BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00006622
         (1445 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo...   637   0.0  
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]   574   0.0  
gb|KYP43625.1| Retrovirus-related Pol polyprotein from transposo...   558   0.0  
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   536   e-175
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   532   e-173
ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabid...   518   e-172
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]                        527   e-171
gb|PNY02748.1| hypothetical protein L195_g026067, partial [Trifo...   516   e-171
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...   519   e-171
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         528   e-171
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   528   e-171
dbj|GAU33542.1| hypothetical protein TSUD_143350 [Trifolium subt...   521   e-171
gb|KYP61490.1| Retrovirus-related Pol polyprotein from transposo...   523   e-170
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   523   e-170
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   520   e-169
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   520   e-168
gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...   519   e-168
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...   519   e-168
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...   518   e-168
gb|KYP79141.1| Retrovirus-related Pol polyprotein from transposo...   506   e-167

>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1120

 Score =  637 bits (1643), Expect = 0.0
 Identities = 309/484 (63%), Positives = 369/484 (76%), Gaps = 6/484 (1%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            AM  +VDD+WLWHRRFGHFN+  LK+L+QK MMRDLP++KE +  CEGC+LGKQHR  F 
Sbjct: 356  AMNVEVDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPSLKENNEACEGCLLGKQHRSSFS 415

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
            + KAWRAK  LEL+HT++CGPMRTPS+  NRYFILFI D++RMTWVYFL+ KS+VF IFK
Sbjct: 416  TSKAWRAKDLLELIHTNVCGPMRTPSHTNNRYFILFIYDFSRMTWVYFLKTKSEVFGIFK 475

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
            KFKA VEKQSG +IK +RSDRGKEYTS +F KFCEDEG+E QLTV Y P+QNGV ERKNR
Sbjct: 476  KFKALVEKQSGKQIKVLRSDRGKEYTSCEFDKFCEDEGIERQLTVAYTPQQNGVLERKNR 535

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
             VME  RSML EKGLP  FWAEAV T VYLLNR PT A ++ TP+E+ S  KP+ KHLRV
Sbjct: 536  IVMEMERSMLKEKGLPNIFWAEAVYTVVYLLNRFPTNAFRENTPIESCSGNKPATKHLRV 595

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            FG ICY+H+P +KR KL++KT + IFLGYS+QSKGYRVY+L T+KL ISRD+  DE+A +
Sbjct: 596  FGSICYIHVPDEKRHKLEDKTVRGIFLGYSSQSKGYRVYNLQTKKLTISRDIEVDENATW 655

Query: 911  NWETNQVEKRSINLP---KLTHEQEETSND---PPETPERAXXXXXXXXXXXXXXXXRSL 1072
            NWE  ++EK++I +P     T   E+ + D    PE+P R                 RSL
Sbjct: 656  NWEEKRIEKKTIYMPINQPTTSSLEDNNQDIVISPESP-RIVPQQEESSPESTPRRVRSL 714

Query: 1073 REIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWV 1252
             +IY+TCNL I+EP S+E AA QEVWVKA          N TWEL D P  K+ IGVKWV
Sbjct: 715  VDIYETCNLAILEPGSFEEAANQEVWVKAMEEEIKMIEKNNTWELVDFPHGKDIIGVKWV 774

Query: 1253 YKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIYQ 1432
            YKTKLNPDG++QK+KARLVAKGY+Q+ G+DY+ETFAPVARLDTIR LIALAA K W IYQ
Sbjct: 775  YKTKLNPDGTIQKHKARLVAKGYSQKPGVDYNETFAPVARLDTIRTLIALAAHKGWNIYQ 834

Query: 1433 LDVK 1444
            LDVK
Sbjct: 835  LDVK 838


>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score =  574 bits (1479), Expect = 0.0
 Identities = 285/501 (56%), Positives = 350/501 (69%), Gaps = 20/501 (3%)
 Frame = +2

Query: 2    NDAAMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQ 181
            N A     V++ WLWHRRFGH N   LK+L Q+ M                      HRQ
Sbjct: 540  NVALRMEDVEEAWLWHRRFGHLNFNSLKMLCQRKM---------------------HHRQ 578

Query: 182  PFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFD 361
             FP G AWRAKK LELVHTDICGPM TPS   N+YF+LFIDD+TRMTWV+F+++KS+VF 
Sbjct: 579  SFPKGVAWRAKKVLELVHTDICGPMSTPSQGNNKYFVLFIDDFTRMTWVFFMKQKSEVFS 638

Query: 362  IFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSER 541
            IFKKFK++VEKQSG  IKT+RSDRG EYTS+QF  FCEDEGVE QLTV Y P+QNGV ER
Sbjct: 639  IFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAYTPQQNGVVER 698

Query: 542  KNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKH 721
            KN+TVME A++ML EKGLPK FWAEAV+TAVYLLNRCPTKA+ +KTP+EAWS RKPS +H
Sbjct: 699  KNQTVMEMAKAMLYEKGLPKIFWAEAVNTAVYLLNRCPTKALLNKTPIEAWSGRKPSVRH 758

Query: 722  LRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDED 901
             +VFGC+CY  +P+Q+RSKLDE +EKCIF+GYS+QSKGYR+Y+L T KLIISRDV+FDE 
Sbjct: 759  FKVFGCLCYSQVPKQRRSKLDETSEKCIFMGYSSQSKGYRLYNLKTXKLIISRDVIFDEK 818

Query: 902  AAYNWETNQVEKRSINLPKL--------------THEQEETSNDPPETPERAXXXXXXXX 1039
             A+NWE  ++ K++I + +L              T   +E+    P +P           
Sbjct: 819  VAWNWEEGKILKKTILVDELQTKAPVETGNGSTSTSSPQESPRSVPLSPSIESPTSXSSS 878

Query: 1040 XXXXXXXXRSLREIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLP 1219
                    RSL ++Y+ CNL I+EP S+E A K E W KA          NETW+L + P
Sbjct: 879  PSSTPRKMRSLTDVYERCNLCIVEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKP 938

Query: 1220 QDKEAIGVKWVYKT------KLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDT 1381
            +DKE IGVKW+++       K + DG VQ+ KARLVAKGY+QQ G D+ ETFAPVARLDT
Sbjct: 939  KDKEIIGVKWIFRVKWIFRXKYHSDGRVQRLKARLVAKGYSQQPGXDFHETFAPVARLDT 998

Query: 1382 IRALIALAAQKQWKIYQLDVK 1444
            IR +IA+AAQK W +YQLD+K
Sbjct: 999  IRTIIAVAAQKGWLLYQLDIK 1019


>gb|KYP43625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1262

 Score =  558 bits (1438), Expect = 0.0
 Identities = 263/473 (55%), Positives = 343/473 (72%), Gaps = 2/473 (0%)
 Frame = +2

Query: 32   DTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWRA 211
            D+ LWH+RFGH+NL+ ++   ++ +++DLP I+    VCE C LGKQ+R PFP+   WRA
Sbjct: 404  DSKLWHKRFGHYNLKSIQFAQKQELVKDLPNIQICSEVCESCQLGKQYRLPFPNSVTWRA 463

Query: 212  KKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYVE 391
             + LELVH+D+CGPM+T S   N+YFILFIDD+TRMTWVYFL++KS+VF +FKKFKA VE
Sbjct: 464  NEKLELVHSDVCGPMKTTSLNGNKYFILFIDDFTRMTWVYFLKQKSEVFSVFKKFKALVE 523

Query: 392  KQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETAR 571
             QSG  +K +R+D GKEYTST+F  FC+D GVEHQLTV Y+P+QNGV+ERKNR+V+E AR
Sbjct: 524  AQSGFLLKKLRTDNGKEYTSTEFNIFCDDLGVEHQLTVSYSPQQNGVAERKNRSVLEMAR 583

Query: 572  SMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICYV 751
             M+ EK LPKSFWAEA++TAVYL NR PT+A++  TPVEAW   KPS +HL+VFG +CY 
Sbjct: 584  CMIFEKKLPKSFWAEAINTAVYLQNRLPTRAIKGMTPVEAWGGIKPSVRHLKVFGSLCYT 643

Query: 752  HIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETNQV 931
            H+P  KRSKLDE+ E+ I +GYS++SKGY+VY + + K+ +SRD+  DEDA +NWET Q+
Sbjct: 644  HVPAVKRSKLDERAERGILIGYSSKSKGYKVYGIDSGKVSVSRDIKVDEDAYWNWETCQM 703

Query: 932  EKRSI--NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIYQTCNLTI 1105
            E+  +         +QEE  +D                        R L EIYQ CN+ +
Sbjct: 704  ERHLVLPTFESTIEDQEEDIDD-----------------DFAIRGTRHLSEIYQRCNVVV 746

Query: 1106 MEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWVYKTKLNPDGSV 1285
            +EP ++E A+K + W +A          N+TW+L D P+DK  IGVKWVY+TKLNPD S+
Sbjct: 747  LEPTNFEEASKVDEWNQAMKEEMTTIEDNKTWQLVDKPKDKNVIGVKWVYRTKLNPDRSI 806

Query: 1286 QKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
             KYKA LV KGY QQ GIDY+ETFAPVAR+DTIR L+ALAAQ +W+I+ LDVK
Sbjct: 807  NKYKAILVVKGYVQQPGIDYTETFAPVARMDTIRILLALAAQMKWEIWHLDVK 859


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF99717.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1335

 Score =  536 bits (1381), Expect = e-175
 Identities = 267/510 (52%), Positives = 339/510 (66%), Gaps = 32/510 (6%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            A+ ++VD + LWH+R GH N + LK+L  K M++ LP I      CEGC+ GKQ R  FP
Sbjct: 447  ALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFP 506

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
               AWRA  PLELVH DI G + T S   N YFI FIDDYTRM WVYFL+EKS   +IFK
Sbjct: 507  HSGAWRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFK 566

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
            KFKA VE QS  KIK +RSD+G+EY S +F K+CE+ G+  QLT GY+ +QNGV+ERKNR
Sbjct: 567  KFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNR 626

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
            T+ + A SML +KG+PKSFWAEAV+TAVY+LNR PTKAV ++TP EAW  +KP   H+RV
Sbjct: 627  TINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRV 686

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            FGCICY  +P QKR K D K+++CIF+GY+   KGYR+Y+L  +K+IISRD +FDE A +
Sbjct: 687  FGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDESATW 746

Query: 911  NWETNQVEKR--------SINLPKL--THEQEE----------------------TSNDP 994
            NW++ +            ++  P +  THE E+                      +S + 
Sbjct: 747  NWKSPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQ 806

Query: 995  PETPERAXXXXXXXXXXXXXXXXRSLREIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXX 1174
              TPE A                +   E ++ CN +++EP S++ A K + W+KA     
Sbjct: 807  ISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEI 866

Query: 1175 XXXXXNETWELTDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSET 1354
                 N TWEL D P+D+E IGVKWVYKTKLNPDGSVQKYKARLVAKG+ Q+ GIDY ET
Sbjct: 867  HMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYET 926

Query: 1355 FAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
            +APVARL+TIR +IALAAQK+WKIYQLDVK
Sbjct: 927  YAPVARLETIRTIIALAAQKRWKIYQLDVK 956


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
 gb|AAP51797.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1350

 Score =  532 bits (1371), Expect = e-173
 Identities = 265/510 (51%), Positives = 338/510 (66%), Gaps = 32/510 (6%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            A+ +++D + LWH+R GH N + LK+L  K M++ LP I      CEGC+ GKQ R  FP
Sbjct: 370  ALRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFP 429

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
               AWRA  PLELVHTDI G + T S   N YFI FIDDYTRM WVYFL+EKS   +IFK
Sbjct: 430  HSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFK 489

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
            KFKA VE QS  KIK +RSD+G EY S +F K+CE+ G+  QLT GY+ +QNGV+ERKNR
Sbjct: 490  KFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNR 549

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
            T+ + A SML +KG+PKSFWAEAV+TA+Y+LNR PTKAV ++TP EAW  +KP   H+RV
Sbjct: 550  TINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRV 609

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            FGCICY  +P QKR K D K++ CIF+GY+   KGYR+Y+L  +K+IISRDV+FDE A +
Sbjct: 610  FGCICYAQVPAQKRVKFDNKSDWCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATW 669

Query: 911  NWETNQVEKR--------SINLPKL--THEQEETSNDPP--------------------- 997
            NW++ +            ++  P +  TH  E+ ++ P                      
Sbjct: 670  NWKSPEASSTPLLPTTTITLGQPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQ 729

Query: 998  -ETPERAXXXXXXXXXXXXXXXXRSLREIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXX 1174
              TPE A                +   E ++ CN +++EP S++ A K + W+KA     
Sbjct: 730  ISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEI 789

Query: 1175 XXXXXNETWELTDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSET 1354
                 N TWEL D P+D++ IGVKWVYKTKLNPDGSVQKYKARLVAKG+ Q+ GIDY ET
Sbjct: 790  HMIEKNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYET 849

Query: 1355 FAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
            +APVARL+TIR +IALAAQK+WKIYQLDVK
Sbjct: 850  YAPVARLETIRTIIALAAQKRWKIYQLDVK 879


>ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 961

 Score =  518 bits (1334), Expect = e-172
 Identities = 255/500 (51%), Positives = 341/500 (68%), Gaps = 19/500 (3%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GLK+L++K M+R LP I   + VCEGC+LGKQ
Sbjct: 450  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLKLLSKKEMVRGLPCINHPNQVCEGCLLGKQ 509

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 510  FKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 569

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+ FK+FKA+VEK+SG  IK++RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 570  VFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 629

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
            +ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK++  KTP EAWS RKP 
Sbjct: 630  AERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPG 689

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KRSKLD+K+EK IF+GY   SKGY++Y+  T+K IISR+V+F
Sbjct: 690  VSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVF 749

Query: 893  DEDAAYNWETNQVEKRSINLPKLTHEQEETSND------PPETPERAXXXXXXXXXXXXX 1054
            DE+  ++W++N+ +      P    +  E + D      P   P                
Sbjct: 750  DEEEEWDWKSNEDDYNF--FPHFEEDDSELTRDEPPREEPTTPPTSPTSSQGEESSSERT 807

Query: 1055 XXXRSLREIYQTC----NLTIM------EPDSYEAAAKQEVWVKAXXXXXXXXXXNETWE 1204
               RSL+E+Y+      NLT+       EP  ++ A +++ W  A          N+TWE
Sbjct: 808  LHFRSLQELYEVTENQDNLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKAIKKNDTWE 867

Query: 1205 LTDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTI 1384
            L  LP   +AIGVKWVYK K N  G V++YKARLVAKGY+Q+  IDY E FAPVARL+T+
Sbjct: 868  LASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRARIDYDEVFAPVARLETV 927

Query: 1385 RALIALAAQKQWKIYQLDVK 1444
            R +I+LAAQ +WKI+Q+DVK
Sbjct: 928  RLIISLAAQNKWKIHQMDVK 947


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]
          Length = 1314

 Score =  527 bits (1357), Expect = e-171
 Identities = 263/510 (51%), Positives = 333/510 (65%), Gaps = 32/510 (6%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            A+ ++VD + LWH+R GH N + LK+L  K M++ LP I      CEGC+ GKQ +  FP
Sbjct: 454  ALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIQASFP 513

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
               AWRA  P ELVHTDI G + T S   N YFI FIDDYTRM WVYFL+EKS   + FK
Sbjct: 514  HSGAWRASAPFELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEKSAALETFK 573

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
            KFK  VE QS  KIK +RSD+G EY S +F K+CE+ G+  QLT GY+ +QNGV+ERKNR
Sbjct: 574  KFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQQNGVAERKNR 633

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
            T+ + A SML +KG+PKSFWAEAV+TAVY+LNR PTKAV ++TP EAW  +KP   H+RV
Sbjct: 634  TINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRV 693

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            F CICY  +P QKR K D K+ +CIF+GY+   KGYR+Y+L  +K+IISRDV FDE A +
Sbjct: 694  FACICYAQVPAQKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKKIIISRDVFFDESATW 753

Query: 911  NWETNQVEKR--------SINLPKL--THEQEE----------------------TSNDP 994
            NW++ +            ++  P +  THE E+                      +S + 
Sbjct: 754  NWKSPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQ 813

Query: 995  PETPERAXXXXXXXXXXXXXXXXRSLREIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXX 1174
              TPE A                +   E ++ CN +++EP S++ A K + W+KA     
Sbjct: 814  ISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEI 873

Query: 1175 XXXXXNETWELTDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSET 1354
                 N TWE  D P+D+E IGVKWVYKTKLNPDGSVQKYKARLVAKG+ Q+ GIDY ET
Sbjct: 874  HMIEKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYET 933

Query: 1355 FAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
            +APVARL+TIR +IALAAQK+WKIYQLDVK
Sbjct: 934  YAPVARLETIRTIIALAAQKRWKIYQLDVK 963


>gb|PNY02748.1| hypothetical protein L195_g026067, partial [Trifolium pratense]
          Length = 940

 Score =  516 bits (1330), Expect = e-171
 Identities = 256/479 (53%), Positives = 323/479 (67%)
 Frame = +2

Query: 8    AAMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPF 187
            AAM  +V  T LWH+R GHF+   L  + + N++ DLP ++ +   C  C  GKQ R PF
Sbjct: 449  AAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPF 508

Query: 188  PSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIF 367
                 WRA + L+LVHTD+ GPM+TPS   ++Y+I FIDDY+RM W+YF++ KS+V  IF
Sbjct: 509  QQNNTWRATQKLQLVHTDVGGPMKTPSLNGSKYYIAFIDDYSRMCWIYFMKFKSEVAGIF 568

Query: 368  KKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKN 547
             KFKA+VE QSG K++ IRSD G EYTS +F KFCED G+EHQLT  Y P+QNGV ERKN
Sbjct: 569  MKFKAWVETQSGSKMQVIRSDNGTEYTSEKFNKFCEDAGIEHQLTAPYTPQQNGVVERKN 628

Query: 548  RTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLR 727
            RT+ME AR ML +KGLPK FWAEA +TAV+LLNR PTKAVQ KTP EAW   KP   +L+
Sbjct: 629  RTIMEMARCMLHDKGLPKEFWAEAANTAVFLLNRLPTKAVQKKTPFEAWHGSKPKLINLK 688

Query: 728  VFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAA 907
             FGC+C+ +I Q KR KLD+K E  IF+GYS  +K YR+Y     K+I+SRDV F E  +
Sbjct: 689  TFGCLCFSYIHQVKRDKLDKKAEPGIFVGYSLIAKAYRIYLPHQNKIIVSRDVKFMELDS 748

Query: 908  YNWETNQVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIYQ 1087
            ++WE +++E + +N         E  +D P   E                  RSL +IYQ
Sbjct: 749  WSWENDKIEFQEVN---------EDVDDEPVRGE------------------RSLSDIYQ 781

Query: 1088 TCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWVYKTKL 1267
             CN+ IMEP  YE AA  + W+ A          N+TW+L D P  K+AIGVKWVY+TKL
Sbjct: 782  RCNVAIMEPAGYEEAATDKKWMDAMKEELKMIEKNQTWKLVDRPNHKKAIGVKWVYRTKL 841

Query: 1268 NPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
            N DGS+ KYKARLV KGYAQ +G+D+SETFAPVARLDTIR L+ALAAQ  W I+Q+DVK
Sbjct: 842  NSDGSLNKYKARLVVKGYAQIFGVDFSETFAPVARLDTIRLLLALAAQNGWVIHQMDVK 900


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score =  519 bits (1337), Expect = e-171
 Identities = 258/490 (52%), Positives = 336/490 (68%), Gaps = 18/490 (3%)
 Frame = +2

Query: 29   DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWR 208
            D +WLWH RFGH N +GL++L++K M+R LP I   + VCEGC+LGKQ R  FP     R
Sbjct: 395  DQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSR 454

Query: 209  AKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYV 388
            A+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+VF+ FKKFKA+V
Sbjct: 455  AQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHV 514

Query: 389  EKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETA 568
            EK+SG  IK +RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV+ERKNRT++E A
Sbjct: 515  EKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMA 574

Query: 569  RSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICY 748
            RSML  K LPK FWAEAV+ AVYL NR PT++V  KTP EAWS RKP   HLRVFG I +
Sbjct: 575  RSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAH 634

Query: 749  VHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETN- 925
            VH+P +KRSKLD+K+EK IF+GY   SKGY++Y+  +RK IISR+V+FDE+  ++W TN 
Sbjct: 635  VHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNC 694

Query: 926  -------QVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIY 1084
                    VE+  +   +   + +ET   PP +P                   RSL+EIY
Sbjct: 695  EDHTFFPCVEEDDV---EQQQQPQETPTTPPTSPNTT--LQDYESSSERMPRFRSLQEIY 749

Query: 1085 QT----------CNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEA 1234
            +           C     EP +++ A  ++ W  A          N+TWEL  LP++  A
Sbjct: 750  EATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTA 809

Query: 1235 IGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQK 1414
            IGVKWVYK K +  G VQ+YKARLVAKGY+Q+ GIDY E FAPVARL+T+R +I+LAAQ 
Sbjct: 810  IGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQN 869

Query: 1415 QWKIYQLDVK 1444
             WKI+Q+DVK
Sbjct: 870  NWKIHQMDVK 879


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  528 bits (1359), Expect = e-171
 Identities = 260/499 (52%), Positives = 345/499 (69%), Gaps = 18/499 (3%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GL++L++K M+R LP I   + VCEGC+LGKQ
Sbjct: 451  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 511  FKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+IFKKFKA+VEK+SG  IKT+RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 571  VFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 630

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
             ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK+V  KTP EAWS RKP 
Sbjct: 631  VERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPG 690

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KRSKLD+K+EK IF+GY   SKGY++Y+  T+K IISR+++F
Sbjct: 691  VSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750

Query: 893  DEDAAYNWETNQVEKRSI-----NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXX 1057
            DE+  ++W +N+ +         + P+ T E E  S +P   P                 
Sbjct: 751  DEEGEWDWNSNEEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTP 809

Query: 1058 XXRSLREIYQTC----NLTIM------EPDSYEAAAKQEVWVKAXXXXXXXXXXNETWEL 1207
              RS++E+Y+      NLT+       EP  ++ A +++ W  A          N+TWEL
Sbjct: 810  RFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWEL 869

Query: 1208 TDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIR 1387
            T LP   +AIGVKWVYK K N  G V++YKARLVAKGY+Q+ GIDY E FAPVARL+T+R
Sbjct: 870  TSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVR 929

Query: 1388 ALIALAAQKQWKIYQLDVK 1444
             +I+LAAQ +WKI+Q+DVK
Sbjct: 930  LIISLAAQNKWKIHQMDVK 948


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  528 bits (1359), Expect = e-171
 Identities = 260/499 (52%), Positives = 345/499 (69%), Gaps = 18/499 (3%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GL++L++K M+R LP I   + VCEGC+LGKQ
Sbjct: 451  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 511  FKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+IFKKFKA+VEK+SG  IKT+RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 571  VFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 630

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
             ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK+V  KTP EAWS RKP 
Sbjct: 631  VERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPG 690

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KRSKLD+K+EK IF+GY   SKGY++Y+  T+K IISR+++F
Sbjct: 691  VSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750

Query: 893  DEDAAYNWETNQVEKRSI-----NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXX 1057
            DE+  ++W +N+ +         + P+ T E E  S +P   P                 
Sbjct: 751  DEEGEWDWNSNEEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTP 809

Query: 1058 XXRSLREIYQTC----NLTIM------EPDSYEAAAKQEVWVKAXXXXXXXXXXNETWEL 1207
              RS++E+Y+      NLT+       EP  ++ A +++ W  A          N+TWEL
Sbjct: 810  RFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWEL 869

Query: 1208 TDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIR 1387
            T LP   +AIGVKWVYK K N  G V++YKARLVAKGY+Q+ GIDY E FAPVARL+T+R
Sbjct: 870  TSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVR 929

Query: 1388 ALIALAAQKQWKIYQLDVK 1444
             +I+LAAQ +WKI+Q+DVK
Sbjct: 930  LIISLAAQNKWKIHQMDVK 948


>dbj|GAU33542.1| hypothetical protein TSUD_143350 [Trifolium subterraneum]
          Length = 1164

 Score =  521 bits (1341), Expect = e-171
 Identities = 247/473 (52%), Positives = 326/473 (68%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            A  + VDD+ LWHRR GHF+   LK ++  +++ +LP I ++  +C+ C  GKQ R PFP
Sbjct: 447  AFPSNVDDSSLWHRRLGHFSYSTLKQMSSHDLVENLPIIDDVVDMCDVCQFGKQSRLPFP 506

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
                WRA + L+L+HTD+CGPM T S   N+YF+LFIDD+TRM WV+FLR++S VF  F+
Sbjct: 507  VESTWRASEKLQLIHTDVCGPMPTTSLNGNKYFLLFIDDFTRMCWVFFLRQESDVFPAFQ 566

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
             FK  VEK+   +IK +RSD G EYT+ +F  FCE  G++HQ TV Y P+QNGVSERKNR
Sbjct: 567  SFKLMVEKEVDCQIKKLRSDNGNEYTAGEFKVFCEQVGIQHQFTVPYTPQQNGVSERKNR 626

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
            TVME AR +L EKG+PK+FWAEAV+T+VYLLN  PTK ++ KTP EAW  RKPS +HLR+
Sbjct: 627  TVMEMARCLLFEKGIPKTFWAEAVNTSVYLLNLLPTKVLKGKTPFEAWYERKPSVEHLRI 686

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            FGC+CY+H+P  KR KL+ K+   IFLGYS+ SKGYR+Y+L T+K+++SRDV FDE + +
Sbjct: 687  FGCVCYLHVPNVKRDKLETKSVVGIFLGYSSNSKGYRIYNLETKKILVSRDVQFDEFSKW 746

Query: 911  NWETNQVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIYQT 1090
            NWE +Q E  S  +      +++ S D  E  +                  R+L +IY  
Sbjct: 747  NWEKSQTEGSSKVMSTEDSLEDQNSEDEGENYDN-----------FPTRGTRTLDDIYAR 795

Query: 1091 CNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWVYKTKLN 1270
            CN+  +EP  Y  AA  E W  A          N+TW+L D P++++ IGVKWVY+TKLN
Sbjct: 796  CNIATLEPTRYAEAANVEGWKVAMQEEMKMIEKNQTWQLVDKPENQKIIGVKWVYRTKLN 855

Query: 1271 PDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIY 1429
            PDGS+ K KARLV KGY QQ+G+D+S+TFAPVAR DTIR L+ALAA+  WKIY
Sbjct: 856  PDGSINKLKARLVVKGYFQQHGVDFSDTFAPVARHDTIRLLVALAAKLGWKIY 908


>gb|KYP61490.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  523 bits (1346), Expect = e-170
 Identities = 254/484 (52%), Positives = 338/484 (69%), Gaps = 6/484 (1%)
 Frame = +2

Query: 11   AMTAQVDDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFP 190
            A  + V+D++LWH+R GHF+   LK ++  +++++LP I++   +C+ C  GKQ + PFP
Sbjct: 385  AFPSAVNDSFLWHKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFP 444

Query: 191  SGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFK 370
               +WRA + L+LVHTD+CGPM T S   ++YF+LFIDDYTRM+WV+FL++KS VF  F 
Sbjct: 445  KEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFL 504

Query: 371  KFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNR 550
            KFK  VE ++G ++K +RSD G EYT+ +F KFCE  G++HQLTV Y P+QNGVSERKNR
Sbjct: 505  KFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNR 564

Query: 551  TVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRV 730
            TVME AR +L EKGLPK+FWAEAV+T+VYLLN  PTKA++  TP EAW  R PS +HL+V
Sbjct: 565  TVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKV 624

Query: 731  FGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAY 910
            FGC+CY  +P+ KR KLD+K+E  IFLGYS+ SKGYR+Y+ +T+K+++SR+V FDE + +
Sbjct: 625  FGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRW 684

Query: 911  NWETNQVE---KRSI---NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSL 1072
            NWE ++ E   KR +   NL +   E EE + D  + P R                 R L
Sbjct: 685  NWEKSKAEASNKRQLEVDNLQEQNSESEEQNLDDDDFPVRG---------------TRDL 729

Query: 1073 REIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWV 1252
             EIY+ CN+  +EP  Y  AA+ E W  A          N TW+L D P +++ IG+KWV
Sbjct: 730  AEIYERCNVAALEPKEYAEAAELEGWRVAMQEEMNMIEKNNTWQLVDRPINQKVIGLKWV 789

Query: 1253 YKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIYQ 1432
            Y+TKLN DGSV K KARLV KGY QQYG+D+ +TFAPVAR DTIR L+ALAA+  WKIY 
Sbjct: 790  YRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYH 849

Query: 1433 LDVK 1444
             DVK
Sbjct: 850  FDVK 853


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  523 bits (1347), Expect = e-170
 Identities = 257/499 (51%), Positives = 344/499 (68%), Gaps = 18/499 (3%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GL++L++K M+R LP I   + VCEGC+LG Q
Sbjct: 451  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQ 510

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 511  FKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+IFKKFKA+VEK+SG  IKT+RSD G E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 571  VFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 630

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
            +ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK+V  KTP EAWS RKP 
Sbjct: 631  AERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPG 690

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KR+KLD+K+EK IF+GY   SKGY++Y+  T+K IISR+++F
Sbjct: 691  VSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750

Query: 893  DEDAAYNWETNQVEKRSI-----NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXX 1057
            DE+  ++W +N+ +         + P+ T E E  S +P   P                 
Sbjct: 751  DEEGEWDWNSNEEDYNFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTP 809

Query: 1058 XXRSLREIYQTC----NLTIM------EPDSYEAAAKQEVWVKAXXXXXXXXXXNETWEL 1207
              RS++E+Y+      NLT+       EP  ++ A +++ W  A          N+TWEL
Sbjct: 810  RFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWEL 869

Query: 1208 TDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIR 1387
            T LP   +AIGVKWVYK K N  G V++YKARLVAKGY+Q+ GIDY E FAPVARL+T+R
Sbjct: 870  TSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVR 929

Query: 1388 ALIALAAQKQWKIYQLDVK 1444
             +I+LAAQ +WKI+Q+DVK
Sbjct: 930  LIISLAAQNKWKIHQMDVK 948


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
 gb|AAG50765.1|AC079131_10 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  520 bits (1340), Expect = e-169
 Identities = 254/487 (52%), Positives = 339/487 (69%), Gaps = 6/487 (1%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GL++L++K M+R LP I   + VCEGC+LGKQ
Sbjct: 451  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 511  FKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+IFKKFKA+VEK+SG  IKT+RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 571  VFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 630

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
            +ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK+V  KTP EAWS RKP 
Sbjct: 631  AERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPG 690

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KRSKLD+K+EK IF+GY   SKGY++Y+  T+K IISR+++F
Sbjct: 691  VSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750

Query: 893  DEDAAYNWETNQVEKR---SINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXX 1063
            DE+  ++W +N+ +          K    +EE  ++ P TP  +                
Sbjct: 751  DEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSP--------------- 795

Query: 1064 RSLREIYQTCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGV 1243
             +  +I + C     EP  ++ A +++ W  A          N+TWELT LP   +AIGV
Sbjct: 796  -TSSQIEEKC-----EPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGV 849

Query: 1244 KWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWK 1423
            KWVYK K N  G V++YKARLVAKGY+Q+ GIDY E FAPVARL+T+R +I+LAAQ +WK
Sbjct: 850  KWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWK 909

Query: 1424 IYQLDVK 1444
            I+Q+DVK
Sbjct: 910  IHQMDVK 916


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  520 bits (1339), Expect = e-168
 Identities = 257/499 (51%), Positives = 342/499 (68%), Gaps = 18/499 (3%)
 Frame = +2

Query: 2    NDAAMTAQV---DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQ 172
            ND A   ++   +++WLWH RFGH N  GL++L++K M+R LP I   + VCEGC+LGKQ
Sbjct: 451  NDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510

Query: 173  HRQPFPSGKAWRAKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQ 352
             +  FP   + RA+K LEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+
Sbjct: 511  FKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570

Query: 353  VFDIFKKFKAYVEKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGV 532
            VF+IFKKFKA+VEK+SG  IKT+RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV
Sbjct: 571  VFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGV 630

Query: 533  SERKNRTVMETARSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPS 712
            +ERKNRT++E ARSML  K LPK  WAEAV+ AVYLLNR PTK+V  KTP EAWS RK  
Sbjct: 631  AERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSG 690

Query: 713  AKHLRVFGCICYVHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMF 892
              HLRVFG I + H+P +KRSKLD+K+EK IF+GY   SKGY++Y+  T+K IISR+++F
Sbjct: 691  VSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750

Query: 893  DEDAAYNWETNQVEKRSI-----NLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXX 1057
            DE+  ++W +N+ +         + P+ T E E  S +P   P                 
Sbjct: 751  DEEGEWDWNSNEEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTP 809

Query: 1058 XXRSLREIYQTC----NLTIM------EPDSYEAAAKQEVWVKAXXXXXXXXXXNETWEL 1207
              RS++E+Y+      NLT+       EP  ++ A +++ W  A          N+TWEL
Sbjct: 810  RFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWEL 869

Query: 1208 TDLPQDKEAIGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIR 1387
            T LP   + IGVKWVYK K N  G V++YKARLVAKGY Q+ GIDY E FAPVARL+T+R
Sbjct: 870  TSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVR 929

Query: 1388 ALIALAAQKQWKIYQLDVK 1444
             +I+LAAQ +WKI+Q+DVK
Sbjct: 930  LIISLAAQNKWKIHQMDVK 948


>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  519 bits (1337), Expect = e-168
 Identities = 258/490 (52%), Positives = 336/490 (68%), Gaps = 18/490 (3%)
 Frame = +2

Query: 29   DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWR 208
            D +WLWH RFGH N +GL++L++K M+R LP I   + VCEGC+LGKQ R  FP     R
Sbjct: 461  DQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSR 520

Query: 209  AKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYV 388
            A+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+VF+ FKKFKA+V
Sbjct: 521  AQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHV 580

Query: 389  EKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETA 568
            EK+SG  IK +RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV+ERKNRT++E A
Sbjct: 581  EKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMA 640

Query: 569  RSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICY 748
            RSML  K LPK FWAEAV+ AVYL NR PT++V  KTP EAWS RKP   HLRVFG I +
Sbjct: 641  RSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAH 700

Query: 749  VHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETN- 925
            VH+P +KRSKLD+K+EK IF+GY   SKGY++Y+  +RK IISR+V+FDE+  ++W TN 
Sbjct: 701  VHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNC 760

Query: 926  -------QVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIY 1084
                    VE+  +   +   + +ET   PP +P                   RSL+EIY
Sbjct: 761  EDHTFFPCVEEDDV---EQQQQPQETPTTPPTSPNTT--LQDYESSSERMPRFRSLQEIY 815

Query: 1085 QT----------CNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEA 1234
            +           C     EP +++ A  ++ W  A          N+TWEL  LP++  A
Sbjct: 816  EATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTA 875

Query: 1235 IGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQK 1414
            IGVKWVYK K +  G VQ+YKARLVAKGY+Q+ GIDY E FAPVARL+T+R +I+LAAQ 
Sbjct: 876  IGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQN 935

Query: 1415 QWKIYQLDVK 1444
             WKI+Q+DVK
Sbjct: 936  NWKIHQMDVK 945


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  519 bits (1337), Expect = e-168
 Identities = 258/490 (52%), Positives = 336/490 (68%), Gaps = 18/490 (3%)
 Frame = +2

Query: 29   DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWR 208
            D +WLWH RFGH N +GL++L++K M+R LP I   + VCEGC+LGKQ R  FP     R
Sbjct: 461  DQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSR 520

Query: 209  AKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYV 388
            A+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+VF+ FKKFKA+V
Sbjct: 521  AQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHV 580

Query: 389  EKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETA 568
            EK+SG  IK +RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV+ERKNRT++E A
Sbjct: 581  EKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMA 640

Query: 569  RSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICY 748
            RSML  K LPK FWAEAV+ AVYL NR PT++V  KTP EAWS RKP   HLRVFG I +
Sbjct: 641  RSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAH 700

Query: 749  VHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETN- 925
            VH+P +KRSKLD+K+EK IF+GY   SKGY++Y+  +RK IISR+V+FDE+  ++W TN 
Sbjct: 701  VHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNC 760

Query: 926  -------QVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIY 1084
                    VE+  +   +   + +ET   PP +P                   RSL+EIY
Sbjct: 761  EDHTFFPCVEEDDV---EQQQQPQETPTTPPTSPNTT--LQDYESSSERMPRFRSLQEIY 815

Query: 1085 QT----------CNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEA 1234
            +           C     EP +++ A  ++ W  A          N+TWEL  LP++  A
Sbjct: 816  EATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTA 875

Query: 1235 IGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQK 1414
            IGVKWVYK K +  G VQ+YKARLVAKGY+Q+ GIDY E FAPVARL+T+R +I+LAAQ 
Sbjct: 876  IGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQN 935

Query: 1415 QWKIYQLDVK 1444
             WKI+Q+DVK
Sbjct: 936  NWKIHQMDVK 945


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score =  518 bits (1335), Expect = e-168
 Identities = 258/490 (52%), Positives = 335/490 (68%), Gaps = 18/490 (3%)
 Frame = +2

Query: 29   DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWR 208
            D +WLWH RFGH N +GL +L++K M+R LP I   + VCEGC+LGKQ R  FP     R
Sbjct: 450  DQSWLWHLRFGHLNFKGLDLLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSR 509

Query: 209  AKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYV 388
            A+KPLEL+HTD+CGP++  S  ++ YF+LFIDD++R TWVYFL+EKS+VF+ FKKFKA+V
Sbjct: 510  AQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHV 569

Query: 389  EKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETA 568
            EK+SG  IK +RSDRG E+TS +F K+CED G+  QLTV  +P+QNGV+ERKNRT++E A
Sbjct: 570  EKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMA 629

Query: 569  RSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICY 748
            RSML  K LPK FWAEAV+ AVYL NR PT++V  KTP EAWS RKP   HLRVFG I +
Sbjct: 630  RSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAH 689

Query: 749  VHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETN- 925
            VH+P +KRSKLD+K+EK IF+GY   SKGY++Y+  +RK IISR+V+FDE+  ++W TN 
Sbjct: 690  VHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNC 749

Query: 926  -------QVEKRSINLPKLTHEQEETSNDPPETPERAXXXXXXXXXXXXXXXXRSLREIY 1084
                    VE+  +   +   + +ET   PP +P                   RSL+EIY
Sbjct: 750  EDHTFFPCVEEDDV---EQQQQPQETPTTPPTSPNTT--LQDYESSSERMPRFRSLQEIY 804

Query: 1085 QT----------CNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEA 1234
            +           C     EP +++ A  ++ W  A          N+TWEL  LP++  A
Sbjct: 805  EATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTA 864

Query: 1235 IGVKWVYKTKLNPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQK 1414
            IGVKWVYK K +  G VQ+YKARLVAKGY+Q+ GIDY E FAPVARL+T+R +I+LAAQ 
Sbjct: 865  IGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQN 924

Query: 1415 QWKIYQLDVK 1444
             WKI+Q+DVK
Sbjct: 925  NWKIHQMDVK 934


>gb|KYP79141.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 990

 Score =  506 bits (1302), Expect = e-167
 Identities = 248/479 (51%), Positives = 322/479 (67%), Gaps = 7/479 (1%)
 Frame = +2

Query: 29   DDTWLWHRRFGHFNLQGLKILNQKNMMRDLPTIKELDGVCEGCMLGKQHRQPFPSGKAWR 208
            +D WLWH RFGHF+  GL  L++K  +  LP +   +GVCE C +GK+HR+ FP+G +WR
Sbjct: 119  NDDWLWHMRFGHFHFSGLNYLSKKEYVSGLPIVNIPNGVCETCEIGKKHRESFPTGVSWR 178

Query: 209  AKKPLELVHTDICGPMRTPSNEQNRYFILFIDDYTRMTWVYFLREKSQVFDIFKKFKAYV 388
            AKK LE+VH+D+C  +  P++  +RYFI FIDD++R  WVYFL++KS+  D FK FKA+V
Sbjct: 179  AKKLLEIVHSDLC-MVEIPTHGGSRYFITFIDDFSRKAWVYFLKQKSEACDAFKSFKAFV 237

Query: 389  EKQSGHKIKTIRSDRGKEYTSTQFTKFCEDEGVEHQLTVGYAPEQNGVSERKNRTVMETA 568
            EKQSG KIK +R+DRG+EY +     F +  G++HQ+T  Y P+QNGV+ERKNRT+M+  
Sbjct: 238  EKQSGCKIKALRTDRGQEYLAC--ANFFDHHGIQHQMTTRYTPQQNGVAERKNRTIMDMV 295

Query: 569  RSMLMEKGLPKSFWAEAVSTAVYLLNRCPTKAVQDKTPVEAWSRRKPSAKHLRVFGCICY 748
            R ML  K +P+ FWAEAVSTAVY+LNRCPTK+V DKTP EAWS RKPS +HL++FGCI Y
Sbjct: 296  RCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIRHLKIFGCIAY 355

Query: 749  VHIPQQKRSKLDEKTEKCIFLGYSTQSKGYRVYSLSTRKLIISRDVMFDEDAAYNWETNQ 928
             H+P Q R KLD+K EKCIF+GYST SK Y++Y+  T+K+IISRDV FDE+  ++W    
Sbjct: 356  AHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDEEGMWDWSFKA 415

Query: 929  VEKRSINLPKLTHEQEETSNDPPETPE-------RAXXXXXXXXXXXXXXXXRSLREIYQ 1087
             ++  IN P+   E+    N  P+ PE       +                  S  EI  
Sbjct: 416  QKEPVIN-PENYEEENGHVNPTPDEPETSSRPQRQRRLPARLEDYVVGNDNDPSDEEIIN 474

Query: 1088 TCNLTIMEPDSYEAAAKQEVWVKAXXXXXXXXXXNETWELTDLPQDKEAIGVKWVYKTKL 1267
                   EP ++E A+  + W KA          N+TWELTDLP DK+ IGVKWVYKTK 
Sbjct: 475  FALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQTWELTDLPADKKPIGVKWVYKTKY 534

Query: 1268 NPDGSVQKYKARLVAKGYAQQYGIDYSETFAPVARLDTIRALIALAAQKQWKIYQLDVK 1444
               G + + KARLV KGY Q+ GIDY E FAPVARLDTIR LI+L+AQ  WKI+Q+DVK
Sbjct: 535  KSSGEIDRLKARLVVKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQMDVK 593