BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00008457
         (4532 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   942   0.0  
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   912   0.0  
gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) ...   917   0.0  
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo...   898   0.0  
gb|PNX93614.1| retrovirus-related Pol polyprotein from transposo...   900   0.0  
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   879   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   891   0.0  
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]   875   0.0  
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   882   0.0  
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]   870   0.0  
gb|PRQ29719.1| putative RNA-directed DNA polymerase [Rosa chinen...   866   0.0  
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   858   0.0  
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo...   855   0.0  
gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygro...   850   0.0  
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]   843   0.0  
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...   838   0.0  
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...   823   0.0  
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   826   0.0  
dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subt...   826   0.0  
gb|KYP31387.1| Retrovirus-related Pol polyprotein from transposo...   805   0.0  

>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  942 bits (2436), Expect = 0.0
 Identities = 530/1189 (44%), Positives = 712/1189 (59%), Gaps = 24/1189 (2%)
 Frame = +1

Query: 70   CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGN-----HDQHK-- 228
            C HC+ TGH  A CF+ HG+P    +  +  S      + +   +TG+     + +H   
Sbjct: 170  CTHCNRTGHTDAVCFRKHGFPSTTNRSNKGSSNR-PRRICTHCGKTGHTIEVCYQKHGFP 228

Query: 229  --EVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATL 402
                P  D TA V   ++     K+ + T   E        +    T  P     A++T 
Sbjct: 229  PGSKPLSDKTASVNHTVTGDC--KVTESTQSLE--------SQDVRTSFPIVCS-AIST- 276

Query: 403  ENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLT 582
                P SWILD+GA+ H+ +S    S+  PI+  + V  P G   + THSG V   ++  
Sbjct: 277  ----PSSWILDSGATDHVSSSLSHFSSFSPINP-IDVKLPTGQHVLATHSGTVKFTNSFY 331

Query: 583  LHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKD 762
            L DVL +P+F YNL+SIS+L  S + + +F    C+IQ+  T +     +    LY F  
Sbjct: 332  LVDVLYIPAFTYNLISISKLVSSLSCQLIFDHHSCIIQETNTMKKIGTVDVNEGLYSFTA 391

Query: 763  GXXXXXXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEIC 942
                       I   +       LWH R+GH S   L+   F   LS DT     SC  C
Sbjct: 392  SNIHHPSTNSVIVHPKCSIQPIDLWHFRMGHLSHERLQSFPF---LSVDTSF---SCNTC 445

Query: 943  HKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMS 1122
            H +KQ +LPF  S  ++S+ F+LLH+D+WGP +  S+ G  +FLTIVDD +R TW++LM 
Sbjct: 446  HHAKQKKLPFPLSHSYASQPFDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQ 505

Query: 1123 HKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQ 1302
            +K++    I  F+  +ETQF   VKV R+DNG EF+  +    F S GIIHQ TCV TPQ
Sbjct: 506  NKSETRQHIINFINQVETQFDKHVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCVETPQ 562

Query: 1303 QNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHG 1482
            QNGIVERKH+HLLNV R+L+FQ++LPS FW F+++HA +LIN +P+  LH  +PFE L+G
Sbjct: 563  QNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYG 622

Query: 1483 ASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSR 1662
                 S L  FGCL Y++    H++K   RA+ C+FLG+    KGY L++L  H LL SR
Sbjct: 623  HPCDISILCVFGCLCYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSR 682

Query: 1663 DVVFFEDSFP---------FAS-IPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESHP 1812
            +V+F ED FP         F+S +P+  N                   +S   S P   P
Sbjct: 683  NVLFHEDHFPSFTKPHSPSFSSPVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSPP--P 740

Query: 1813 LRRSSRISKPPAWLSDF-----ITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSIL 1977
            LRRS+R  +PP +L DF      T++ HSST +  P HS       + L   SF+H    
Sbjct: 741  LRRSTRPRRPPTYLQDFHGAFTSTSTAHSSTGIRHPLHSFL----SYDLLSPSFHH---- 792

Query: 1978 GATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGC 2157
                  ++ ++S+V EP +F++A KS  W+ AM  E+ ALE NNTWVLT+LPP K AIGC
Sbjct: 793  ------YVFSISSVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGC 846

Query: 2158 KWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWP 2337
            +WVYKVK + DG+++RYKARLVAKG+ Q  G+D+ D+FSPVAKL TVRL+++LA I  W 
Sbjct: 847  RWVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWH 906

Query: 2338 LFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKL 2517
            L QLDVNNAFLHG L+E++YM  P G + + PG+VC LQRSLYGLKQ SRQW A+    L
Sbjct: 907  LKQLDVNNAFLHGDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFL 966

Query: 2518 QQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLG 2697
             Q G+  S  DH LFL+ +              +++G +L+EI  L   L   F IKDLG
Sbjct: 967  IQHGYVPSPSDHSLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLG 1026

Query: 2698 YARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVD 2877
              +YFLG+E+ARN  G  L QRKY+LD+L D GML  K   TP+   + L A  G PL D
Sbjct: 1027 NLKYFLGLEVARNHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTD 1086

Query: 2878 PERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFY 3057
               +RRL+GRL+YL  TRPD+TY+VQQLSQFV++P T+H  A   +LRYLKG+P  G+F 
Sbjct: 1087 TAAYRRLVGRLIYLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFL 1146

Query: 3058 SAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRAL 3237
            S +SS+ L A+ D+DWA C DTR+S+TGF ++LG  L+SWK+KKQ TVSRSS+EAEYRAL
Sbjct: 1147 SVNSSVQLRAFSDSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRAL 1206

Query: 3238 GSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNL 3417
             +  CE+QWLSYL  D  +   +P  L+CDNQ+A+ I  NPVFHERTKH+EIDCH+VR+ 
Sbjct: 1207 ATTTCELQWLSYLLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDK 1266

Query: 3418 YKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 3564
              +G L L  VSS  QLAD  TK L    F   CSKLG+ ++H+   GG
Sbjct: 1267 VSTGLLKLLPVSSSQQLADILTKPLSPFVFRSHCSKLGMLNIHSQLEGG 1315



 Score =  100 bits (250), Expect = 2e-17
 Identities = 49/146 (33%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
 Frame = +1

Query: 4105 MVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSV 4284
            MV+SW+++S+S  +  + ++ D A D+W D+  R+   +   +  L+ + +++ QG++SV
Sbjct: 1    MVVSWLVHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSV 60

Query: 4285 VEYFTKLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQV 4446
             EYFTKL+ LWDEL    P P C    +       +I +R +  + MQFL GL++ Y+ V
Sbjct: 61   TEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNV 120

Query: 4447 RNQLLLMDPLPSVDKAYSMALRVEKQ 4524
            ++ +LLM+  P + K +S  ++ E+Q
Sbjct: 121  KSHVLLME--PPISKIFSYVVQQERQ 144


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  912 bits (2356), Expect = 0.0
 Identities = 521/1184 (44%), Positives = 697/1184 (58%), Gaps = 19/1184 (1%)
 Frame = +1

Query: 70   CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGNHDQHKEVPQLDI 249
            C HC  TGH    C++ HG+P   K L ++     A+  H+ T +    +  + +   D+
Sbjct: 1    CTHCGKTGHTIEVCYQKHGFPPGSKPLSDKT----ASVNHTVTGDCKVTESTQSLESQDV 56

Query: 250  TALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATLENLKPDSWI 429
                QQ   +AL + +QQ T G+      A  T F       S+           P SWI
Sbjct: 57   RFTPQQY--QALLALIQQSTTGTS-----ASCTSFPIVCSAIST-----------PSSWI 98

Query: 430  LDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPS 609
            LD+GA+ H+ ++    S+  PI+  + V  P G     THSG V   ++  L DVL +P 
Sbjct: 99   LDSGATDHVSSTLSHFSSFSPINP-IDVKLPTGQHVSATHSGIVKFTNSFYLVDVLYIPD 157

Query: 610  FKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXX 789
            F YNL+SIS+L  S + + +F    C+IQ+  T +     +  G LY F           
Sbjct: 158  FTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTANNIHNPSTN 217

Query: 790  LGIKDTESCNSSFLLWHRRLGHASFPVLKHL-DFFKGLSGDTDHTLDSCEICHKSKQHRL 966
              I   +       LWH R+GH S   L+ +   F  LS D      SC  CH  KQ +L
Sbjct: 218  SIIVHPKCSIQPIDLWHFRMGHLSQERLQLMKQSFPFLSVDKSF---SCNTCHHDKQKKL 274

Query: 967  PFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTL 1146
             F  S  ++ + F+LLH+D+WGP    S+ G  +FL IVDD +R TW++LM +K++    
Sbjct: 275  SFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKSETRQH 334

Query: 1147 ISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERK 1326
            I  F+  +ETQF   VKV R+DNG EF+  +    F S GIIHQ TCV TPQQNGIVERK
Sbjct: 335  IINFINQVETQFDKNVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNGIVERK 391

Query: 1327 HRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNL 1506
            H+HLLNV R+L+FQ++LPS FW F++ HAA+LIN +P+  LH  +PFE L+G     S L
Sbjct: 392  HQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISIL 451

Query: 1507 RPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDS 1686
            R FGCL Y++    H++K   RA+ C+FLG+    KGY L +L  H LL S++V+F ED 
Sbjct: 452  RVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDH 511

Query: 1687 FP---------FAS-IPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESH----PLRRS 1824
            FP         F+S +P+P N                   SS P   P+ H    PLRRS
Sbjct: 512  FPSFTKPNSPSFSSPVPIPYNYADYPSFPSSSIVE-----SSEP-PPPDQHSSPPPLRRS 565

Query: 1825 SRISKPPAWLSDF----ITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYT 1992
            +R  +PP +L DF     +   HSST +  P HS       +     SF+H         
Sbjct: 566  TRPRRPPTYLQDFHGAFTSTGPHSSTGIRHPLHSFI----SYDRLSPSFHH--------- 612

Query: 1993 AFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYK 2172
             ++ ++S+V +P +F +A KS  W+ AM  E++ALE NNTWVLT+LPP K AIGC+WVYK
Sbjct: 613  -YVFSISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYK 671

Query: 2173 VKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLD 2352
            VK + DG+++RYKARLVAKG+ Q  G+D+ D+FSPVAKL TVRL+I+LA I    L QLD
Sbjct: 672  VKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLD 731

Query: 2353 VNNAFLHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGF 2532
            VNN+FLHG L+E++YM  P G + + PG+VC LQRSLYGLKQ SRQW A+    L Q G+
Sbjct: 732  VNNSFLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGY 791

Query: 2533 TQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYF 2712
              S  DH LFL+ +              +++G +L+EI  L   L + F IKDLG  +YF
Sbjct: 792  VPSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYF 851

Query: 2713 LGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFR 2892
            LG+E+ARN  G  L QRKY LD+L D GML  K   TP+     L A  G P  D   +R
Sbjct: 852  LGLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYR 911

Query: 2893 RLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSS 3072
            RL+GRL+YL  TRP + Y+VQQLSQFV++P T+H  A   +L YLKG+P  G+F S +SS
Sbjct: 912  RLVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSS 971

Query: 3073 LCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVC 3252
            + L A+ D DWA C DTR+S+TGF ++LG  L+SWK+KKQ TVSRSS+EAEYRAL +  C
Sbjct: 972  VQLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTC 1031

Query: 3253 EIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGF 3432
            E+QWLSYL  D  + +  P  L+CDNQ A+ I  NP+FHERTKH+EIDCH+VR+   +G 
Sbjct: 1032 ELQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGL 1091

Query: 3433 LHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 3564
            L L  VSS LQLAD  TK L    F    SKLG+ ++H+   GG
Sbjct: 1092 LKLLPVSSSLQLADILTKPLSPFVFHSHYSKLGMLNIHSQLEGG 1135


>gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras
            hygrometricum]
          Length = 1404

 Score =  917 bits (2371), Expect = 0.0
 Identities = 500/1171 (42%), Positives = 699/1171 (59%), Gaps = 8/1171 (0%)
 Frame = +1

Query: 61   KLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGNHDQHKEVPQ 240
            ++IC HC    H   +C+KLHGYP    + K + S+  A++ H  +  +  H + +++  
Sbjct: 275  RIICSHCHFRNHTVDKCYKLHGYPPGHPKFKSQISQGSAHA-HQASSSSETHQETQQIDH 333

Query: 241  LD-ITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATLENLKP 417
             D +T    +++ + L+SKLQ     +   +   H  +   + L      A + +  +  
Sbjct: 334  SDSLTQSQCKQLIEFLSSKLQ-----TRQNLLMEHQPETTVSCLTGICS-ATSHIPAITR 387

Query: 418  DSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVL 597
              WI+DTGA+ H+C S  +  +   I S   V  P+  T  VT +G V + S L L +VL
Sbjct: 388  KDWIMDTGATHHICCSLSMFKSSRAIQS--KVVLPNTLTIPVTIAGTVAVTSNLVLQNVL 445

Query: 598  LVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXX 777
             VP F++NLLS+S LT + N    F    C IQD+    +  +G+ +G+LY+ +      
Sbjct: 446  YVPVFQFNLLSVSSLTDNHNCSVSFMSDSCKIQDISQIRMIGMGKRIGNLYVLQQPDRFL 505

Query: 778  XXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQ 957
                  I +T   NS   LWHRR+GH SF  L  L     L+ +    ++ C  CH SKQ
Sbjct: 506  PSY---ICNTFVSNSE--LWHRRMGHPSFNKLSSLK--NVLNIENTDIVNICHSCHLSKQ 558

Query: 958  HRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQV 1137
             RLP  S    S+R FELLHID WGP++  S+ G  FF TIVDD SR TWVY++  K+ V
Sbjct: 559  RRLPLASRNNISARIFELLHIDTWGPFSQTSVDGFRFFFTIVDDHSRYTWVYMLKSKSDV 618

Query: 1138 PTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIV 1317
             ++   F +++ TQF   VK  RSDN  E    +    F   GI H  +CV  PQQN +V
Sbjct: 619  LSIFPDFCRMVSTQFGVTVKSVRSDNAPELGFAD---FFAKAGITHYHSCVERPQQNSVV 675

Query: 1318 ERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTY 1497
            ERKH+H+LNVARAL+FQS +P  +W   +  + YLINR PS +L  KTPFELLHG  P+Y
Sbjct: 676  ERKHQHILNVARALLFQSHIPLDYWCDCINTSVYLINRTPSPILAHKTPFELLHGKLPSY 735

Query: 1498 SNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFF 1677
            S+L+ FGCL YA+     + KF+ RA +CVF+GY  G KGY+L +L+ + +  SRDV+F 
Sbjct: 736  SHLKVFGCLCYASTLLSSRHKFSPRAIRCVFIGYPPGYKGYKLLNLETNEIFISRDVIFH 795

Query: 1678 EDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESHPLRRSSRISKPPAWLS 1857
            E++FP+ +    S                       P    ++    R+SR    P+ L 
Sbjct: 796  ENTFPYQNTSPMS--------LSDMTFEVSPSSQITPSIPADAQQHSRTSRPHNTPSHLR 847

Query: 1858 DFITNSVHS--STPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPS 2031
            D+   S+ +  ST  A P H                N+S  L +++ AF+ N+S++ EP+
Sbjct: 848  DYHCYSISTPCSTSTAHPIHPL-------------VNYSK-LSSSHRAFVQNISSILEPT 893

Query: 2032 SFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYK 2211
            +FSQA    +W  AM  EL ALE N+TW + SLP GK A+GC+WVYK K   DG+++RYK
Sbjct: 894  TFSQAVSLPEWRQAMDEELKALELNHTWSIVSLPQGKSAVGCRWVYKAKFAADGSLQRYK 953

Query: 2212 ARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDED 2391
            ARLVAKG+ Q+ G+DYL++FSPVAKLVTVR ++ALA ++GW L QLDVNNAFLHG L E+
Sbjct: 954  ARLVAKGYTQQEGLDYLETFSPVAKLVTVRTLLALAAVRGWFLIQLDVNNAFLHGDLTEE 1013

Query: 2392 IYMVPPDGYSKAKPGE-----VCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHC 2556
            +YM  P G+     GE     VC L +S+YGLKQ SRQW AKF   L   GF QS  D+ 
Sbjct: 1014 VYMTLPPGF--CSEGELPSRAVCKLHKSIYGLKQASRQWFAKFSSTLLSIGFIQSHADNS 1071

Query: 2557 LFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARN 2736
            LF+R                +I+  + +    LK +L+  F +KDLG  +YFLG+E+AR+
Sbjct: 1072 LFIRSDKNIFLALVVYVDDIVIATNDQNAASELKDFLNSKFKLKDLGNLKYFLGIEVARS 1131

Query: 2737 TDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLY 2916
            T G  + QR Y + +L +AG+L CK   TP+    KL    G+ L DP  +RRLIGRLLY
Sbjct: 1132 TRGVSICQRNYAMTLLTEAGLLGCKPRTTPMEANTKLAQDSGEMLSDPASYRRLIGRLLY 1191

Query: 2917 LNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCD 3096
            L +TRPD+ ++V +LSQ+V+ P   H +AA+++L+Y+KG+   GLFYS+ S L L A+ D
Sbjct: 1192 LTITRPDLVFAVNKLSQYVSMPRIPHMEAALNILKYVKGTVGQGLFYSSSSDLKLRAFSD 1251

Query: 3097 ADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYL 3276
            ADW +C+DTR+S+TG+C+FLG  L+SW+ KKQ TVSRSSAEAEYR+L +  CEI W+  L
Sbjct: 1252 ADWGACLDTRRSVTGYCVFLGESLISWRAKKQQTVSRSSAEAEYRSLAASTCEILWIHQL 1311

Query: 3277 CADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSS 3456
             ADLG++   P  L+CD+QAA+HI  NPVFHERTKH++IDCH+VR   +   + L HVSS
Sbjct: 1312 LADLGVTYNEPTVLFCDSQAAVHIASNPVFHERTKHIDIDCHIVREKVQQKIVKLMHVSS 1371

Query: 3457 RLQLADFFTKSLGRAAFLLLCSKLGLFDLHN 3549
              QLAD FTK L  + F  L  K+G+ ++H+
Sbjct: 1372 ERQLADLFTKPLLPSRFHNLLKKMGVHNIHD 1402



 Score =  197 bits (501), Expect = 4e-47
 Identities = 89/216 (41%), Positives = 146/216 (67%)
 Frame = +1

Query: 3883 TESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPK 4062
            T  E    P  L++ DHPGL+LVS+ L G+NY +WRR+M++AL AK KLGFI+  ++ P+
Sbjct: 18   TTLEDSSSPYYLHNGDHPGLTLVSNPLIGSNYNTWRRAMIVALTAKNKLGFIDRSIDRPR 77

Query: 4063 EDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQL 4242
             +   Y  W + + MVISWILNS+++++ D+ +Y  +A+++W D+ +RF + N P IYQ+
Sbjct: 78   SEDLLYGSWIRCNSMVISWILNSVARNIADSLMYMQTAEEIWTDLYERFHESNAPRIYQI 137

Query: 4243 ERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDTRKLIDERDMNRKLMQFLMG 4422
            ++ ++ + QG+M V  Y+TKL+ LWDEL    P  AC   + +          +M FLMG
Sbjct: 138  KKLLSGLQQGSMDVSSYYTKLRTLWDELRDYQPTSACTCGSMREWFNYQNQECVMHFLMG 197

Query: 4423 LHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRN 4530
            L++SY QVR Q+L+++PLP++ K +++ ++ E+QR+
Sbjct: 198  LNDSYAQVRAQVLMIEPLPTIAKVFALVIQEERQRS 233


>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1352

 Score =  898 bits (2320), Expect = 0.0
 Identities = 512/1202 (42%), Positives = 697/1202 (57%), Gaps = 33/1202 (2%)
 Frame = +1

Query: 58   AKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEE---RSRMMANSVHSETI--ETGNHDQ 222
            + + C +C   GH +  C++ HG+P   +    +   ++ +   S+ + T+  E   +DQ
Sbjct: 178  SSVTCTYCGKQGHAENVCYRKHGFPSNHENKTNKGVYKASIGKTSIVNSTVTDECKTNDQ 237

Query: 223  HKEVPQLDITALVQQEISKALASKLQQGTGGSEYP----MNFAHFTDFA--------GTI 366
             +     D     QQ   + L   +QQ T  S        N  H             GT+
Sbjct: 238  QQATITQDYRFTPQQY--QVLMDLIQQCTNDSSASPSPSTNHIHSVSSCSTQPSPPPGTV 295

Query: 367  LPFSSQYALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISS--HVSVCFPDGSTKV 540
               S+   ++T       SW++D+GA+ H+ +S   +SN    +S   ++V  P G   +
Sbjct: 296  SSISTHTQIST-------SWVIDSGATDHVSSS---LSNFFTYNSINPITVKLPTGQHVL 345

Query: 541  VTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVK 720
             TH+G V    T  L DVL +P FKYNL+SIS+L  S +V+ +F+ ++CLIQD+ T+E  
Sbjct: 346  ATHAGVVKFTDTFYLTDVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTKEKI 405

Query: 721  AVGEAVGSLYIFKDGXXXXXXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGL 900
               +    LY               I + E    +  LWH RLGH  +  L  +  +   
Sbjct: 406  GTVDVEVGLYTMTTAVVQPSILS-AIYNPEWSIQNIDLWHFRLGHLPYDKLHSMKQYYPC 464

Query: 901  SGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTI 1080
                 H   +C  CH +KQ +L F  S  H+ +SF LLHID+WGP +  S+ G  +FLTI
Sbjct: 465  LYSNKHF--TCNTCHHAKQKKLSFPLSHSHALQSFALLHIDIWGPCSKTSIHGHRYFLTI 522

Query: 1081 VDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHS 1260
            VDD +R TWV+LM+ K      ++ F+  IE QF   VKV R+DNG EF+     N F S
Sbjct: 523  VDDHTRYTWVFLMASKADTCNCVTNFISHIENQFATRVKVIRTDNGAEFSMN---NYFDS 579

Query: 1261 HGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPS 1440
             GIIHQ TC+ TP+QN IVERKH+HLLNV RAL+FQS+LP  FW F+++HA Y+IN +P+
Sbjct: 580  KGIIHQTTCIETPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALMHATYIINCIPT 639

Query: 1441 ALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGY 1620
              L   +PFE L+G     + LR FGCL Y +    H++K   RA  CVFLG+    KGY
Sbjct: 640  PFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRASPCVFLGFQPHTKGY 699

Query: 1621 RLYDLDNHSLLTSRDVVFFEDSFPF-----------ASIPVP--SNXXXXXXXXXXXXXX 1761
              ++L+  S+  SR+VVF+E+ FP+            S+P P  SN              
Sbjct: 700  LTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSASSTPSLPTPFTSNPMIHDYNFYPPSPS 759

Query: 1762 XXXXXSSAPISQPESHPL-RRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDF 1938
                 S +    P S P+  R +R   PP++L D+      S+ P +SP      DS   
Sbjct: 760  SHPPHSLSSPESPTSSPIPSRPTRSRHPPSYLRDYHMTFT-STGPSSSPGIRYPLDS--- 815

Query: 1939 SLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWV 2118
                 S+N    L   +  F+ ++S + EP S+++A KS  W+ AM  E+TALE NNTW 
Sbjct: 816  ---VISYNR---LSHPFRHFIMSISLLTEPKSYAEASKSDCWIKAMTDEITALEANNTWT 869

Query: 2119 LTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTV 2298
            +TSLPP K AIGCKW+YKVK   DG+VER+KARLVAKG+ Q  G+D+LD+F+PVAKL TV
Sbjct: 870  VTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVAKGYTQLEGLDFLDTFAPVAKLTTV 929

Query: 2299 RLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQ 2478
             L+++LA I  W L QLD+NNAFLHG L+E++YM  P G +   PG+VC L RSLYGLKQ
Sbjct: 930  HLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTTPGQVCKLNRSLYGLKQ 989

Query: 2479 VSRQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALK 2658
             SRQW A+    + Q GF  S+ DH LFL+ T              +++G +L+EI  + 
Sbjct: 990  ASRQWYARLSTFIMQQGFHHSSADHSLFLKFTNSACTALLVYVDDIVLAGNDLTEIHQIT 1049

Query: 2659 RYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPG 2838
              L   F IKDLG   YFLG+E+ARN+    L QRKY LDIL D GML C  + T +   
Sbjct: 1050 ALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLCQRKYTLDILSDTGMLACCPSSTLMDYK 1109

Query: 2839 LKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLL 3018
              L +  G PL DP  +R+LIGRL+YL  T PD+T++VQ LSQF + P T H  AA  +L
Sbjct: 1110 AALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPDITHAVQHLSQFASKPTTYHQHAAFRIL 1169

Query: 3019 RYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTT 3198
            RYLK +P  G+F SA+SSL L+++ D+DWA C+DTR+S+TGF ++LG  L+SWK+KKQ T
Sbjct: 1170 RYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAVYLGHSLISWKSKKQAT 1229

Query: 3199 VSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERT 3378
            VSRSS+EAEYRAL S  CEIQWL+YL  D  L    P  L+CDNQ+ + I  N VFHERT
Sbjct: 1230 VSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDNQSVLQIACNQVFHERT 1289

Query: 3379 KHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT* 3558
            KH+EIDCHLVR    +G L L  VSS  QLAD +TK+L  + F  L SKLG+ D+++   
Sbjct: 1290 KHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFNELNSKLGMSDIYSQLA 1349

Query: 3559 GG 3564
            GG
Sbjct: 1350 GG 1351



 Score = 82.4 bits (202), Expect = 8e-12
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
 Frame = +1

Query: 4186 WDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDT 4365
            W     R+   +   I  L+ + +++ QG++S+ E+FTKL+ +WDEL    P P C S T
Sbjct: 39   WSRSISRYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTC-SCT 97

Query: 4366 RKL-------IDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQ 4524
            +K        I +R    + MQFL GL+E Y  V++ +LLMDP+P + K +S  ++ E+Q
Sbjct: 98   QKCSCNVIPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQ 157


>gb|PNX93614.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1430

 Score =  900 bits (2326), Expect = 0.0
 Identities = 530/1250 (42%), Positives = 698/1250 (55%), Gaps = 62/1250 (4%)
 Frame = +1

Query: 1    GEWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMAN 180
            G  N GRG+G     + + +   C HC    H    CF  +G+P  ++    + S   + 
Sbjct: 263  GSGNRGRGKGRRNFGRGQHSTRYCTHCGGDNHIIDNCFVKYGFPPGYQSKGVQSSNAKSV 322

Query: 181  SVHSETIETGNHDQHKEVPQLDITALVQQEISKALASKLQQGTGG-SEYPMNFAHFTDFA 357
            ++ S T    N D          ++LV    S A+AS L +  G   ++   F   T+  
Sbjct: 323  NLASTT----NSD----------SSLVS---SSAMASSLNELQGQFQQFLKLFQQQTESN 365

Query: 358  GTILPFSSQYA--LATLENLKPD------SWILDTGASRHMCASSKLMSNLVPISSHVSV 513
             T    +S  +  +A   N  P       +W+LD+GA+ H                    
Sbjct: 366  PTPASVNSIISDPVALNANSSPTYGKHSVTWVLDSGATDH-------------------- 405

Query: 514  CFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLI 693
                     +T+S Q      ++ H +  VP      +S+    ++SN K +        
Sbjct: 406  ---------ITYSMQ----HFISYHHIKSVP------ISLPNGNKNSNQKMI-------- 438

Query: 694  QDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXXLGIKDTESCNSSF-------------LL 834
                      + +  G LY+ +            +      NS F             +L
Sbjct: 439  ---------GIAKKKGGLYVIESPVAASISCNF-VSPFSGSNSGFPICNVASQVDKSSML 488

Query: 835  WHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELL 1014
            WH RLGH S  + K +           H+   C+ICH +KQ RLPF  S   SS  FELL
Sbjct: 489  WHNRLGHVSDMIHKSISVQFPFVPFKSHSTP-CDICHYAKQKRLPFPDSNTRSSHIFELL 547

Query: 1015 HIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIV 1194
            H D+WGP    S+ G  +FLT+VDDFSR TW+ LM +KT+    I  F+  IETQF A +
Sbjct: 548  HADIWGPNGIVSVNGHKYFLTLVDDFSRFTWIILMKNKTETRNHIMNFVNYIETQFHAKL 607

Query: 1195 KVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSS 1374
            K  RSDNG EF      + F + GI HQ++CV TPQQNGIVERKH+H+LNVARAL FQ+ 
Sbjct: 608  KSLRSDNGNEF---RMHDFFLAKGIAHQRSCVETPQQNGIVERKHQHILNVARALSFQAF 664

Query: 1375 LPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHK 1554
            LPS FW  S+LH+ +LINRLP+  L  K+P+E+L    PT  +LR FGCL++A+  H H+
Sbjct: 665  LPSNFWHLSILHSVHLINRLPTPFLQHKSPYEVLFQQPPTLLHLRTFGCLAFASTLHNHR 724

Query: 1555 SKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFASI---------- 1704
            +KF  RA K VFLGY  G KG+ LYD+ NHS L SR+V+F+ED FP +S+          
Sbjct: 725  TKFMPRARKTVFLGYRDGTKGFLLYDISNHSFLVSRNVIFYEDVFPLSSVNSSHTSSTTT 784

Query: 1705 -----------------PVP----SNXXXXXXXXXXXXXXXXXXXSSAPISQPESH---- 1809
                             P P    +                    S++P   P++     
Sbjct: 785  LDNFVLPIDPPNFPSSCPAPLSVSTGTNPLTDHAENSATLVDNQVSNSPAVPPQNSSIPA 844

Query: 1810 PLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGAT- 1986
            P R S+RI K P +L DF     H S     PS      S  FS  P S + S    AT 
Sbjct: 845  PTRVSNRIRKIPGYLQDF-----HCSL---LPSQHQSSSSNAFSTYPISSSLSYTNCATA 896

Query: 1987 YTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWV 2166
            Y  F  ++S   EP +F QACKS  W +AM+ EL ALE N TW +  LP GK  IGCKWV
Sbjct: 897  YKHFCLSISTTIEPKTFKQACKSDCWKEAMKSELAALELNRTWSIVDLPTGKNPIGCKWV 956

Query: 2167 YKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQ 2346
            YK+K   DG++ERYKARLVAKG+ Q  GVDY D+FSPVAKL TV+ ++ALA+IKGW L Q
Sbjct: 957  YKIKHNADGSIERYKARLVAKGYTQMEGVDYFDTFSPVAKLTTVKTLLALASIKGWFLEQ 1016

Query: 2347 LDVNNAFLHGYLDEDIYMVPPDGY----SKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLK 2514
            LDVNNAFLHG L+E++YM  P G     S +   +VC L +SLYGLKQ SRQW +K    
Sbjct: 1017 LDVNNAFLHGDLNEEVYMSLPPGVIIPNSCSNTPKVCRLHKSLYGLKQASRQWYSKLSSA 1076

Query: 2515 LQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDL 2694
            L   G++QSA DH LFL++               +++G N  EI ++K +LD  F IKDL
Sbjct: 1077 LLSLGYSQSAADHSLFLKKVGSSFTALLVYVDDIVLAGNNSLEITSVKSFLDKRFQIKDL 1136

Query: 2695 GYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLV 2874
            G  R+F+G+EIAR+  G +LNQRKY L++L D+G L  K + TP  P LKL   E  P  
Sbjct: 1137 GNLRFFVGLEIARSKKGILLNQRKYTLELLQDSGNLAAKPSSTPYDPSLKLHDSESPPYN 1196

Query: 2875 DPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLF 3054
            DP  +RRLIGRLLYL  TRPD+T++VQQLSQFV+SP   H+ AA  +LRYLK SP+ GLF
Sbjct: 1197 DPSGYRRLIGRLLYLTTTRPDITFAVQQLSQFVSSPREVHFQAATKVLRYLKASPAKGLF 1256

Query: 3055 YSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRA 3234
            +S+ SSL L  + D+DWA+C  TRKS+TG+C+FLG+ L+SWK+KKQ+TVSRSS+EAEYRA
Sbjct: 1257 FSSSSSLKLSGFSDSDWATCAITRKSITGYCVFLGTSLISWKSKKQSTVSRSSSEAEYRA 1316

Query: 3235 LGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRN 3414
            L S  CE+QWL YL  DLG+    P  ++CDN++AI++  NP FHERTKH+EIDCH+VR 
Sbjct: 1317 LASLSCELQWLHYLFKDLGIKFDAPAMVYCDNKSAIYLAHNPSFHERTKHIEIDCHVVRE 1376

Query: 3415 LYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 3564
              +SG +HL  V S  QLAD  TK L  +AF  L SKLGL D+H+P  GG
Sbjct: 1377 RIQSGLIHLLPVPSSSQLADVLTKQLSSSAFASLISKLGLLDIHSPACGG 1426



 Score =  143 bits (361), Expect = 2e-30
 Identities = 76/216 (35%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
 Frame = +1

Query: 3904 DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYD 4083
            +P  L+ +++P + LV+  L G NY SW RSM IAL +K K+ F++G +E P+   P Y+
Sbjct: 15   NPYYLHPNENPAVVLVTPLLDGKNYHSWLRSMKIALLSKNKMKFVDGTLEQPRVSDPLYE 74

Query: 4084 QWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANM 4263
             W + + MV+SWI  SIS D+  + I+ D A  +W D+  RF   +   I  L+ +I  +
Sbjct: 75   PWIRCNSMVLSWIQRSISPDIAKSIIWFDHASAVWKDLEFRFSHGDMFKISDLQEEILRL 134

Query: 4264 NQGNMSVVEYFTKLKRLWDELACIMPLPACE----------SDTRKLIDERDMNRKLMQF 4413
            +QG++ +  Y+T+LK L +E+    P+  C           +D +K   E+D    +++F
Sbjct: 135  HQGSLDISSYYTQLKSLSEEIEIYRPVRDCTCAIPCSCGAVADMKK-YREQDC---VLKF 190

Query: 4414 LMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEK 4521
            L GL+E Y  VR+Q+++M+PLP + K +S+ L+ E+
Sbjct: 191  LKGLNEQYSHVRSQIMMMEPLPPLHKVFSLVLQQER 226


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  879 bits (2270), Expect = 0.0
 Identities = 480/1030 (46%), Positives = 624/1030 (60%), Gaps = 34/1030 (3%)
 Frame = +1

Query: 577  LTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLY-I 753
            L LHDVL VPSF  NL+S+SQL  S          +CLI    T+++    +    LY I
Sbjct: 1    LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60

Query: 754  FKDGXXXXXXXXLGIKDTESCNSS-FLLWHRRLGHAS----------FPVLKHLDFFKGL 900
             +D           + +T S +SS  +LWH RLGH S          FP++ +       
Sbjct: 61   IRDSATRSQLTQPFVGNTISKDSSDSVLWHHRLGHLSNSTHRIIASQFPIVSY------- 113

Query: 901  SGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTI 1080
                 H    C+ICH +KQ RLP   S   S+   ELLH D+WGPY+  S+ G  +FLT+
Sbjct: 114  ----QHHDVPCDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTL 169

Query: 1081 VDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHS 1260
            VDDFSR TW+ +M  K++    ++ F+  IETQFQ  +K  R+DNG+EF   +   LF S
Sbjct: 170  VDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHD---LFLS 226

Query: 1261 HGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPS 1440
             GIIHQ +CV TPQQNG+VERKH+H+LN ARAL FQ+SLP  FW F++ HA +LINR+PS
Sbjct: 227  KGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPS 286

Query: 1441 ALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGY 1620
             LL  KTP++ LH   P   +LR FGCL+YA+    H++KF  RA K V LGY  G KGY
Sbjct: 287  PLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGY 346

Query: 1621 RLYDLDNHSLLTSRDVVFFEDSFPF-----ASIPVPSNXXXXXXXXXXXXXXXXXXXSSA 1785
             LYDL +H    SR+V F E +FPF      S+  PS                      +
Sbjct: 347  LLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPS 406

Query: 1786 PIS-------------QPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPD 1926
            P S              P   P R S+R+ +PP++L D+  + +  +  + S S  + P 
Sbjct: 407  PTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPH 466

Query: 1927 SGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQN 2106
            S   +L             +Y  F  ++S   EP +++QA K   W+ AM+ EL AL+ N
Sbjct: 467  SISSTLT------YDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMN 520

Query: 2107 NTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAK 2286
             TW +  LP GKR IGCKWVYK+K   DG++ERYKARLVAKG+ Q  G+DYLD++SPVAK
Sbjct: 521  QTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAK 580

Query: 2287 LVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPG----EVCHLQ 2454
            L TVR+++AL  IKGW L QLDVNNAFLHG L E++YM  P G S         +VC L 
Sbjct: 581  LTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLH 640

Query: 2455 RSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTN 2634
            +S+YGLKQ SRQW +K    L   G++ S  DH LF++ +              I++G +
Sbjct: 641  KSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGND 700

Query: 2635 LSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKA 2814
              EID +K  L   F IKDLG  RYFLG+EIAR+  G +LNQRKY L+IL D G L  K 
Sbjct: 701  KPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKP 760

Query: 2815 AITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSH 2994
            + TP  P LKL +  G P  D   +RRLIGRLLYL  TRPD++Y VQQLSQFV+ P   H
Sbjct: 761  SSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIH 820

Query: 2995 WDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVS 3174
            + AA  +LRYLKGS   GLFYS+ +SL L A+ D+DWASC  +RKS+TGFC+FLGS L+S
Sbjct: 821  YQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLIS 880

Query: 3175 WKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQ 3354
            W++KKQ+T+SRSS+EAEYRAL S  CE+QWL YL  DL  S+  P +++CDN++AI++  
Sbjct: 881  WRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAH 940

Query: 3355 NPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGL 3534
            NP FHERTKH+EIDCH++R   +S  LHL  V S  QLAD FTK L   +F    SKLGL
Sbjct: 941  NPTFHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGL 1000

Query: 3535 FDLHNPT*GG 3564
            +D+H+   GG
Sbjct: 1001 YDVHSSACGG 1010


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  891 bits (2303), Expect = 0.0
 Identities = 504/1200 (42%), Positives = 690/1200 (57%), Gaps = 35/1200 (2%)
 Frame = +1

Query: 70   CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMAN-SVHSETIETGNHDQHKEVPQLD 246
            C  C   GH ++ C++ HG+PD   +    R +  ++   +  T++T  + +H   P   
Sbjct: 225  CNFCGRNGHTESTCYRKHGFPDKNGKSSSNRGKACSHCGKNGHTVDTC-YKKHGFPPG-- 281

Query: 247  ITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATLENLKPDSW 426
                                            F++        S Q  + T  +     W
Sbjct: 282  ------------------------------HRFSNNKSASANSSVQPHICTTHSFDTTPW 311

Query: 427  ILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVP 606
            I+D+GA+ H+  S +  ++   I   V V  P G     THSG V  +S   L DVL + 
Sbjct: 312  IIDSGATDHVTCSLQFFTSYKLIEP-VIVNLPTGHKVTATHSGTVYFSSNFQLTDVLYIS 370

Query: 607  SFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXX 786
            SF +NL+S+S+L  +++ +  F  + C IQD+RT+      +  G LY            
Sbjct: 371  SFAFNLISVSKLVSTTSYQITFTNNVCFIQDIRTKMKIGSVDVRGGLYQLIPHHFKPPFI 430

Query: 787  XLGIKDTESCNSSFLLWHRRLGHASFPVLKHLD-FFKGLSGDTDHTLDSCEICHKSKQHR 963
               I   +       LWH RLGH S   L ++   +  L+ + D T   C ICH +KQ +
Sbjct: 431  HSTIIHPKCDVIPIDLWHFRLGHLSNTRLHNMQQLYPCLTINKDFT---CNICHYAKQRK 487

Query: 964  LPFISSQIHSSRSFELLHIDVWGPYNHFS-LTGTPFFLTIVDDFSRATWVYLMSHKTQVP 1140
            L F SS   +SR F LLH+D+WGPY+  S + G  FF TIVDD +  TW++LM +K++  
Sbjct: 488  LSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLMINKSETR 547

Query: 1141 TLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVE 1320
              IS F+ LIE QF   ++  ++DNG EF     QN F+S GI+HQ TC+ TPQQNG+VE
Sbjct: 548  MHISNFINLIENQFNTRIQTIQTDNGAEFLM---QNFFNSKGIVHQTTCIETPQQNGVVE 604

Query: 1321 RKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYS 1500
            RKH+HLLNV  AL+F S LP  FW +++LHA YLINR+ + LL  KTPF+ L+G +   +
Sbjct: 605  RKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLYGQTCDIT 664

Query: 1501 NLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFE 1680
             LR FGCL Y + +  ++ K   RA+ CVFLG+    KGY  YDL   ++  SR+V F+E
Sbjct: 665  ELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYE 724

Query: 1681 DSFPF-------ASIPVPS------------------NXXXXXXXXXXXXXXXXXXXSSA 1785
            + FP        ++IPV S                  +                   S A
Sbjct: 725  NHFPLLQSTSSTSNIPVVSPISFGIHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLA 784

Query: 1786 PIS------QPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLA 1947
            P S       P S PLRRS+R+  PP++L D+     HS T  ++  H          L 
Sbjct: 785  PYSTTADSLPPNSSPLRRSTRLRNPPSYLQDY----HHSLTSTSTNLHPG-------MLY 833

Query: 1948 P-TSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLT 2124
            P   +   S L   + AF++++S V EP S+++A K   W+ AM  EL AL+ N TW LT
Sbjct: 834  PIEKYISYSRLSNDFQAFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLT 893

Query: 2125 SLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRL 2304
             LPP K+A+GC+W+YK+K   DG++ERYKARLVAKG+ Q  G+DYL +FSPVAKL TVRL
Sbjct: 894  PLPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRL 953

Query: 2305 VIALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVS 2484
            ++ALA +  W L QLDVNNAFLHG L+E++YM  P G       +VC LQ+SLYGLKQ S
Sbjct: 954  LLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQAS 1013

Query: 2485 RQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRY 2664
            RQW AK    L   G+ QSA DH LF++ +              +++G NLSEI  +   
Sbjct: 1014 RQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGL 1073

Query: 2665 LDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLK 2844
            LD  F IKDLG  +YFLG+E+ARN  G  L+QRKYVLDIL D GM+  +   TP+    +
Sbjct: 1074 LDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSR 1133

Query: 2845 LRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRY 3024
            L A  G PL DP  +RRL+GRL+YL  TRPD++Y V  LSQF+++P T+H  A   +LRY
Sbjct: 1134 LSASSGTPLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRY 1193

Query: 3025 LKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVS 3204
            LK +P  GLF+  +SSL L+A+ D+DWA C+DTR+S+TGF ++LG  L+SW++KKQ TVS
Sbjct: 1194 LKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVS 1253

Query: 3205 RSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKH 3384
            RSS+EAEYRAL +   E+QWL+YL  DL + +  P  L+CDNQ+A+HI  N VFHERTKH
Sbjct: 1254 RSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHERTKH 1313

Query: 3385 LEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 3564
            ++IDCHLVR   +SG L L  V+S  QLAD FTKSL  + F  L SKLG+ +L++   GG
Sbjct: 1314 IDIDCHLVREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLNLYSQLEGG 1373



 Score =  147 bits (371), Expect = 1e-31
 Identities = 72/201 (35%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
 Frame = +1

Query: 3940 LSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISW 4119
            ++LVS  L   NY SW RSML AL AK K+ F++G    P      Y  W++ + MV+SW
Sbjct: 1    MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60

Query: 4120 ILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFT 4299
            ++ S+S  +  + ++ DSA+++W D+  R+   +   I  L+ + +++ QG++SV +YFT
Sbjct: 61   LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120

Query: 4300 KLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQVRNQLL 4461
            +L+ +WDEL    P P C    +       ++ +R +  + MQFL GL++ Y  VR+ +L
Sbjct: 121  QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVL 180

Query: 4462 LMDPLPSVDKAYSMALRVEKQ 4524
            LMDPLP ++K +S   + E+Q
Sbjct: 181  LMDPLPPINKIFSYVAQQERQ 201


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score =  875 bits (2262), Expect = 0.0
 Identities = 474/1053 (45%), Positives = 630/1053 (59%), Gaps = 10/1053 (0%)
 Frame = +1

Query: 427  ILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVP 606
            I+D+GA+ H+ +S  L+ N    +    V  P G    +T  G + LNS  TL +VL VP
Sbjct: 110  IIDSGATDHITSSPTLLVNSSKNTFLPPVAMPSGEQAPITSIGNLPLNSAATLKNVLGVP 169

Query: 607  SFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXX 786
            SFK +L+S+S++T+  N    FFP +C++QDL T     +GE    LY            
Sbjct: 170  SFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGLYYLVALASEKPKT 229

Query: 787  XLGIKDTESCNS-------SFLLWHRRLGHASFPVLKHLDFF-KGLSGDTDHTLDSCEIC 942
                  T SC S       S  LWHRRLGH S      LDF  K L      + ++C++C
Sbjct: 230  QTPSAATTSCRSPSSQVTSSTALWHRRLGHLSS---SRLDFMAKHLLNFHFQSNNACDVC 286

Query: 943  HKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMS 1122
              +KQ +LPF  S I S R FEL+H D+WGPY   SL+G  +FLTIVDD+SR T V+ M 
Sbjct: 287  ALAKQRQLPFSVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTXVFFMH 346

Query: 1123 HKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQ 1302
            HK++   L+  F   ++TQF   +   R DNG EF S   +  F   G  +Q +CVYTPQ
Sbjct: 347  HKSETQHLLVNFFSFVQTQFHVSIANIRVDNGGEFFSX--REFFKQKGTTYQHSCVYTPQ 404

Query: 1303 QNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHG 1482
            QNG+VERKHRH+L  ARA  FQ+ LP  FW   V  A ++INRLP+ LL  +TPFE L+G
Sbjct: 405  QNGVVERKHRHILESARAFXFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFERLYG 464

Query: 1483 ASPTYSNLRPFGCLSYAANTH-PHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTS 1659
              P+YS++R FGCL+YA N H PHK  FA RA +C+FLGY  GQK Y+LYDLD H + TS
Sbjct: 465  KLPSYSHIRVFGCLAYATNVHVPHK--FAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTS 522

Query: 1660 RDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESHP-LRRSSRIS 1836
            RDVVF E  FP+ SIP PS+                    S  ++ P   P LRRS R  
Sbjct: 523  RDVVFHETIFPYESIPSPSSNSDPFLL-------------SHHLASPPPEPILRRSQRPH 569

Query: 1837 KPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSN 2016
             PP  L D++ N V S  P   P  S+ P  G       +F         + +F A +S 
Sbjct: 570  HPPMALRDYVCNQVTS--PNHLPPLSSSPQKGT-RYPLCNFVSYHRYSPQHRSFTAAVSQ 626

Query: 2017 VEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGT 2196
              EP+S+++A   + W +AMQ EL  LE N+TW LTSLPPGK+ IGC+WVYK+K   DGT
Sbjct: 627  DIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPPGKKPIGCRWVYKIKXHSDGT 686

Query: 2197 VERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHG 2376
            +ER+KARLVAKG+ Q  G+DY D+FSP AK++ VR ++ALA  + W L QLD        
Sbjct: 687  IERFKARLVAKGYTQLEGIDYHDTFSPTAKMIXVRCLLALAAAQNWSLHQLDK------- 739

Query: 2377 YLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHC 2556
                  +M PP    +     VCHL +SLYGLKQ SRQW AKF   +Q  GF QS  D+ 
Sbjct: 740  ------FMSPPPSLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAIQAVGFIQSKADYS 793

Query: 2557 LFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARN 2736
            LF  +               +I+G +++ I ALK++L   F IKDLG  +YFLG+E++R+
Sbjct: 794  LFTCRKGKSFTALLIYVDDILITGNDVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRS 853

Query: 2737 TDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLY 2916
              G  ++QRKY L+IL D G L  K    P+    KL +  G+ L  P ++RRL+GRL+Y
Sbjct: 854  KKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKL-SDSGELLKGPSQYRRLVGRLIY 912

Query: 2917 LNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCD 3096
            L +TRPD+TYSV  LS+F+++P   H +AA+ +LRYLK SP  GLF+ + + L L A+ D
Sbjct: 913  LTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSD 972

Query: 3097 ADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYL 3276
             DWA C  +R+S TG+C+FLGS L+SW+TK+Q TVS SS EAEYRA+    CE+ WL  L
Sbjct: 973  XDWAGCPISRRSXTGYCVFLGSSLISWRTKRQKTVSLSSXEAEYRAMAGTCCELSWLRSL 1032

Query: 3277 CADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSS 3456
              DL +  P P  L+CDN AA+HI  NPVFHERT+H+E+DCH +R+  + G +   H++S
Sbjct: 1033 LKDLRILHPKPALLYCDNTAALHIAVNPVFHERTRHIEMDCHFIRDKIQDGSVVTKHIAS 1092

Query: 3457 RLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 3555
              Q AD FTK LG+  F  +  KLG+ D+H+PT
Sbjct: 1093 TDQXADVFTKPLGKETFSTMIHKLGVLDIHSPT 1125


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  882 bits (2278), Expect = 0.0
 Identities = 491/1195 (41%), Positives = 679/1195 (56%), Gaps = 29/1195 (2%)
 Frame = +1

Query: 49   EEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGNHDQHK 228
            + K K+ C HC  TGH    C+K+HGYP  FK  K++++   +    S        D   
Sbjct: 303  QPKPKVQCSHCGYTGHNADTCYKIHGYPVGFKH-KDKKTVTPSEKPKSVVANLALTDGKV 361

Query: 229  EVPQ-------LDITALVQQEISKALASKLQQGTGGSEYPMNFAHF--------TDFAGT 363
             V Q       +++   + +   + + +           P+  A F        + F G 
Sbjct: 362  SVTQGIGPDGIVELVGSMSKSQIQDVIAYFSTQLHNPAKPITVASFASTNNDNGSTFTGI 421

Query: 364  ILPFSSQYALATLENLKP----DSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGS 531
                S+   L +L + K     ++WI+D+GA+ H+     L  +L    S+  V  P GS
Sbjct: 422  SFSPSTLRLLCSLTSSKKVLSLNTWIIDSGATHHVSYDRNLFESLSDGLSN-EVTLPTGS 480

Query: 532  TKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTE 711
               +   G + LNS LTL +VL +P F+ NLLS+SQ T+    K  F    C+IQD   E
Sbjct: 481  NVKIAGIGVIKLNSNLTLKNVLYIPEFRLNLLSVSQQTKDMKCKIYFDEDCCVIQDPIKE 540

Query: 712  EVKAVGEAVGSLYIFKDGXXXXXXXXLGIKDTES--CNS--SFLLWHRRLGHASFPVLKH 879
            +    G  +G LY+            +    TE   CN+     LWH RLGH S+     
Sbjct: 541  QKIGRGNQIGGLYVLDTSSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHPSYEKNDV 600

Query: 880  LDFFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTG 1059
            L    GL       L  C IC K+KQ  L F S    S   F+L+HID WGP+   +  G
Sbjct: 601  LHDVLGLPKRNKEDLVHCSICQKAKQKHLSFPSKNNMSENKFDLIHIDTWGPFATPTTEG 660

Query: 1060 TPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKE 1239
              +FLTIVDD+SRATWVYLM  K  V  +   FLK++ETQ+  +VK  RSDN  E     
Sbjct: 661  YKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDNAPEL---R 717

Query: 1240 CQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAY 1419
             + L+ + GII   +C  TPQQN +VERKH+H+LNVARALMF++++P +FW   +L A +
Sbjct: 718  FEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLEFWGDCILSAVF 777

Query: 1420 LINRLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGY 1599
            LINRLP+ LL  K+PFELLH   P Y++L+ FGCL Y + +   + KFA RA  CVFLGY
Sbjct: 778  LINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLGY 837

Query: 1600 ITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXS 1779
             +G KGY+L DL+ +++  SR VVF+E  FPF    +                       
Sbjct: 838  PSGYKGYKLLDLETNTIHISRHVVFYETVFPFTDKTI-------IPRDVFDLVDPVHENI 890

Query: 1780 SAPISQPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSF 1959
              P S  ES P   S R S+PP +L D+  N+V   T              D      ++
Sbjct: 891  ENPPSTSESAPKVSSKRESRPPGYLQDYFCNAVPDVTK-------------DVRYPLNAY 937

Query: 1960 NHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPG 2139
             + + L   +TA++  ++   EP +++QA K  +W+DAM+ E+ ALE  NTW + SLP G
Sbjct: 938  INYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWSVCSLPQG 997

Query: 2140 KRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALA 2319
            K+ IGCKWV+KVK+  DG++ER+KARLVAKG+ Q  G+DY D+FSPVAK+ TV+ ++++A
Sbjct: 998  KKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDTFSPVAKMTTVKTLLSVA 1057

Query: 2320 TIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPG-----EVCHLQRSLYGLKQVS 2484
             IK W L QLD++NAFL+G L E+IYM  P GYS  + G      V  LQ+SLYGLKQ S
Sbjct: 1058 AIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMKQGGVLPQNPVLKLQKSLYGLKQAS 1117

Query: 2485 RQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRY 2664
            RQW  KF   L++ GF +S  DH LF R +              +I+G N   I+ LK+ 
Sbjct: 1118 RQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIALLVYVDDIVIAGNNDENIEELKKD 1177

Query: 2665 LDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLK 2844
            L   F ++DLG  +YFLG+EIAR  +G  + QRKY +++L D G+L C+ +  P+ P LK
Sbjct: 1178 LAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYTMELLEDTGLLGCRPSTIPMEPSLK 1237

Query: 2845 LRAKEGDPLVD-PERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLR 3021
            L     + ++D PE +RRL+G+L+YL +TRPD+TY++ +L QF +SP  SH  AA  ++ 
Sbjct: 1238 LSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYAINRLCQFSSSPKNSHLKAAQKVVH 1297

Query: 3022 YLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTV 3201
            YLKG+  +GLFYS+ S LCL+AY DADW SCVD+R+S +G C+FLG  L+SWK+KKQ   
Sbjct: 1298 YLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRRSTSGICMFLGDSLISWKSKKQNMA 1357

Query: 3202 SRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTK 3381
            S SSAE+EYRA+  G  EI WL  L A+  +    PV L+CD+ AAIHI  N VFHERTK
Sbjct: 1358 SSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTKPVPLFCDSTAAIHIANNAVFHERTK 1417

Query: 3382 HLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLH 3546
            H+E DCH+ R+  + G L   HV +  QLAD  TK L    F  L  K+ L  ++
Sbjct: 1418 HIENDCHITRDRIEQGMLKTMHVDTTSQLADVLTKPLFPTLFNSLIGKMSLLSIY 1472



 Score =  150 bits (380), Expect = 1e-32
 Identities = 79/235 (33%), Positives = 135/235 (57%), Gaps = 5/235 (2%)
 Frame = +1

Query: 3841 NRRNNLGPVLNTGTTESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAK 4020
            N+R ++ P      +++ Y   P  L + D PG +LVS  L G N+ SW+ +M ++L AK
Sbjct: 43   NKRPSMYPFPQFDFSDAHYS--PFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAK 100

Query: 4021 TKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIA 4200
             K+ F++G +  P E  P +  W + + MV SWILNS++K +  + +  + A ++W D+ 
Sbjct: 101  NKIAFVDGTLPRPPESDPSFRVWSRCNSMVKSWILNSVTKQIYKSILRFNDAAEIWKDLD 160

Query: 4201 KRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDEL---ACIMPLPACES--DT 4365
             RF   N P  YQL + I ++ QG MS+ +Y+T LK LWD+L   +C+     C     T
Sbjct: 161  TRFHITNLPRSYQLTQQIWSLQQGTMSLSDYYTALKTLWDDLDGASCVSTCKNCTCCIAT 220

Query: 4366 RKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRN 4530
              +I+    + K+++FL GL+ESY  +R+Q+++   +P + + Y++  +   QRN
Sbjct: 221  ASMIE----HSKIVKFLSGLNESYSTIRSQIIMKKTIPDLAEIYNLLDQDHSQRN 271


>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
          Length = 1178

 Score =  870 bits (2249), Expect = 0.0
 Identities = 465/1056 (44%), Positives = 634/1056 (60%), Gaps = 11/1056 (1%)
 Frame = +1

Query: 421  SWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLL 600
            SWI+DTGA+ H+      + + + +     V  P+G + V T SG V L++ +TL +VL 
Sbjct: 137  SWIIDTGATHHVTGDLSWLFDTIALFE-CPVGLPNGESVVATQSGSVRLSNNITLQNVLY 195

Query: 601  VPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXX 780
            VP    NLLS+SQLT   +    F    C IQD  T E+   G     LY F  G     
Sbjct: 196  VPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQD-HTRELIGTGVRRDGLYYF-GGAEGDS 253

Query: 781  XXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQH 960
               + + +  S   +  LWH+R+GH S  V+K L     L G  +    +CEIC ++K  
Sbjct: 254  VQHVSVHNAAS---TLELWHKRMGHPSEKVVKLLPPVSNLKGSLNK---ACEICFRAKHX 307

Query: 961  RLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVP 1140
            R  F  S   ++R FE +H D+WG Y H S  G  +FLTIVDDFSRA W+YL+  KT+V 
Sbjct: 308  RDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVF 367

Query: 1141 TLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVE 1320
             +   F+ +++ QF   VKV +SDNGTEF  K   + F + GI+ Q +CV TPQQNG VE
Sbjct: 368  RMFMSFIAMVDRQFSQTVKVVQSDNGTEF--KCLLDYFSATGILFQTSCVGTPQQNGRVE 425

Query: 1321 RKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYS 1500
            RKH+H+LNV RAL FQ++LP  FW  SVL AA+LINR PS LLH KTPFE+L G  P+Y+
Sbjct: 426  RKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYA 485

Query: 1501 NLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFE 1680
             +  FGCLS+A +      KFA+R+ KCVFLGY  G+KG++L+DLD   L  SRDV FFE
Sbjct: 486  AIHTFGCLSFAHDXKSKGDKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFE 545

Query: 1681 DSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPI-----------SQPESHPLRRSS 1827
            D FPF + P   N                      P            S  +S P+ +  
Sbjct: 546  DVFPFGN-PGAVNIIPENIVPTASSAPLSPGPEVVPTVGLDSLGLDNSSNGQSAPMGKGM 604

Query: 1828 RISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLAN 2007
            R   P   L DF+T++V + +P  +      P    + +A   + +       Y  FLA 
Sbjct: 605  RDKFPSVLLRDFVTHTVVAESPSPATPXPQHPSGTPYPIA--HYINCDNFSVHYRKFLAT 662

Query: 2008 LSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRP 2187
            + +  +P SF +A K   W  +M  E+ ALE+N TW L  LP GKRA+G +WVY+ K   
Sbjct: 663  IISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFS 722

Query: 2188 DGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAF 2367
            +G +ER K+RLV  G HQE G+DY ++FSPVAK+ TVR  +A+A  K W L Q+DV+NAF
Sbjct: 723  NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAF 782

Query: 2368 LHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAH 2547
            LHG L+E++YM  P G+ ++ P  VC L++SLYGLKQ  R W +K    L+ +GF QS  
Sbjct: 783  LHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYS 842

Query: 2548 DHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEI 2727
            D+ LF   T              IISG + + +   K YL D F +KDLG  +YFLG+E+
Sbjct: 843  DYSLFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEV 902

Query: 2728 ARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGR 2907
            AR++ G  L QRKY LDI+ +AG+L  K    P+    +L    G+ L +PE +RRL+GR
Sbjct: 903  ARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLXLANGELLSNPESYRRLVGR 962

Query: 2908 LLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEA 3087
            L+YL +TRPD+ YSV  LSQF+  P   HW+AA+ ++RYLKG+P  G+   A S L L+ 
Sbjct: 963  LIYLAVTRPDLAYSVHILSQFMXEPRIEHWEAALRVVRYLKGTPGQGILLRADSDLSLQG 1022

Query: 3088 YCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWL 3267
            +CD+DWA+C  TR+SL+G+ +FLG   +SWKTKKQ TVSRSSAEAEYRA+ +  CE++WL
Sbjct: 1023 WCDSDWAACPVTRRSLSGWLVFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWL 1082

Query: 3268 SYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGH 3447
              L   LG+  P  + L+CD+Q+A+H+ +NPVFHERTKH+E+DCH VR+    G +   +
Sbjct: 1083 KGLLLSLGVHHPKAIKLFCDSQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSY 1142

Query: 3448 VSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 3555
            V +  QLAD FTK+LG+  F  L +KLG+F+ H PT
Sbjct: 1143 VPTVTQLADIFTKALGKKQFDYLLAKLGIFEPHAPT 1178


>gb|PRQ29719.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1080

 Score =  866 bits (2237), Expect = 0.0
 Identities = 481/1071 (44%), Positives = 635/1071 (59%), Gaps = 17/1071 (1%)
 Frame = +1

Query: 388  ALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCL 567
            A A  ++ K  +WILD+GAS H+  +S  +++  P+ +  +V  PDG+T  V+H G V  
Sbjct: 62   AFALSQDNKDVTWILDSGASDHIVCNSAFLTSFQPVHNR-TVKLPDGTTLHVSHIGTVSF 120

Query: 568  NSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSL 747
            +S   LH+VL VP F  NL+SI++L   S    +F    C IQDL++  +   G     L
Sbjct: 121  SSHFVLHNVLCVPLFYLNLISINKLAFDSVYITIFLKQVCFIQDLQSGRMIGTGTESEGL 180

Query: 748  YIFKDGXXXXXXXXLGIKDTESCN----SSFLLWHRRLGHASFPVLKHLDFFKGLSGDTD 915
            Y             L +    +CN     +  LWH+RLGH S  V     F +  S +  
Sbjct: 181  YC------------LNLPKKGTCNVVNTKTHDLWHQRLGHPSSKVSLLFPFLQNKSCNAS 228

Query: 916  HTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFS 1095
                 C IC  +KQ R PF  S   S+  F+L+H+D+WG Y+  SL+G  +FLTIVDD S
Sbjct: 229  ----PCSICPLAKQTRRPFPLSVSSSNSCFDLIHVDIWGGYHVPSLSGAQYFLTIVDDHS 284

Query: 1096 RATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIH 1275
            R+TWVYLM HK++   L+  F+ L+E QF   VK+ RSDNG EF   +C   + S GI+H
Sbjct: 285  RSTWVYLMHHKSETQALLIHFVNLVENQFGKRVKIVRSDNGPEF---KCTQFYSSKGILH 341

Query: 1276 QKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHW 1455
            Q +C+ TPQQNG+ ERKHRHLLN+ARAL+FQS+LP  FW  ++L AAYLINR P+ +L  
Sbjct: 342  QTSCINTPQQNGVAERKHRHLLNIARALLFQSNLPKPFWGDAILTAAYLINRTPTPILQG 401

Query: 1456 KTPFELLHGASPTYSNLRPFGCLSYAANTHPHK-SKFAARAYKCVFLGYITGQKGYRLYD 1632
            KTPFE L   SP YS+LR FGC  + + THP + SKF  R+ +C+FLGY  GQKGY++Y 
Sbjct: 402  KTPFETLFHKSPNYSHLRVFGCRCFVS-THPLRPSKFDPRSTECIFLGYPHGQKGYKVYS 460

Query: 1633 LDNHSLLTSRDVVFFEDSFPF-----ASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQ 1797
            L +  +L SRDV+FFE  FP+      S P  S+                   SS P  Q
Sbjct: 461  LKDKKMLVSRDVIFFETEFPYQSKLSTSSPSVSSPTPPQYHVDISLSQDAIPHSSLP--Q 518

Query: 1798 PESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSI- 1974
            P     RRSSR ++ P  L DF   +       A PSH+A P S    +      HS   
Sbjct: 519  P-----RRSSRPTRTPTTLQDFHIEA-------ALPSHTA-PSSSTSEVTHLGTPHSIAH 565

Query: 1975 ------LGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPP 2136
                  L  T+ AF  N++  +EP SFSQA     W +AM +E+ AL++N TW L  LPP
Sbjct: 566  VLSYDRLSPTHKAFTVNITLEKEPRSFSQAVLEPRWREAMDKEIQALQENKTWSLVPLPP 625

Query: 2137 GKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIAL 2316
             K+ IGCKWVYK+K  PDGTVERYKARLVAKG+ Q  G+DY ++F+PVAKL TVR++++L
Sbjct: 626  DKKPIGCKWVYKIKHNPDGTVERYKARLVAKGYSQVAGIDYRETFAPVAKLTTVRVLLSL 685

Query: 2317 ATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWN 2496
            A ++GW L QLDVNNAFL+G L ED+YM  P G+ +     VC L +S+YGLKQ SRQW 
Sbjct: 686  AALQGWHLHQLDVNNAFLNGDLYEDVYMKLPPGFGRKGENRVCKLHKSVYGLKQASRQWF 745

Query: 2497 AKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDL 2676
             K    L+  GF QS  D+ LF+R T              I++G NL +I   K +L   
Sbjct: 746  LKLSGALKAAGFNQSWSDYSLFVRHTQGRFTTLLVYVDDVILAGNNLQDIMETKHFLASH 805

Query: 2677 FTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAK 2856
            F +KD+G  RYFLG+E+AR+  G VL QRKY L++L DAG L  K +  P+   L L   
Sbjct: 806  FKLKDMGQLRYFLGIEVARSKQGIVLCQRKYALEVLEDAGFLGAKPSRFPIDQNLVLTQG 865

Query: 2857 EGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGS 3036
            EG  L D  ++RRL+GRL+YL +TRPD+ Y+                            +
Sbjct: 866  EGVVLKDASQYRRLVGRLIYLTVTRPDLVYA----------------------------T 897

Query: 3037 PSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSA 3216
            P  G+   +   L ++AYCDADWA C DTR+S TG+CIFLG+  +SWKTKKQ TVSRSSA
Sbjct: 898  PGQGILLPSTGQLEIKAYCDADWARCKDTRRSTTGYCIFLGNAPISWKTKKQGTVSRSSA 957

Query: 3217 EAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEID 3396
            EAEYR++ +  CEI WL  L  DL +     V L+CDNQA+IHI  NPVFHERTKH+EID
Sbjct: 958  EAEYRSMATTCCEITWLRSLLRDLNVQHAHAVKLFCDNQASIHIASNPVFHERTKHIEID 1017

Query: 3397 CHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHN 3549
            CH+VR   + G +   H+ ++ Q AD FTK LG   F  L SKLG+ ++H+
Sbjct: 1018 CHVVREKVQRGLVKTKHIRTKEQPADLFTKRLGSKQFSALLSKLGVINIHS 1068


>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  858 bits (2218), Expect = 0.0
 Identities = 453/1020 (44%), Positives = 628/1020 (61%), Gaps = 16/1020 (1%)
 Frame = +1

Query: 553  GQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGE 732
            G +  +    L DVL +P F +NL+S+S+L +    +  F    C IQD  ++ +K +G 
Sbjct: 1    GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQD--SQSMKMIGA 58

Query: 733  AVGSLYIFK-DGXXXXXXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDF-FKGLSG 906
            A  ++ ++  D           + +  S ++   LWH RLGH +   L+ +   F  +  
Sbjct: 59   AKHNMGLYVLDWKPKVCLYLHSVNNFHSYDND--LWHIRLGHLAHEKLQAMKSNFPFI-- 114

Query: 907  DTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVD 1086
            D     D C +C+ +KQ +LPF  S   +   F+LLH+D+WGP    S+ G  FFLTIVD
Sbjct: 115  DCKKNKDPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFLTIVD 174

Query: 1087 DFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHG 1266
            D SR TWVY M HK++V   +S F+ LIE QF   VK  RSDNG EF  K   N +H  G
Sbjct: 175  DKSRHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLK---NFYHEKG 231

Query: 1267 IIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSAL 1446
            I+HQ +CV TPQQNGIVERKH+H++ VARAL+ QS+LP  FW ++V HA +LINR PS+ 
Sbjct: 232  ILHQTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSF 291

Query: 1447 LHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRL 1626
            L  K P+E+++ A P  + ++ FGCL+YA   H ++ KF  R  +CVFLG+    KG  L
Sbjct: 292  LENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSIL 351

Query: 1627 YDLDNHSLLTSRDVVFFEDSFPFA---------SIPVPSNXXXXXXXXXXXXXXXXXXXS 1779
            YDL++     SR V +FE  FPF          +I +P +                   +
Sbjct: 352  YDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPT 411

Query: 1780 SAPISQPESHP-LRRSSRISKPPAWLSDFITN--SVHSSTPMASPSHSAGPDSGDFSLAP 1950
            S+P+S     P +R+S+R  K P++L D+     + H+S  ++ P +S        +L+P
Sbjct: 412  SSPVSVVPPPPFVRKSTRPRKLPSYLHDYHHTLLTTHNSPTISQPLYSIHNHISYSNLSP 471

Query: 1951 TSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSL 2130
            +             AF  ++S+++EP+S+ +A +   W  A+Q ELTALE+NNTW+LT L
Sbjct: 472  SQ-----------KAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPL 520

Query: 2131 PPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVI 2310
            PP K+ +GCKWV+K+K   DGT+ER+KARLVAKG+ Q   +DYLD+FSPV K+ TVR ++
Sbjct: 521  PPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLL 580

Query: 2311 ALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGY--SKAKPGEVCHLQRSLYGLKQVS 2484
            A+AT K W + QLDVN  FLHG L E++YM PP G   S  +   VC L +SLYGLKQ S
Sbjct: 581  AVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQAS 640

Query: 2485 RQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRY 2664
            RQWNAK    L   GF QS  D+ LF +Q               +++G + +EI+ +K  
Sbjct: 641  RQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSL 700

Query: 2665 LDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLK 2844
            LD  FTIKDLG  +YFLGME+AR++ G  L QRKY LD++ D G+L  K   +P+   +K
Sbjct: 701  LDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVK 760

Query: 2845 LRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRY 3024
            L    G PL DP ++RRL+GRL+YL  TR D+++SV  LSQF++ P   H+ AA+ +L+Y
Sbjct: 761  LHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKY 820

Query: 3025 LKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVS 3204
            +K +P  GLF+ + S L L+ Y D+DWASC DTR+S+TGF  FLG  L+SWK+KKQ TVS
Sbjct: 821  VKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVS 880

Query: 3205 RSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKH 3384
            +SSAEAEYRAL    CE QWLSYL  D GL    P+ L+CDNQ+A+HI  NPVFHERTK+
Sbjct: 881  KSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKN 940

Query: 3385 LEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 3564
            +E+DCH+VR   + G +HL  +S+  QLAD FTK+L    F  +  KLG+FD+H+   GG
Sbjct: 941  IELDCHIVREKLQVGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLGMFDIHSSLRGG 1000


>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1097

 Score =  855 bits (2208), Expect = 0.0
 Identities = 476/1132 (42%), Positives = 656/1132 (57%), Gaps = 26/1132 (2%)
 Frame = +1

Query: 70   CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGN----------HD 219
            C +C+  GH    C+K HGYP  FK          A++ ++E  + GN            
Sbjct: 1    CTYCNKLGHTIETCYKKHGYPPHFKGGS-------AHNCYNEECDEGNPVLNESAGDISK 53

Query: 220  QHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALAT 399
              K    L  TA    E  KAL   L Q    S +  N     +   T  P  S      
Sbjct: 54   GEKGENSLGFTA----EQHKALLGMLTQQQ--SHHTANHITTYELPSTSDP-QSGIVYTV 106

Query: 400  LENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTL 579
              N+  + WILD+GA+ H+C S KL   L  I   V +  PDG        G +  +   
Sbjct: 107  SNNMNNNIWILDSGATDHICRSIKLFQCLRRIKP-VKIHLPDGKCVTTNLCGSIFFSEDF 165

Query: 580  TLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFK 759
             L DVL +P F +NL+S+S+L +    +  F    C IQD  ++ +K +G A  ++ ++ 
Sbjct: 166  FLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQD--SQSMKMIGAAKHNMGLYV 223

Query: 760  -DGXXXXXXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDF-FKGLSGDTDHTLDSC 933
             D           I +  S ++   LWH RLGH +   L+ +   F  +  D     D C
Sbjct: 224  LDWKPKVCLYLHSINNFHSYDND--LWHIRLGHLAHEKLQAMKSNFPFI--DCKKNKDPC 279

Query: 934  EICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVY 1113
             +C+ +KQ +LPF  S   +   F+LLH+D+WGP    S+ G  FFLTIVDD SR TWVY
Sbjct: 280  NVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKSRHTWVY 339

Query: 1114 LMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVY 1293
             M HK++V   +S F+ LIE QF   VK  RSDNG EF  K   N +H  GI+HQ +CV 
Sbjct: 340  FMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLK---NFYHEKGILHQTSCVE 396

Query: 1294 TPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFEL 1473
            TPQQNGIVERKH+H++ VARAL+ QS+LP  FW ++V HA +LINR PS+ L  K P+E+
Sbjct: 397  TPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEI 456

Query: 1474 LHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLL 1653
            ++ A P  + ++ FGCL+YA   H ++ KF  R  +CVFLG+    KG  LYDL++    
Sbjct: 457  IYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETF 516

Query: 1654 TSRDVVFFEDSFPFA---------SIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPES 1806
             SR V +FE  FPF          +I +P +                   +S+P+S    
Sbjct: 517  LSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPP 576

Query: 1807 HP-LRRSSRISKPPAWLSDFITN--SVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSIL 1977
             P +++S+R  K P++L D+     + H+S  ++ P +S        +L+P+        
Sbjct: 577  PPFVQKSTRPRKLPSYLHDYHHTLLTTHNSPTISQPLYSIHNHISYSNLSPSQ------- 629

Query: 1978 GATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGC 2157
                 AF  ++S+++EP+S+ +A +   W  A+Q ELTALE+NNTW+LT LPP K+ +GC
Sbjct: 630  ----KAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGC 685

Query: 2158 KWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWP 2337
            KWV+K+K   DGT+ER+KARLVAKG+ Q  G+DYLD+FSPV K+ TVR ++A+AT K W 
Sbjct: 686  KWVFKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWH 745

Query: 2338 LFQLDVNNAFLHGYLDEDIYMVPPDGY--SKAKPGEVCHLQRSLYGLKQVSRQWNAKFCL 2511
            + QLDVN  FLHG L E++YM PP G   S  +   VC L +SLYGLKQ SRQWNAK   
Sbjct: 746  IHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTS 805

Query: 2512 KLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKD 2691
             L   GF QS  D+ LF +Q               +++G + +EI+ +K  LD  FTIKD
Sbjct: 806  VLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKD 865

Query: 2692 LGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPL 2871
            LG  +YFLGME+AR++ G  L QRKY LD++ D G+L  K   +P+   +KL    G PL
Sbjct: 866  LGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPL 925

Query: 2872 VDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGL 3051
             DP ++RRL+GRL+YL  TR D+++SV  LSQF++ P   H+ AA+ +L+Y+K +P  GL
Sbjct: 926  TDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGL 985

Query: 3052 FYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYR 3231
            F+ + S L L+ Y D+DWASC DTR+S+TGF  FLG  L+SWK+KKQ TVS+SSAEAEYR
Sbjct: 986  FFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYR 1045

Query: 3232 ALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHL 3387
            AL    CE QW+SYL  D GL    P+ L+CDNQ+A+HI  NPVFHERTKH+
Sbjct: 1046 ALAQSTCEAQWISYLLHDFGLHNFHPIVLFCDNQSALHIASNPVFHERTKHI 1097


>gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygrometricum]
          Length = 1012

 Score =  850 bits (2196), Expect = 0.0
 Identities = 444/973 (45%), Positives = 614/973 (63%), Gaps = 13/973 (1%)
 Frame = +1

Query: 670  FFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXXLGIKDTESCNSSFL---LWH 840
            F    C IQD +  +   +G+ +G+LY+                 +  CN S     LWH
Sbjct: 66   FMSDSCHIQDFKRTKTIGMGKRLGNLYVLIKSSIT--------SPSYVCNVSVPKPELWH 117

Query: 841  RRLGHAS---FPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFEL 1011
             R+GH S      LK++  F      TD  ++ C +CH SKQ RLPF S    ++ SFEL
Sbjct: 118  CRMGHPSPNKLSSLKNILHFDS----TDVDINLCHVCHMSKQKRLPFESHNKTAAHSFEL 173

Query: 1012 LHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAI 1191
            LHIDVWGP++ +S+ G  FFLTIVDD +R TWVY++  K++V ++   F ++++TQF A 
Sbjct: 174  LHIDVWGPFSKYSVDGYRFFLTIVDDHTRFTWVYMLRSKSEVSSIFPMFCRMVDTQFGAK 233

Query: 1192 VKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQS 1371
            +K  RSDN  +       NLF   GI+H  +CV  PQQN IVERKH+H+LNVARALMFQS
Sbjct: 234  IKSVRSDNAPDLGFI---NLFSELGIVHTYSCVERPQQNSIVERKHQHILNVARALMFQS 290

Query: 1372 SLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPH 1551
            S+P  +W   ++ + YLINR PS++LH KTPFELLHG  P YS+L+ FGCL YA+     
Sbjct: 291  SVPIDYWSDCIVTSMYLINRTPSSILHHKTPFELLHGKPPAYSHLKIFGCLCYASTLMSS 350

Query: 1552 KSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXX 1731
            + KF+ RA KCVFLGY  G +GY+L +LD + +L S DV+F E  FPF +    S+    
Sbjct: 351  RHKFSPRAIKCVFLGYPPGYRGYKLLNLDTNEILISCDVIFHEHEFPFQNT-YNSDSQPS 409

Query: 1732 XXXXXXXXXXXXXXXSSAPISQP---ESHPLRRSSRISKPPAWLSDFITNSVHSSTPMAS 1902
                           +S  I  P   +S    RS RI +PP  L ++    +HSS+P  S
Sbjct: 410  YIFSDNLLPVHSQLNNSHTIPDPISSKSKQQSRSQRILQPPHHLQNYHCY-MHSSSPSTS 468

Query: 1903 PSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQR 2082
             SH              +F + S L   +   + N+S++ EP++FSQA    +W  AM  
Sbjct: 469  TSHPL-----------CNFVNYSKLSPLHRNLVNNISSIVEPTTFSQAVAIPEWKQAMSD 517

Query: 2083 ELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYL 2262
            EL ALE N+TW + SLPPGK  +GC+WVYK K   DG+++RYKARLVAKG+ Q+ G+DYL
Sbjct: 518  ELKALELNHTWSIVSLPPGKSVVGCRWVYKAKFAADGSLQRYKARLVAKGYTQQEGLDYL 577

Query: 2263 DSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKA----K 2430
            ++FSPVAK+VTVR ++ALA  +GW L QL V+NAFLHG LDE++YM  P GYS       
Sbjct: 578  ETFSPVAKMVTVRTLLALAAARGWSLIQLHVHNAFLHGELDEEVYMSLPPGYSSEGGPLP 637

Query: 2431 PGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXX 2610
            P  VC L +SLYGLKQ SRQW AKF   L   GF+QS  D+ LF++              
Sbjct: 638  PQSVCKLHKSLYGLKQASRQWFAKFSSTLLSVGFSQSHADNSLFIKVRDNVFLVLLVYVD 697

Query: 2611 XXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHD 2790
              +I+  N      LK +L++ F +KDLG  +YFLG+E+AR++ G  + QR Y ++ L +
Sbjct: 698  DIVIATNNEEAASELKSFLNNKFKLKDLGKLKYFLGIEVARSSRGISICQRNYAMNFLTE 757

Query: 2791 AGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQF 2970
            AG++ C+   TP+   +K+  ++G+ L DP  +RRLIGRLLYL +TRPD+ ++V +LSQ+
Sbjct: 758  AGLMGCRPRSTPMEANVKITQEDGEILPDPSSYRRLIGRLLYLTVTRPDLAFAVNKLSQY 817

Query: 2971 VNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCI 3150
            V+ P   H +AA+++LRY+KG+   GL+Y ++S L L+ + DADW +C+DTR+S+TG+C+
Sbjct: 818  VSKPRLPHMEAALNILRYVKGTIGQGLYYGSNSDLRLKFFSDADWGACLDTRRSVTGYCV 877

Query: 3151 FLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDN 3330
            FLG  ++SW+ KKQ TVSRSSAEAEYR++ +  CEI W+  L  DLG+    P TL+CD+
Sbjct: 878  FLGESMISWRAKKQHTVSRSSAEAEYRSMAAATCEILWIRSLLTDLGVKCDGPATLFCDS 937

Query: 3331 QAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFL 3510
            QAAIHI  NPVFHERTKH++IDCH++R   + G + L HVSS  QLAD FTK+L  + F 
Sbjct: 938  QAAIHIASNPVFHERTKHIDIDCHVIREKVQQGIVKLMHVSSVQQLADLFTKALLTSRFR 997

Query: 3511 LLCSKLGLFDLHN 3549
             L SK+G+ ++H+
Sbjct: 998  SLLSKMGIHNIHD 1010


>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
          Length = 1288

 Score =  843 bits (2179), Expect = 0.0
 Identities = 467/1052 (44%), Positives = 633/1052 (60%), Gaps = 8/1052 (0%)
 Frame = +1

Query: 424  WILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLV 603
            WI+D+GA+ H+C    L  + + + + V V  P G T  +   G V L+  + L +VL V
Sbjct: 281  WIIDSGATHHVCNDISLFDSSIDVQN-VRVTLPTGITVPIDRVGSVILSKDVKLLNVLFV 339

Query: 604  PSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXX 783
            P+F+YNLLS+S  T + ++  +F P  C+IQ+    ++   G   G LY           
Sbjct: 340  PTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSRKGQLYQLDFDSFVADK 399

Query: 784  XXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHR 963
              +      + N    LWH RLGH SF  LK L     L  D+   L  C +C  +KQ  
Sbjct: 400  AFVAASRIPTSNI-LSLWHSRLGHPSFSRLKGLQSV--LDFDSSFDLTPCNVCPLAKQRC 456

Query: 964  LPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPT 1143
            LP+IS     S +F+LLH+D+WGP++  S+ G  FFLTIVDD+SR TWVY++ +K++V  
Sbjct: 457  LPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQK 516

Query: 1144 LISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVER 1323
             I  F   ++ QF   VK  RSDN  E       N +HS G+IH ++CV TPQQN +VER
Sbjct: 517  YIPDFFAFVKKQFGKEVKAIRSDNAPELF---LSNFYHSLGVIHYRSCVETPQQNSVVER 573

Query: 1324 KHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSN 1503
            KH+H+LNVARAL+F SSLP  +W   +L A YLINR PS  L+ KTPFE+LH   P YS+
Sbjct: 574  KHQHILNVARALLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSH 633

Query: 1504 LRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFED 1683
            LR FGCL Y +    +++KF+ RA   VFLGY  G KGY+L D++  S+  SR+      
Sbjct: 634  LRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRN------ 687

Query: 1684 SFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAP--ISQP--ESHPLRRSSRISKPPAW 1851
            + P +S P  S+                   S  P  +SQP  +  P  R +R+SK P++
Sbjct: 688  TNPCSS-PDISSDLFHDRVLPCIAADNDQSSSVLPRVVSQPPLQVAPSSRPTRVSKQPSY 746

Query: 1852 LSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPS 2031
            L D+  + ++S   + +  HS       F     S++    L  +Y  F  ++S + EPS
Sbjct: 747  LKDYHCSLINSVAHVET--HSTSHPIQHF----LSYDK---LSPSYKLFSLSVSIISEPS 797

Query: 2032 SFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYK 2211
            SF++A +  +W  AM  EL ALE+N T  + SLP GK  +GCKWVYK K + DGT+ERYK
Sbjct: 798  SFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYK 857

Query: 2212 ARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDED 2391
            ARLVAKG+ Q  G+DY+D+FSPVAKLVTV+L++A+A +KGW L QLDVNNAFLHG L+E+
Sbjct: 858  ARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEE 917

Query: 2392 IYMVPPDGYSKA----KPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHCL 2559
            +YM  P GY++         VC L +SLYGLKQ SRQW +KF   +   GF+QS  DH L
Sbjct: 918  VYMKLPPGYNRKGESLPSNXVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSL 977

Query: 2560 FLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNT 2739
            F++                II+  N   I  LK  L+ LF +KDLG  +YFLG+EIA+++
Sbjct: 978  FIKNVDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAKSS 1037

Query: 2740 DGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYL 2919
             G  ++QRKYVLD+L D G L CKAA TP+   +KL   EG  L D   +RRL       
Sbjct: 1038 TGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRL------- 1090

Query: 2920 NLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDA 3099
                          SQF++ P   H  AA  +LRYLKG+P +GLF+ ++S L L AY D+
Sbjct: 1091 --------------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDS 1136

Query: 3100 DWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLC 3279
            DWA C D+R+S+TGFC+FLG+ LVSWK+KKQ  VSRSSAEAEYRA+ +  CEI WL  L 
Sbjct: 1137 DWARCPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALL 1196

Query: 3280 ADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSR 3459
             D G+    P  L+CDNQ+A+H+ +NPVFHERTKH+EIDCHLVR+  +SG L    VS+ 
Sbjct: 1197 KDFGIDHSAPALLFCDNQSALHMAENPVFHERTKHIEIDCHLVRDKVQSGVLKPMFVSTE 1256

Query: 3460 LQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 3555
             QLAD  TK+L  ++F LL  K+GL ++ +P+
Sbjct: 1257 HQLADXLTKALHPSSFKLLIGKMGLKNIFSPS 1288



 Score =  135 bits (341), Expect = 3e-28
 Identities = 73/226 (32%), Positives = 115/226 (50%)
 Frame = +1

Query: 3850 NNLGPVLNTGTTESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKL 4029
            N  G V N+     E    P  L++ DHPGL+LVS+ LTG NY +WR +ML+AL AK K+
Sbjct: 10   NRXGQV-NSEIVVVEDSSSPYFLHNGDHPGLNLVSNLLTGANYHTWRXAMLMALTAKNKV 68

Query: 4030 GFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRF 4209
            GF++G +  P      Y  W + + M+ SWI+N++S+++ D+ +Y DSA D+W D+  RF
Sbjct: 69   GFVDGTISRPMSHDLIYGAWNRCNSMISSWIINAVSREIADSLLYLDSACDIWRDLNDRF 128

Query: 4210 GDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDTRKLIDERD 4389
                                                           C     ++  +  
Sbjct: 129  NQ--------------------------------------------VCHCGGLRVWTDYQ 144

Query: 4390 MNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQR 4527
                ++QFLMGL++SY Q+R Q+L+MDPLP+++K +S+ ++ E  R
Sbjct: 145  HREYVLQFLMGLNDSYAQIRGQILMMDPLPAINKVFSLVIQEEXHR 190


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  838 bits (2165), Expect = 0.0
 Identities = 473/1174 (40%), Positives = 678/1174 (57%), Gaps = 26/1174 (2%)
 Frame = +1

Query: 46   KEEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIE------- 204
            K++K K IC H   TGH    C+KLHGYP  +K+ K    ++   S  S+  +       
Sbjct: 305  KKDK-KSICSHYGYTGHTSERCYKLHGYPVGWKKGKSFYEKIAQASQSSQAPKPNSAVTA 363

Query: 205  --TGNHDQHKEVPQLDITALVQQEISKALA---SKLQQGTGG-SEYPMNFAHFTDFAGTI 366
              TGN        +  I  + + +I   +A   S+LQ  +   +  PM+ +H  D +G  
Sbjct: 364  QVTGNSQNTPAGLESLIGNMSKDQIQNLIALFSSQLQPASPVLNTAPMSTSHNNDPSGIT 423

Query: 367  LPFSSQYALATLE----NLKPDSWILDTGASRHMCASSKLMSNL-VPISSHVSVCFPDGS 531
               S+   +  L      +   +WI+D+GA+ H+C    +  NL   +  HV++  P G+
Sbjct: 424  FSSSTFSFIGILTVSETEMTHGTWIVDSGATHHVCHVKDMFLNLDTSVQHHVNL--PTGT 481

Query: 532  TKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTE 711
            T  V   G + +N+ L L +VL +P F+ NLLS+S LT     + +F P+ C++ DL   
Sbjct: 482  TIRVGGVGNIAVNADLILKNVLYIPEFRLNLLSVSALTTDIGARVVFDPTCCVVHDLTK- 540

Query: 712  EVKAVGEAVGSLYIFKDGXXXXXXXXLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFF 891
                 G  +GS  +            LGI  T++                          
Sbjct: 541  -----GSTIGSDLL---------TDVLGIFKTKN-------------------------- 560

Query: 892  KGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFF 1071
            KGL          C+IC ++KQ +L + S        F+LLHIDVWGP++  +  G  +F
Sbjct: 561  KGLL--------HCDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYF 612

Query: 1072 LTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNL 1251
            LTIVDD +R TWVYLM +K+ V T+   F+ ++ETQ+   VK  RSDN  E   +E   L
Sbjct: 613  LTIVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEE---L 669

Query: 1252 FHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINR 1431
            +   GI+   +C  TP+QN +VERKH+H+LNVARAL+FQS +P  +W   +L A ++INR
Sbjct: 670  YRRKGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINR 729

Query: 1432 LPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQ 1611
             PS ++  KT FE+L    P Y++L+ FGCL YA+ +   + KF  RA  C FLGY +G 
Sbjct: 730  TPSPVISNKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGY 789

Query: 1612 KGYRLYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPI 1791
            KGY+L DL++H++  SR+VVF+ED FPF + P  +                       P+
Sbjct: 790  KGYKLLDLESHTIFISRNVVFYEDLFPFKTKPAENEESSVFFPHIYVDRNDSHPSQPLPV 849

Query: 1792 SQPESHPL---RRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFN 1962
             +  +  +   +++SR+S+PPA+L D+  NSV SST              D  ++    +
Sbjct: 850  QETSASNVPAEKQNSRVSRPPAYLKDYHCNSVTSST--------------DHPISEV-LS 894

Query: 1963 HSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGK 2142
            +SS L   Y  F+  ++ + EP +++QA +  +W DAM  E+TALE N TWV+ SLP GK
Sbjct: 895  YSS-LSDPYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGK 953

Query: 2143 RAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALAT 2322
            +A+GCKWVYK+K+  DG++ERYKARLVAKG+ Q  G+DY+D+FSPVAKL TV+L+IA+A 
Sbjct: 954  KAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVKLLIAVAA 1013

Query: 2323 IKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAK-----PGEVCHLQRSLYGLKQVSR 2487
             KGW L QLD++NAFL+G LDE+IYM  P GYS  +     P  VC L++SLYGLKQ SR
Sbjct: 1014 AKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLYGLKQASR 1073

Query: 2488 QWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYL 2667
            QW  KF   L+  GFTQS+ DH LF R++              II+ +   E + L+  L
Sbjct: 1074 QWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETELLRDAL 1133

Query: 2668 DDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKL 2847
                 ++DLG  RYFLG+EIARNTDG  + QRKY L++L + G+L CK++  P+ P  KL
Sbjct: 1134 QRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPMEPNQKL 1193

Query: 2848 RAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYL 3027
              ++G+ + D E +R+L+G+L+YL  TRPD+TY+V +L QF ++P   H  A   ++ YL
Sbjct: 1194 SQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYKIIYYL 1253

Query: 3028 KGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSR 3207
            KG+   GLFYSA+  L L  + D+D++SC D+RK  TG+C+FLG+ LV+WK+KKQ  +S 
Sbjct: 1254 KGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSKKQEVISM 1313

Query: 3208 SSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHL 3387
            SSAEAEY+A+   V E+ WL +L  DL + +     L+CDN AAIHI  NPVFHERTKH+
Sbjct: 1314 SSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLYCDNTAAIHIANNPVFHERTKHI 1373

Query: 3388 EIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKS 3489
            E D H +R     G +   HV +  QLAD   KS
Sbjct: 1374 ERDYHHIREKIILGLIRTLHVRTENQLADIPYKS 1407



 Score =  147 bits (372), Expect = 8e-32
 Identities = 77/213 (36%), Positives = 129/213 (60%), Gaps = 6/213 (2%)
 Frame = +1

Query: 3907 PLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQ 4086
            PL L+++DHPG+S+VS QL G NY  W  +M IAL AK K+ FI+G    P+E +     
Sbjct: 53   PLFLHNADHPGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLRI 112

Query: 4087 WRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMN 4266
            W + + MV SWILNS+++++  + +  D A  +W+D+  RF   N P  +QL + I ++ 
Sbjct: 113  WSRCNSMVKSWILNSVNREIYGSILSFDDAAQIWNDLHNRFHMTNLPRTFQLVQQIQDLR 172

Query: 4267 QGNMSVVEYFTKLKRLWDEL---ACIMPLPACESDT--RKLIDERDMNR-KLMQFLMGLH 4428
            QG+M++  Y+T LK L D L      +P   C+  T   ++  + ++NR ++++FL GL+
Sbjct: 173  QGSMNLSTYYTTLKTLRDNLDGAEASVPCHCCKKSTCESQIFAKSNVNRGRIIKFLAGLN 232

Query: 4429 ESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQR 4527
            E Y  +R Q+++  PLP + + Y++  + + QR
Sbjct: 233  EKYSIIRGQIIMKKPLPDLAEVYNILDQDDSQR 265


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  823 bits (2127), Expect = 0.0
 Identities = 461/1114 (41%), Positives = 652/1114 (58%), Gaps = 31/1114 (2%)
 Frame = +1

Query: 304  GTGGSEYPM--NFAHFTDFAG--------TILPFSSQYALATLENLKPDSWILDTGASRH 453
            G G SE P   N +H T            +I   ++ + L  L +  P  WI+D+GA+ H
Sbjct: 11   GGGSSETPSRANLSHSTPNQSHDSGLGSRSIFSINTTHTLNNLSHTTP--WIIDSGATDH 68

Query: 454  MCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSI 633
            +  S  L      I   +++  P+GS      SG + L+    +HDVL VP+F +NLLS+
Sbjct: 69   ITTSIDLFFKYSEIKP-LNINLPNGSIVQAHFSGSIQLSPDFVIHDVLFVPNFSFNLLSL 127

Query: 634  SQLTQSSNVKCLFFPSY----CLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXXLGIK 801
             +L  ++  + +F   +    C IQD+ T  +K +G A       K+G            
Sbjct: 128  PKLLLTAPCRVIFSNQFSNILCQIQDMNT--LKMIGSAN-----LKEGLFHLDIGKERRS 180

Query: 802  DTESCNSSFL----LWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLP 969
             T +  ++ +    LWH RLGH S   L  L+  +     + H+ + C++CH +KQ +L 
Sbjct: 181  STNNATATPINNSNLWHFRLGHLSSNRLNVLN--QQFPFISKHSNEVCDVCHFAKQKKLS 238

Query: 970  FISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLI 1149
            +  S    S+ F+L+H+D+WGP++  S+ G  +FLTI+DDFSR TWV L+  K++V T +
Sbjct: 239  YSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKYFLTILDDFSRYTWVVLLKSKSEVKTHV 298

Query: 1150 SQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKH 1329
              F+ L+E Q++  VK  RSDNG EF  ++    F+S GIIHQ +CVYTPQQNG VERKH
Sbjct: 299  HNFINLVENQYETKVKCIRSDNGPEFFLRD---FFNSKGIIHQTSCVYTPQQNGRVERKH 355

Query: 1330 RHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLR 1509
            +H+LNVARALMFQS LPS FW +++ HA +LINR+PS ++  KTPFELL+   P +S L+
Sbjct: 356  QHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVPSPIISHKTPFELLNKIPPDFSMLK 415

Query: 1510 PFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSF 1689
             FGCL YA+ TH  + KF  R+ K +F+G+  G KG+ + D++   +L SR+V+F E SF
Sbjct: 416  VFGCLCYAS-THNQRHKFEPRSRKGIFMGFQNGTKGFVILDINTREILVSRNVIFHETSF 474

Query: 1690 PF-ASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESHPLRRSSRISKPPAWLSDFI 1866
            PF  S P                       +S   + P  +P   +S     PA      
Sbjct: 475  PFHTSAPTSPFITQPSLTISPNPDILTTPPTSPNDTSPSQNPNPDASASPSSPA------ 528

Query: 1867 TNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGAT------------YTAFLANL 2010
                 + T     S S+ P S DF + P   + S  +                + +   L
Sbjct: 529  -----APTSPFHDSISSYPTSTDFDIVPHHRSSSPAIPPPRRSERDIHPPPYLSEYQYKL 583

Query: 2011 SNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPD 2190
             +++   S +++ ++  W +AM  EL ALE N+TW +   P   R IGCKWV+K+K  P+
Sbjct: 584  PSLKSVQSSTRSIQNPCWREAMTCELKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPN 643

Query: 2191 GTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFL 2370
            G++ERYKARLVAKG+ Q  G+DY ++FSPV K+ TVR+V+ALA+I  W + QLDV+NAFL
Sbjct: 644  GSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQWHIQQLDVSNAFL 703

Query: 2371 HGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHD 2550
            HG L ED+YM  P G +       C L++SLYGLKQ SR+W  K    L   G+ Q+  D
Sbjct: 704  HGDLLEDVYMELPQGLTGYSSSHSCKLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSD 763

Query: 2551 HCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIA 2730
            H LF ++               +++G + +EI  +K  L   F +KDLG  +YFLG+E+A
Sbjct: 764  HSLFTKRHGSAFTALLIYVDDIVLTGNSAAEITRIKHILHSNFHVKDLGQLKYFLGIEVA 823

Query: 2731 RNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRL 2910
             ++ G  L QRKY LD+L D+GML CK + TP+   L+L       L DP  +RRL+GRL
Sbjct: 824  HSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDDASGYLDDPLPYRRLVGRL 883

Query: 2911 LYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAY 3090
            +YL  TRPD+ +S QQLSQF++ P  +H  AAM +LRYLK  P  GLF+     + +  +
Sbjct: 884  VYLTNTRPDIAFSTQQLSQFMSKPTNAHHAAAMRVLRYLKSCPGTGLFFPRVCPIQVSGF 943

Query: 3091 CDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLS 3270
             DADWA+CV +R+S+TG+C F+G+ L+SWKTKKQTTVSRSS+EAEYRAL S  CE+QW+ 
Sbjct: 944  SDADWATCVASRRSITGYCFFIGNALISWKTKKQTTVSRSSSEAEYRALASATCELQWII 1003

Query: 3271 YLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHV 3450
            YL  DL +S+     L+CDN +A+HI  NPVFHERTKHL+IDCH+VR   ++G + L  V
Sbjct: 1004 YLLRDLHISLSQISLLYCDNTSALHIAANPVFHERTKHLDIDCHIVREKTQAGLMKLLPV 1063

Query: 3451 SSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNP 3552
             S  QLAD FTK+L   AF L  SKL L ++  P
Sbjct: 1064 PSAKQLADIFTKALPPHAFKLNLSKLQLQNIFAP 1097


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  826 bits (2134), Expect = 0.0
 Identities = 468/1189 (39%), Positives = 675/1189 (56%), Gaps = 26/1189 (2%)
 Frame = +1

Query: 55   KAKLICEHCSVTGHEKAECFKLHGYPDWFK------QLKEERSRMMANSVHSETIETGNH 216
            K + IC   +  GH    C+K HG+P  F       +  ++   + AN   S  + T   
Sbjct: 304  KGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLE 363

Query: 217  DQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALA 396
                 + +  +   +      A+ S   Q T  S Y       +D  G     S+   + 
Sbjct: 364  SMVGNLSKEQLQQFI------AMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIG 417

Query: 397  TL----ENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVC 564
             L      L   +W++D+GA+ H+     L S+L   S   +V  P G T  ++  G + 
Sbjct: 418  ILTVARHTLSSATWVIDSGATHHVSHDRSLFSSL-DTSVLSAVNLPTGPTVKISGVGTLK 476

Query: 565  LNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGS 744
            LN  + L +VL +P F+ NL+SIS LT     + +F  + C IQDL    +   G  V +
Sbjct: 477  LNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVAN 536

Query: 745  LYIFKDGXXXXXXXXLGIKDTESCNS--SFLLWHRRLGHASFPVLKHLDFFKGLSGDTDH 918
            LY+   G             + S N+     +WHRRLGHAS   L+ LD      G T H
Sbjct: 537  LYLLDVGD-----------QSISVNAVVDISMWHRRLGHAS---LQRLDAISDSLGTTRH 582

Query: 919  T---LDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDD 1089
                 D C +CH +KQ +L F +S       F+LLHIDVWGP++  ++ G  +FLTIVDD
Sbjct: 583  KNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDD 642

Query: 1090 FSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTE--FTSKECQNLFHSH 1263
             SRATW+YL+  K++V T+   F++ +E Q++  VK  RSDN  E  FTS      +   
Sbjct: 643  HSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTS-----FYAEK 697

Query: 1264 GIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSA 1443
            GI+   +C  TP+QN +VERKH+H+LNVARALMFQS +P   W   VL A +LINR PS 
Sbjct: 698  GIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQ 757

Query: 1444 LLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYR 1623
            LL  KTP+E+L G +P Y  LR FGCL Y++ +   + KF  R+  C+FLGY +G KGY+
Sbjct: 758  LLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYK 817

Query: 1624 LYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPE 1803
            L DL+++++  SR+V F E+ FP A  P   +                   + +P S P 
Sbjct: 818  LMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPS 877

Query: 1804 S----HPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSS 1971
                  P   S R+ KPPA L+D+  N++ S            P S   S +  S +H  
Sbjct: 878  QISDLPPQISSQRVRKPPAHLNDYHCNTMQSDHKY--------PISSTISYSKISPSHM- 928

Query: 1972 ILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAI 2151
                    ++ N++ +  P+++++A  + +W +A+  E+ A+E+ NTW +T+LP GK+A+
Sbjct: 929  -------CYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAV 981

Query: 2152 GCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKG 2331
            GCKWV+ +K   DG +ERYKARLVAKG+ Q+ G+DY D+FSPVAK+ T++L++ ++  K 
Sbjct: 982  GCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKK 1041

Query: 2332 WPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAK-----PGEVCHLQRSLYGLKQVSRQWN 2496
            W L QLDV+NAFL+G L+E+I+M  P+GY++ K        V  L+RS+YGLKQ SRQW 
Sbjct: 1042 WFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWF 1101

Query: 2497 AKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDL 2676
             KF   L   GF ++  DH LFL+                +I+ T+ +    L   LD  
Sbjct: 1102 KKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQR 1161

Query: 2677 FTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAK 2856
            F ++DLG  +YFLG+E+AR T G  + QRKY L++L   GML CK    P+ P LK+R  
Sbjct: 1162 FKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKD 1221

Query: 2857 EGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGS 3036
            +GD + D E++RR++G+L+YL +TRPD+T++V +L QF ++P T+H  AA  +L+Y+KG+
Sbjct: 1222 DGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGT 1281

Query: 3037 PSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSA 3216
               GLFYSA S L L+ + D+DWASC D+R+S T F +F+G  L+SW++KKQ TVSRSSA
Sbjct: 1282 VGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSA 1341

Query: 3217 EAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEID 3396
            EAEYRAL    CE+ WL  L   L  S P P+ L+ D+ AAI+I  NPVFHERTKH+++D
Sbjct: 1342 EAEYRALALATCEMVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLD 1400

Query: 3397 CHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDL 3543
            CH VR    +G L L HV +  Q+AD  TK L    F  L SK+ + ++
Sbjct: 1401 CHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSILNI 1449



 Score =  151 bits (382), Expect = 5e-33
 Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 8/223 (3%)
 Frame = +1

Query: 3853 NLGPVLNTGT----TESEYDD---DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIAL 4011
            N  PV  +G     T SE  D    P  L+S+DHPGL+++S +L   NY  W  +MLI+L
Sbjct: 36   NSPPVNRSGASRALTSSESGDPTQSPFFLHSADHPGLNIISHRLDETNYGDWSVAMLISL 95

Query: 4012 GAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWD 4191
             AK K GFI+G +  P E    +  W + + MV SW+LNS+S  +  + +  + A D+W 
Sbjct: 96   DAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWR 155

Query: 4192 DIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPL-PACESDTR 4368
            D+  RF   N P  Y L ++I +  QG +S+ EY+T+LK LWD+L     L   C     
Sbjct: 156  DLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKA 215

Query: 4369 KLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAY 4497
              + ++    K+++FL GL+ESY  VR Q++    LPS+ + Y
Sbjct: 216  MRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVY 258


>dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subterraneum]
          Length = 1494

 Score =  826 bits (2133), Expect = 0.0
 Identities = 467/1213 (38%), Positives = 677/1213 (55%), Gaps = 41/1213 (3%)
 Frame = +1

Query: 28   GGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIET 207
            G    T + + K  C +C  T H    CF+ HG+P  ++   ++ + + + +    +   
Sbjct: 263  GKANSTSQSQKK--CTYCHKTNHVVDNCFRKHGFPPGYRF--KDGTVVGSKNQGQSSANC 318

Query: 208  GNHDQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQY 387
             N D + E   +D       E  +AL + L+      E      + + F  +      Q 
Sbjct: 319  VNADDNMEQSSVDTRMTFSAEDYQALMALLKNSKSAGEGSSQVNNVSKFIASSFTNDKQG 378

Query: 388  ALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCL 567
             +        D+WI+D+GA+ H+CAS  L +    ++  + V  P+GS       G + +
Sbjct: 379  NVPN----HLDTWIIDSGATDHVCASLSLFTEYRKVNP-IPVKLPNGSIVTTDIIGNISI 433

Query: 568  NSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSL 747
              T+TL  VL +P F +NL+S+S++++  +    F  + C IQ+   + +   G  +  L
Sbjct: 434  TPTITLKHVLYMPHFSFNLISVSRVSKDLDCVFAFTDNLCFIQN-SLQRMIGSGRMLNGL 492

Query: 748  YIFKDGXXXXXXXXLGIKDTESCNSSFL----LWHRRLGHASFPVLKHLDFFKGLSGDTD 915
            Y + +G         G    + CNS  +    LWH R GH S      L+  + L    +
Sbjct: 493  Y-YLEGTHSQPNLLTG----KQCNSLAIPNNALWHFRFGHTS---QNRLEILQKLYPTIE 544

Query: 916  -HTLD-SCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDD 1089
             + +D  C++CH +KQ +LP+++S   +S   ELLH+D+WGP++  +  G  +FLTIVDD
Sbjct: 545  VNKVDFCCDVCHLAKQRKLPYVTSSSRASVILELLHMDIWGPFSTSTTHGHKYFLTIVDD 604

Query: 1090 FSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGI 1269
            FSR TW+ L+  K +V + + +F+   E  F   VK  RSDNG EF S      + S GI
Sbjct: 605  FSRFTWIVLLKGKYEVASKVQEFINFAENHFCHKVKFLRSDNGQEFLS--LSKFYISKGI 662

Query: 1270 IHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALL 1449
             HQ +CVYTPQQNG VERKH+ +LN+ARALM QS LP+++W ++VL + +++NR+PS  L
Sbjct: 663  QHQTSCVYTPQQNGRVERKHQCILNIARALMTQSHLPAKYWGYAVLQSVFIMNRVPSNAL 722

Query: 1450 HWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLY 1629
              + PF  L+G  P  S+L+ FG L + +     +SK   RA KCV+LG   G KGY   
Sbjct: 723  KGQIPFVALYGKLPELSDLKVFGSLCFVSTHDNQRSKLDPRARKCVYLGIKPGVKGYVAL 782

Query: 1630 DLDNHSLLTSRDVVFFEDSFPFASI----------PVPSNXXXXXXXXXXXXXXXXXXXS 1779
            DL N+ ++ SR+VVF E  FP+             P P+                    S
Sbjct: 783  DLHNYEIIVSRNVVFEETIFPYPVSNSKTAWEYVEPTPNTHPSTEPTKTRNSQETTDDLS 842

Query: 1780 S--------APISQPESHPL-------------RRSSRISKPPAWLSDFITNSVHSSTPM 1896
            +         P+ QP                  RRS+RI + P  L D+  N++   TP 
Sbjct: 843  TNHDHDSIDLPLDQPSDRTTTSTHDQKFTNSSPRRSTRIKQTPLHLMDYQCNAITHKTPY 902

Query: 1897 ASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAM 2076
                              +SF   + L  +Y+ F  +L    EP+++++A K   WV AM
Sbjct: 903  PI----------------SSFISHNNLSKSYSTFCLSLLADTEPTTYAEASKHECWVKAM 946

Query: 2077 QRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVD 2256
            + ELTAL  N TW++T LP G + IG KWVYK+K + DGT++RYKARLVAKG++Q  GVD
Sbjct: 947  KNELTALANNKTWIITDLPEGVKPIGSKWVYKIKRKADGTIDRYKARLVAKGYNQIEGVD 1006

Query: 2257 YLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMVPPDGYSKAKPG 2436
            +  +FSPVAK+ T+R V+A+A+IK W + QLDV+NAFLHG LDE++YM  P  +  A   
Sbjct: 1007 FSQTFSPVAKMTTIRTVLAIASIKNWHIHQLDVDNAFLHGDLDENVYMTVPQRFEGATSR 1066

Query: 2437 EVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHDHCLFLRQTXXXXXXXXXXXXXX 2616
            +VC LQ+ LYGL+Q SRQW  K    L   G+     D  LF + T              
Sbjct: 1067 QVCKLQKFLYGLRQASRQWYEKLSHFLITIGYKHMPSDPTLFTKTTSASFTTLLVYVDDI 1126

Query: 2617 IISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAG 2796
            ++SG  L+EI++ K  L   F IKD+G  ++FLG+E+A +  G  L QRKY LD+L+D G
Sbjct: 1127 VLSGNCLAEIESTKSQLHQAFGIKDIGVLKFFLGLEVAHSQQGITLCQRKYCLDLLNDTG 1186

Query: 2797 MLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVN 2976
             L CK +  P+ P  +L   + +P  +   +R L+G+LLYL  TRPD+ + VQQLSQF++
Sbjct: 1187 NLGCKPSSIPMDPSNRLHHDDSEPHSNITEYRALVGKLLYLTSTRPDIAFPVQQLSQFLD 1246

Query: 2977 SPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFL 3156
            +P T+H+ AA  +LRYLKG+P  GLF+  ++SL L  + DADW  C D+R+S+TG+C F+
Sbjct: 1247 APTTAHFKAAHKVLRYLKGNPGTGLFFPRNASLQLMGFSDADWGGCPDSRRSITGYCFFI 1306

Query: 3157 GSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQA 3336
            G  L+ WK+KKQ TVS+SS+EAEYRAL S  CE+QWLSYL  DL + I     L+CD+Q+
Sbjct: 1307 GQSLICWKSKKQLTVSKSSSEAEYRALASATCELQWLSYLLKDLQVHIDKANVLYCDSQS 1366

Query: 3337 AIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLL 3516
            A+HI  NPVFHERTKHL+IDCH+VR   ++G + L  +S   Q AD  TK+L  A F  L
Sbjct: 1367 ALHIASNPVFHERTKHLDIDCHIVREKLQAGLMKLLPISGYNQTADILTKALHPANFHRL 1426

Query: 3517 CSKLGL----FDL 3543
             SKLGL    FDL
Sbjct: 1427 FSKLGLSLRGFDL 1439



 Score =  142 bits (357), Expect = 5e-30
 Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
 Frame = +1

Query: 3904 DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYD 4083
            +P  ++ ++    +LVS  L G NY +W RSM+ A+  K KL F++G   +P + +P Y+
Sbjct: 26   NPYYVHPNESATAALVSPLLDGKNYHAWSRSMMKAVIMKNKLRFLDGSCPMPDQFAPTYE 85

Query: 4084 QWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANM 4263
             W + + +V+SW++NS+   +  + +Y DSA   W D+  RF   +   +  L+R++  +
Sbjct: 86   PWIRCNNLVLSWLMNSVVPSISQSLVYTDSAAQAWSDLKARFSRADRVRVASLQRELYAL 145

Query: 4264 NQGNMSVVEYFTKLKRLWDELACIMPLPACESDTR---------KLIDERDMNRKLMQFL 4416
             Q + SV E+FTKLK LW+EL    P+P C    R         K   E D+   ++ FL
Sbjct: 146  RQESSSVTEFFTKLKGLWEELELSRPIPTCTCTFRCVCEAMRNAKKFKEEDL---ILLFL 202

Query: 4417 MGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVE 4518
             GL++ Y  VR+Q+LLM+P P ++  + + ++ E
Sbjct: 203  TGLNDHYAMVRSQILLMEPFPVLNAVFGLVIQHE 236


>gb|KYP31387.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  805 bits (2078), Expect = 0.0
 Identities = 428/1004 (42%), Positives = 613/1004 (61%), Gaps = 10/1004 (0%)
 Frame = +1

Query: 421  SWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLL 600
            +WILD+GA+ H+       + L PIS  +S+  P+        SG V L + L LH+ L 
Sbjct: 19   TWILDSGATDHIFPFKSNFTTLTPISP-ISIQLPNQQFVTAKFSGTVVLGN-LILHNTLF 76

Query: 601  VPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXX 780
            VP F   L+SI +L  S++   +F  ++C+I  + T ++  V +    L+          
Sbjct: 77   VPDFSVQLISIPKLINSNDCLVIFCKNHCVIVQITTFQMIGVAKKYQGLFHLLGNNNLNV 136

Query: 781  XXXLGIKDTESCNSSFL--------LWHRRLGHASFPVLKHL-DFFKGLSGDTDHTLDSC 933
                 +    S   + L        LWH +LGH S  +L+ L   +  +S +  H   +C
Sbjct: 137  SDSSTLSYQSSLQHTALVNNTNICTLWHMKLGHPSNKILQVLASQYSAISFNPVH---AC 193

Query: 934  EICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVY 1113
            + C  +KQ +LP+ +S   ++  FEL+H+D+WGP    S+ G  +FLTIVDD+SR TW+ 
Sbjct: 194  DACSFAKQKKLPYSTSTTRTTSFFELIHVDIWGPIAITSIEGYKYFLTIVDDYSRFTWIL 253

Query: 1114 LMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVY 1293
            L+ +K+ V  ++  F+ L E QF   +K  RSDN  EF   +    F++ GI H+ +CV 
Sbjct: 254  LLKNKSDVKIILPNFIILTENQFSCKLKRLRSDNRKEFFIND---FFNAKGIFHETSCVE 310

Query: 1294 TPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFEL 1473
            TPQQNGIVERKH+HLLNV RAL+FQ+ +P+ FW  ++  A Y+INRLP+  L+ K+P+EL
Sbjct: 311  TPQQNGIVERKHQHLLNVCRALLFQAKVPNNFWSHALKLAVYIINRLPTPFLNHKSPYEL 370

Query: 1474 LHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLL 1653
            +H   P  SNL+ FGCLSYA++    ++K A ++ KC+FLGY  G KGY LYDL + S+ 
Sbjct: 371  VHLIKPYLSNLKVFGCLSYASSLTSGRTKLAPKSLKCIFLGYKPGTKGYVLYDLHSKSIF 430

Query: 1654 TSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXXSSAPISQPESHPLRRSSRI 1833
            TSR+VVF E+ FP+ +    ++                    + PIS   +  +  +S  
Sbjct: 431  TSRNVVFHENIFPYHTSQSDTSQLPIDHTHSTTDIIHFDFPPTLPISPATTVAINDNSSN 490

Query: 1834 SKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLS 2013
            +     ++D I ++ + +T +  P +       +       + H    GA   AF +   
Sbjct: 491  A-----VNDSIVSNDNQNTQIVIPPNRVSLRVKN----RPRYLHQYYCGA---AFASQSH 538

Query: 2014 NVEEPSS-FSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPD 2190
            +   P   F  + +S  W  AM  EL AL++N+TW LT LPP K+ +GC+WVY++K + D
Sbjct: 539  STPYPMHLFLSSSQSDCWQQAMASELIALDKNHTWTLTHLPPDKKLVGCRWVYRIKHKAD 598

Query: 2191 GTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFL 2370
            G++ER+KARLVAKGF Q  GVDY ++FSPV KL TVR+++A+A+   W L QLDV+NAFL
Sbjct: 599  GSIERFKARLVAKGFTQTEGVDYFETFSPVVKLTTVRVLLAVASANNWFLHQLDVDNAFL 658

Query: 2371 HGYLDEDIYMVPPDGYSKAKPGEVCHLQRSLYGLKQVSRQWNAKFCLKLQQFGFTQSAHD 2550
            HG L E++YM PP G S   P  VC LQ+SLYGLKQ SR WN K   +L   G+ QS  D
Sbjct: 659  HGDLHEEVYMKPPPGLSLPHPKLVCKLQKSLYGLKQASRNWNQKLTSELLFLGYKQSFAD 718

Query: 2551 HCLFLRQTXXXXXXXXXXXXXXIISGTNLSEIDALKRYLDDLFTIKDLGYARYFLGMEIA 2730
            + LF++                ++SG +L EI ++K +L   F IKDLG  +YFLG+E+A
Sbjct: 719  NSLFVKTQGSMITVLLVYVDDIVLSGNSLFEIQSVKNHLHAKFHIKDLGPLKYFLGLEVA 778

Query: 2731 RNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRL 2910
            R+  G +LNQRKY L++L ++GML CK + TP  P +KL A +G  + DP  FRRLIGRL
Sbjct: 779  RSKTGLILNQRKYCLELLSESGMLGCKPSSTPADPCVKLHADQGTLISDPSPFRRLIGRL 838

Query: 2911 LYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAY 3090
            LYL  TRPD+ ++VQQLSQFV+ P   H   AM +L+YLK +P  GLFY +++ L ++A+
Sbjct: 839  LYLTNTRPDIGFAVQQLSQFVSCPREPHMQQAMRILKYLKNAPGSGLFYPSNTPLKIQAF 898

Query: 3091 CDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLS 3270
             D DWA+C  TR+S+TG+C+FLG  LV+WK+KKQ+TV RS +EAEYRAL S  CE+QWL 
Sbjct: 899  SDYDWATCATTRRSVTGYCVFLGKSLVTWKSKKQSTVFRSYSEAEYRALASLTCELQWLQ 958

Query: 3271 YLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCH 3402
            YL  DL +S+P P + +CD+Q+AI I +NP FHERTKH+E+DCH
Sbjct: 959  YLFNDLQISVPVPYSTFCDSQSAIQIAKNPTFHERTKHIEVDCH 1002