKGSTVITNSQQQNDA 789

Query: 1246 EFE----EDAGEEVTHVSQKQQTDVQSPITDSEITD--------------RLGRGHRVRH 1371
             F+    + +   VT +      D+ S   ++++ D              +L +  R + 
Sbjct: 790  CFDFLYLDSSSHPVTTIDNSSLLDIDSAHYENDLNDIDESAHPSETSSPSQLRKSTRHKC 849

Query: 1372 APSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYS---PHMSSTYAVFLSHISN 1542
            +P++L+DY  N +          G+  P    +  +P N       +S++Y+ ++  I+ 
Sbjct: 850  SPAYLKDYHCNLLI---------GVPPPEDKHIR-YPLNTVLSYDSLSASYSRYVLSITT 899

Query: 1543 SASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDG 1722
               EP ++ +A K+  W EAM  EL ALE N+TW +  LP GK  IGSKWVYKIK  SDG
Sbjct: 900  HV-EPHTFNQAVKNKVWVEAMQAELDALEHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDG 958

Query: 1723 TIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLH 1902
            +I+RYKARLV KGY QI+G+D+ ++F+PVAKL TVRML+A+A+ + W+LH +DINNAFLH
Sbjct: 959  SIERYKARLVVKGYTQIQGLDYFDTFAPVAKLSTVRMLLAIASCQHWELHQLDINNAFLH 1018

Query: 1903 GYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDN 2082
            G L E+VYM  P+G +  K   VC L +SLYGLKQASRQW  + S  LL   + QS HD+
Sbjct: 1019 GDLLEDVYMEIPQGLNIDKPNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLHYKQSQHDH 1078

Query: 2083 CLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMR 2262
             LF KH    +  ++IYVDD++I G  +  I ++K  L   F IKDLG  +YFLGLE+ R
Sbjct: 1079 SLFTKHHGTHFTVILIYVDDLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRYFLGLEIAR 1138

Query: 2263 SNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLL 2442
            S+ G  L QRKY +DLL +T  +  KPV TP  +G  ++    +P+ D   +RRL+G+LL
Sbjct: 1139 SHLGISLSQRKYTLDLLDETSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLL 1198

Query: 2443 YLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYC 2622
            YL  +RPDISY VQQLSQF+  P ++H+  AI +L+YLKG    GLFYP     Q  A+ 
Sbjct: 1199 YLITTRPDISYSVQQLSQFLSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADSPLQLKAFS 1258

Query: 2623 DADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYN 2802
            D+DW +C  TR+S++GY +F GNSL               +EAEYR++AAT CE++WL  
Sbjct: 1259 DSDWASCPDTRRSLSGYSIFLGNSLISWKCKKQSTISRSSSEAEYRALAATACEIQWLTY 1318

Query: 2803 LGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHIS 2982
            L  D  +  + P  L+CDN++A HI +N VFHERTKH++IDCH+VR + +AG      I+
Sbjct: 1319 LLQDFSVPFTTPALLYCDNQSARHIASNAVFHERTKHIEIDCHLVREKLQAGLFHLLPIA 1378

Query: 2983 TFLQPADLFTKALGGTAFRTFLLKLGMCSSTHIPT*RG 3096
            +  Q AD+ TK L  + F+  L KLG+  + + P  RG
Sbjct: 1379 SSHQLADILTKPLDPSPFQYLLSKLGVI-NIYSPACRG 1415


>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1352

 Score =  816 bits (2109), Expect = 0.0
 Identities = 437/1028 (42%), Positives = 613/1028 (59%), Gaps = 11/1028 (1%)
 Frame = +1

Query: 13   NLSTPVSVHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECM 192
            N   P++V LP G H+  THAG VK +D   L DVL +P F+YNL+S+S+L++   ++ +
Sbjct: 329  NSINPITVKLPTGQHVLATHAGVVKFTDTFYLTDVLFIPEFKYNLISISKLVSSLDVQLI 388

Query: 193  FSQHKCWLQDPRDGKVQAVGRVFAGLYILKLS----EFCGSVHNNK-GVDDLQVWHRRLG 357
            F    C +QD    +      V  GLY +  +        +++N +  + ++ +WH RLG
Sbjct: 389  FYSTHCLIQDVNTKEKIGTVDVEVGLYTMTTAVVQPSILSAIYNPEWSIQNIDLWHFRLG 448

Query: 358  HTSLSCLQHIPFLRPFYNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPY 537
            H     L  +    P    N    CNTCH AKQ +LSFPLS  H  Q+F L+HIDIWGP 
Sbjct: 449  HLPYDKLHSMKQYYPCLYSNKHFTCNTCHHAKQKKLSFPLSHSHALQSFALLHIDIWGPC 508

Query: 538  LEPSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNG 717
             + S+    Y LTIVDD TR TW++LM  K++    ++ FI+ ++NQF   VK +R+DNG
Sbjct: 509  SKTSIHGHRYFLTIVDDHTRYTWVFLMASKADTCNCVTNFISHIENQFATRVKVIRTDNG 568

Query: 718  AEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPY 897
            AEF  N   N F  +GI+HQ +C  TP+QN +VERKH+H+L + RAL+FQS LP  FW +
Sbjct: 569  AEFSMN---NYFDSKGIIHQTTCIETPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNF 625

Query: 898  TLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRAS 1077
             L+ A +I+N +P+  LQ  SPFE L  +P      +VFGCLC+ S L   R K +PRAS
Sbjct: 626  ALMHATYIINCIPTPFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRAS 685

Query: 1078 ACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGN----SSAAEIPLPIQAI 1245
             C+FLG+    KGY  +NL+T+ + +SR+VVF+E++FP+   +    SS   +P P  + 
Sbjct: 686  PCVFLGFQPHTKGYLTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSASSTPSLPTPFTSN 745

Query: 1246 EFEEDAGEEVTHVSQKQQTDVQSPI--TDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHG 1419
                D        S      + SP   T S I  R  R    RH PS+L+DY       G
Sbjct: 746  PMIHDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRS---RHPPSYLRDYHMTFTSTG 802

Query: 1420 STTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWRE 1599
             ++    G++    Y LD    +Y+  +S  +  F+  IS   +EP SY EA+K   W +
Sbjct: 803  PSSSP--GIR----YPLDSV-ISYN-RLSHPFRHFIMSIS-LLTEPKSYAEASKSDCWIK 853

Query: 1600 AMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEG 1779
            AM  E+ ALE N TW +TSLP  K AIG KW+YK+K ++DG+++R+KARLVAKGY Q+EG
Sbjct: 854  AMTDEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVAKGYTQLEG 913

Query: 1780 VDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAK 1959
            +DF+++F+PVAKL TV +L++LA    W L  +DINNAFLHG L+EEVYM  P G     
Sbjct: 914  LDFLDTFAPVAKLTTVHLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTT 973

Query: 1960 KGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVD 2139
             G+VC L RSLYGLKQASRQW    S  ++  GF  S+ D+ LF+K  +    AL++YVD
Sbjct: 974  PGQVCKLNRSLYGLKQASRQWYARLSTFIMQQGFHHSSADHSLFLKFTNSACTALLVYVD 1033

Query: 2140 DVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKD 2319
            D+++ G+    I  +   LH+ F IKDLG   YFLGLE+ R++   HLCQRKY +D+L D
Sbjct: 1034 DIVLAGNDLTEIHQITALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLCQRKYTLDILSD 1093

Query: 2320 TGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQF 2499
            TG++ C P ST       +++   TP  D   +R+L+GRL+YL  + PDI++ VQ LSQF
Sbjct: 1094 TGMLACCPSSTLMDYKAALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPDITHAVQHLSQF 1153

Query: 2500 VHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCV 2679
               PT  H   A  +L+YLK     G+F       Q  ++ D+DW  C+ TR+SITG+ V
Sbjct: 1154 ASKPTTYHQHAAFRILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAV 1213

Query: 2680 FFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDN 2859
            + G+SL               +EAEYR++A+T CE++WL  L  D +L    P  L+CDN
Sbjct: 1214 YLGHSLISWKSKKQATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDN 1273

Query: 2860 KAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFR 3039
            ++ L I  N VFHERTKH++IDCH+VR +   G +    +S+  Q AD++TKAL  + F 
Sbjct: 1274 QSVLQIACNQVFHERTKHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFN 1333

Query: 3040 TFLLKLGM 3063
                KLGM
Sbjct: 1334 ELNSKLGM 1341


>gb|PNX93622.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1454

 Score =  820 bits (2117), Expect = 0.0
 Identities = 451/1065 (42%), Positives = 628/1065 (58%), Gaps = 47/1065 (4%)
 Frame = +1

Query: 34   VHLPDGTHISVTHAGNVKLSDEVTLLDVLIVPSFRYNLLSVSQLLAGNTLECM--FSQHK 207
            + LPDG + S T  G V L + + L +VL VP+ + NL+S+SQL+  + L+C+  FS   
Sbjct: 411  IGLPDGKNASATKEGVVLLDEGLKLYNVLYVPNLKCNLISLSQLM--DDLDCIVHFSDKL 468

Query: 208  CWLQDPRDGKVQAVGRVFAGLYILKLSE---FCGSVHNNKGVDDLQVWHRRLGHTSLSCL 378
            C +QD     +   G+   GLY  +  +    C  V    GV+ L++WHRRLGH SL   
Sbjct: 469  CVMQDRTSRMLIGAGKRRDGLYYFRTIQRVQACSVV----GVNQLELWHRRLGHPSLKVT 524

Query: 379  QHIPFLRPF-----YNKNVLDICNTCHEAKQCRLSFPLSTIHTEQAFELIHIDIWGPYLE 543
            + +            NKN    C+ C  AKQ R  F LS      AFELIH D+WGPY  
Sbjct: 525  RLVSGTSKNNDHVELNKN----CDVCLRAKQTREKFSLSEHVANDAFELIHCDLWGPYRT 580

Query: 544  PSVTNTSYMLTIVDDFTRGTWIYLMKHKSEIHLHISKFIALVQNQFQRSVKRVRSDNGAE 723
             S     Y +TIVDD++R  WIYL+  K E+   +  F  L++ QF + VK  RSDNG E
Sbjct: 581  ASSCGAFYFVTIVDDYSRAVWIYLIGDKREVSQTLINFFTLIKRQFDKQVKIFRSDNGTE 640

Query: 724  FLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQSKLPKKFWPYTL 903
            F+    +  F E GI+ Q SC  TPQQNG VERKHRHIL +ARAL FQS LP  FW   +
Sbjct: 641  FVC--MKRYFHENGIIFQTSCVGTPQQNGRVERKHRHILNVARALRFQSNLPIDFWGECI 698

Query: 904  LAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGPQRGKFEPRASAC 1083
            LAA ++LN  PSA+L  K+P+E+L+ + P  +  +VFGCLC+A  L  +  KF  ++  C
Sbjct: 699  LAAGYLLNRTPSAILNGKTPYEMLHGQAPSLEHIRVFGCLCYAHNLNRKGDKFASKSRKC 758

Query: 1084 IFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAE-----IPLPIQAIE 1248
            IF+GY  G KG+RL++L+ +E F+SRDV F E+ +PF +     +E     +P    A +
Sbjct: 759  IFIGYPYGKKGWRLFDLENREQFVSRDVEFFETEYPFASTAEVVSERILTHVPHDEDA-D 817

Query: 1249 FEEDAGEEVTHVSQKQQTDVQSPITD--------------------------SEITDRLG 1350
             +E+  ++   V +   +D   P  D                          S+  + LG
Sbjct: 818  LDEEELDKGVEVGETLCSDQGHPTLDEKGGNEIEVEDQLNLEALSENVAELPSQTIETLG 877

Query: 1351 RGHRVRHAPSWLQDYVTNTVHHGSTTLKI------GGLKKPTTYDLDCFPFNYSPHMSST 1512
            +G R +   + L+ +VT+T    S + ++       G+  P T+ ++   F      S  
Sbjct: 878  KGQRQKFPSTKLKGFVTHTAQKISPSSQLPSLSSFSGMPYPITHYVNLEKF------SLA 931

Query: 1513 YAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKW 1692
            +  F++ + ++  EPTSY+EA KD  WREAM  E+ ALE N TW +T LP GKK +G KW
Sbjct: 932  HRAFVAGLDHN-KEPTSYVEAVKDHRWREAMQSEIQALENNGTWSVTHLPPGKKKLGCKW 990

Query: 1693 VYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLH 1872
            VYKIK  SDGT++R+KARLV  G  QIEG+D+ E+F+PVAK+VTVR ++A+A  + W+LH
Sbjct: 991  VYKIKHKSDGTVERFKARLVILGNHQIEGIDYNETFAPVAKMVTVRTVLAVAATKNWELH 1050

Query: 1873 HIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLG 2052
             +D++NAFLHG L EEV+M PP G+H  + G VC L +SLYGLKQA R W  + S  L  
Sbjct: 1051 QMDVHNAFLHGDLQEEVFMKPPPGFHTTQPGMVCRLHKSLYGLKQAPRCWFAKLSTALKT 1110

Query: 2053 FGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHA 2232
            +GF QS +D  LFV      +LA+++YVDD++ITG+    I   KTYLH  F +KDLG  
Sbjct: 1111 YGFEQSLYDYSLFVLQRQDCFLAVLVYVDDLIITGNDHTAISAFKTYLHTCFHMKDLGTL 1170

Query: 2233 KYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIG 2412
            KYFLG+E+ RS  G  LCQRKY +D++ +TGL+G KP STP  Q + +        A   
Sbjct: 1171 KYFLGVEVARSPTGILLCQRKYALDIISETGLLGSKPASTPLEQNHRLALATGDILAQPE 1230

Query: 2413 KFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPV 2592
            K+RRLVGRL+YL  +RP++SY V  LSQF+  P + HW+ A+ +++YLKG    G+    
Sbjct: 1231 KYRRLVGRLIYLCFTRPELSYCVHILSQFMQQPRQEHWEAALRVVRYLKGNPGQGILLRH 1290

Query: 2593 GDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAA 2772
                Q   + D+DW +C LTR+S+TG+ +  GNS                AEAEYRSMA 
Sbjct: 1291 DSSLQLYGWSDSDWASCPLTRRSLTGWFILLGNSPISWKTKKQHTVSRSSAEAEYRSMAT 1350

Query: 2773 TVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFK 2952
              CELKWL  L   L +S + P+ ++CD++AALHI  NPVFHERTKH+++DCH +R++  
Sbjct: 1351 ICCELKWLKGLLSSLGISHTQPMQIYCDSQAALHIAKNPVFHERTKHIEVDCHFIRDEIV 1410

Query: 2953 AGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGMCSSTHIPT 3087
               I   ++ T  Q AD+FTKALG + F + L KLG+  + H PT
Sbjct: 1411 KDHIRSTYVPTTAQLADIFTKALGRSQFLSLLGKLGI-HNLHAPT 1454