BLASTX nr result
ID: Rehmannia29_contig00005715
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00005715
(4451 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense] 1035 0.0
gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan] 996 0.0
gb|PNY17448.1| hypothetical protein L195_g014191 [Trifolium prat... 989 0.0
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 987 0.0
gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 986 0.0
dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subte... 986 0.0
gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifo... 984 0.0
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 981 0.0
gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 976 0.0
gb|AAO23078.1| polyprotein [Glycine max] 974 0.0
gb|OMO55704.1| reverse transcriptase [Corchorus capsularis] 972 0.0
dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subt... 972 0.0
gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 971 0.0
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt... 970 0.0
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt... 970 0.0
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 969 0.0
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt... 964 0.0
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 964 0.0
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 962 0.0
dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subte... 961 0.0
>gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]
Length = 1514
Score = 1035 bits (2677), Expect = 0.0
Identities = 531/940 (56%), Positives = 666/940 (70%), Gaps = 1/940 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G+ V+L G + PIT Q++ +I + ++++ T T +
Sbjct: 477 GKSVRLVGETRSNPSPITFAQMRTIIEAGDYRSLFQLTSNPSTSPITAKSSSDDLATLEA 536
Query: 1021 DVPDPMKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKL 1200
+P K +L+ + ++F+ + LPP R+VDHRIHLQP S P+NVRPYRYPYFQK ME L
Sbjct: 537 SLPLSAKGLLLHHHKVFSTTSQLPPYRSVDHRIHLQPGSSPVNVRPYRYPYFQKDAMENL 596
Query: 1201 VKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDE 1380
V+EMLE G IR S+SPYSSPVLLV+KKDG++RFCVDYRALN++ +KD+FPIPTIDELLDE
Sbjct: 597 VQEMLECGYIRSSNSPYSSPVLLVRKKDGSWRFCVDYRALNSLTIKDRFPIPTIDELLDE 656
Query: 1381 LGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQ 1560
LG A F KLDLR+GY+QIRM RD++KTAFRT +GHYEF+VMPFGLTNAPSTFQ+AMN
Sbjct: 657 LGGAVVFLKLDLRAGYHQIRMDSRDIHKTAFRTHNGHYEFVVMPFGLTNAPSTFQSAMND 716
Query: 1561 VFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYL 1740
VF FLR+FV VFFDDILIY+ N+ HV H++QVL ++ ++F+ K SKC F Q VEYL
Sbjct: 717 VFRPFLRRFVTVFFDDILIYSHNIHEHVIHLQQVLQQMEDKQFFAKASKCQFFQQQVEYL 776
Query: 1741 GLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLC 1920
G IV V AD +K++AM WP PK +KQLRGFLGLTGYY RF+ YATIAAPLT+LL
Sbjct: 777 GHIVSNEGVRADPSKVSAMHNWPIPKNVKQLRGFLGLTGYYHRFVAHYATIAAPLTELLK 836
Query: 1921 KDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSF 2100
KD FVW+ +A AF LKQ M + PVL LPDF+++FVVETDASNVG+G VLMQ HP++F
Sbjct: 837 KDNFVWSADAQKAFEMLKQTMTKTPVLHLPDFSKQFVVETDASNVGVGGVLMQDNHPIAF 896
Query: 2101 FSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQ 2280
FSKKLG KMR AS Y++EL AI E+V KWRQYLLGR F++RTDHKS++EL QVV TP+Q
Sbjct: 897 FSKKLGPKMRGASAYLRELRAIVEAVTKWRQYLLGRHFLVRTDHKSLRELLTQVVQTPDQ 956
Query: 2281 QIYIHKLMGYHFRIEFRSGRTNLAADALSR-VEEETGVEELSDAAQNFQLISQISCDLLN 2457
Y+ KL+G+ F IE+++G TN ADALSR EEE +L+ ++ F D+L
Sbjct: 957 HHYLRKLLGFSFTIEYKAGITNTVADALSRQFEEELSTLQLALSSGQF--------DILQ 1008
Query: 2458 DLRRENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHST 2637
LR+EN+ +L H QV D G EL +
Sbjct: 1009 QLRQENSRFDDLLALHK-----------QVHD-----------GTGKELGYEVKD----- 1041
Query: 2638 PMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPAL 2817
GH GI RTL R++A F W GMR DV+ FV++C +CQ +KYST PP GLLQPL +P
Sbjct: 1042 ---GHAGIDRTLRRLSANFVWDGMRHDVKTFVSQCFVCQTVKYSTTPPNGLLQPLELPER 1098
Query: 2818 VWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHG 2997
VW+++ +DFI GL G ILVV+DR K AHFGALPT TA + AELFT M+VKLHG
Sbjct: 1099 VWEDVALDFIVGLPMSKGNTSILVVIDRFTKYAHFGALPTHHTATKVAELFTNMIVKLHG 1158
Query: 2998 FPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQN 3177
P I+SDRDPIF S FW++L K GT L S++YHPQTDGQTEV NR +EQYLR F+ +
Sbjct: 1159 IPRTIVSDRDPIFTSRFWQELFKLMGTKLKMSSSYHPQTDGQTEVTNRYVEQYLRAFSAD 1218
Query: 3178 QPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNR 3357
PK+W + L WAEY YNT++HS+ MTPFQA+YGR PP IP+Y+ + +QAVD L R
Sbjct: 1219 YPKKWGRFLSWAEYHYNTSHHSAINMTPFQAVYGRPPPTIPHYVRGNSKIQAVDGDLLTR 1278
Query: 3358 AELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRR 3537
E+L+ LK+NL +AQ+RMVQ+AN R +VQF VGD VLVKLQPYRQ +VA R N K+ RR
Sbjct: 1279 DEILQHLKHNLTRAQHRMVQQANKKRTDVQFAVGDLVLVKLQPYRQATVAVRLNHKIARR 1338
Query: 3538 YYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKG 3657
Y+GPF +L++VG VAY+LGLP ES+IHP FHVSLL+ FKG
Sbjct: 1339 YFGPFPILERVGTVAYKLGLPSESRIHPTFHVSLLRAFKG 1378
Score = 149 bits (377), Expect = 2e-32
Identities = 68/191 (35%), Positives = 115/191 (60%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVD 445
++ L+ E+R+++++GLCF+CD+K+ NHRCK + +I+ +E
Sbjct: 285 IKWLSPTEWRERRDKGLCFSCDEKFHTNHRCKNRVMIMCGDEGEDDDVTPPITDVIEEDP 344
Query: 446 TITADVSSLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAI 625
+ SL++L NP R+ + ++VLID+GS +NF++ + +++GL
Sbjct: 345 PDESPEVSLHTLTNPVNPCIFRILAKHVNETLEVLIDTGSNNNFVQEGLVKKLGLPVEPA 404
Query: 626 TQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTH 805
+F+VY+GNG L+C C VPL +QG F VDL++LPI G D+VLG+QWL+ LG H
Sbjct: 405 KRFKVYMGNGQHLVCHQKCVGVPLVMQGHLFEVDLFVLPICGLDIVLGMQWLRTLGPCLH 464
Query: 806 EYSTMSMEFQW 838
+++ ++M+F W
Sbjct: 465 DHNALTMDFTW 475
>gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
Length = 1510
Score = 996 bits (2575), Expect = 0.0
Identities = 510/946 (53%), Positives = 661/946 (69%), Gaps = 4/946 (0%)
Frame = +1
Query: 850 VKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVP 1029
V LQG S + L+ L H ++E+Y + LS VE ++ ++D+P
Sbjct: 456 VTLQGEKSRPAAMSQFHHLKRLNHTQGIAEVYTLQLLS--------SFVETDQ--WKDIP 505
Query: 1030 D---PMKAVLMEY-SELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEK 1197
D P A+L+ Y ++FA+PTGLPPPR+ +HRI L S P+ VRPY+YP+ QK ++E
Sbjct: 506 DNVDPEIALLLHYYRQIFAKPTGLPPPRSQNHRIPLLQGSGPVKVRPYKYPHSQKQQIEL 565
Query: 1198 LVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLD 1377
++KEMLE GII PS SP+SSP++LVKKKDG++RFC DYRALNAI VKD FPIPT++ELLD
Sbjct: 566 MIKEMLEDGIIAPSSSPFSSPIILVKKKDGSWRFCTDYRALNAITVKDSFPIPTVEELLD 625
Query: 1378 ELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMN 1557
EL A+YF+KLDLR+GY+QI + D YKTAFRT GHYE+LVMPFGLTNAP+TFQ MN
Sbjct: 626 ELFGAKYFSKLDLRAGYHQILVQEEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQNLMN 685
Query: 1558 QVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEY 1737
+F LR+ V+VFFDDIL+Y+S+ H++H++QVLD L K Y K+SKC+FG VEY
Sbjct: 686 DIFQGLLRKSVLVFFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEY 745
Query: 1738 LGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLL 1917
LG +V V + +K+ A+ +WP PKT+KQLRGFLGLTGYYRRFI+GYA+IA PLTDLL
Sbjct: 746 LGHVVSGDGVSMETSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLL 805
Query: 1918 CKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLS 2097
KD F W++EA+ AF+ LKQ + APVLSLPDF++ FV+ETDAS GIGAVL Q HP++
Sbjct: 806 KKDNFKWSNEADAAFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIA 865
Query: 2098 FFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPE 2277
FFSKKL +M S Y +E YAITE++ K+R YLLG FIIRTD KS+K L Q + TPE
Sbjct: 866 FFSKKLSNRMTKQSAYTREFYAITEAIAKFRHYLLGHRFIIRTDQKSLKSLLDQTLQTPE 925
Query: 2278 QQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLN 2457
QQ ++HK +GY F IE++ G NLAADALSR SD L+ QI L +
Sbjct: 926 QQAWLHKFLGYDFSIEYKPGTENLAADALSRSFFMASAVTASD------LVHQIKAALGS 979
Query: 2458 DLRRENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHST 2637
D + + A A++ P + DGLLF+K R V+ ++++ILQEFHS+
Sbjct: 980 DTALQ---PILTAHSQGKALSAP----YSFLDGLLFWKGRIVVPNVPAIQNQILQEFHSS 1032
Query: 2638 PMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPAL 2817
P+ GH GI RT AR+AA F+W GM KD++ FV +C +CQQ K +T PAGLLQPLP+P
Sbjct: 1033 PLGGHSGIARTFARVAAQFFWPGMNKDIKNFVQQCCVCQQAKTATVLPAGLLQPLPIPTQ 1092
Query: 2818 VWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHG 2997
+W++I+MDFI GL G+ VI V+VDRL K AHF L + F ++R A++F VVKLHG
Sbjct: 1093 IWEDISMDFIVGLPPAEGYTVIFVIVDRLSKYAHFAPLKSDFNSKRVADVFLHTVVKLHG 1152
Query: 2998 FPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQN 3177
FP+ I+SDRD +F S FW+ LLK SGTTL STAYHPQ+DGQTE +N+CLE YLRCFT
Sbjct: 1153 FPNSIVSDRDKVFTSTFWQHLLKLSGTTLKLSTAYHPQSDGQTEALNKCLEMYLRCFTHE 1212
Query: 3178 QPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNR 3357
+PK WIK L WAE+ YNT++H SAQM+PF+ +YGR PP + Y ++ E+L R
Sbjct: 1213 KPKDWIKFLPWAEFWYNTSFHHSAQMSPFKVVYGRDPPTLVKYSHSATDPPSIQEMLLQR 1272
Query: 3358 AELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRR 3537
+L LK NL+ AQ RM + A+ R +F+ G+ VLVKLQPYRQ S+A R NQKL R
Sbjct: 1273 DRVLAQLKVNLMLAQQRMKKYADQKRLHKEFVEGEMVLVKLQPYRQHSLALRKNQKLGLR 1332
Query: 3538 YYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETV 3675
Y+GPF + ++G VAY+L LP +KIHPVFH+S LK F+G T+TV
Sbjct: 1333 YFGPFPIQKRIGSVAYKLLLPDYAKIHPVFHISQLKQFRG-VTDTV 1377
Score = 122 bits (307), Expect = 4e-24
Identities = 71/246 (28%), Positives = 121/246 (49%)
Frame = +2
Query: 95 SNRPNNSLITQPNTLHAKTESVSPRTTPSLQPNFRSPSQHXXXXXXXXXXXXXXXXXVRR 274
S R S +T+ + A +S T P+ QP +P+ VR+
Sbjct: 215 SFRSRQSFVTRNTSHSAGNQSY---TNPAQQPLLNTPN-------IKPAAFPNRNTAVRK 264
Query: 275 LTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVDTIT 454
++ E + ++ERGLCF CD++++ANHRC K +L S + D +
Sbjct: 265 MSPAEMQSRRERGLCFTCDERFSANHRCPNKQYLLLQVEDEEELEETTNVDSTALEDELE 324
Query: 455 ADVSSLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAITQF 634
+S N+L G ++R G + ++ +L+DSGS+ NF++PK+A + L
Sbjct: 325 HHLS-FNALKGVATVGTMRFTGSIAGKEVHILLDSGSSDNFLQPKLAHYLKLPIEPAAGL 383
Query: 635 RVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYS 814
+V VGNG SL + + + +QGQ + +Y+L + G D+VLG WL LG +Y
Sbjct: 384 QVMVGNGSSLSTEGKILNLQVQVQGQVLQLPVYLLSVSGADLVLGAAWLATLGPHIADYG 443
Query: 815 TMSMEF 832
+++++F
Sbjct: 444 SLTIKF 449
>gb|PNY17448.1| hypothetical protein L195_g014191 [Trifolium pratense]
Length = 1530
Score = 989 bits (2557), Expect = 0.0
Identities = 490/944 (51%), Positives = 659/944 (69%), Gaps = 1/944 (0%)
Frame = +1
Query: 856 LQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDP 1035
+ G+ T P + NQ ++H + ++ + + + ST + + + + +
Sbjct: 493 ITGTKPATATPASYNQFNRMLHTNSIATFHSITIIPSQDNSTHPPIPDI--QAIQSLHSD 550
Query: 1036 MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEML 1215
++AVL Y+ +F QP GLPP R DH IHL P + PIN++PYRYP++QK M ++ +ML
Sbjct: 551 LQAVLQPYTHIFNQPQGLPPNRPHDHHIHLTPAAPPINIKPYRYPHYQKEAMTSIILDML 610
Query: 1216 EQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRAR 1395
++G+I+PS+SPYSSPVLLVKKKDG++RFCVDYRALNAI +KD+FPIPTIDEL+DEL +
Sbjct: 611 KEGLIQPSNSPYSSPVLLVKKKDGSWRFCVDYRALNAITIKDRFPIPTIDELIDELHGSA 670
Query: 1396 YFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVF 1575
FTK+DLRSGY+QIR+ P D KT FRT DGHYEFLVMPFGLTNAPSTFQAAMN + F
Sbjct: 671 VFTKIDLRSGYHQIRLAPEDTPKTGFRTMDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPF 730
Query: 1576 LRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVK 1755
LR+F +VFFDDIL+Y+ + ++H+ H++QVL L + +FY K SKC FG ++VEYLG I+
Sbjct: 731 LRKFALVFFDDILVYSPDWQTHLVHLQQVLQSLAQNQFYAKFSKCQFGVSSVEYLGHIIS 790
Query: 1756 EGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFV 1935
V AD +KI M +WP PK + LR FLGLTG+YRRF+ YATIA+PLTDLL +AF
Sbjct: 791 AEGVRADPSKIQTMVDWPTPKNITALRAFLGLTGFYRRFVLNYATIASPLTDLLKANAFT 850
Query: 1936 WTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKL 2115
W++ AN AF LK M P+L+LPDF+ F V TDAS +GAVL QK PL+FFSKKL
Sbjct: 851 WSEAANAAFNSLKTAMSNLPLLTLPDFSLPFEVTTDASIHAVGAVLSQKSKPLAFFSKKL 910
Query: 2116 GVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIH 2295
++ A+STYI+ELYA+TE++ KWRQYLLG F I TDHKS+K L Q + TPEQQ ++
Sbjct: 911 SPRLSASSTYIRELYALTEAIKKWRQYLLGSPFKIFTDHKSLKSLMTQTIQTPEQQKWLT 970
Query: 2296 KLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRREN 2475
KL+GY + I ++ G+ N+ ADALSRVEE E LI+ L+ L+
Sbjct: 971 KLLGYTYEIHYKPGKENVVADALSRVEEPPIEGEC-------VLITFPISSLITQLQVFF 1023
Query: 2476 ATDLELARWHDHAINEPRVSD-FQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGH 2652
+T+ + A+N+P++ FQ+K GLL+FK+R I ++L + +LQEFHS+P GH
Sbjct: 1024 STNTAGTKLMQKAVNDPKMQQKFQIKGGLLYFKNRLFIPIEADLITPLLQEFHSSPAGGH 1083
Query: 2653 PGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEI 2832
GI+ TLAR++A FYW GM KDV+ FV C +CQ KYSTQPP GLLQPLP+P VW++I
Sbjct: 1084 SGIQATLARLSANFYWPGMHKDVKHFVNACSVCQHNKYSTQPPYGLLQPLPLPQQVWEDI 1143
Query: 2833 TMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKI 3012
+MDFIT L + I V+VDRL K AHF ALPT FTA A +F + +L G P I
Sbjct: 1144 SMDFITHLPPTHNRSCIWVIVDRLTKFAHFIALPTSFTAASLAPIFIAEIYRLPGAPKTI 1203
Query: 3013 ISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRW 3192
+SDRD +F+S FW+ L GT+L S++YHPQ+DGQTEV+NRCLE YLRCF ++P+ W
Sbjct: 1204 VSDRDRVFVSQFWRALFHHLGTSLAFSSSYHPQSDGQTEVLNRCLETYLRCFVSDEPQLW 1263
Query: 3193 IKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLR 3372
++ L AE+ YNT++HS+ M+PF+ALYGR PP + +Y P + + +DE+L + ++L+
Sbjct: 1264 LRFLALAEFWYNTSFHSAIGMSPFEALYGRKPPNLVHYTPGTSKINNLDELLTQKTQILK 1323
Query: 3373 ILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPF 3552
+LK NL +AQNRM +AN HR++ F VG V +KLQPYRQ SV R + KL +R+YGPF
Sbjct: 1324 VLKENLAKAQNRMATQANRHRQDHNFEVGQWVYLKLQPYRQQSVHHRHSHKLAKRFYGPF 1383
Query: 3553 KVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTL 3684
++L ++G VAY L LP S++HPVFHVSLLK GE T ++ +
Sbjct: 1384 RILKRIGKVAYELELPAASRVHPVFHVSLLKLCIGEPTTQITPI 1427
Score = 137 bits (346), Expect = 1e-28
Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 34/269 (12%)
Frame = +2
Query: 128 PNTLHAKTESVSPRTTPS-----LQPNFRSPSQHXXXXXXXXXXXXXXXXXVRRLTHEEY 292
P T K S P P+ L PN +PS ++RL+ E
Sbjct: 232 PTTPFQKNTSTKPPLLPNPPSKLLSPNTPTPSSFP----------------IKRLSPAEM 275
Query: 293 RDKKERGLCFNCDQKYTANHRCKGK--FLILFXXXXXXXXXXXXXXXSVEVVDT--ITAD 460
+ ++ +GLCFNCD+++ HRCK K L++ + E+ D I +
Sbjct: 276 QIRRAKGLCFNCDERFHTGHRCKHKQFLLLIHEDEPDPNPDPLYALLTSEIPDPAQIPSP 335
Query: 461 VS-------------------------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGS 565
S SL + G +PR+LR + + + VL+DSGS
Sbjct: 336 TSLLTRKLDPDPTPPPHQQNESELFQLSLQAATGQPSPRTLRFTATIHNHPVTVLVDSGS 395
Query: 566 THNFIKPKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPI 745
+HN I+P++A + L ++ F V VGNGD L C LCA +P+++ F + LY+LPI
Sbjct: 396 SHNIIQPRIASFLNLPIQPLSSFSVMVGNGDFLHCTGLCADIPISVNKHTFNLSLYVLPI 455
Query: 746 EGPDVVLGIQWLQGLGKVTHEYSTMSMEF 832
+G DVVLG+QWLQ LG +++ SM+F
Sbjct: 456 QGADVVLGVQWLQTLGPFVSDFTIPSMQF 484
>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1494
Score = 987 bits (2552), Expect = 0.0
Identities = 496/955 (51%), Positives = 654/955 (68%), Gaps = 1/955 (0%)
Frame = +1
Query: 859 QGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDP- 1035
QG S+ + L+QLQ L D ++ + + T L+ + H PDP
Sbjct: 449 QGDTSSVTSTLNLHQLQRLTRSDTEAQFFSLKVFD----PTQESLILPSTPH----PDPR 500
Query: 1036 MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEML 1215
+ +L Y+ LF +P LPPPR DH I+L PN+ P+NVRPYRYP+ QK E+E V +ML
Sbjct: 501 IHKLLHHYNHLFTEPKQLPPPRPTDHHINLIPNATPVNVRPYRYPHAQKTEIENQVAKML 560
Query: 1216 EQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRAR 1395
G I+PS SP+SSPVLL+KKKDGT+R CVDYRALNAI V+D+FP+PTIDELLDELG AR
Sbjct: 561 NTGWIQPSTSPFSSPVLLLKKKDGTWRMCVDYRALNAITVRDRFPLPTIDELLDELGEAR 620
Query: 1396 YFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVF 1575
F+KLDL SG++QIR+ P D+ KTAFRT GHYE+ VMPFGL NAP+TFQA MN++F
Sbjct: 621 IFSKLDLTSGFHQIRVAPEDIAKTAFRTHAGHYEYCVMPFGLCNAPATFQATMNELFRPL 680
Query: 1576 LRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVK 1755
LR+ VIVFFDDIL+++S+L+ H++H+ QV L + +F++K+SKC+F Q + YLG +V
Sbjct: 681 LRKTVIVFFDDILVFSSSLDIHLQHLEQVFSVLSQHQFHLKISKCSFCQPQIAYLGHVVA 740
Query: 1756 EGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFV 1935
G V D KI A+ +WP PKT+K LRGFLGL+G+YR+F+RGYA +A PLT LL KDAF
Sbjct: 741 AGTVAPDPAKIQAIIDWPPPKTVKGLRGFLGLSGFYRKFVRGYAALALPLTQLLRKDAFK 800
Query: 1936 WTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKL 2115
W+ E A LKQ + APVL LP F E F+V+TDAS +GAVL+Q HPL++FSK
Sbjct: 801 WSQEEQKALETLKQALATAPVLGLPKFDEPFIVQTDASGKAMGAVLLQGEHPLAYFSKVF 860
Query: 2116 GVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIH 2295
+M ASTY++EL+A+T +V +WRQYLLG +FII+TDHKS+KEL QV+ TPEQQ Y+
Sbjct: 861 CPRMMKASTYLRELHAVTSAVKRWRQYLLGHYFIIQTDHKSLKELLTQVIQTPEQQFYLS 920
Query: 2296 KLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRREN 2475
KL+GYH+ I+++ G TN ADALSR + + ++ + F I+++ DL D
Sbjct: 921 KLLGYHYDIQYKPGSTNTVADALSRSLDPSDASIMALSVPQFVFINELKQDLEAD---ST 977
Query: 2476 ATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHP 2655
+L D A N + VK+GL+ ++ R I S KS +L+EFH TP+ GH
Sbjct: 978 FQELRACIETDPAGN----PGYAVKNGLILYQGRIWISPTSHYKSLLLKEFHETPIGGHA 1033
Query: 2656 GIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEIT 2835
GI +TL R+AA FYW MRK+V++F+A C ICQQ KYST P GLLQPLP+P+ VW++I+
Sbjct: 1034 GIIKTLKRLAANFYWSDMRKEVKQFIASCVICQQTKYSTAKPGGLLQPLPIPSNVWEDIS 1093
Query: 2836 MDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKII 3015
MDF+TGL + NG+ VILVVVDR K+ H GALP FTA + AELF MV K+HG P I+
Sbjct: 1094 MDFVTGLPQSNGYSVILVVVDRFSKAVHLGALPAQFTAYKVAELFINMVCKIHGLPRSIV 1153
Query: 3016 SDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWI 3195
SDRDPIF+S FW L K SGT L S++YHPQTDGQTEV NR +EQYLR F +P W
Sbjct: 1154 SDRDPIFISKFWADLFKFSGTLLRMSSSYHPQTDGQTEVTNRTIEQYLRAFVHAKPSIWF 1213
Query: 3196 KLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRI 3375
+ L WAEY YNT Y++S+ ++PFQ ++G+ PP IP+Y ++V A D +L +RA +L +
Sbjct: 1214 RFLPWAEYHYNTAYNTSSGLSPFQVMFGKPPPSIPSYAIGSSSVDACDLLLSDRAAILEL 1273
Query: 3376 LKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFK 3555
L+ NL++AQ M A+ HRREV + G V VKLQPYRQ S+ KL++R+YGPF+
Sbjct: 1274 LRKNLLKAQQVMKHNADAHRREVNYDAGTWVYVKLQPYRQTSLTGTKYNKLSKRFYGPFR 1333
Query: 3556 VLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTLRRRVF*TSPSIS 3720
++++VG VAY+L LP SKIH VFH S+LKP G V L P +S
Sbjct: 1334 IIERVGKVAYKLELPSYSKIHNVFHCSVLKPHIGSIPTVVDDLPHDAVDNHPLVS 1388
Score = 150 bits (380), Expect = 9e-33
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 5/237 (2%)
Frame = +2
Query: 137 LHAKTESVSPRTTPSLQPNFRSPSQHXXXXXXXXXXXXXXXXXVRRLTHEEYRDKKERGL 316
+ A +SP T +PNF P + R L+ E +++E+GL
Sbjct: 215 IKASRSKLSPAYTAPSRPNFNLPGR----PAPGLLPAPPSKPRFRHLSEPELAERREKGL 270
Query: 317 CFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVDTITADVS-----SLNSL 481
CFNCDQK++ HRC G+ +L ++++ DT D + SL++L
Sbjct: 271 CFNCDQKWSKQHRCGGRTFLLLADEEDEEVDPSQLESTIDI-DTSPPDDTPQAQLSLHAL 329
Query: 482 AGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAITQFRVYVGNGDS 661
AG+ + R++G++ + + +L+D GSTHNFI+ VA +GL + RV VG+G
Sbjct: 330 AGSHATDTFRVEGQILKQPVNILVDGGSTHNFIQSSVASALGLQHSPTPSLRVMVGSGQE 389
Query: 662 LICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYSTMSMEF 832
L+C +C V + +Q F VDLY+L + G +VVLG QWL+ LG V +Y T++M+F
Sbjct: 390 LVCSHVCLGVQVVIQNHHFTVDLYVLGLRGAEVVLGAQWLKQLGPVLMDYHTLTMKF 446
>gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1502
Score = 986 bits (2550), Expect = 0.0
Identities = 495/938 (52%), Positives = 648/938 (69%), Gaps = 1/938 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G ++LQG L I+ +Q++ LIH D +S + V L + +L +E
Sbjct: 469 GATIRLQGERDGGLHMISAHQVERLIHTDSISSFFHVQMLPV-------ELPSNQKE--- 518
Query: 1021 DVPDPMKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKL 1200
P P+ +L +++ LF P LPPPR +DH IHL P S P+NVRPYRYPYFQK E+EK
Sbjct: 519 --PPPITELLQQFNHLFTPPASLPPPRQIDHSIHLLPQSAPVNVRPYRYPYFQKQEIEKQ 576
Query: 1201 VKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDE 1380
V ML+ G+IR S SP+SSPVLLVKKKDGT+RFCVDYRALNAI VKD+FPIPT+DELLDE
Sbjct: 577 VSAMLDSGVIRASTSPFSSPVLLVKKKDGTWRFCVDYRALNAITVKDRFPIPTVDELLDE 636
Query: 1381 LGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQ 1560
LG A +F+KLDL GY+QI M DV KTAFRT GH+EF+VMPFGL NAPSTFQA MN
Sbjct: 637 LGGASWFSKLDLLQGYHQILMKETDVEKTAFRTHTGHFEFMVMPFGLCNAPSTFQATMNA 696
Query: 1561 VFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYL 1740
+F FLR+F+IVFFDDILIY+S LE HV H+ Q L L + +F +K SKC F Q +EYL
Sbjct: 697 LFQPFLRKFIIVFFDDILIYSSTLEDHVLHLAQTLQTLSEAQFVLKRSKCVFAQRQIEYL 756
Query: 1741 GLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLC 1920
G IV V K+ A+ +WP PK+++ LRGFLGL G+YRRFI+GYATIA+ LT LL
Sbjct: 757 GHIVSIKGVEPIAAKVQAILQWPIPKSVRALRGFLGLAGFYRRFIKGYATIASALTQLLK 816
Query: 1921 KDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSF 2100
KD F W EA +AF LK+ + +APVL LPDFT F VETDAS VG+GAVL Q+GHP++F
Sbjct: 817 KDCFGWNLEAQLAFDNLKRAISQAPVLVLPDFTLPFTVETDASGVGMGAVLSQQGHPIAF 876
Query: 2101 FSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQ 2280
FSK KM+ ASTY++EL+AIT +V KWRQYLLG F I TDH+S+KEL QV+ TPEQ
Sbjct: 877 FSKPFCPKMQRASTYVRELFAITTAVKKWRQYLLGHKFKILTDHRSLKELMSQVIQTPEQ 936
Query: 2281 QIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLND 2460
Q+Y+ +L+GY + I++RSG++N+ ADALSR+ E L+ +F I Q
Sbjct: 937 QMYLARLIGYEYTIQYRSGQSNVVADALSRIAESEPASLLNLTVPHFTFIQQ-------- 988
Query: 2461 LRRENATDLE-LARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHST 2637
L+RE +T+ E L++ D N S+F + GL+ +K + + + S +L EFH T
Sbjct: 989 LKRELSTNSEFLSKSSDIQANPLDHSEFTLVSGLIMYKGKIWLPKSSSFLPTLLAEFHQT 1048
Query: 2638 PMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPAL 2817
P GH G+ +T ARI+ F W G+++DV+ FVA C CQ +KY + PAGLL PLP+P
Sbjct: 1049 PTGGHMGVTKTFARISDNFIWAGLKEDVQRFVAACIDCQHIKYEARKPAGLLCPLPIPNG 1108
Query: 2818 VWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHG 2997
W+E+++DFI GL G+ IL VVDR K H G L + FTA + A LF EMV KLHG
Sbjct: 1109 PWEELSLDFIVGLPPYCGYTTILTVVDRFSKGIHLGMLQSHFTAHKVATLFMEMVGKLHG 1168
Query: 2998 FPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQN 3177
P ++SDRDP+F+S+FW++L K SGT L S++YHPQ+DGQTEV+NR +EQYLR F
Sbjct: 1169 MPKSLVSDRDPLFMSHFWQELFKLSGTKLRMSSSYHPQSDGQTEVLNRVVEQYLRAFVHQ 1228
Query: 3178 QPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNR 3357
+P W K L WAE+SYNT+ HS ++P++ YG+ PP IP+Y+ + ++AVD++LQNR
Sbjct: 1229 KPSSWGKYLMWAEWSYNTSRHSGTGLSPYEITYGKPPPSIPHYLRGTSLIEAVDDMLQNR 1288
Query: 3358 AELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRR 3537
++ +LK L +AQ M A+ +RR VQF +GD V+VKL+PYRQ + ++ KL +R
Sbjct: 1289 DTMITLLKQKLEKAQKNMKYFADKNRRPVQFEIGDWVMVKLRPYRQSTAKDMAHSKLAKR 1348
Query: 3538 YYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPF 3651
+YGPF++ DK+G AYRL LP S+IHPVFH S+LKPF
Sbjct: 1349 FYGPFQITDKIGTAAYRLDLPETSRIHPVFHCSVLKPF 1386
Score = 148 bits (374), Expect = 5e-32
Identities = 72/195 (36%), Positives = 112/195 (57%), Gaps = 6/195 (3%)
Frame = +2
Query: 269 RRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVDT 448
+RL+ E ++E+GLCFNCD+K+ H+C +F IL S D
Sbjct: 273 KRLSPTEMAQRREKGLCFNCDEKFRPGHKCSSRFFILITDDDIDPDLTHIDPNSAAQPDP 332
Query: 449 ITADVS------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGL 610
D+ S ++L+G P +LRL GR+ ++ +L+D GSTHNF++ ++ + +GL
Sbjct: 333 -EPDLEPSQAQISFHALSGHLAPETLRLAGRIAHQRVHILMDGGSTHNFLQERLVKSLGL 391
Query: 611 STTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGL 790
RV VGNG L C +C V L +QG F+VDL+ILPI G D+VLG+QW++ L
Sbjct: 392 KVQPTAGLRVMVGNGTLLDCNQICPGVTLHIQGHTFVVDLHILPISGADLVLGVQWMKSL 451
Query: 791 GKVTHEYSTMSMEFQ 835
G + +Y+ ++M+F+
Sbjct: 452 GPILVDYNALTMQFK 466
>dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subterraneum]
Length = 1358
Score = 986 bits (2548), Expect = 0.0
Identities = 495/938 (52%), Positives = 654/938 (69%), Gaps = 2/938 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G+ + L G L ++QL L+ D + +H +S STIN +
Sbjct: 426 GQQIHLTGVPKGNLEEANIHQLHRLLSTDAIDTFLHLHLISPE--STINPPTPSH----- 478
Query: 1021 DVPDP-MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEK 1197
P+P + +L +S LF P+ LPP R +DH+I L PNS P+NVRPYRYP FQK E+E
Sbjct: 479 --PEPRVHDLLSNFSSLFQPPSHLPPQRPIDHKIPLLPNSPPVNVRPYRYPQFQKKEIEN 536
Query: 1198 LVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLD 1377
+K+ML G+I+ S S +SSPVLLV+KKDGT+RFCVDYRALNA+ KD+FPIP IDELLD
Sbjct: 537 QIKDMLNNGLIQHSSSAFSSPVLLVRKKDGTWRFCVDYRALNAVTSKDRFPIPAIDELLD 596
Query: 1378 ELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMN 1557
EL ++F+KLDLRSGY+QIRM D+YKTAFRT GHYEFLVMPFGL NAPSTFQ+ MN
Sbjct: 597 ELYGTKWFSKLDLRSGYHQIRMARGDIYKTAFRTHQGHYEFLVMPFGLCNAPSTFQSTMN 656
Query: 1558 QVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEY 1737
+F FLR+FVIVFFDDIL+Y+ L+SH++H+ V CL + F +K SKC+F QT++EY
Sbjct: 657 LIFEPFLRRFVIVFFDDILVYSPTLDSHLQHLELVFQCLLENDFRLKASKCSFAQTSIEY 716
Query: 1738 LGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLL 1917
LG IV + V D +KI+AM WP P +KQLRGFLGLTG+YR+F+R YA++AAPLT LL
Sbjct: 717 LGHIVSDEGVGPDPSKISAMISWPAPVNIKQLRGFLGLTGFYRKFVRNYASLAAPLTALL 776
Query: 1918 CKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLS 2097
DAF+WT++A AF LK+ M EAPVL LP+F E+FV+ETDAS +G+GAVL+Q HP+
Sbjct: 777 KHDAFLWTEDAQKAFEGLKKAMSEAPVLGLPNFEEKFVLETDASGLGMGAVLIQNNHPIC 836
Query: 2098 FFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPE 2277
+FSK+ +M ASTY++EL AIT +V KWR YLLG F I TD +S++EL QV+ TPE
Sbjct: 837 YFSKQFCPRMVQASTYVRELCAITTAVKKWRTYLLGNTFTIFTDQRSLRELMTQVIQTPE 896
Query: 2278 QQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLN 2457
QQ Y+ KL+GY + I ++ G N ADALSRV+ +I+ D L
Sbjct: 897 QQFYLAKLLGYSYEIVYKPGPQNRIADALSRVQ--------------CLVITVPQLDFLA 942
Query: 2458 DLRRENATDLELARWHDHAINEP-RVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHS 2634
+++ A + E ++ I+ P SDF+V +GLLF K + I S LK+ +L+EFHS
Sbjct: 943 TFKQQLAAETEFQQFLARVISNPAEYSDFEVMNGLLFVKGKLFIPANSPLKTTLLEEFHS 1002
Query: 2635 TPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPA 2814
+ + GH GI RT R+ +W+GMRKDV +FV C +CQQ K + P GLLQPLP+P
Sbjct: 1003 STIGGHSGIHRTFGRLQENVFWEGMRKDVTQFVKSCSVCQQTKPANHYPYGLLQPLPIPN 1062
Query: 2815 LVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLH 2994
VW+++++DFI GL VILVVVDR K+AHFG+LPT FTA R A+LF +M+ +LH
Sbjct: 1063 RVWEDVSLDFIVGLPSFQSHTVILVVVDRFSKAAHFGSLPTHFTAVRVADLFAKMICRLH 1122
Query: 2995 GFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQ 3174
G P ++SDRDPIFLS+FW++L + SGT L STAYHPQ+DGQTE+VN+ L+QYLRCF
Sbjct: 1123 GMPRSMVSDRDPIFLSHFWQELFRLSGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVH 1182
Query: 3175 NQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQN 3354
++PK W + L WAE+ YNT H+S ++PFQ +YGR PP + +Y+P +T+QAVD L +
Sbjct: 1183 DKPKHWGQFLHWAEWHYNTATHTSTGLSPFQVVYGRTPPALVDYIPGSSTIQAVDATLGD 1242
Query: 3355 RAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTR 3534
R +L++LK L++AQ M ++A++HR QF VGD V VKL+PYRQ SV R KL++
Sbjct: 1243 RETILQVLKTKLLKAQAVMKEQADMHRVHHQFKVGDLVFVKLRPYRQNSVLGRRVHKLSK 1302
Query: 3535 RYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKP 3648
R+YGPFK++ +G VA+ L LPP S+IHPVFHVS LKP
Sbjct: 1303 RFYGPFKLIKAIGEVAFELELPPSSRIHPVFHVSQLKP 1340
Score = 160 bits (406), Expect = 7e-36
Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 11/200 (5%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSV---- 433
V+RL+ +E + +++ GLC+NCD+KY HRCK F +L +
Sbjct: 223 VKRLSPDELQARRDAGLCYNCDEKYQRGHRCKRLFHLLIVEPDDTVEESSSFHLAAADSE 282
Query: 434 -EVVDTITADVS------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKV 592
E V +D + SL++L G T P++LR+ G++ N + +LIDSGSTHNF++ +V
Sbjct: 283 PEPVVPSESDPASDTAQISLHALMGHTIPQTLRVMGQIRNNPVAILIDSGSTHNFLQDRV 342
Query: 593 AERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGI 772
A ++GLST F+V VGNG+ L C S+C Q PL L EFLVDL+ILP+ G ++VLG+
Sbjct: 343 AHQLGLSTEPAHSFKVLVGNGEVLTCSSMCPQTPLLLGSHEFLVDLFILPLSGAELVLGV 402
Query: 773 QWLQGLGKVTHEYSTMSMEF 832
QWL+ LG + +Y ++M F
Sbjct: 403 QWLKTLGPIVTDYEKLTMSF 422
>gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifolium pratense]
Length = 1181
Score = 984 bits (2543), Expect = 0.0
Identities = 483/944 (51%), Positives = 663/944 (70%), Gaps = 1/944 (0%)
Frame = +1
Query: 856 LQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDP 1035
+ GS +++ P++ +Q+ ++H + ++ + + L + +T + + + +
Sbjct: 150 ITGSKPSSITPVSFHQITRMLHTNSIATFHSITMLPASTNTT--QTPPSDTQVITSLHPD 207
Query: 1036 MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEML 1215
++ VL Y +F P GLPP R DH IHL P + P+N++PYRYP++QK M ++ +ML
Sbjct: 208 LQLVLHPYLHIFTTPQGLPPQRPHDHHIHLTPAAPPVNIKPYRYPHYQKEAMTNIIVDML 267
Query: 1216 EQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRAR 1395
++G+I+PS SPYSSPVLLVKKKDG++RFCVDYRALNAI +KD+FPIPTIDEL+DEL +
Sbjct: 268 KEGLIQPSTSPYSSPVLLVKKKDGSWRFCVDYRALNAITIKDRFPIPTIDELIDELHGSA 327
Query: 1396 YFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVF 1575
FTK+DLRSGY+QIR+ P D+ KT FRT DGHYEFLVMPFGLTNAPSTFQAAMN + F
Sbjct: 328 VFTKIDLRSGYHQIRLAPEDIPKTGFRTLDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPF 387
Query: 1576 LRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVK 1755
LR+F +VFFDDILIY+ ++H++H++QVL L + +F+ KLSKC FG ++VEYLG I+
Sbjct: 388 LRKFALVFFDDILIYSPTWQAHLKHLQQVLQALSQNQFFAKLSKCQFGVSSVEYLGHIIS 447
Query: 1756 EGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFV 1935
V AD +K+ AM WP PK + LR FLGLTG+YRRF+ YA+IA+PLTDLL ++F
Sbjct: 448 VEGVRADPSKLQAMVSWPVPKNITALRAFLGLTGFYRRFVLNYASIASPLTDLLKANSFA 507
Query: 1936 WTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKL 2115
W+D AN AF LK M P+L+LP+FT F V TDAS +GAVL Q PL+FFSKKL
Sbjct: 508 WSDAANTAFNTLKNAMANLPLLTLPNFTLPFEVTTDASLTAVGAVLSQNSKPLAFFSKKL 567
Query: 2116 GVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIH 2295
++ A+STY++ELYA+TE++ KWRQYLLG F I TDHKS+K L Q + TPEQQ ++
Sbjct: 568 SARLSASSTYVRELYALTEAIKKWRQYLLGSPFKIFTDHKSLKSLMTQTIQTPEQQKWLT 627
Query: 2296 KLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRREN 2475
KL+GY + I ++ G+ N+ ADALSRV+E E + L++ L++ L+
Sbjct: 628 KLLGYTYEIHYKPGKENVVADALSRVQESPMEGECA-------LLTFPISTLISQLQSFF 680
Query: 2476 ATDLELARWHDHAINEPRV-SDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGH 2652
+++ + + A+ +P++ FQVK GLL F++R I S L + +LQEFHS+P GH
Sbjct: 681 SSNPAGTKLMNKAVTDPKMQQQFQVKAGLLHFQNRLFIPFESGLTTSLLQEFHSSPTGGH 740
Query: 2653 PGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEI 2832
GI+ TLAR++A FYW GM KDV++FV C +CQ KYSTQ P GLLQPLP+P VW++I
Sbjct: 741 SGIQATLARLSATFYWPGMYKDVKQFVNACSVCQHNKYSTQSPYGLLQPLPLPQQVWEDI 800
Query: 2833 TMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKI 3012
+MDFIT L + I V+VDRL K AHF ALP FTA A +F + +LHG P I
Sbjct: 801 SMDFITHLPMTHNRSCIWVIVDRLTKFAHFIALPGSFTAASLAPIFITEIYRLHGAPKTI 860
Query: 3013 ISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRW 3192
+SDRD +F+S FW+ L GT+L S++YHPQ+DGQTEV+NRCLE YLRCF ++P+ W
Sbjct: 861 VSDRDRVFVSQFWRALFHHLGTSLAFSSSYHPQSDGQTEVLNRCLETYLRCFVSDEPRLW 920
Query: 3193 IKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLR 3372
++ L AE+ YNT++H++ MTPF+ALYGR PP + +Y P + ++++DE+L + +L+
Sbjct: 921 LRFLALAEFWYNTSFHTAIGMTPFEALYGRKPPTLVHYTPGTSKIESLDELLTQKTLVLK 980
Query: 3373 ILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPF 3552
+LK NLV+A+NRM+ +AN HR++ F VG V +KLQPYRQ SV R + KL +RYYGPF
Sbjct: 981 VLKENLVKARNRMIIQANQHRQDRNFEVGQWVYLKLQPYRQHSVHHRESHKLAKRYYGPF 1040
Query: 3553 KVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTL 3684
++L K+G VAY L LP S++HPVFHVSLLK GE T V+ +
Sbjct: 1041 RILKKIGKVAYELDLPAASRVHPVFHVSLLKLCHGEPTTQVTPI 1084
Score = 114 bits (284), Expect = 2e-21
Identities = 51/122 (41%), Positives = 79/122 (64%)
Frame = +2
Query: 467 SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAITQFRVYV 646
SL + G +PR+LR + +++ VL+DSGS+HN I+P++A + L ++ F V V
Sbjct: 20 SLQAATGHPSPRTLRFIATIHNHRVTVLVDSGSSHNIIQPRIASFLHLPIQPLSSFTVMV 79
Query: 647 GNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYSTMSM 826
GNG+ L C +C+ VP+ + F + LY+LPI+G DVVLG+QWLQ LG +++ SM
Sbjct: 80 GNGEHLHCTGICSDVPIIVSNHTFNIPLYVLPIQGADVVLGVQWLQTLGPFVSDFTIPSM 139
Query: 827 EF 832
+F
Sbjct: 140 QF 141
>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1502
Score = 981 bits (2537), Expect = 0.0
Identities = 515/989 (52%), Positives = 673/989 (68%), Gaps = 25/989 (2%)
Frame = +1
Query: 820 VYGVPMGGRDVKLQGSGSTTLVPITLNQ----LQALIHGDEV----------SEIYEVHF 957
VY +P+ G DV L S TL P + L+ + G V S+ HF
Sbjct: 445 VYLLPIAGADVILGASWLATLGPHVADYASLTLKFFLKGQFVTLTGEPMCRPSQAQLHHF 504
Query: 958 L------SLTGCSTINKLVEQNEEH-FRDVPDPMKA----VLMEYSELFAQPTGLPPPRN 1104
S+ C T+ + EE F+D+PD ++ +L +Y LF PT LPP R+
Sbjct: 505 KRLATTDSIAECFTVQCIKPTVEEDIFKDLPDNIEPEIAMLLHQYRGLFQTPTTLPPNRS 564
Query: 1105 VDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEMLEQGIIRPSHSPYSSPVLLVKKKD 1284
+H I L S P+ V+PYRYP+ QK ++E +++EML+QGII+ S+SP+SSP++LVKKKD
Sbjct: 565 HNHSIPLLEGSAPVKVKPYRYPHSQKQQIELMIQEMLQQGIIQNSNSPFSSPIILVKKKD 624
Query: 1285 GTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRARYFTKLDLRSGYYQIRMHPRDVYK 1464
GT+RFC DYRALNAI VKD FPIPT+DELLDEL A+YF+KLDLRSGY+QI + P D YK
Sbjct: 625 GTWRFCTDYRALNAITVKDCFPIPTVDELLDELHGAKYFSKLDLRSGYHQILLQPEDRYK 684
Query: 1465 TAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVFLRQFVIVFFDDILIYNSNLESHV 1644
TAFRT GHYE+LVMPFGLTNAP+TFQ+ MN +F LR++V+VFFDDILIY+SN + H+
Sbjct: 685 TAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLVFFDDILIYSSNWQEHL 744
Query: 1645 EHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVKEGQVMADKNKITAMSEWPQPKTL 1824
H+ VL LQ YVKLSKC+FG +EYLG +V V DK+K+ A+ WP P +
Sbjct: 745 HHLDTVLTVLQDNTLYVKLSKCSFGVLEIEYLGHVVTGQGVSMDKDKVQAVVNWPTPSNV 804
Query: 1825 KQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFVWTDEANVAFLQLKQVMCEAPVLS 2004
KQLRGFLGLTGYYRRFI+ YA IA+PLTDLL K+A+ WT++A VAF QLK + APVL
Sbjct: 805 KQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWTEQAEVAFHQLKNAITTAPVLI 864
Query: 2005 LPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKLGVKMRAASTYIKELYAITESV*K 2184
LP+F E F++ETDAS +GIGAVL Q+GHP+++FSKKL + + S Y +E+ AI E++ K
Sbjct: 865 LPNFKEPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAK 924
Query: 2185 WRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIHKLMGYHFRIEFRSGRTNLAADAL 2364
+R YLLG FIIRTD KS++ L +Q + TPEQQ ++HK +GY F IE++ G+ N+AADAL
Sbjct: 925 FRHYLLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADAL 984
Query: 2365 SRVEEETGVEELSDAAQNFQLISQISCDLLNDLRRENATDLELARWHDHAINEPRVSDFQ 2544
SR V ++ + +QL+ Q+ L ND + ++AI + V +
Sbjct: 985 SR------VMVMAWSEPKWQLLDQVRRALENDNQLREV-------MQNYAIGKAPV-QYS 1030
Query: 2545 VKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHPGIKRTLARIAAIFYWQGMRKDVE 2724
+++GLL++K R VI + +L ++L EFH++P+ GH GI RT+ARI A FYW M+KD+
Sbjct: 1031 MREGLLYWKQRLVIPKNDDLLQKLLFEFHTSPIGGHAGITRTIARIKAQFYWPDMKKDIA 1090
Query: 2725 EFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEITMDFITGLQEVNGFLVILVVVDRL 2904
E+V KC +CQQ K + PAGLLQPLP+P+ VW++I MDFITGL G+ I+VVVDRL
Sbjct: 1091 EYVHKCVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRL 1150
Query: 2905 IKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKIISDRDPIFLSNFWKQLLKQSGTTL 3084
KSAHF + T +T++ AE F +VKLHG P I+SDRD +F S FW+ L K GT+L
Sbjct: 1151 TKSAHFIPMKTDYTSKTVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQHLFKMQGTSL 1210
Query: 3085 HHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWIKLLKWAEYSYNTNYHSSAQMTPF 3264
S+AYHPQTDGQTEV+N+ LE +LRCFT + PK W K++ WAEY YNT + +S MTPF
Sbjct: 1211 AMSSAYHPQTDGQTEVLNKTLELFLRCFTFHNPKSWFKVMSWAEYWYNTAFQTSIGMTPF 1270
Query: 3265 QALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRILKNNLVQAQNRMVQRANLHRREV 3444
+ALYGR PP + Y V A+ E L R ++L+ LK NL +AQ M Q+A+ HRREV
Sbjct: 1271 KALYGRDPPYLTKYEVQVDDPPALREELMERDQILQQLKTNLERAQQYMKQQADKHRREV 1330
Query: 3445 QFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFKVLDKVGLVAYRLGLPPESKIHPV 3624
F VGD VLVKLQPY+Q SVA R NQKL RY+GPF+V+ VG VAY+L LP +KIHPV
Sbjct: 1331 SFKVGDLVLVKLQPYKQQSVALRKNQKLGMRYFGPFEVIACVGKVAYKLQLPENAKIHPV 1390
Query: 3625 FHVSLLKPFKGEATETVSTLRRRVF*TSP 3711
FHVS LKPF G + E L + T P
Sbjct: 1391 FHVSQLKPFHGTSQEQYLPLPLTMSDTGP 1419
Score = 115 bits (289), Expect = 5e-22
Identities = 61/204 (29%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVD 445
++R++ E + ++++GLC+ CD+K++ H+C + ++L +V D
Sbjct: 283 IKRMSPAERQVRRDKGLCYWCDEKFSFTHKCPNRQMLLLQYDDDDNDAD-------QVFD 335
Query: 446 TITADVS---------------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFI 580
T+T SLN+L G +N +R G + +Q+LID GS+ NF+
Sbjct: 336 TLTQTEQVTTNGQTTNLPEHHLSLNALKGTSNMGVIRFAGSIEHIGVQILIDGGSSDNFM 395
Query: 581 KPKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDV 760
+P++A+ + L QF V VGNG+ + + + ++PL +QG V +Y+LPI G DV
Sbjct: 396 QPRIAKFLKLPIEPGPQFNVLVGNGEVMSAEGMIQKLPLHIQGHVIEVPVYLLPIAGADV 455
Query: 761 VLGIQWLQGLGKVTHEYSTMSMEF 832
+LG WL LG +Y++++++F
Sbjct: 456 ILGASWLATLGPHVADYASLTLKF 479
>gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1478
Score = 976 bits (2523), Expect = 0.0
Identities = 489/949 (51%), Positives = 664/949 (69%), Gaps = 4/949 (0%)
Frame = +1
Query: 850 VKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVP 1029
V+L G I+ NQL+ LI + +++++ LS C K +N H P
Sbjct: 443 VELCGEIDPPPADISYNQLKKLIEVEPMAQLFS---LSPVTCPDPLK---ENLVH----P 492
Query: 1030 DPM-KAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVK 1206
+P+ ++L +S LF +PT LPPPR DH+I + PN+ P+NVRPYRYP+ QK E+E V+
Sbjct: 493 NPLITSLLRRFSSLFNEPTHLPPPRFTDHQIPVPPNASPVNVRPYRYPHAQKLEIETQVR 552
Query: 1207 EMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELG 1386
++L+ G I+PS+SPYSSP+LL+KKKDGT+R CVD+RALNA+ +KD+FP+PT+DELLDELG
Sbjct: 553 KLLDNGWIKPSNSPYSSPILLLKKKDGTWRMCVDFRALNALTIKDRFPLPTVDELLDELG 612
Query: 1387 RARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVF 1566
AR F+KLDL SG++QIR+ P+D +KTAFRT +GHYE+ VMPFGL NAP+TFQA MN VF
Sbjct: 613 SARVFSKLDLTSGFHQIRLQPKDSHKTAFRTHEGHYEYRVMPFGLCNAPATFQATMNDVF 672
Query: 1567 SVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGL 1746
LR+ VIVFFDDIL+Y+ SH+EH+ V + L K +FY+K KC+F Q + YLG
Sbjct: 673 RPLLRRTVIVFFDDILVYSDTEASHIEHLACVFELLAKHQFYLKPQKCSFAQQQIGYLGH 732
Query: 1747 IVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKD 1926
+V G V D KI A+ +WP P ++K LRGFLGL GYYR+F+R YA++A+PLT LL KD
Sbjct: 733 VVSAGTVAPDPEKINAIMDWPVPHSVKTLRGFLGLAGYYRKFVRNYASLASPLTSLLKKD 792
Query: 1927 AFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFS 2106
AF W+D A +F LKQ + APVL+LP+F+ F+V+TDASN +GAVL+Q+GHPL++FS
Sbjct: 793 AFQWSDSALDSFNALKQALTTAPVLALPNFSNTFIVQTDASNHAMGAVLLQQGHPLAYFS 852
Query: 2107 KKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQI 2286
K ++ ASTYI+EL+AIT +V +WRQYLLG FFII+TDH+S+KEL QV+ TPEQQ
Sbjct: 853 KMFCPRLAKASTYIRELHAITAAVKRWRQYLLGNFFIIQTDHRSLKELLTQVIQTPEQQH 912
Query: 2287 YIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLR 2466
Y+ KL+GY++ I++R G TNLAADALSR L++ + + +LR
Sbjct: 913 YLSKLLGYNYEIQYRPGNTNLAADALSRAS--------VIVTNELYLLTVPNLLFMEELR 964
Query: 2467 RENATD---LELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHST 2637
+E +TD LEL R + F++ +G L + R I S K+ +LQE+H +
Sbjct: 965 KELSTDSVYLELCR--KIQADPSLFPKFKLTNGWLSYNGRIWISPNSRFKTLLLQEYHDS 1022
Query: 2638 PMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPAL 2817
AGH GI +T+ R++ FYW+ M++DV+ + C ICQQ KYST P+GLLQPLP+P
Sbjct: 1023 LSAGHAGISKTMKRLSENFYWEHMKQDVQNHIRHCTICQQTKYSTARPSGLLQPLPIPNH 1082
Query: 2818 VWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHG 2997
+W++++MDFITGL G VI VVVDR K H GAL +GFTA + AELF +V K HG
Sbjct: 1083 IWEDLSMDFITGLPLSKGHSVIFVVVDRFSKGIHLGALSSGFTAYKVAELFVSIVCKHHG 1142
Query: 2998 FPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQN 3177
P I+SDRDPIF+S FW+ L K SGT L S++YHPQTDGQTEV+NR +EQYLR F +
Sbjct: 1143 IPRSIVSDRDPIFISKFWRDLFKFSGTFLRMSSSYHPQTDGQTEVMNRTIEQYLRAFVHD 1202
Query: 3178 QPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNR 3357
+P W+ LL W EY YNT+ HS ++++PFQ ++G+ PP IP+Y+ ++++A D +LQ+R
Sbjct: 1203 KPYNWVTLLPWVEYHYNTSTHSGSELSPFQVMFGKSPPSIPSYIAGSSSIEACDSVLQSR 1262
Query: 3358 AELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRR 3537
E+L +L+ NL +AQ RM A+ HR+EV F +G V VKLQPYRQ+S++R KL +R
Sbjct: 1263 DEILTLLRKNLNKAQVRMKANADKHRKEVNFDIGAWVYVKLQPYRQISLSRTKYHKLAKR 1322
Query: 3538 YYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTL 3684
YYGP+ + K+G VAY+L LPP +KIH VFHVSLLK ++G A + V L
Sbjct: 1323 YYGPYLISAKIGTVAYQLELPPHAKIHNVFHVSLLKLYEGPAPQQVDQL 1371
Score = 146 bits (369), Expect = 2e-31
Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Frame = +2
Query: 164 PRTT-PSLQPNFRSPSQHXXXXXXXXXXXXXXXXXVRRLTHEEYRDKKERGLCFNCDQKY 340
PRTT P P+ SP + R+L+ E +++E+GLCFNCD+++
Sbjct: 202 PRTTAPWSNPSSSSPRSNPAPTTASLLPTPANHPRYRQLSPTEMNERREKGLCFNCDERF 261
Query: 341 TANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVDTITADVSSL-----------NSLAG 487
+ HRCK +FL+ DVS L ++L+G
Sbjct: 262 SRTHRCKARFLLFIADEDEELAGLDPGETDPPPAADPLPDVSGLVEEFHSAQLSYHALSG 321
Query: 488 ATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAITQFRVYVGNGDSLI 667
+ +++R+ GRVG + ++VL+D GST NFI+ ++A ++GL T +V VGNG+ L
Sbjct: 322 VQSAQTIRVPGRVGAHSVRVLVDGGSTLNFIQAQIAHKLGLPHIPSTPIKVIVGNGEELS 381
Query: 668 CKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYSTMSMEF 832
+C V L +QG F VDLY L + GPD+VLG WL+ LG V +Y++++M+F
Sbjct: 382 STQVCRGVQLEMQGHVFAVDLYALNLCGPDIVLGTPWLKTLGPVMMDYNSLTMKF 436
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 974 bits (2519), Expect = 0.0
Identities = 494/945 (52%), Positives = 650/945 (68%), Gaps = 5/945 (0%)
Frame = +1
Query: 850 VKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVP 1029
+ LQG G++ L+ + L + + E + + + E E+ +D+P
Sbjct: 506 ITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQK----------EVPEDTLKDLP 555
Query: 1030 ---DPMKAVLME-YSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEK 1197
DP A+L+ Y+++FA P LPP R DH I L+ S P+ VRPYRYP+ QK ++EK
Sbjct: 556 TNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEK 615
Query: 1198 LVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLD 1377
+++EML QGII+PS+SP+S P+LLVKKKDG++RFC DYRALNAI VKD FP+PT+DELLD
Sbjct: 616 MIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLD 675
Query: 1378 ELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMN 1557
EL A+YF+KLDLRSGY+QI + P D KTAFRT GHYE+LVMPFGLTNAP+TFQ MN
Sbjct: 676 ELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMN 735
Query: 1558 QVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEY 1737
++F LR+FV+VFFDDILIY+++ + H++H+ VL L++ + + +LSKC+FG T V+Y
Sbjct: 736 KIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDY 795
Query: 1738 LGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLL 1917
LG V V + K+ A+ +WP P +KQLRGFLGLTGYYRRFI+ YA IA PLTDLL
Sbjct: 796 LGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLL 855
Query: 1918 CKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLS 2097
KD+F+W +EA AF++LK+ M EAPVLSLPDF++ F++ETDAS +G+GAVL Q GHP++
Sbjct: 856 QKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIA 915
Query: 2098 FFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPE 2277
+FSKKL +M+ S Y +EL AITE++ K+R YLLG FIIRTD +S+K L Q + TPE
Sbjct: 916 YFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPE 975
Query: 2278 QQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLI-SQISCDLL 2454
QQ ++HK +GY F+IE++ G+ N AADALSR+ F L S+ L
Sbjct: 976 QQAWLHKFLGYDFKIEYKPGKDNQAADALSRM---------------FMLAWSEPHSIFL 1020
Query: 2455 NDLRRENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHS 2634
+LR +D L + + S + V++GLL++K R VI E+ ++ILQE+HS
Sbjct: 1021 EELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHS 1080
Query: 2635 TPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPA 2814
+P+ GH GI RTLAR+ A FYW M++DV+ ++ KC ICQQ K + PAGLLQPLP+P
Sbjct: 1081 SPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQ 1140
Query: 2815 LVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLH 2994
VW+++ MDFITGL G VI+VV+DRL K AHF L + ++ AE F +VKLH
Sbjct: 1141 QVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLH 1200
Query: 2995 GFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQ 3174
G P I+SDRD +F S FW+ L K GTTL S+AYHPQ+DGQ+EV+N+CLE YLRCFT
Sbjct: 1201 GIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTY 1260
Query: 3175 NQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQN 3354
PK W+K L WAE+ YNT YH S MTPF+ALYGR PP + + V E L +
Sbjct: 1261 EHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTD 1320
Query: 3355 RAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTR 3534
R LL LK NL +AQ M ++A+ R +V F +GDEVLVKLQPYRQ S R NQKL+
Sbjct: 1321 RDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSM 1380
Query: 3535 RYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATE 3669
RY+GPFKVL K+G VAY+L LP ++IHPVFHVS LKPF G A +
Sbjct: 1381 RYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQD 1425
Score = 117 bits (293), Expect = 2e-22
Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEV-- 439
+++++ E + ++E+ LC+ CD+K++ H+C + ++L E
Sbjct: 310 IKKISPAEIQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEAN 369
Query: 440 VDTITADVSSLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTT 619
+D T +S LN++ G+ ++R G+VG +++L+D GS+ NFI+P+VA+ + L
Sbjct: 370 MDDDTHHLS-LNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVE 428
Query: 620 AITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKV 799
RV VGNG L + + Q+PL +QGQE V +Y+L I G DV+LG WL LG
Sbjct: 429 PAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPH 488
Query: 800 THEYSTMSMEF 832
+Y+ ++++F
Sbjct: 489 VADYAALTLKF 499
>gb|OMO55704.1| reverse transcriptase [Corchorus capsularis]
Length = 2083
Score = 973 bits (2514), Expect = 0.0
Identities = 495/941 (52%), Positives = 657/941 (69%)
Frame = +1
Query: 862 GSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDPMK 1041
GS S++ P QL D +S ++L+L +T ++ +EQ+ VP +
Sbjct: 492 GSSSSSGRPSHPQQLHRWAQTDAISS---ANWLTLQ--ATTSEDLEQSLP-LDSVPPALA 545
Query: 1042 AVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEMLEQ 1221
A+L +S++F P GLPP R DH IHL S +NV+PYRYP+ QK +ME L+ EML++
Sbjct: 546 ALLQRFSKVFETPKGLPPKRQHDHHIHLILGSKSVNVKPYRYPHSQKKDMEILIIEMLQE 605
Query: 1222 GIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRARYF 1401
G+IRPS SP+SSPVLLV+KKDG++RFCVDYRALNAI ++D+FPI TIDELLD+L A F
Sbjct: 606 GVIRPSTSPFSSPVLLVRKKDGSWRFCVDYRALNAITIRDRFPISTIDELLDKLHGASVF 665
Query: 1402 TKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVFLR 1581
TK+DLR+GY+QIR+ D+ KTAFRT+DGH+EF V+PF LTNAPSTFQ+AMN +F FLR
Sbjct: 666 TKIDLRAGYHQIRIAEPDISKTAFRTSDGHFEFQVIPFDLTNAPSTFQSAMNDLFRPFLR 725
Query: 1582 QFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVKEG 1761
+FV+VFFDDIL+YN +LE H+ H++QVL+ L +Q+FY KLSKC+F Q++++YL I+ +
Sbjct: 726 RFVLVFFDDILVYNKSLEEHLTHLQQVLNLLLEQQFYAKLSKCSFAQSSIDYLEHIISDQ 785
Query: 1762 QVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFVWT 1941
V D +KI A+ WPQP +K LRGFLGLTGYYR+F+ YATIAAPLTDLL AF WT
Sbjct: 786 GVQVDPSKIEAVMAWPQPSNVKSLRGFLGLTGYYRKFVAHYATIAAPLTDLLKSKAFHWT 845
Query: 1942 DEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKLGV 2121
A+ F +LKQ + P L+LPDF++ F V TDASNV +GAVL Q HPL++FSKKL
Sbjct: 846 QSASDVFEKLKQALTSTPCLALPDFSKPFEVTTDASNVAVGAVLSQDSHPLAYFSKKLNP 905
Query: 2122 KMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIHKL 2301
K++ +STY++E+YAITE+ KWRQYLLGR FII TD +S++ L Q + TPEQQ ++ KL
Sbjct: 906 KLQNSSTYVREMYAITEAFKKWRQYLLGRPFIIYTDQQSLRGLMNQTIQTPEQQKWLVKL 965
Query: 2302 MGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRRENAT 2481
+G+ + I+++ G N DALSR N IS + L+DLR+ +
Sbjct: 966 LGFQYSIQYKPGTQNKVVDALSR---------SFPVEANCLAISGLVFSFLDDLRQYFIS 1016
Query: 2482 DLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHPGI 2661
D + + P S+F + +GL+ R VI L+ +L EFHST GH GI
Sbjct: 1017 DTRGKLFFQQCQDSP--SEFTIVNGLIMRDGRIVIPDSHPLQQTLLHEFHSTLTGGHAGI 1074
Query: 2662 KRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEITMD 2841
RTL R++A F+W MRK V+EFV+ C++CQ++KY T P GLL+PLP+P+ W +I MD
Sbjct: 1075 SRTLVRLSASFWWNNMRKSVKEFVSTCKVCQEVKYLTSKPQGLLEPLPIPSQAWQDIAMD 1134
Query: 2842 FITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKIISD 3021
FIT L +G + I V+VDR K AHF ALP G TA A +F + +VKLHG P I+SD
Sbjct: 1135 FITHLPISHGKVTIWVIVDRFSKYAHFLALPAGVTAPHLAAIFAQEIVKLHGIPRSIVSD 1194
Query: 3022 RDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWIKL 3201
RDP+F+S FW +L K GT L S+AYHPQTDGQ+EV+NRCLE YLR F PK+W ++
Sbjct: 1195 RDPLFVSKFWNELFKLQGTQLPMSSAYHPQTDGQSEVLNRCLETYLRAFVSENPKQWTRI 1254
Query: 3202 LKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRILK 3381
L WAE+SYN+++HS+A MTPFQALYG PP IP+Y+P TV +D+ L +R +LL+ LK
Sbjct: 1255 LHWAEWSYNSSFHSAACMTPFQALYGFPPPSIPSYLPGSTTVAQLDDSLIDRQQLLKQLK 1314
Query: 3382 NNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFKVL 3561
NL +A NRM +A+ R E QF GD VLVKLQPYRQ SV R++QKL+++Y+GP+K+L
Sbjct: 1315 ANLARASNRMKIQADRKRVEKQFTEGDLVLVKLQPYRQQSVVSRTSQKLSKKYFGPYKIL 1374
Query: 3562 DKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTL 3684
K+G VAY+L LP S++HPVFHVSLL+ FKG+ T S L
Sbjct: 1375 QKIGPVAYKLELPEGSRVHPVFHVSLLRAFKGDLPATPSPL 1415
Score = 113 bits (283), Expect = 3e-21
Identities = 67/195 (34%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGK-FLILFXXXXXXXXXXXXXXXSVEVV 442
+RRLT E + ++ +GLCFNCD+++ HRCK FL+L +++
Sbjct: 294 IRRLTATEMQARRSKGLCFNCDEQFKPGHRCKTTPFLLLQSHEESFEPVPPLNDTPMDLY 353
Query: 443 D-------------------TITADVS-SLNSLAGATNPRSLRLDGRVGENQIQVLIDSG 562
T T+D SL +L G ++ ++L ++ VLIDSG
Sbjct: 354 PPSVELSALPLPPPPTHSPATDTSDFQVSLYALYGHSSQSCMKLQCQIRGLPFTVLIDSG 413
Query: 563 STHNFIKPKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILP 742
STHN I+PKVA +GL V VGNGD L C+ + + + + LQG F +DLY+L
Sbjct: 414 STHNLIQPKVARHLGLLIEPAPPLSVRVGNGDVLHCQGMVSALQIDLQGVNFALDLYLLD 473
Query: 743 IEGPDVVLGIQWLQG 787
+ G +V+LG+QW G
Sbjct: 474 VHGAEVILGVQWKMG 488
>dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subterraneum]
Length = 1524
Score = 972 bits (2512), Expect = 0.0
Identities = 472/926 (50%), Positives = 655/926 (70%)
Frame = +1
Query: 889 ITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDPMKAVLMEYSEL 1068
++L Q++ + +S ++++ L + T + P + ++L +++ L
Sbjct: 478 VSLPQIKRCVQTHALSSLFQLQILPSSSSQT------ETVPMSHPPPPEITSLLNQFTHL 531
Query: 1069 FAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEMLEQGIIRPSHSP 1248
F QP LPP R DH+IHL PNS P+NVRPYRYPY QK E+EK V EML G+I+PS SP
Sbjct: 532 FDQPPKLPPNRPTDHQIHLLPNSSPVNVRPYRYPYHQKFEIEKQVTEMLSAGLIQPSRSP 591
Query: 1249 YSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRARYFTKLDLRSGY 1428
+SSP+LLVKKKDG++R CVDYRALNAI +KD+FP+PTIDELLD+LG A +F+KLDL+ G+
Sbjct: 592 FSSPILLVKKKDGSWRCCVDYRALNAITIKDRFPMPTIDELLDDLGGASWFSKLDLQQGF 651
Query: 1429 YQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVFLRQFVIVFFDD 1608
+QIRM D+ KTAFRT GHYE+LVMPFGL NAPSTFQA MN + FLR+F VFFDD
Sbjct: 652 HQIRMSSDDIPKTAFRTHHGHYEYLVMPFGLCNAPSTFQATMNDLLQPFLRKFTAVFFDD 711
Query: 1609 ILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVKEGQVMADKNKI 1788
IL+++ L +HV H+ Q+L L F++K SKC FGQ ++YLG I+ + + AD +K+
Sbjct: 712 ILVFSDTLHNHVLHLEQILSKLASANFFLKRSKCLFGQRQLDYLGHIISQHGIQADPSKL 771
Query: 1789 TAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFVWTDEANVAFLQ 1968
AM +WP P ++ LRGFLGLTG+YR+FI+GYA+IA PLT+LL K++F+W +EA AF
Sbjct: 772 QAMVDWPTPTSITALRGFLGLTGFYRKFIQGYASIATPLTNLLKKNSFLWNNEAQTAFES 831
Query: 1969 LKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKLGVKMRAASTYI 2148
LK+ M EAP L++P+F+ F +ETDAS +GAVLMQ HP++FFSK+ ++ +STYI
Sbjct: 832 LKKAMTEAPTLAIPNFSIPFDLETDASGKAMGAVLMQLNHPIAFFSKQFCPRLLRSSTYI 891
Query: 2149 KELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIHKLMGYHFRIEF 2328
+EL+AIT +V KWRQYLLG F I TDHKS+KEL QV+ TPEQQ+Y+ KL+G+ F+I++
Sbjct: 892 RELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGFDFKIQY 951
Query: 2329 RSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRRENATDLELARWHD 2508
+SG+TN+ ADALSRV+ T L+ +F + ++ L + +T+ H
Sbjct: 952 KSGKTNVVADALSRVDNPTC---LTLTMPHFIFLDELRLSL------QPSTEFTTLS-HQ 1001
Query: 2509 HAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHPGIKRTLARIAA 2688
N D++ GLLF+K++ + + K R+LQEFH++P++GH GI++T R+
Sbjct: 1002 VQQNPANYPDYKTHQGLLFYKNKIWLNSSNPFKHRLLQEFHNSPLSGHMGIQKTYIRLHE 1061
Query: 2689 IFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEITMDFITGLQEVN 2868
FYWQGMR DV+ FV+ C CQ KY T+ PAGLLQPLPVP+ +W+++++DFITGL +
Sbjct: 1062 NFYWQGMRDDVKHFVSNCLTCQATKYETKKPAGLLQPLPVPSAIWEDLSLDFITGLPPSH 1121
Query: 2869 GFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKIISDRDPIFLSNF 3048
GF VILVVVDR K AHFGALP+ F+A + A LF +++ K HG P ++SDRDPIF+S F
Sbjct: 1122 GFTVILVVVDRFSKGAHFGALPSSFSAYKVAALFLDIICKYHGLPRSLVSDRDPIFISRF 1181
Query: 3049 WKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWIKLLKWAEYSYN 3228
W++L K SGT L ST+YHP+TDGQTEV+NR LEQYLR F ++P RW + L AE+SYN
Sbjct: 1182 WRELFKLSGTKLRMSTSYHPETDGQTEVLNRILEQYLRSFVHSKPNRWHQFLPLAEWSYN 1241
Query: 3229 TNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRILKNNLVQAQNR 3408
T HS+ +PF+ +G+ PP IP+Y+ + V+AVD +L R + + +L+ L++AQ +
Sbjct: 1242 TTSHSATGRSPFEVTFGKPPPSIPSYLLGSSNVEAVDTLLTTRQQTITVLQRKLLKAQEK 1301
Query: 3409 MVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFKVLDKVGLVAYR 3588
M A+ RRE+ ++VGD V VKL+PYRQ S+ + KL++R+YGP+K+++ +G VAY+
Sbjct: 1302 MKFYADKKRRELSYVVGDFVYVKLRPYRQQSLTGSTCSKLSKRFYGPYKIVECIGPVAYK 1361
Query: 3589 LGLPPESKIHPVFHVSLLKPFKGEAT 3666
L LPP+SKIHPVFH SLLK +G T
Sbjct: 1362 LELPPQSKIHPVFHCSLLKQHRGSLT 1387
Score = 164 bits (415), Expect = 7e-37
Identities = 93/259 (35%), Positives = 146/259 (56%), Gaps = 10/259 (3%)
Frame = +2
Query: 86 SGPSNRPNNSLITQPNTLHAKTESVSPRTTPS-LQPNFRSPSQHXXXXXXXXXXXXXXXX 262
S P+ + + +T PNTL +P T PS L+ NF+
Sbjct: 230 SNPNTNSSFNTVTFPNTL------TNPTTAPSTLKVNFK--------------------- 262
Query: 263 XVRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXX-SVEV 439
+L+ EE +++RGLC+NCD+ +T HRCKG+F +L ++E
Sbjct: 263 ---KLSPEELISRRDRGLCYNCDENFTTGHRCKGRFFLLISEDDDIHTPLEPLSGPAIEE 319
Query: 440 V-------DTITADVSSLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAE 598
V DT T SL++++G++N ++RL G + ++ + VL+D GS+HNFI+ ++A+
Sbjct: 320 VASSPPSPDTETPAQLSLHAMSGSSNHNTIRLTGTINKHSVAVLVDGGSSHNFIQTRIAK 379
Query: 599 RIGLSTTAI-TQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQ 775
+ L+ T T RV VG+GD+L C C+QVPL++QGQ+F VDL++LP+ G ++VLG
Sbjct: 380 FLDLNPTPTHTALRVMVGSGDTLECTHKCSQVPLSIQGQQFAVDLFVLPLGGTEIVLGAP 439
Query: 776 WLQGLGKVTHEYSTMSMEF 832
WL+ LG V +YS +SM F
Sbjct: 440 WLKSLGPVLMDYSNLSMTF 458
>gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1410
Score = 971 bits (2509), Expect = 0.0
Identities = 478/928 (51%), Positives = 654/928 (70%), Gaps = 2/928 (0%)
Frame = +1
Query: 889 ITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVPDP--MKAVLMEYS 1062
++L Q++ + +S ++++ L L +QNE P P + ++L ++
Sbjct: 383 VSLPQMKRCVQTHALSSLFQLQILP--------SLSQQNEPVTITSPQPPELTSLLTNFT 434
Query: 1063 ELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEMLEQGIIRPSH 1242
+LF QP LPP R+ +H+IHL PNS P+NVRPYRYPY QK E+EK V EML G+I+PS
Sbjct: 435 QLFDQPPKLPPNRHTNHQIHLIPNSSPVNVRPYRYPYHQKFEIEKQVTEMLSSGLIQPSR 494
Query: 1243 SPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRARYFTKLDLRS 1422
SP+SSPVLLVKKKDG++R CVDYRALNAI +KD+FP+PTIDELLD+LG A +F+KLDL+
Sbjct: 495 SPFSSPVLLVKKKDGSWRCCVDYRALNAITIKDRFPMPTIDELLDDLGGASWFSKLDLQQ 554
Query: 1423 GYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVFLRQFVIVFF 1602
G++QIRM D+ KTAFRT GHYE+LVMPFGL NAPSTFQA MN + FLR+F VFF
Sbjct: 555 GFHQIRMSSDDIPKTAFRTHHGHYEYLVMPFGLCNAPSTFQATMNDLLQPFLRKFAAVFF 614
Query: 1603 DDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVKEGQVMADKN 1782
DDIL+++ L H+ H+ QVL+ L F +K SKC FGQ +EYLG I+ + + AD +
Sbjct: 615 DDILVFSPTLTDHLLHLEQVLNQLASADFSLKRSKCLFGQRQLEYLGHIISQHGIQADPS 674
Query: 1783 KITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFVWTDEANVAF 1962
K+ AM EWP P ++ LRGFLGLTG+YR+FI+GYA+IA PLT+LL KD+F W DEA AF
Sbjct: 675 KLQAMVEWPTPTSITSLRGFLGLTGFYRKFIKGYASIATPLTNLLKKDSFFWNDEAQTAF 734
Query: 1963 LQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKLGVKMRAAST 2142
LK+ M EAP LS+P+F+ F +ETDAS +GAVLMQ HP++FFSK+ ++ +ST
Sbjct: 735 DSLKKAMTEAPTLSVPNFSIPFDLETDASGKAMGAVLMQLSHPIAFFSKQFCPRLLRSST 794
Query: 2143 YIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIHKLMGYHFRI 2322
Y++EL+AIT +V KWRQYLLG F I TDHKS+KEL QV+ TPEQQ+Y+ KL+GY F+I
Sbjct: 795 YVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGYDFKI 854
Query: 2323 EFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRRENATDLELARW 2502
+++SG+ N+ ADALSRV+ T L+ +F + ++ L + +T+ +
Sbjct: 855 QYKSGKANVVADALSRVDSPTC---LTLTMPHFIFLDELRLSL------QPSTEF-TTLF 904
Query: 2503 HDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHPGIKRTLARI 2682
H N +++ GLLF+K++ + + K R+LQEFH++P++GH GI++T R+
Sbjct: 905 HQVQQNPSTYPNYKTHQGLLFYKNKIWLNSSNPFKQRLLQEFHNSPLSGHMGIQKTYIRL 964
Query: 2683 AAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEITMDFITGLQE 2862
FYWQGMR DV+ FV+ C CQ KY T+ PAGLLQPLPVP+ +W+++++DFITGL
Sbjct: 965 HENFYWQGMRDDVKHFVSNCLTCQATKYETKKPAGLLQPLPVPSAIWEDLSLDFITGLPP 1024
Query: 2863 VNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKIISDRDPIFLS 3042
+GF VILVVVDR K AHFGALP+ F+A + A LF +++ K HG P ++SDRDPIF+S
Sbjct: 1025 SHGFTVILVVVDRFSKGAHFGALPSSFSAYKVAALFLDIICKHHGLPRSLVSDRDPIFIS 1084
Query: 3043 NFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWIKLLKWAEYS 3222
FW++L K SGT L ST+YHP+TDGQTEV+NR LEQYLR F ++P W + L AE+S
Sbjct: 1085 RFWRELFKLSGTKLRMSTSYHPETDGQTEVLNRILEQYLRSFVHSKPTHWHQFLPLAEWS 1144
Query: 3223 YNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRILKNNLVQAQ 3402
YNT HS+ +PF+ +G+ PP IP+Y+ + V+AVD +L R + +L+ L++AQ
Sbjct: 1145 YNTTSHSATGRSPFEITFGKPPPSIPSYLLGSSNVEAVDTLLTTRQHTITLLQRKLLKAQ 1204
Query: 3403 NRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFKVLDKVGLVA 3582
M A+ RRE+ + VGD V VKL+PYRQ S+ + KL++R+YGP+K+++++G VA
Sbjct: 1205 ETMKFYADQKRRELSYAVGDFVYVKLRPYRQQSLTGSTYSKLSKRFYGPYKIVERIGPVA 1264
Query: 3583 YRLGLPPESKIHPVFHVSLLKPFKGEAT 3666
Y+L LPP+SKIHPVFH SLLK +G T
Sbjct: 1265 YKLELPPQSKIHPVFHCSLLKQHRGPLT 1292
Score = 122 bits (307), Expect = 4e-24
Identities = 55/123 (44%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Frame = +2
Query: 467 SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAI-TQFRVY 643
SL++++G++N ++R+ G + ++ + VL+D GS+HNFI+ ++ + +GL+ T T RV
Sbjct: 241 SLHAMSGSSNHNTIRVTGTINKHSVAVLVDGGSSHNFIQTRITKFLGLNPTPTHTPLRVM 300
Query: 644 VGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYSTMS 823
VG+GD+L C C+QVPL++QGQ F VDL++LP+ G ++VLG WL+ LG V +YS +S
Sbjct: 301 VGSGDTLECTQKCSQVPLSIQGQPFAVDLFVLPLGGAEIVLGAPWLKSLGPVLMDYSNLS 360
Query: 824 MEF 832
M F
Sbjct: 361 MTF 363
>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
Length = 1512
Score = 970 bits (2508), Expect = 0.0
Identities = 496/962 (51%), Positives = 664/962 (69%), Gaps = 1/962 (0%)
Frame = +1
Query: 835 MGGRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEH 1014
+ G+ V L G P + L+ + ++E + V L T + I K + N E
Sbjct: 477 LNGKFVTLVGEPLARPEPTQFHHLKRCCNTKAIAECFIVQRLKTTEATDIFKELPTNTE- 535
Query: 1015 FRDVPDPMKAVLME-YSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEM 1191
P A+L+ Y E+F P GLPP R +H I L S P+ V+PYRYP+ QK ++
Sbjct: 536 ------PEIAMLLHNYQEVFKTPNGLPPTRAHNHSIPLLEGSNPVKVKPYRYPHSQKTQI 589
Query: 1192 EKLVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDEL 1371
E +V++ML+QGII+PS SP+SSP++LVKKKDGT+RFC DYRALNAI VKD FPIPT+DEL
Sbjct: 590 EHMVQDMLQQGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDEL 649
Query: 1372 LDELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAA 1551
LDEL A++F+KLDLRSGY+QI + P D YKTAFRT GHYE+LVMPFGLTNAP+TFQ+
Sbjct: 650 LDELFGAKHFSKLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSL 709
Query: 1552 MNQVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTV 1731
MN +F LR++V+VFFDDIL+Y+ + H++H+ VL LQ +VKLSKC+FG + +
Sbjct: 710 MNTIFQNVLRKYVLVFFDDILVYSKTWQEHLKHLAAVLQVLQDNELFVKLSKCSFGVSEI 769
Query: 1732 EYLGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTD 1911
EYLG +V V DK KI A+ +WP PK +KQLRGFL LTGYYRRFI+ YA IA+PLTD
Sbjct: 770 EYLGHVVNGQGVSMDKEKIQAVLDWPPPKNIKQLRGFLCLTGYYRRFIQSYAKIASPLTD 829
Query: 1912 LLCKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHP 2091
LL K+A+VWT +A AF QLK + APVL+LP+FT+ F++ETDAS VGIGAVL Q+GHP
Sbjct: 830 LLKKEAYVWTTQAKAAFQQLKNAITSAPVLALPNFTKTFILETDASGVGIGAVLHQEGHP 889
Query: 2092 LSFFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHT 2271
+++FSKKL + + S Y +E+ AI E++ K+R YLLG FIIRTD KS++ L +Q + T
Sbjct: 890 IAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQTLQT 949
Query: 2272 PEQQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDL 2451
P+QQ ++H+ +GY F IE++ G+ N+ ADALSR V L+ + F+L+ QI
Sbjct: 950 PDQQEWLHRFLGYDFSIEYKPGKDNVVADALSR------VMTLAWSEPQFRLLHQIKA-- 1001
Query: 2452 LNDLRRENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFH 2631
+++++ T +++ + A + S + +KD LLF+K R VI L ++L E H
Sbjct: 1002 ---IQKQDPTLVKIRM--ECAQHSQPGSHYTIKDDLLFWKQRIVIPHDGALIQQVLYELH 1056
Query: 2632 STPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVP 2811
++P+ GH GI RT+AR+ A FYW M+KD+ E+V C+ICQ+ K + PAGLLQPLP+P
Sbjct: 1057 TSPLGGHAGITRTVARVKAQFYWSDMKKDIVEYVQNCEICQKAKTANTLPAGLLQPLPIP 1116
Query: 2812 ALVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKL 2991
+ VW+++ MDFITGL +G+ VILVV+DRL K AHF L T +T++ AE F +VKL
Sbjct: 1117 SQVWEDVAMDFITGLPLSHGYTVILVVIDRLTKYAHFIPLKTDYTSKIVAEAFMHHIVKL 1176
Query: 2992 HGFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFT 3171
HG P I+SDRD +F SNFW+QL K GT+L S+AYHPQ+DGQ+EV+NR LE +LRCFT
Sbjct: 1177 HGMPKSIVSDRDKVFTSNFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNRTLELFLRCFT 1236
Query: 3172 QNQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQ 3351
N PK W K L W+E+ YNT + +S MTPF+ALYGR PP + Y A+ E L
Sbjct: 1237 FNNPKAWYKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPTLVRYEAQAGDPPALQEELM 1296
Query: 3352 NRAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLT 3531
R +LL+ LK+NL +AQ M ++A+ HRR+++ VGD VLVKLQPYRQ S+A R NQKL
Sbjct: 1297 GRDKLLQQLKSNLERAQQYMKRQADKHRRDIKLQVGDLVLVKLQPYRQQSLALRKNQKLG 1356
Query: 3532 RRYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTLRRRVF*TSP 3711
RY+GPF++L KVG VAY+L LP +KIHPVFH+S LKPFKG + + L + T P
Sbjct: 1357 MRYFGPFEILAKVGEVAYKLKLPDHAKIHPVFHISQLKPFKGISQDQSLPLPLTMSDTGP 1416
Query: 3712 SI 3717
I
Sbjct: 1417 LI 1418
Score = 115 bits (288), Expect = 6e-22
Identities = 58/197 (29%), Positives = 111/197 (56%), Gaps = 8/197 (4%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVD 445
++R++ E + ++++GLC+ CD+K++ H+C + L+L S E D
Sbjct: 282 IKRISPAEMQIRRDKGLCYWCDEKFSFTHKCPNRQLMLLQYDDNETQLFDG---SPEPPD 338
Query: 446 TITADVS--------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAER 601
+ T + S+N++ G +N +R G + ++Q+LID GS+ NF++P++A+
Sbjct: 339 SPTNSLDTNIPDHHLSMNAMKGTSNMGVIRFVGSIEHIEVQILIDGGSSDNFVQPRIAKF 398
Query: 602 IGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWL 781
+ L F+V VGNG+ + + + Q+P+ +QG + V ++LP+ G DVVLG WL
Sbjct: 399 LKLPIEPAPVFKVLVGNGEIMNAEGVIKQLPIDIQGHKLEVPAFLLPVAGVDVVLGASWL 458
Query: 782 QGLGKVTHEYSTMSMEF 832
LG +Y++++++F
Sbjct: 459 ATLGPHVADYASLTLKF 475
>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
Length = 1853
Score = 970 bits (2508), Expect = 0.0
Identities = 491/948 (51%), Positives = 641/948 (67%), Gaps = 5/948 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G V++ G+ + +L+QL+ L+ + + + + + + ++
Sbjct: 482 GEVVQIAGTPKPSPEEASLHQLKRLVSTNALDTFFHI------------QASPSSPDNSP 529
Query: 1021 DVPDP-MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEK 1197
DP ++ +L +S+LF PT LPPPR DHRI L S P+NVRPYRYP+FQK E+E
Sbjct: 530 PPDDPEIQLLLQRFSKLFETPTSLPPPRLTDHRIPLLEGSNPVNVRPYRYPHFQKREIET 589
Query: 1198 LVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLD 1377
+ EML+QG+I+PS S +SSPVLLV+KKDG +RFCVDYRALN I VKD+FPIP IDELLD
Sbjct: 590 QIAEMLQQGLIQPSSSAFSSPVLLVRKKDGAWRFCVDYRALNTITVKDRFPIPAIDELLD 649
Query: 1378 ELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMN 1557
EL YF+KLDLR+GY+QIRM P D++KTAFRT GHYEFLVMPFGL NAPSTFQ+ MN
Sbjct: 650 ELYGTNYFSKLDLRAGYHQIRMEPHDIHKTAFRTHLGHYEFLVMPFGLCNAPSTFQSTMN 709
Query: 1558 QVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEY 1737
+F +LR FVIVFFDDIL+Y+ H++H+ V CL + F +KLSKC+F Q ++ Y
Sbjct: 710 VIFQPYLRHFVIVFFDDILVYSRTKAEHLKHLETVFQCLLENCFILKLSKCSFAQNSISY 769
Query: 1738 LGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLL 1917
LG IV V D KI AM WP P TLKQLRGFLGLTG+YR+F++ YA IA PLT+LL
Sbjct: 770 LGHIVSAEGVGPDPEKIEAMVNWPPPTTLKQLRGFLGLTGFYRKFVKDYAIIAQPLTELL 829
Query: 1918 CKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLS 2097
KDAF W+++A VAF LK M +APVL+LP+F E+F++ETDAS +G+GAVL+Q HP+
Sbjct: 830 KKDAFQWSEQAQVAFDHLKAAMTKAPVLALPNFEEDFMIETDASGIGMGAVLIQNNHPIC 889
Query: 2098 FFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPE 2277
+FS+K K+ AS Y++EL AIT +V KWR YLLGR F++ TD +S++EL QV+ TPE
Sbjct: 890 YFSQKFCPKLMNASAYVRELCAITSAVKKWRTYLLGRKFVVHTDQRSLRELMTQVIQTPE 949
Query: 2278 QQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISC---D 2448
QQ Y+ KL+GY + I+++ G N ADALSRV E NF + I+
Sbjct: 950 QQFYLAKLLGYSYEIKYKPGTQNRVADALSRVHE------------NFPSVMAITIPHWK 997
Query: 2449 LLNDLRRENATDLELARWHDHAINEPR-VSDFQVKDGLLFFKHRYVIGRRSELKSRILQE 2625
L L+ E D E+ N+P +F++ GLL+FK R I S K+ +L+E
Sbjct: 998 FLEKLQAEINQDSEVKDLMSKVANDPNSYPNFKIIKGLLYFKGRLYIPASSSFKNILLEE 1057
Query: 2626 FHSTPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLP 2805
H+TP+ GH GI+RT R+ FYW G+++DV +V C CQQ K T P GLLQPLP
Sbjct: 1058 IHATPVGGHSGIQRTYGRMKENFYWVGLKQDVVNYVNSCHTCQQTKDPTHAPYGLLQPLP 1117
Query: 2806 VPALVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVV 2985
+P +W++I+MDFI GL + VI VVVDR K+AHFG LPTGFTA + AELFT MV
Sbjct: 1118 IPKHIWEDISMDFIVGLPSFQHYTVIFVVVDRFSKAAHFGMLPTGFTAVKVAELFTTMVC 1177
Query: 2986 KLHGFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRC 3165
KLHG P I+SDRDPIFLS FW++L SGT L STAYHPQ+DGQTEVVN+ L+QYLRC
Sbjct: 1178 KLHGMPHSIVSDRDPIFLSKFWQELFHLSGTKLRMSTAYHPQSDGQTEVVNKTLQQYLRC 1237
Query: 3166 FTQNQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEI 3345
F +QPKRW K + WAE+ YNT H+S +PFQ +YG+ PP +P Y+ + ++A+D
Sbjct: 1238 FVHDQPKRWGKYIHWAEWHYNTAIHTSTGYSPFQVVYGKPPPSLPQYLAGTSQLEALDSE 1297
Query: 3346 LQNRAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQK 3525
L NR +L+ LK L++AQ M A+ HR F GD V VKL+PYRQ S+ + K
Sbjct: 1298 LSNREIILQNLKKKLLKAQQNMKIYADQHRSPHTFKTGDLVYVKLRPYRQTSLPAQRTHK 1357
Query: 3526 LTRRYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATE 3669
L++R+YGPFK+L ++G VA+ L LPPESKIHPVFHVS LKP A++
Sbjct: 1358 LSKRFYGPFKLLRQIGDVAFELELPPESKIHPVFHVSKLKPCHDPASK 1405
Score = 123 bits (309), Expect = 2e-24
Identities = 68/217 (31%), Positives = 117/217 (53%), Gaps = 28/217 (12%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQK------------YTANHRCKGKFLILFXXXXXXXXX 409
++RL+ E + ++E+GLC+NCD+ + N+ + + + F
Sbjct: 262 IKRLSPAELQARREQGLCYNCDEPNYFLLLTPPKTLHPHNNPPQTRPKLAFMPLWATLSP 321
Query: 410 XXXXXXSVEVVDTITADVS----------------SLNSLAGATNPRSLRLDGRVGENQI 541
+ +T D + SL++L G P++LR+ G V ++ I
Sbjct: 322 KPFKANTTLSQLLLTLDTTQNSAPPQQPISNQAQISLHALMGHPIPQTLRVVGHVAKSPI 381
Query: 542 QVLIDSGSTHNFIKPKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFL 721
VLIDSGSTHNFI+ ++A+++GL +F+V VGNG+ L C C + +TL +FL
Sbjct: 382 TVLIDSGSTHNFIQDRIAKQLGLKLEPAQEFQVLVGNGEELQCSYFCPNLAITLGSNKFL 441
Query: 722 VDLYILPIEGPDVVLGIQWLQGLGKVTHEYSTMSMEF 832
VD+++LP+ G ++VLG+QWLQ LG + ++ ++M+F
Sbjct: 442 VDVFVLPLSGAELVLGVQWLQTLGPILTDFEKLTMKF 478
>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1474
Score = 969 bits (2505), Expect = 0.0
Identities = 491/947 (51%), Positives = 646/947 (68%), Gaps = 4/947 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G+ + L+G ++QLQ L+ + + + + + Q EE
Sbjct: 455 GQQIHLKGVPKANPEEANIHQLQRLVSTNAIDTLLNLQLI-------------QPEEPSN 501
Query: 1021 DVPDP---MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEM 1191
P P + +L ++S +F PT LPP R VDH+I L PN+ P+NVRPYRYP FQK E+
Sbjct: 502 SNPHPDERINKLLTKFSTIFKTPTHLPPQRPVDHKIPLLPNTNPVNVRPYRYPQFQKKEI 561
Query: 1192 EKLVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDEL 1371
E ++EML G+I+ S S +SSPVLLV+KKDGT+RFCVDYRALNA+ KD+FPIP IDEL
Sbjct: 562 ETQIREMLANGLIQHSSSAFSSPVLLVRKKDGTWRFCVDYRALNAVTSKDRFPIPAIDEL 621
Query: 1372 LDELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAA 1551
LDEL +FTKLDLRSGY+QIRM D++KTAFRT GHYEF+VMPFGL NAPSTFQ+
Sbjct: 622 LDELYGTCWFTKLDLRSGYHQIRMAQEDIHKTAFRTHQGHYEFMVMPFGLCNAPSTFQST 681
Query: 1552 MNQVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTV 1731
MN +F FLR+FVIVFFDDIL+Y+ L++H++H+ VL CL F +K SKC+F QT++
Sbjct: 682 MNLIFEPFLRRFVIVFFDDILVYSPTLDTHLQHLETVLQCLLDNEFCLKASKCSFAQTSI 741
Query: 1732 EYLGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTD 1911
+YLG IV V D +KI+AM WP P +KQLRGFLGLTG+YR+F+R YA++AAPLT
Sbjct: 742 DYLGHIVSAEGVGPDPSKISAMVNWPPPTNVKQLRGFLGLTGFYRKFVRNYASLAAPLTS 801
Query: 1912 LLCKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHP 2091
LL +DAF WT+ A AF LK+ M E PVL LP+F E+F++ETDAS VG+GAVLMQ GHP
Sbjct: 802 LLKRDAFEWTERAQQAFEGLKRAMTEVPVLGLPNFDEKFILETDASGVGMGAVLMQSGHP 861
Query: 2092 LSFFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHT 2271
+ +FSK+ +M ASTY++EL AIT +V KWR YLLG F I TD +S++EL QV+ T
Sbjct: 862 ICYFSKQFCPRMLQASTYVRELCAITTAVKKWRTYLLGNTFAIYTDQRSLRELMTQVIQT 921
Query: 2272 PEQQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDL 2451
PEQQ Y+ KL+GY + I ++ G N ADALSRV + +++ D
Sbjct: 922 PEQQFYLAKLLGYSYEIIYKPGPQNRVADALSRV--------------HCLVLTIPQMDF 967
Query: 2452 LNDLRRENATDLELARWHDHAINEP-RVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEF 2628
L +++ A D E ++ +P S+F++ +GLLFFK + I S LK +L+EF
Sbjct: 968 LTTFKQQLAVDTEFQQFLAQVQAKPAEYSEFEIMNGLLFFKGKLFIPATSPLKLTLLEEF 1027
Query: 2629 HSTPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPV 2808
H++ + GH GI RT R+ +W GMR DV FV C ICQQ K + P GLLQPLP+
Sbjct: 1028 HASTIGGHSGIHRTYGRLQENVFWYGMRNDVTHFVKSCSICQQTKPANHSPYGLLQPLPI 1087
Query: 2809 PALVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVK 2988
P VW++I++DFI GL V VI VVVDRL K+AHFG+LPT FTA + A+LF +MV K
Sbjct: 1088 PEKVWEDISLDFIVGLPSVQSHTVIFVVVDRLSKAAHFGSLPTHFTAIKVADLFAKMVCK 1147
Query: 2989 LHGFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCF 3168
LHG P I+SDRDPIFLS FW++L K SGT L STAYHPQ+DGQTE+VN+ L+QYLRCF
Sbjct: 1148 LHGMPRSIVSDRDPIFLSQFWQELFKLSGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCF 1207
Query: 3169 TQNQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEIL 3348
++P +W + L WAE+ YNT H+S ++PFQ +YGR PP + +Y+P +++QA+D L
Sbjct: 1208 VHDKPNQWEQFLHWAEWHYNTAIHTSTGLSPFQIVYGRPPPALADYIPGSSSIQAIDATL 1267
Query: 3349 QNRAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKL 3528
+R +L+ LKN L +AQ M ++A+ HR +F VGD V VKL+PYRQ SV R KL
Sbjct: 1268 IDRDMMLQNLKNKLQKAQAIMKEQADQHRIPHKFKVGDLVFVKLRPYRQNSVMGRRIHKL 1327
Query: 3529 TRRYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATE 3669
++R+YGPFK++ +G VA+ L LPP S+IHPVFHVS LKP E +E
Sbjct: 1328 SKRFYGPFKLIKAIGDVAFELELPPTSRIHPVFHVSQLKPCFDETSE 1374
Score = 160 bits (406), Expect = 8e-36
Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 11/246 (4%)
Frame = +2
Query: 128 PNTLHAKTESVSPRTTPSLQPNFRSPSQHXXXXXXXXXXXXXXXXXVRRLTHEEYRDKKE 307
PN + T S SP T S +P + V+RL+ EE + ++E
Sbjct: 219 PNRTNTATSSQSPNTNSSFKPTMSVVAPKTQTA-------------VKRLSPEELQARRE 265
Query: 308 RGLCFNCDQKYTANHRCKGKFLILFXXXXXXXXXXXXXXXSVEVVDTITADVS------- 466
+GLC+NCD++Y HRCK F +L D I +
Sbjct: 266 KGLCYNCDERYQRGHRCKRLFHLLIVEPEDSTEDATSFHLESSDPDPIVVESKTSESEPD 325
Query: 467 ----SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTAITQF 634
SL++L G T P++LR+ G++ + +LIDSGSTHNF++ +VA ++GLST F
Sbjct: 326 PAQISLHALMGHTIPQTLRVMGQIHNKPVAILIDSGSTHNFLQDRVARQLGLSTEEAHSF 385
Query: 635 RVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVTHEYS 814
+V VGNG+ L C S+C Q L L EF VDL+ILP+ G ++VLG+QWL+ LG + +Y
Sbjct: 386 KVLVGNGEVLNCTSMCPQTTLLLGSHEFSVDLFILPLSGAELVLGVQWLKTLGPIVTDYD 445
Query: 815 TMSMEF 832
++M F
Sbjct: 446 KLTMSF 451
>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
Length = 1531
Score = 964 bits (2492), Expect = 0.0
Identities = 487/941 (51%), Positives = 652/941 (69%), Gaps = 1/941 (0%)
Frame = +1
Query: 850 VKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFRDVP 1029
V L G P + ++ H D + E + + + T + I K + N
Sbjct: 483 VTLVGEPIARPEPAQFHHMKRFHHTDAIEECFAIQWFKDTEAADIFKELPTNT------- 535
Query: 1030 DPMKAVLM-EYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVK 1206
DP A+L+ Y +F PT LPP R +H I L + PI V+PYRYP+ QK ++E +V+
Sbjct: 536 DPEIAMLLYNYQAVFKTPTMLPPTRAHNHAIPLLEGTNPIKVKPYRYPHSQKTQIETMVQ 595
Query: 1207 EMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELG 1386
+ML+ GII+PS SP+SSP++LVKKKDGT+RFC DYRALNAI VKD FPIPT+DELLDEL
Sbjct: 596 DMLQHGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELF 655
Query: 1387 RARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVF 1566
A++F+KLDLRSGY+QI + P D +KTAFRT GHYE+LVMPFGLTNAP+TFQ+ MN +F
Sbjct: 656 GAKHFSKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNTIF 715
Query: 1567 SVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGL 1746
+ LR++V+VFFDDIL+Y+ H++H+ VL L+ YVKLSKC+FG +EYLG
Sbjct: 716 QIVLRKYVLVFFDDILVYSKTWHEHLKHLAAVLQVLKDNELYVKLSKCSFGVLEIEYLGH 775
Query: 1747 IVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKD 1926
+V V DK+KI + +WP PK +KQLRGFLGLTGYYRRFI+ YA IA+PLTDLL KD
Sbjct: 776 VVSGEGVYMDKSKIQVVVDWPSPKNIKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKD 835
Query: 1927 AFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFS 2106
A+ W E AF +LK + APVL+LPDFT+ F++ETDAS +GIGAVL Q+GHP+++FS
Sbjct: 836 AYTWNSEMEAAFQKLKHAITTAPVLALPDFTKPFILETDASGIGIGAVLHQEGHPIAYFS 895
Query: 2107 KKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQI 2286
KKL + + S Y +E+ AI E++ K+R YLLG FIIRTD KS++ L +Q + TP+QQ
Sbjct: 896 KKLVPRNQRKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQALQTPDQQE 955
Query: 2287 YIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLR 2466
++H+ +GY F IE++ G+ N+AADALSR V L+ + ++L+ QI L
Sbjct: 956 WLHRFLGYDFTIEYKPGKENVAADALSR------VMTLAWSEPQYKLLHQIRVAL----- 1004
Query: 2467 RENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMA 2646
++++T LE+ A N S++ +KD LLF+KHR VI + SEL+ ++L E H++P+
Sbjct: 1005 KQDSTLLEI--MEKCAQNSDSNSNYTIKDDLLFWKHRIVIPKHSELRQQVLYELHTSPIG 1062
Query: 2647 GHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWD 2826
GH GI RTLAR+ A FYW M+ D+ ++V C ICQ+ K + PPAGLLQPLP+P+ VW+
Sbjct: 1063 GHAGIARTLARVKAQFYWLDMKTDIAKYVQNCVICQKAKTTNTPPAGLLQPLPIPSQVWE 1122
Query: 2827 EITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPS 3006
++ MDFITGL +G+ ILVV+DRL K AHF L T ++++ AE F + +VKLHG P
Sbjct: 1123 DVAMDFITGLPSSHGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAFMDNIVKLHGMPK 1182
Query: 3007 KIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPK 3186
I+SDRD +F S+FW+QL K GT+L S+AYHPQ+DGQ+EV+N+ LE +LRCFT PK
Sbjct: 1183 SIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFENPK 1242
Query: 3187 RWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAEL 3366
W K L W+E+ YNT + +S MTPF+ALYGR PP I Y + + E L R +
Sbjct: 1243 SWCKALAWSEFWYNTAFQTSIGMTPFKALYGRDPPAIIRYEIQASDSPTLQEKLMERDRI 1302
Query: 3367 LRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYG 3546
++ LK NL +AQ M ++A+ HR +V+ VGD VLVKLQPYRQ SVA R NQKL +Y+G
Sbjct: 1303 IQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDWVLVKLQPYRQQSVALRKNQKLGMKYFG 1362
Query: 3547 PFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATE 3669
PF+V+ KVG VAY+L LP +KIHPVFHVS LKPFKG+ E
Sbjct: 1363 PFEVIAKVGEVAYKLKLPDHAKIHPVFHVSQLKPFKGDNQE 1403
Score = 119 bits (297), Expect = 6e-23
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 6/267 (2%)
Frame = +2
Query: 50 TTQLHNQAQYHYSGPSNRPNNSLITQPNTLHAKTESVSPRTTPSLQ-PNFRSPSQHXXXX 226
TT + Q Y + +N+P N+ K E+ + T P L P R SQ
Sbjct: 232 TTTMKPQKPYTQTYSTNKPYNN----------KPENSTRNTAPILNTPPTRPMSQFQKNP 281
Query: 227 XXXXXXXXXXXXXVRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILFXXXXXXXX 406
V+R++ E + ++++GLC+ CD K++ H+C + L+L
Sbjct: 282 N------------VKRISPAEMQLRRDKGLCYWCDDKFSFTHKCPNRQLMLLQYEDSEDQ 329
Query: 407 XXXXXXXSVE-VVDTITADVS----SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTH 571
+ + +T ++ S++++ G+++ LR G + Q+Q+LID GS+
Sbjct: 330 VLDEITDPPDPTTNGLTTNLPKLHLSMSAMKGSSHMGVLRFTGAIEHIQVQILIDGGSSD 389
Query: 572 NFIKPKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEG 751
NF++P++A+ + L F+V VGNG+ + + + Q+PL +QG V +Y+LP+ G
Sbjct: 390 NFVQPRIAKFLKLPIEPAPIFKVLVGNGEVMTAEGIVKQLPLDVQGHRLQVPVYLLPVAG 449
Query: 752 PDVVLGIQWLQGLGKVTHEYSTMSMEF 832
DV+LG WL LG +Y++++++F
Sbjct: 450 ADVILGASWLSTLGPHVADYASLTIKF 476
>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1240
Score = 964 bits (2491), Expect = 0.0
Identities = 489/963 (50%), Positives = 663/963 (68%), Gaps = 4/963 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G+ V L G + L+ L + D + E + V +L T + I F+
Sbjct: 208 GKFVTLVGESEVRPSAAQFHHLKRLQNTDAIDECFTVQWLKSTEITDI----------FK 257
Query: 1021 DVP---DPMKAVLME-YSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGE 1188
D P +P A+L+ Y +LF P+ LPP R+ +H I L + P+ V+PYRYP+ QK +
Sbjct: 258 DFPTNIEPEIAILLHTYKDLFNTPSALPPSRSHNHTIPLIEGANPVKVKPYRYPHSQKEQ 317
Query: 1189 MEKLVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDE 1368
+E +V++ML+QGII+PS SP+SSP++LVKKKDGT+RFC DYRALNA+ +KD FPIPT+DE
Sbjct: 318 IETMVQDMLQQGIIQPSTSPFSSPIVLVKKKDGTWRFCTDYRALNALTIKDSFPIPTVDE 377
Query: 1369 LLDELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQA 1548
LLDEL ARYF+KLDLRSGY+QI +HP+D YKTAFRT GHYE+LVMPFGLTNAP+TFQ+
Sbjct: 378 LLDELFGARYFSKLDLRSGYHQILLHPQDRYKTAFRTHHGHYEWLVMPFGLTNAPATFQS 437
Query: 1549 AMNQVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTT 1728
MN +F LR++V+VFFDDILIY+S+ + H+ H+ VL LQ +VKLSKC+FG +
Sbjct: 438 LMNHIFQHVLRKYVLVFFDDILIYSSSWQDHLTHLDAVLKVLQDNSLFVKLSKCSFGVSE 497
Query: 1729 VEYLGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLT 1908
+EYLG +V V D++K+ A+ W P +KQLRGFLGLTGYYRRFI+ YA IAAPLT
Sbjct: 498 IEYLGHMVTGQGVSMDRDKVQAVLNWSTPTNVKQLRGFLGLTGYYRRFIKSYAKIAAPLT 557
Query: 1909 DLLCKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGH 2088
DLL K+++ W D+A++AF QLK+ + APVL+LP+F + F++ETDAS VGIGAVL Q H
Sbjct: 558 DLLKKESYRWNDQADIAFQQLKEAVTSAPVLALPNFHKPFILETDASGVGIGAVLHQDNH 617
Query: 2089 PLSFFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVH 2268
P+++FSKKL + + S Y +E+ AI E++ K+R YLLG FIIRTD KS++ L Q +
Sbjct: 618 PIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHRFIIRTDQKSLRSLMDQSLQ 677
Query: 2269 TPEQQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCD 2448
TPEQQ ++HK +GY F IE++ G+ NLAADALSR+ E + Q + Q +
Sbjct: 678 TPEQQEWLHKFLGYDFVIEYKPGKENLAADALSRLMTLAWSEPQYNFTQQVKEAIQQDDN 737
Query: 2449 LLNDLRRENATDLELARWHDHAINEPRVSDFQVKDGLLFFKHRYVIGRRSELKSRILQEF 2628
LL +++ + +++ V++G+L++KHR VI ++ L +IL+EF
Sbjct: 738 LLEIIQK--------------CLQGLAPTNYTVREGILYWKHRMVIPPKAALIQQILEEF 783
Query: 2629 HSTPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPV 2808
H++P+ GH G+ RTLARI + FYW M+KD+ ++V C +CQQ K + PAGLLQPLP+
Sbjct: 784 HTSPIGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTTNTLPAGLLQPLPI 843
Query: 2809 PALVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVK 2988
P+ VW++I MDFITGL G+ I+VVVDRL K AHF A+ T +T++ AE F VVK
Sbjct: 844 PSQVWEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAHFIAMKTDYTSKSVAEAFMHNVVK 903
Query: 2989 LHGFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCF 3168
LHG P I+SDRD +F S FW+ L K GTTL ++AYHPQ+DGQTEV+N+ LE YLRCF
Sbjct: 904 LHGMPKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSAYHPQSDGQTEVLNKGLELYLRCF 963
Query: 3169 TQNQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEIL 3348
+ N PK W K+L W+E+ YNT + +S MTPF+ALYGR PP + Y+ + + E L
Sbjct: 964 SFNNPKSWFKMLSWSEFWYNTAFQTSIGMTPFKALYGRDPPYLTRYVAQASDPPTLQEEL 1023
Query: 3349 QNRAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKL 3528
R ++L+ LK+NL++AQ M ++A+ HR ++ +GD VLVKLQPYRQ SVA R NQKL
Sbjct: 1024 MERDKILQQLKDNLIRAQQYMKKQADKHRSDISLKIGDLVLVKLQPYRQHSVALRKNQKL 1083
Query: 3529 TRRYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKPFKGEATETVSTLRRRVF*TS 3708
RY+GPF+++ +VG VAY+L LP ++KIHPVFHVS LKPFKG A E L +
Sbjct: 1084 GLRYFGPFEIIARVGEVAYKLKLPDDAKIHPVFHVSQLKPFKGVADEQYLPLPLTMTDIG 1143
Query: 3709 PSI 3717
PSI
Sbjct: 1144 PSI 1146
Score = 120 bits (301), Expect = 2e-23
Identities = 57/195 (29%), Positives = 113/195 (57%), Gaps = 6/195 (3%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLIL--FXXXXXXXXXXXXXXXSVEV 439
++R++ E + ++++GLC+ CD+K++ H+C + L+L +
Sbjct: 10 IKRISPAERQLRRDKGLCYWCDEKFSFTHKCPNRQLMLLQYDDNDENSEIDSAIQSPDST 69
Query: 440 VDTITADVS----SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIG 607
D+ T ++ S N++ G ++ LR G + + ++Q+LID GS+ NF++P++A+ +
Sbjct: 70 TDSPTTNIPEHHLSFNAMKGTSHMGILRFTGSIEQIKVQILIDGGSSDNFLQPRIAKCLK 129
Query: 608 LSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQG 787
L + FRV VGNG+ + + + Q+PL +QG + + +Y+LP+ G DV+LG WL
Sbjct: 130 LPVEPASTFRVLVGNGEIMTAEGMINQLPLDIQGHKLEIPVYLLPVAGADVILGASWLAT 189
Query: 788 LGKVTHEYSTMSMEF 832
LG +Y++++++F
Sbjct: 190 LGPHVADYASLTLKF 204
>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1510
Score = 962 bits (2487), Expect = 0.0
Identities = 494/939 (52%), Positives = 644/939 (68%), Gaps = 3/939 (0%)
Frame = +1
Query: 841 GRDVKLQGSGSTTLVPITLNQLQALIHGDEVSEIYEVHFLSLTGCSTINKLVEQNEEHFR 1020
G+ ++L G + ++QLQ L+ D + FL L +L++ H
Sbjct: 461 GQQIQLTGVPKASPAEANIHQLQRLLATDAIDT-----FLHL-------QLIQPEPPHNP 508
Query: 1021 DV-PDP-MKAVLMEYSELFAQPTGLPPPRNVDHRIHLQPNSLPINVRPYRYPYFQKGEME 1194
DP ++ +L +++ LF PT LPP R VDH+I L PN+ PINVRPYRYP+FQK E+E
Sbjct: 509 PSHSDPRVEQLLQQFASLFNSPTHLPPQRPVDHKIPLLPNTNPINVRPYRYPHFQKREIE 568
Query: 1195 KLVKEMLEQGIIRPSHSPYSSPVLLVKKKDGTYRFCVDYRALNAIIVKDKFPIPTIDELL 1374
+K+ML G+I+PS S +SSPVLLV+KKDGT+RFCVDYRALN + KD+FPIP IDELL
Sbjct: 569 SQIKDMLANGLIQPSSSAFSSPVLLVRKKDGTWRFCVDYRALNTLTSKDRFPIPAIDELL 628
Query: 1375 DELGRARYFTKLDLRSGYYQIRMHPRDVYKTAFRTADGHYEFLVMPFGLTNAPSTFQAAM 1554
DEL ++F+KLDLRSGY+QIRM D++KTAFRT GHYEFLVMPFGL NAPSTFQ+ M
Sbjct: 629 DELYGTQWFSKLDLRSGYHQIRMAQEDIHKTAFRTHHGHYEFLVMPFGLCNAPSTFQSTM 688
Query: 1555 NQVFSVFLRQFVIVFFDDILIYNSNLESHVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVE 1734
N +F +LR+FVIVFFDDIL+Y+ L+SH+EH++ V CL F +K SKC+F Q++++
Sbjct: 689 NLIFEPYLRRFVIVFFDDILVYSPTLDSHLEHLKVVFQCLLTHEFCLKQSKCSFAQSSID 748
Query: 1735 YLGLIVKEGQVMADKNKITAMSEWPQPKTLKQLRGFLGLTGYYRRFIRGYATIAAPLTDL 1914
YLG IV V D KI AM WP P +KQLRGFLGLTG+YR+FI YA+IAAPLT L
Sbjct: 749 YLGHIVSAEGVGPDPTKIEAMVSWPVPSNVKQLRGFLGLTGFYRKFICKYASIAAPLTAL 808
Query: 1915 LCKDAFVWTDEANVAFLQLKQVMCEAPVLSLPDFTEEFVVETDASNVGIGAVLMQKGHPL 2094
L +DAF+WTD A AF LK+ M EAPVLSLP+F ++F++ETDAS +G+GAVL+QKGHP+
Sbjct: 809 LKRDAFIWTDAAQQAFDMLKRAMSEAPVLSLPNFEDQFILETDASGMGMGAVLIQKGHPI 868
Query: 2095 SFFSKKLGVKMRAASTYIKELYAITESV*KWRQYLLGRFFIIRTDHKSIKELFQQVVHTP 2274
+FSK+ +M ASTY++EL AIT +V KWR YLLG FII TD +S++EL QV+ TP
Sbjct: 869 CYFSKQFCPRMLVASTYVRELCAITTAVKKWRTYLLGNTFIIYTDQRSLRELMTQVIQTP 928
Query: 2275 EQQIYIHKLMGYHFRIEFRSGRTNLAADALSRVEEETGVEELSDAAQNFQLISQISCDLL 2454
EQQ Y+ KL+GY + I ++ G N ADALSRV + I+ D L
Sbjct: 929 EQQFYLAKLLGYSYEIMYKPGPQNRVADALSRV--------------HCLAITVPHLDFL 974
Query: 2455 NDLRRENATDLELARWHDHAINEPRV-SDFQVKDGLLFFKHRYVIGRRSELKSRILQEFH 2631
+ L+ + D E + + P F++ D LLFFK + I S LK +L+EFH
Sbjct: 975 HTLKEQLVQDDEFQQLLTNVKENPDAHMGFEILDDLLFFKGKLFIPSNSPLKVTLLEEFH 1034
Query: 2632 STPMAGHPGIKRTLARIAAIFYWQGMRKDVEEFVAKCQICQQMKYSTQPPAGLLQPLPVP 2811
S+ + GH GI RT R+ +W GMR DV +FV C ICQQ K T P GLLQPLP+P
Sbjct: 1035 SSTIGGHSGIHRTFGRLQENVFWHGMRNDVTQFVKSCAICQQTKPPTHSPYGLLQPLPIP 1094
Query: 2812 ALVWDEITMDFITGLQEVNGFLVILVVVDRLIKSAHFGALPTGFTAQRTAELFTEMVVKL 2991
VW++I++DF+ GL V+LVVVDRL K+AHFG LPT FTA + A+LF +MV KL
Sbjct: 1095 DKVWEDISLDFVVGLPSFQTHTVVLVVVDRLSKAAHFGLLPTHFTAAKVADLFAKMVCKL 1154
Query: 2992 HGFPSKIISDRDPIFLSNFWKQLLKQSGTTLHHSTAYHPQTDGQTEVVNRCLEQYLRCFT 3171
HG P I+SDRDPIFLS+FW++L + SGT L STAYHPQ+DGQTE VN+ L+QYLRCF
Sbjct: 1155 HGMPRSIVSDRDPIFLSHFWQELFRLSGTKLRMSTAYHPQSDGQTENVNKVLQQYLRCFV 1214
Query: 3172 QNQPKRWIKLLKWAEYSYNTNYHSSAQMTPFQALYGRVPPIIPNYMPHVATVQAVDEILQ 3351
++PK+W L WAE+ YNT H+S ++P++ +YGR PP + +Y+P + +QAVD L
Sbjct: 1215 HDKPKQWGHYLHWAEWHYNTAIHTSTGISPYEVVYGRPPPTLADYVPGSSKLQAVDATLT 1274
Query: 3352 NRAELLRILKNNLVQAQNRMVQRANLHRREVQFLVGDEVLVKLQPYRQLSVARRSNQKLT 3531
R ++ +LKN L++AQN M + A+L R QF VGD V VKL+PYRQ SV R KL+
Sbjct: 1275 ERDIVIEVLKNKLLKAQNTMKEYADLKRIPHQFKVGDWVFVKLRPYRQNSVLGRRFHKLS 1334
Query: 3532 RRYYGPFKVLDKVGLVAYRLGLPPESKIHPVFHVSLLKP 3648
+R+YGPFK++ +G VA+ L LP S+IHPVFHVS LKP
Sbjct: 1335 KRFYGPFKLVRAIGEVAFELELPDTSRIHPVFHVSQLKP 1373
Score = 151 bits (381), Expect = 7e-33
Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 14/203 (6%)
Frame = +2
Query: 266 VRRLTHEEYRDKKERGLCFNCDQKYTANHRCKGKFLILF---XXXXXXXXXXXXXXXSVE 436
V+RL+ +E + ++E+GLC+NCD+ Y HRCK F IL VE
Sbjct: 255 VKRLSPDELQARREKGLCYNCDETYQRGHRCKRSFHILIVEPDDVVEDASSFQLDGTQVE 314
Query: 437 VVDTITADVS-----------SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIK 583
+ + V SL++L G T P++LR+ G++ + + +LIDSGSTHNF++
Sbjct: 315 LEPVVDPTVQTTDPDPDPAQISLHALMGHTIPQTLRVMGQIHNSPVAILIDSGSTHNFLQ 374
Query: 584 PKVAERIGLSTTAITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVV 763
+VA ++GL T FRV VGNG+ L C ++C Q L L F VDL++LPI G ++V
Sbjct: 375 DRVARQLGLKTEQAHSFRVLVGNGEELQCTAMCPQTKLLLGSHLFTVDLFVLPISGAELV 434
Query: 764 LGIQWLQGLGKVTHEYSTMSMEF 832
LG+QWL+ LG V +Y ++M F
Sbjct: 435 LGVQWLKTLGPVITDYEKLTMSF 457
>dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subterraneum]
Length = 1160
Score = 961 bits (2485), Expect = 0.0
Identities = 490/977 (50%), Positives = 659/977 (67%), Gaps = 27/977 (2%)
Frame = +1
Query: 820 VYGVPMGGRDVKLQGSGSTTLVP------------------ITLNQLQALI----HGDEV 933
VY +P+ G D+ L + TL P ITL+ ++++ H +
Sbjct: 156 VYLLPVVGADLILGATWLATLGPHVADYQALCLKFFYNGKFITLHGEKSILPQQAHLHHM 215
Query: 934 SEIYEVHFLSLTGCSTINKLVEQ-NEEHFRDVPDPMKA----VLMEYSELFAQPTGLPPP 1098
+Y+ + ++ C I++ + +++ ++P+ M+ +L Y +F +PTGLPPP
Sbjct: 216 RRLYQTN--AIEACFAIHRADPMIHLDNWLELPENMEPEMVLLLNNYKAVFHKPTGLPPP 273
Query: 1099 RNVDHRIHLQPNSLPINVRPYRYPYFQKGEMEKLVKEMLEQGIIRPSHSPYSSPVLLVKK 1278
R +H I L + + VRPYRYP QK ++E +++EML +GII+PS+SP+SSP++LVKK
Sbjct: 274 RQQNHTIPLLGGAKHVKVRPYRYPQSQKEQIELMIQEMLAEGIIQPSNSPFSSPIVLVKK 333
Query: 1279 KDGTYRFCVDYRALNAIIVKDKFPIPTIDELLDELGRARYFTKLDLRSGYYQIRMHPRDV 1458
KDGT+RFC DYRALNAI +KD FP+PT+DELLDEL A+ F+KLDLRSGY+QI + P D
Sbjct: 334 KDGTWRFCTDYRALNAITIKDSFPMPTVDELLDELFGAQCFSKLDLRSGYHQILVEPADR 393
Query: 1459 YKTAFRTADGHYEFLVMPFGLTNAPSTFQAAMNQVFSVFLRQFVIVFFDDILIYNSNLES 1638
YKTAFRT GHYE+LVMPFGLTNAP++FQ MNQ+F LR++V+VFFDDIL+Y+ + +
Sbjct: 394 YKTAFRTHQGHYEWLVMPFGLTNAPASFQCLMNQIFQPLLRKYVLVFFDDILVYSPSFST 453
Query: 1639 HVEHVRQVLDCLQKQRFYVKLSKCTFGQTTVEYLGLIVKEGQVMADKNKITAMSEWPQPK 1818
H++H+ VL LQ +VKLSKC+FG V+YLG V V DK K+ + +WP+P
Sbjct: 454 HLQHLETVLQILQHHTLFVKLSKCSFGMKEVDYLGHTVSGSGVAMDKLKVQTVLDWPKPT 513
Query: 1819 TLKQLRGFLGLTGYYRRFIRGYATIAAPLTDLLCKDAFVWTDEANVAFLQLKQVMCEAPV 1998
+KQLRGFLGLTGYYRRFI+ YATIA PLT+LL K+AF W A AF LK + APV
Sbjct: 514 NVKQLRGFLGLTGYYRRFIKSYATIATPLTNLLKKEAFEWNSNAEQAFSHLKSAITSAPV 573
Query: 1999 LSLPDFTEEFVVETDASNVGIGAVLMQKGHPLSFFSKKLGVKMRAASTYIKELYAITESV 2178
L+LP F + F +ETDAS G+GAVL Q GHP++FFSKK+ +M+ S Y +EL+AITE++
Sbjct: 574 LALPQFNQPFTLETDASGTGVGAVLSQGGHPIAFFSKKMVPRMQKQSAYTRELFAITEAI 633
Query: 2179 *KWRQYLLGRFFIIRTDHKSIKELFQQVVHTPEQQIYIHKLMGYHFRIEFRSGRTNLAAD 2358
K+R YLLG F I+TD KS++ L Q + TPEQQ ++HK +GY F IE++ G+ N+AAD
Sbjct: 634 AKFRHYLLGHKFTIKTDQKSLRSLMDQSLQTPEQQAWLHKFIGYDFNIEYKPGKENVAAD 693
Query: 2359 ALSRVEEETGVEELSDAAQNFQLISQISCDLLNDLRRENATDLELARWHDHAINEPRVSD 2538
ALSRV S+ L++LR + D +L + +PR
Sbjct: 694 ALSRV--------------LLVAWSEPKLQFLDELRAATSNDADL---RTMSSQDPR--- 733
Query: 2539 FQVKDGLLFFKHRYVIGRRSELKSRILQEFHSTPMAGHPGIKRTLARIAAIFYWQGMRKD 2718
+ DGL+FF +R ++ ELK +IL EFHS+P+ GH GI RTLARI+A FYW M++D
Sbjct: 734 YVHHDGLIFFNNRIMVPTHQELKEKILFEFHSSPIGGHAGITRTLARISAQFYWVNMKQD 793
Query: 2719 VEEFVAKCQICQQMKYSTQPPAGLLQPLPVPALVWDEITMDFITGLQEVNGFLVILVVVD 2898
+++FV C ICQQ K+ T+ PAGLLQPLP+P VW+++ MDFITGL +G+ VI+VV+D
Sbjct: 794 IQQFVQNCVICQQAKHETRAPAGLLQPLPIPEQVWEDVAMDFITGLPSSHGYTVIMVVID 853
Query: 2899 RLIKSAHFGALPTGFTAQRTAELFTEMVVKLHGFPSKIISDRDPIFLSNFWKQLLKQSGT 3078
RL K +HF L + ++ AE F + +VKLHG P I+SDRD +F+S FWK L K GT
Sbjct: 854 RLTKYSHFIPLKMDYNSKSVAEAFMKYIVKLHGLPKSIVSDRDKVFVSQFWKDLFKLQGT 913
Query: 3079 TLHHSTAYHPQTDGQTEVVNRCLEQYLRCFTQNQPKRWIKLLKWAEYSYNTNYHSSAQMT 3258
TL S+AYHPQTDGQ+E +N+CLE YLRC T QPK W K L WAEY YNT +H+S MT
Sbjct: 914 TLAMSSAYHPQTDGQSEALNKCLEMYLRCLTFQQPKTWSKALDWAEYWYNTAHHTSLGMT 973
Query: 3259 PFQALYGRVPPIIPNYMPHVATVQAVDEILQNRAELLRILKNNLVQAQNRMVQRANLHRR 3438
PF+ALYGR PP + Y P V + L +R LL +K NL +AQ M +A+ HRR
Sbjct: 974 PFRALYGRHPPSLVRYHPSPHDAATVQQQLSDRDNLLAQIKVNLCRAQQVMKDQADKHRR 1033
Query: 3439 EVQFLVGDEVLVKLQPYRQLSVARRSNQKLTRRYYGPFKVLDKVGLVAYRLGLPPESKIH 3618
V F VGD+VLVKLQPYRQ S+A R +QKL R++GPF +++KVG+VAY+L LP E++IH
Sbjct: 1034 HVVFEVGDKVLVKLQPYRQNSIALRKHQKLGMRFFGPFTIIEKVGMVAYKLQLPTEARIH 1093
Query: 3619 PVFHVSLLKPFKGEATE 3669
PVFH+S LK FKG +E
Sbjct: 1094 PVFHISQLKLFKGSCSE 1110
Score = 117 bits (292), Expect = 2e-22
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 4/190 (2%)
Frame = +2
Query: 275 LTHEEYRDKKERGLCFNCDQKYTANHRCKGKFL-ILFXXXXXXXXXXXXXXXSVEVVDTI 451
++ E + ++E+GLC+ CD K++ NH+C K L IL + D+
Sbjct: 1 MSSAEMQLRREKGLCYTCDDKWSFNHKCPNKHLMILQLAAEDIEEPPANEPPDPPITDSE 60
Query: 452 TADVS---SLNSLAGATNPRSLRLDGRVGENQIQVLIDSGSTHNFIKPKVAERIGLSTTA 622
T + SLN+L G++ +++ G +G +Q+L+D GS+ NF++P++A+ + L +
Sbjct: 61 TKQLELHLSLNALKGSSGVGTIKFTGHIGHIAVQILVDGGSSDNFLQPRIAKFLKLDVES 120
Query: 623 ITQFRVYVGNGDSLICKSLCAQVPLTLQGQEFLVDLYILPIEGPDVVLGIQWLQGLGKVT 802
F+V VGNG SL + + + +T+QG E + +Y+LP+ G D++LG WL LG
Sbjct: 121 APLFKVLVGNGHSLNPEGSISNLCVTVQGHEMHMPVYLLPVVGADLILGATWLATLGPHV 180
Query: 803 HEYSTMSMEF 832
+Y + ++F
Sbjct: 181 ADYQALCLKF 190