BLASTX nr result
ID: Rehmannia29_contig00003549
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00003549
(397 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KJB09790.1| hypothetical protein B456_001G166300 [Gossypium r... 75 1e-29
ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion)... 112 4e-26
ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion)... 111 1e-25
ref|XP_013442825.1| NADH-quinone oxidoreductase protein [Medicag... 67 2e-11
gb|KVH96778.1| hypothetical protein Ccrd_001132, partial [Cynara... 68 2e-10
gb|OIT05606.1| transcription factor myb39 [Nicotiana attenuata] 64 3e-09
gb|OQU84733.1| hypothetical protein SORBI_3004G115100 [Sorghum b... 61 3e-08
emb|CDY67013.1| BnaUnng01800D [Brassica napus] 56 6e-07
>gb|KJB09790.1| hypothetical protein B456_001G166300 [Gossypium raimondii]
Length = 571
Score = 75.1 bits (183), Expect(3) = 1e-29
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +2
Query: 2 VLYRSHSIFLPNEPFFLLILKTGLAFGSKGMVFSMSPDRAP 124
VLYR HSIFLPNEP +LL KTG+AFGSKGMVFSMSPDRAP
Sbjct: 253 VLYRPHSIFLPNEPIYLLTWKTGVAFGSKGMVFSMSPDRAP 293
Score = 70.1 bits (170), Expect(3) = 1e-29
Identities = 37/50 (74%), Positives = 41/50 (82%)
Frame = +3
Query: 144 SGSFGRASTATQAPLFATTREAKDSRVQAENTCIDSGLMPRPTTEARDGA 293
+G +GRAS ATQA LFATTR+AKDSRVQAENTCIDSGLM T A DG+
Sbjct: 297 AGPYGRASPATQAALFATTRKAKDSRVQAENTCIDSGLM----TRADDGS 342
Score = 32.7 bits (73), Expect(3) = 1e-29
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 352 LRPTTTGQFRFWATP 396
LRPTTTGQFRF ATP
Sbjct: 354 LRPTTTGQFRFGATP 368
>ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23374.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 112 bits (280), Expect = 4e-26
Identities = 67/100 (67%), Positives = 70/100 (70%)
Frame = +1
Query: 97 FQYVSR*GPTSPAS**AVLSGGHLLQRKHHCSPPPEKQKIRESRLKIHA*IVV*CQGRRR 276
F+ SR GPT GGHL RK H SPPPEKQKIRESR K A + +GRRR
Sbjct: 480 FRAGSRPGPT----------GGHLPLRKQHGSPPPEKQKIRESRRKRQA-LWSYHKGRRR 528
Query: 277 KLGTEPYEAEVSRTVL*EGSGYLLELRPTTTGQFRFWATP 396
KLGTEPY AEVSRTV EGSGY LELRPTTTGQFRF ATP
Sbjct: 529 KLGTEPYHAEVSRTVPREGSGYPLELRPTTTGQFRFGATP 568
>ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23370.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 111 bits (277), Expect = 1e-25
Identities = 67/100 (67%), Positives = 69/100 (69%)
Frame = +1
Query: 97 FQYVSR*GPTSPAS**AVLSGGHLLQRKHHCSPPPEKQKIRESRLKIHA*IVV*CQGRRR 276
F+ SR GPT GGHL RK H SPPPEKQKIRESR K A +GRRR
Sbjct: 480 FRAGSRPGPT----------GGHLPLRKQHGSPPPEKQKIRESRRKRQAYWSY-HKGRRR 528
Query: 277 KLGTEPYEAEVSRTVL*EGSGYLLELRPTTTGQFRFWATP 396
KLGTEPY AEVSRTV EGSGY LELRPTTTGQFRF ATP
Sbjct: 529 KLGTEPYHAEVSRTVPREGSGYPLELRPTTTGQFRFGATP 568
>ref|XP_013442825.1| NADH-quinone oxidoreductase protein [Medicago truncatula]
gb|KEH16850.1| NADH-quinone oxidoreductase protein [Medicago truncatula]
Length = 556
Score = 67.4 bits (163), Expect(2) = 2e-11
Identities = 39/81 (48%), Positives = 42/81 (51%)
Frame = +1
Query: 154 SGGHLLQRKHHCSPPPEKQKIRESRLKIHA*IVV*CQGRRRKLGTEPYEAEVSRTVL*EG 333
+GGHL QRK HCSPPP+KQKIRES
Sbjct: 294 TGGHLPQRKLHCSPPPDKQKIRES------------------------------------ 317
Query: 334 SGYLLELRPTTTGQFRFWATP 396
SGYLLELRPTTTG+FRF ATP
Sbjct: 318 SGYLLELRPTTTGKFRFGATP 338
Score = 28.9 bits (63), Expect(2) = 2e-11
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 122 PLVRLASERFFRA 160
PLVRLASERFFRA
Sbjct: 275 PLVRLASERFFRA 287
>gb|KVH96778.1| hypothetical protein Ccrd_001132, partial [Cynara cardunculus var.
scolymus]
Length = 699
Score = 67.8 bits (164), Expect = 2e-10
Identities = 35/44 (79%), Positives = 36/44 (81%)
Frame = +1
Query: 265 GRRRKLGTEPYEAEVSRTVL*EGSGYLLELRPTTTGQFRFWATP 396
GRRRKLGTEPY+AEVSR SGYLLELRP TTGQFRF ATP
Sbjct: 318 GRRRKLGTEPYDAEVSR------SGYLLELRPITTGQFRFGATP 355
Score = 57.4 bits (137), Expect = 7e-07
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +3
Query: 144 SGSFGRASTATQAPLFATTREAKDSRVQAENTCIDSGLMPRPTTEARDGAV 296
+G + RAS A QA LFATTREAKD RVQAENT IDSG + TE D V
Sbjct: 282 AGPYERASPARQAALFATTREAKDYRVQAENTYIDSGRRRKLGTEPYDAEV 332
>gb|OIT05606.1| transcription factor myb39 [Nicotiana attenuata]
Length = 373
Score = 63.9 bits (154), Expect = 3e-09
Identities = 31/47 (65%), Positives = 41/47 (87%), Gaps = 2/47 (4%)
Frame = -1
Query: 292 APSRASVVG-LGIRPLSMHVFSAW-TLESFASRVVANNGACVAVDAR 158
APSRAS+V G +PLSMH+FSAW TLES+ASR+V+NNGAC+ V+++
Sbjct: 166 APSRASIVSHFGNKPLSMHIFSAWSTLESYASRMVSNNGACIVVNSK 212
>gb|OQU84733.1| hypothetical protein SORBI_3004G115100 [Sorghum bicolor]
Length = 328
Score = 60.8 bits (146), Expect = 3e-08
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3
Query: 245 YACIFSLDSRIFCFSGGGEQWCLRCSRCPP 156
YAC+F LDSRIFCFSGGGEQ LRC RCPP
Sbjct: 234 YACLFRLDSRIFCFSGGGEQCSLRCGRCPP 263
>emb|CDY67013.1| BnaUnng01800D [Brassica napus]
Length = 187
Score = 56.2 bits (134), Expect = 6e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1
Query: 397 KGWPKSGIDRWWLVEAPVGSHSLLREPYV 311
KGWP+SGIDR LVEAPVGSHSLLREPY+
Sbjct: 74 KGWPQSGIDRGCLVEAPVGSHSLLREPYL 102