BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00002739
         (1081 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP09717.1| unnamed protein product [Coffea canephora]            192   4e-63
emb|CDP14470.1| unnamed protein product [Coffea canephora]            196   7e-58
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...   194   1e-57
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   184   5e-57
ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279...   184   5e-57
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   184   6e-57
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   184   6e-57
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   183   1e-56
gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]           197   2e-56
gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium prat...   197   2e-56
dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subte...   192   5e-56
gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]           202   2e-55
ref|XP_023905045.1| uncharacterized protein LOC112016795 [Quercu...   187   3e-55
gb|PNX73375.1| ribonuclease H, partial [Trifolium pratense]           192   7e-55
ref|XP_023907624.1| uncharacterized protein LOC112019319 [Quercu...   185   1e-54
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           187   2e-54
gb|PNX71213.1| ribonuclease H [Trifolium pratense]                    197   4e-54
dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subt...   186   7e-54
gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]           192   7e-54
gb|PNY07715.1| ribonuclease H [Trifolium pratense]                    191   1e-53

>emb|CDP09717.1| unnamed protein product [Coffea canephora]
          Length = 613

 Score =  192 bits (487), Expect(3) = 4e-63
 Identities = 93/258 (36%), Positives = 155/258 (60%), Gaps = 5/258 (1%)
 Frame = -2

Query: 1056 KKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITGNICKTLAS 877
            +++VF Y+ ++  +R+N+ K+  LSQ G+E+L+KSV   +P+Y MSC+++   +CK + S
Sbjct: 15   QQQVFGYIKDSISRRMNSWKNKLLSQGGKEVLLKSVSMAMPVYTMSCFKLPNKLCKEVTS 74

Query: 876  ICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLWKLMVCPNT 697
            I + +WWG   EG NK+HW SW ++   K++ GLGF++ + FN + LAK +W+++  PN 
Sbjct: 75   IFANYWWGES-EGRNKMHWCSWGRLARDKKEGGLGFRELQNFNKALLAKQVWRVISKPNL 133

Query: 696  LLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKSIRVWDHPW 517
            L+SK+L+AKYF K  +   +     SW+W+S +  R  + +G   K+G+GK+  +W+  W
Sbjct: 134  LVSKVLRAKYFHKESIFKCKIPKCASWIWQSLMNVRDFVRKGTRRKIGNGKATNIWEDNW 193

Query: 516  VRG-----IKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNTPVC 352
            + G     +  + P S    R    V EL+  SG  W+ PLV  I +   A+ IL+ P+ 
Sbjct: 194  IPGNKDGKVTTVMPQSCNIRR----VEELI--SGFRWRIPLVSRIFNRKDAKEILDIPIS 247

Query: 351  FPGQRDKISWLLTKSGVF 298
              G+ D   WL + SG +
Sbjct: 248  IAGREDSNYWLHSGSGTY 265



 Score = 53.1 bits (126), Expect(3) = 4e-63
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = -1

Query: 301 FSVNSAYQEAIQN---HNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNI 131
           ++VNS Y+   Q    H    D    + + + N K WK  WKLK+K KIKHFIWR  + +
Sbjct: 265 YTVNSGYKALCQETSQHKGRRDNEAGTSSANSNEKQWKWLWKLKVKSKIKHFIWRSLNGL 324

Query: 130 L 128
           L
Sbjct: 325 L 325



 Score = 47.8 bits (112), Expect(3) = 4e-63
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -3

Query: 89  DTICNFCGEDNESIDHIFFQCTRAVQCWK 3
           D IC+ CGE  ESI+H+FFQC+RA + WK
Sbjct: 339 DPICDGCGEQEESIEHLFFQCSRAQEVWK 367


>emb|CDP14470.1| unnamed protein product [Coffea canephora]
          Length = 660

 Score =  196 bits (498), Expect(3) = 7e-58
 Identities = 87/265 (32%), Positives = 161/265 (60%), Gaps = 1/265 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+++ ++K+++F ++ E  ++++++ ++  LS AG+E+++K+V   +P Y MS +++  
Sbjct: 49   LPMVISRTKEQIFGFIKENIKRKMHDWRNKLLSTAGKEVMLKAVSMAMPTYAMSVFKLPR 108

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +CK ++++ + +WWG    G NK+HW+SW KM + +   GLGFKD   +N + L K +W
Sbjct: 109  KLCKDISALMANYWWGEA-NGKNKLHWLSWRKMSLSRNAGGLGFKDIEAYNKALLGKQVW 167

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +++  PN L+SK+L+A+YFPK  ++  R K   SW+W+  + AR V+ +G+I ++G+G+S
Sbjct: 168  RILTKPNLLISKVLRARYFPKDSILTCRPKQNASWIWQGLLGARRVVEKGVIRRIGNGRS 227

Query: 540  IRVWDHPWVRGIKFMSPASLETER-EVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
              +W H W+ G     P SL  +   +  V+EL+  S   WK   +    +   AE ILN
Sbjct: 228  TSIWGHRWIPGSSSGRPTSLGPQSYNLKMVNELI--SHHRWKRNTIFQHFNQSDAEKILN 285

Query: 363  TPVCFPGQRDKISWLLTKSGVFLLT 289
             P+   G+ D   W     G++ ++
Sbjct: 286  IPLSLMGREDNYYWQHNPGGIYTVS 310



 Score = 39.7 bits (91), Expect(3) = 7e-58
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 89  DTICNFCGEDNESIDHIFFQCTRAVQCWK 3
           D +C  CGED E+++H+   C  + Q WK
Sbjct: 384 DPVCRLCGEDQETVEHLMLNCQHSQQVWK 412



 Score = 39.3 bits (90), Expect(3) = 7e-58
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 241 PESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           P  +G    + +MW   WKL IK K+K FIW+C    L
Sbjct: 333 PSITGEDQQSRQMWTTLWKLNIKHKVKIFIWKCITGAL 370


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score =  194 bits (494), Expect(3) = 1e-57
 Identities = 94/261 (36%), Positives = 154/261 (59%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ + F Y+ +   KR+   K   LS+AG+EILIKSV+  +P Y MSC+ +T 
Sbjct: 209  LPIYMGRSRSQTFSYLKDRVWKRLQGWKERLLSKAGKEILIKSVVQSIPTYAMSCFDLTK 268

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +C  L S+  +FWW    E  NK+HW+SW  +C  K+Q G+G++D  +FN + LA+  W
Sbjct: 269  TLCNELGSLVCRFWWAQQ-ENENKVHWVSWELLCRRKEQGGIGYRDLHLFNLAMLARQGW 327

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L++ P +L +++L+AKYFP G L+ VR+K   S+ W+S ++    L +GLI++VGDG +
Sbjct: 328  RLIMEPMSLCAQVLRAKYFPTGDLMAVREKPGISYSWRSIVRGIQALKKGLIWRVGDGTN 387

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      V  V++L+D +   W + L+  +      + IL  
Sbjct: 388  IDIWHDPWLPSGITRRPITPRGRTVVNKVTDLIDPTIGKWDKELIEGLFWEEDVKQILTI 447

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            P+   G  D ++W     G+F
Sbjct: 448  PI-RAGVEDGLAWHFDNRGIF 467



 Score = 47.8 bits (112), Expect(3) = 1e-57
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 301 FSVNSAY---QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNI 131
           FSV SAY   ++  + H   +D   SSG  ++    W+  WKL    K+KHFIW   HN 
Sbjct: 467 FSVKSAYHVLEDERRRHKPKQDGASSSGQTNMEKLCWQQIWKLPYLPKVKHFIWHLAHNS 526

Query: 130 L 128
           L
Sbjct: 527 L 527



 Score = 32.0 bits (71), Expect(3) = 1e-57
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 119 LNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
           +++  +G   DT C  C   NE   H F +C    +CW+
Sbjct: 531 MSIQKRGMQIDTRCPVCHRQNEDGGHYFLKCKLMRKCWQ 569


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  184 bits (468), Expect(3) = 5e-57
 Identities = 95/261 (36%), Positives = 147/261 (56%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ K+F Y+ E   +R+   K   LS+AG+EILIK+V   +P + M C+ +T 
Sbjct: 1009 LPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTK 1068

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  ++ + +K+WW +  E  NK+HW+SW+K+ + K   GLGF+D  IFN + LAK  W
Sbjct: 1069 DLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGW 1127

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++L S++L+AKYFP G     +Q +  S+ W+S  K   VL  G+I++VGDG  
Sbjct: 1128 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1187

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      VT V EL+D     W E L+          AI + 
Sbjct: 1188 INIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1247

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            PV      D ++W     G F
Sbjct: 1248 PV-HVEMEDVLAWHFDARGCF 1267



 Score = 47.0 bits (110), Expect(3) = 5e-57
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 301  FSVNSAY--QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+V SAY  Q  ++        P  S  +  +   WK  WKL + GKIKHF+WR  HN L
Sbjct: 1267 FTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1326

Query: 127  LL 122
             L
Sbjct: 1327 AL 1328



 Score = 40.8 bits (94), Expect(3) = 5e-57
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 128  ATNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
            A   NL ++G D DT C  CG  NE   H+FF+C    + W+
Sbjct: 1327 ALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ 1368


>ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279669 [Oryza sativa
            Japonica Group]
          Length = 1587

 Score =  184 bits (468), Expect(3) = 5e-57
 Identities = 95/261 (36%), Positives = 147/261 (56%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ K+F Y+ E   +R+   K   LS+AG+EILIK+V   +P + M C+ +T 
Sbjct: 1009 LPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTK 1068

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  ++ + +K+WW +  E  NK+HW+SW+K+ + K   GLGF+D  IFN + LAK  W
Sbjct: 1069 DLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGW 1127

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++L S++L+AKYFP G     +Q +  S+ W+S  K   VL  G+I++VGDG  
Sbjct: 1128 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1187

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      VT V EL+D     W E L+          AI + 
Sbjct: 1188 INIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1247

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            PV      D ++W     G F
Sbjct: 1248 PV-HVEMEDVLAWHFDARGCF 1267



 Score = 47.0 bits (110), Expect(3) = 5e-57
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 301  FSVNSAY--QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+V SAY  Q  ++        P  S  +  +   WK  WKL + GKIKHF+WR  HN L
Sbjct: 1267 FTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1326

Query: 127  LL 122
             L
Sbjct: 1327 AL 1328



 Score = 40.8 bits (94), Expect(3) = 5e-57
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 128  ATNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
            A   NL ++G D DT C  CG  NE   H+FF+C    + W+
Sbjct: 1327 ALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ 1368


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  184 bits (467), Expect(3) = 6e-57
 Identities = 95/261 (36%), Positives = 147/261 (56%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ K+F Y+ E   +R+   K   LS+AG+EILIK+V   +P + M C+ +T 
Sbjct: 954  LPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTK 1013

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  ++ + +K+WW +  E  NK+HW+SW+K+ + K   GLGF+D  IFN + LAK  W
Sbjct: 1014 DLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGW 1072

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++L S++L+AKYFP G     +Q +  S+ W+S  K   VL  G+I++VGDG  
Sbjct: 1073 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1132

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      VT V EL+D     W E L+          AI + 
Sbjct: 1133 INIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1192

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            PV      D ++W     G F
Sbjct: 1193 PV-HVEMEDVLAWHFDARGCF 1212



 Score = 47.0 bits (110), Expect(3) = 6e-57
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 301  FSVNSAY--QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+V SAY  Q  ++        P  S  +  +   WK  WKL + GKIKHF+WR  HN L
Sbjct: 1212 FTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1271

Query: 127  LL 122
             L
Sbjct: 1272 AL 1273



 Score = 40.8 bits (94), Expect(3) = 6e-57
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 128  ATNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
            A   NL ++G D DT C  CG  NE   H+FF+C    + W+
Sbjct: 1272 ALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ 1313


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  184 bits (467), Expect(3) = 6e-57
 Identities = 95/261 (36%), Positives = 147/261 (56%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ K+F Y+ E   +R+   K   LS+AG+EILIK+V   +P + M C+ +T 
Sbjct: 950  LPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTK 1009

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  ++ + +K+WW +  E  NK+HW+SW+K+ + K   GLGF+D  IFN + LAK  W
Sbjct: 1010 DLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGW 1068

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++L S++L+AKYFP G     +Q +  S+ W+S  K   VL  G+I++VGDG  
Sbjct: 1069 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1128

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      VT V EL+D     W E L+          AI + 
Sbjct: 1129 INIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1188

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            PV      D ++W     G F
Sbjct: 1189 PV-HVEMEDVLAWHFDARGCF 1208



 Score = 47.0 bits (110), Expect(3) = 6e-57
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 301  FSVNSAY--QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+V SAY  Q  ++        P  S  +  +   WK  WKL + GKIKHF+WR  HN L
Sbjct: 1208 FTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1267

Query: 127  LL 122
             L
Sbjct: 1268 AL 1269



 Score = 40.8 bits (94), Expect(3) = 6e-57
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 128  ATNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
            A   NL ++G D DT C  CG  NE   H+FF+C    + W+
Sbjct: 1268 ALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ 1309


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  183 bits (465), Expect(3) = 1e-56
 Identities = 94/261 (36%), Positives = 147/261 (56%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+ +G+S+ K+F Y+ E   +R+   K   LS+AG+EILIK+V   +P + M C+ +T 
Sbjct: 982  LPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTK 1041

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  ++ + +K+WW +  E  NK+HW+SW+K+ + K   GLGF+D  IFN + LAK  W
Sbjct: 1042 DLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGW 1100

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++L S++L+AKYFP G     +Q +  S+ W+S  K   VL  G+I+++GDG  
Sbjct: 1101 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSK 1160

Query: 540  IRVWDHPWVRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILNT 361
            I +W  PW+       P +      VT V EL+D     W E L+          AI + 
Sbjct: 1161 INIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1220

Query: 360  PVCFPGQRDKISWLLTKSGVF 298
            PV      D ++W     G F
Sbjct: 1221 PV-HVEMEDVLAWHFDARGCF 1240



 Score = 47.0 bits (110), Expect(3) = 1e-56
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 301  FSVNSAY--QEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+V SAY  Q  ++        P  S  +  +   WK  WKL + GKIKHF+WR  HN L
Sbjct: 1240 FTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1299

Query: 127  LL 122
             L
Sbjct: 1300 AL 1301



 Score = 40.8 bits (94), Expect(3) = 1e-56
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 128  ATNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCWK 3
            A   NL ++G D DT C  CG  NE   H+FF+C    + W+
Sbjct: 1300 ALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ 1341


>gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1188

 Score =  197 bits (501), Expect(3) = 2e-56
 Identities = 92/262 (35%), Positives = 157/262 (59%), Gaps = 1/262 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            +P++ G+SK+++F+Y+ E   K++   K   LS AGR  LIK+V   +P YLMSC+ I  
Sbjct: 575  MPIVHGRSKQQIFNYIREKIWKKLKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSCFLIPK 634

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +C+ L  +   FWWGS  +   K+HW+ WSK+C  K+  GLGF+D R FN++ LAK  W
Sbjct: 635  GVCEQLEKMICNFWWGSTTD-QRKMHWLKWSKVCNQKRNGGLGFRDLRAFNEALLAKQGW 693

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P +L++++LKAKYFP    ++ + K + S+ W+S ++A +V+ +G  + +GDG+ 
Sbjct: 694  RLITKPTSLVAQVLKAKYFPNESFLNAKHKQVMSYTWRSIMQASWVIKRGSYWSIGDGED 753

Query: 540  IRVWDHPWVRGIKFMSPASLETER-EVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
            I +W+  W++          +     +  V EL+DS+   W   ++  +  P++A+ ILN
Sbjct: 754  INIWEDNWMQQKSATYKGRPKPNNLNLIKVKELMDSNYNEWNTDIINQVFLPYEAQMILN 813

Query: 363  TPVCFPGQRDKISWLLTKSGVF 298
             P+    Q D ++W  T+ G +
Sbjct: 814  IPIIDKTQPDMLTWDCTQDGQY 835



 Score = 38.9 bits (89), Expect(3) = 2e-56
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           +SV S Y   ++  NL    P ++        +W   WKLK+  K  H +WR  HN L
Sbjct: 835 YSVKSGYHAIMEWGNLPNASPSNNSQH-----IWNVLWKLKVPPKHSHLLWRVLHNAL 887



 Score = 33.9 bits (76), Expect(3) = 2e-56
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 116  NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            NL  +G   D +C  C    E+I H+F  C  A Q W
Sbjct: 892  NLFKRGVRCDPLCPRCSNSMETIHHVFLDCEWAKQTW 928


>gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium pratense]
          Length = 548

 Score =  197 bits (501), Expect(3) = 2e-56
 Identities = 92/262 (35%), Positives = 157/262 (59%), Gaps = 1/262 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            +P++ G+SK+++F+Y+ E   K++   K   LS AGR  LIK+V   +P YLMSC+ I  
Sbjct: 33   MPIVHGRSKQQIFNYIREKIWKKLKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSCFLIPK 92

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +C+ L  +   FWWGS  +   K+HW+ WSK+C  K+  GLGF+D R FN++ LAK  W
Sbjct: 93   GVCEQLEKMICNFWWGSTTD-QRKMHWLKWSKVCNQKRNGGLGFRDLRAFNEALLAKQGW 151

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P +L++++LKAKYFP    ++ + K + S+ W+S ++A +V+ +G  + +GDG+ 
Sbjct: 152  RLITKPTSLVAQVLKAKYFPNESFLNAKHKQVMSYTWRSIMQASWVIKRGSYWSIGDGED 211

Query: 540  IRVWDHPWVRGIKFMSPASLETER-EVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
            I +W+  W++          +     +  V EL+DS+   W   ++  +  P++A+ ILN
Sbjct: 212  INIWEDNWMQQKSATYKGRPKPNNLNLIKVKELMDSNYNEWNTDIINQVFLPYEAQMILN 271

Query: 363  TPVCFPGQRDKISWLLTKSGVF 298
             P+    Q D ++W  T+ G +
Sbjct: 272  IPIIDKTQPDMLTWDCTQDGQY 293



 Score = 38.9 bits (89), Expect(3) = 2e-56
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           +SV S Y   ++  NL    P ++        +W   WKLK+  K  H +WR  HN L
Sbjct: 293 YSVKSGYHAIMEWGNLPNASPSNNSQH-----IWNVLWKLKVPPKHSHLLWRVLHNAL 345



 Score = 33.9 bits (76), Expect(3) = 2e-56
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 116 NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
           NL  +G   D +C  C    E+I H+F  C  A Q W
Sbjct: 350 NLFKRGVRCDPLCPRCSNSMETIHHVFLDCEWAKQTW 386


>dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subterraneum]
          Length = 1626

 Score =  192 bits (489), Expect(3) = 5e-56
 Identities = 98/264 (37%), Positives = 153/264 (57%), Gaps = 3/264 (1%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP++ G+SKK++F  V E   K++   K   LS+AG+E LIKSV   +P YLMSCY++  
Sbjct: 1022 LPVIFGRSKKEIFANVQERIWKKIKGWKEKCLSRAGKETLIKSVAQAIPNYLMSCYKLPT 1081

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
              C  + ++ +KFWWG+  E   KIHW+SW+K+   K + GLGF+ F  FN + L K  W
Sbjct: 1082 GCCDNIEAMLAKFWWGTT-EKQRKIHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCW 1140

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++LL+K+ K++YFP+   +        S+ W+S   AR V+  G  + +G+G+ 
Sbjct: 1141 RLLQNPDSLLAKVFKSRYFPRSNFMDASVGYQPSYAWRSLCNAREVIDMGARWLIGNGQD 1200

Query: 540  IRVWDHPWV---RGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAI 370
            + +W+  W+      K  SP S      +  VS+L++     W + L+ N  SPF+AE I
Sbjct: 1201 VHIWNDKWLPEQDKFKVWSPVSNLVPNAM--VSDLINPVTKAWDKNLILNCFSPFEAEQI 1258

Query: 369  LNTPVCFPGQRDKISWLLTKSGVF 298
            LN P+ +    DK+ W   K+G F
Sbjct: 1259 LNIPISWRLPADKLIWHWEKNGEF 1282



 Score = 41.6 bits (96), Expect(3) = 5e-56
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -1

Query: 301  FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            FSV SAY    ++ N  ++ PE+S ++D    +WK  WK+ +   IK+F+WR    IL
Sbjct: 1282 FSVRSAYHMLSEDRN--KNSPEASSSRDQ--LLWKTIWKVNVPNCIKNFLWRVAKAIL 1335



 Score = 34.7 bits (78), Expect(3) = 5e-56
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 125  TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            T   L  KG   DT C  C  D E  +H+F QC  + Q W
Sbjct: 1337 TRGRLEKKGITLDTTCPLCFNDIECNEHLFMQCPLSKQVW 1376


>gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1376

 Score =  202 bits (514), Expect(3) = 2e-55
 Identities = 91/262 (34%), Positives = 156/262 (59%), Gaps = 1/262 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            +P++ G+SKK++F+++ E   +++   K   LS AGR  LIK+V   +P YLMSC+ I  
Sbjct: 760  MPIVYGRSKKQIFNHIKEKIWQKLKGWKEKNLSFAGRSTLIKAVAQAIPTYLMSCFLIPK 819

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             IC  L  +   FWWGS  +   K+HW+ WS +C  K   GLGF+D R FN++ LAK  W
Sbjct: 820  GICDQLEKMICNFWWGSTTDH-RKMHWVKWSNICTQKNNGGLGFRDLRAFNEALLAKQSW 878

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P +L++++LKAKY+PK  L+H +     S+ W+S I+  +++ +G  + +G G++
Sbjct: 879  RLITNPTSLVAQVLKAKYYPKEDLLHAKYSKNMSYTWRSIIQTNWIIKRGSYWTIGSGQN 938

Query: 540  IRVWDHPWVRGIKFMSPASLETER-EVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
              +W+  W++        + +     +T V EL+D++   WKE ++  I  P++A+ IL 
Sbjct: 939  TNIWEDNWIQQASSTYKCNPKPNNLNLTKVQELMDTNNNAWKEDIINQIFQPYEAQMILK 998

Query: 363  TPVCFPGQRDKISWLLTKSGVF 298
             P+    Q D ++W  T+ G++
Sbjct: 999  IPIMDKAQPDTLTWDNTQDGIY 1020



 Score = 35.4 bits (80), Expect(3) = 2e-55
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 301  FSVNSAYQEAIQ-NHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            +SV S Y   ++ +H L  +   S+ ++DL    WK  WKL +  K  H +WR   N L
Sbjct: 1020 YSVKSGYHSIMEWSHTL--NATTSNNSQDL----WKAIWKLNVPPKHTHLLWRVLKNAL 1072



 Score = 28.9 bits (63), Expect(3) = 2e-55
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 116  NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            NL  +G   D +C  C    E+ +H+F  C    Q W
Sbjct: 1077 NLFKRGVRCDPLCPRCTNCLETTNHVFLDCEWTKQVW 1113


>ref|XP_023905045.1| uncharacterized protein LOC112016795 [Quercus suber]
          Length = 1373

 Score =  187 bits (474), Expect(3) = 3e-55
 Identities = 97/269 (36%), Positives = 148/269 (55%), Gaps = 1/269 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP L+G+SK+  F  + E  + +++  K   LSQAG+E+LIK+V   +P Y MS +++  
Sbjct: 760  LPSLVGRSKRNTFRALKERLDNKLSGWKEKLLSQAGKEVLIKAVAQAIPTYTMSVFKLPN 819

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
            ++C  + S    FWWG   EG NK+ W+SW KMC  K+  GLGF+D + FN + LAK  W
Sbjct: 820  SLCDEMTSTVRNFWWGQK-EGRNKMAWLSWEKMCAPKKDGGLGFRDLKAFNMALLAKQGW 878

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L     +L+ ++LKA+YFP    +H       S+ W+S + A+ V+  G  ++VGDG S
Sbjct: 879  RLQSNTRSLVHRVLKARYFPDRDFLHAELGRTPSYAWRSIMAAQDVVKAGHRWQVGDGTS 938

Query: 540  IRVWDHPWV-RGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
            I++W   W+ +   F   ++  T  E   VSEL+D     W   LV+++  P  A  IL 
Sbjct: 939  IQIWRDKWLPKPSTFRVISTPNTLNEAATVSELIDEVTGEWNVDLVKHVFLPDDAHTILG 998

Query: 363  TPVCFPGQRDKISWLLTKSGVFLLTVPIK 277
             P      RD++ W  T  G F +    K
Sbjct: 999  IPRSSKRNRDRMIWAYTPKGTFTVNSAYK 1027



 Score = 40.0 bits (92), Expect(3) = 3e-55
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 301  FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            F+VNSAY+ A+          E + +   + + W+  W L+I  K+K F WR   NIL
Sbjct: 1020 FTVNSAYKVALSLSQ--SKAKEETSDASSHSQFWQKIWSLRIPNKLKTFAWRASRNIL 1075



 Score = 39.3 bits (90), Expect(3) = 3e-55
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 125  TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            T  NLC++G   D  C+ CG + E+  H+F+ C  A + W
Sbjct: 1077 TKANLCSRGVIDDPTCDACGLNAETSGHLFWDCRHAHEVW 1116


>gb|PNX73375.1| ribonuclease H, partial [Trifolium pratense]
          Length = 925

 Score =  192 bits (488), Expect(3) = 7e-55
 Identities = 90/262 (34%), Positives = 157/262 (59%), Gaps = 1/262 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            +P  +G+SKK++F+++ E   K++   K   LS AGR  LIK+V   +P YLMS + I  
Sbjct: 316  MPTAMGRSKKQIFNFIREKIWKKLKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLIPK 375

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +C+ L  +   FWWGS  +   KIHW+ WSK+C  K+  G+GF+D R FN++ LAK  W
Sbjct: 376  GVCEQLEQMICNFWWGSTTDN-RKIHWIRWSKVCTQKKIGGMGFRDLRAFNEALLAKQGW 434

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  PN+L+++LLKAKY P+   +  + K   S+ WKS +++ +V+ +G  + +G G+ 
Sbjct: 435  RLITNPNSLVAQLLKAKYHPQEVFLKAKHKQQMSYTWKSILQSSWVIKRGSYWTIGSGQE 494

Query: 540  IRVWDHPWVRGIKFMSPASLETER-EVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
              +W+  W++     + +S + +   +  V EL++++   W E ++  + +P+ A+ IL 
Sbjct: 495  TNIWEDNWIQQKGNSTRSSPKPDNCNLLMVKELMENNYNEWNETIINQVFTPYVAQMILQ 554

Query: 363  TPVCFPGQRDKISWLLTKSGVF 298
             P+    Q D ++W  TK G++
Sbjct: 555  IPIIDKTQPDTLTWDGTKDGIY 576



 Score = 38.5 bits (88), Expect(3) = 7e-55
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           +SV S Y   I  ++       +S N  + +  WK  WKLK+  K  H +WR  +N +
Sbjct: 576 YSVKSGYHAIIDWNSNSNTNNAASSNSSMEI--WKTLWKLKVPPKYSHLLWRILNNAI 631



 Score = 34.3 bits (77), Expect(3) = 7e-55
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 116 NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
           NL  KG   D +C  C    ESI H+F +C  A + W
Sbjct: 636 NLFKKGVKCDPLCPRCLNHMESIQHVFLECEWAKKVW 672


>ref|XP_023907624.1| uncharacterized protein LOC112019319 [Quercus suber]
          Length = 787

 Score =  185 bits (469), Expect(3) = 1e-54
 Identities = 96/269 (35%), Positives = 150/269 (55%), Gaps = 1/269 (0%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP L+G+SKK  F  + E  + +++  K   LSQAG+E+LIK+V   +P Y MS +++  
Sbjct: 303  LPSLVGRSKKNTFRALKERLDHKLSGWKEKLLSQAGKEVLIKAVAQAVPTYTMSVFKLPD 362

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +C  L S+   FWWG    G  K+ W+SW KMC  K++ GLGF+D + FN + L+K  W
Sbjct: 363  TLCDELTSMVRSFWWGQS-NGRTKMAWLSWEKMCAPKKEGGLGFRDLKSFNLALLSKQGW 421

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L     +L+ ++LKA+YFP    +H +     S+ W+S + A++++  G  ++VG+G S
Sbjct: 422  RLQTNTCSLVYRVLKARYFPNCDFLHAKLGRQPSFAWRSILAAQHIVQAGHRWQVGNGAS 481

Query: 540  IRVWDHPWV-RGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAILN 364
            IRVW   W+ R   F +     T    + V+ LLD     WK  LV+ +  P +A+ IL+
Sbjct: 482  IRVWQDRWIPRPPSFTTITQPNTLHMHSMVAALLDEVTGEWKADLVKRVFLPEEAQTILS 541

Query: 363  TPVCFPGQRDKISWLLTKSGVFLLTVPIK 277
             P       D+I W  T  G+F +    K
Sbjct: 542  IPRSNKHANDRIIWAYTPKGIFTVNSAYK 570



 Score = 41.6 bits (96), Expect(3) = 1e-54
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESS--GNKDLNVK--MWKGTWKLKIKGKIKHFIWRCFHN 134
           F+VNSAY+ A+         P +S  G  D   K   W+  W L I  KIK+F WR   N
Sbjct: 563 FTVNSAYKVALATS------PSASIVGQSDTTAKETFWRTLWSLNIPNKIKNFAWRACRN 616

Query: 133 IL 128
           IL
Sbjct: 617 IL 618



 Score = 37.7 bits (86), Expect(3) = 1e-54
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 125 TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
           T +NL ++G      C  CG  +E+  H+F++CT+A + W
Sbjct: 620 TKVNLRHRGVLESATCEACGVADETSGHLFWECTKAREVW 659


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  187 bits (476), Expect(3) = 2e-54
 Identities = 96/264 (36%), Positives = 153/264 (57%), Gaps = 3/264 (1%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP++ G+SKK++F  V E   K++   K   LS+AG+E LIKSV   +P Y+MSCY++  
Sbjct: 349  LPVIFGRSKKEIFASVQERIWKKIKGWKEKCLSRAGKETLIKSVAQAIPNYIMSCYKLPT 408

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
              C  + ++ +KFWWG+  E   KIHW+SW+K+   K + GLGF+ F  FN + L K  W
Sbjct: 409  GCCDNIEAMLAKFWWGTT-EKQRKIHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCW 467

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +L+  P++LL+K+ K++YFP+   +        S+ W+S   +R V+  G  + +G+GK 
Sbjct: 468  RLLQNPDSLLAKVFKSRYFPRSKFMDANVGYQPSYAWRSLCNSREVIDVGARWLIGNGKD 527

Query: 540  IRVWDHPWVRG---IKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAI 370
            + +W+  W+      K  SP S      +  VS+L++     W + LV+N  + F+AE I
Sbjct: 528  VHIWNDKWLPAQDKFKVWSPVSNLAPNAM--VSDLINLETKMWDKNLVQNCFNSFEAEQI 585

Query: 369  LNTPVCFPGQRDKISWLLTKSGVF 298
            LN P+ +    DK+ W   K+G F
Sbjct: 586  LNIPLSWRLPADKLIWHWEKNGEF 609



 Score = 42.7 bits (99), Expect(3) = 2e-54
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           FSV SAY    +  N  ++ PE+S ++D    +WK  WK+K+   IK+F+WR    IL
Sbjct: 609 FSVRSAYHMLSEIRN--QNSPEASSSRDH--LLWKAIWKVKVPNCIKNFLWRLAKAIL 662



 Score = 33.5 bits (75), Expect(3) = 2e-54
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 125 TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
           T   L  KG   DT C  C  D E  +H+F  C  + Q W
Sbjct: 664 TRSRLEKKGITLDTTCPLCFNDIECNEHLFMHCPLSKQVW 703


>gb|PNX71213.1| ribonuclease H [Trifolium pratense]
          Length = 951

 Score =  197 bits (502), Expect(3) = 4e-54
 Identities = 93/264 (35%), Positives = 159/264 (60%), Gaps = 3/264 (1%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            +P  +G+SK+++F+Y+ +   K++   K   LS AGR  L+K+V+  +P Y+MSC+ +  
Sbjct: 333  MPTDIGRSKQQIFNYIKDRVWKKLKGWKEKNLSYAGRGTLLKAVIQAIPTYIMSCFLLPK 392

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
             +CK + S+ S FWWGS  +   K+HW++W KMC  K Q G GF++  +FN++ LAK  W
Sbjct: 393  GLCKQIESMTSNFWWGSNTD-KKKLHWINWKKMCKNKTQGGYGFRNTCMFNEALLAKQGW 451

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            ++   P++L++K+ KAKYFPK   +  +  NM S+ W+S + AR++L +G  + +G+G+S
Sbjct: 452  RIATQPDSLVAKVYKAKYFPKCQFMEAKNGNMLSYTWRSILHARWILQKGCFWTIGNGES 511

Query: 540  IRVWDHPWV---RGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAI 370
            + +W   W+    G K  S     T   +  V +L++ +   W + L+  I  PF+A  I
Sbjct: 512  VNIWKDSWLPKQNGFKVWSTQQGYTRYNL--VKDLINPATNQWNQNLIHQIFLPFEANQI 569

Query: 369  LNTPVCFPGQRDKISWLLTKSGVF 298
            L  P+  P  +D++ W  TK G++
Sbjct: 570  LQLPLVEPNSKDELVWSGTKDGLY 593



 Score = 32.7 bits (73), Expect(3) = 4e-54
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 116 NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
           +L +KG   +  C  C    E+IDH+F QC  A   W
Sbjct: 653 SLSSKGIQCNPTCPRCNTSLETIDHVFMQCEWAKVVW 689



 Score = 32.0 bits (71), Expect(3) = 4e-54
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 301 FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
           ++V S Y  A++ ++L  +  + S N       W+  WKLKI  K    IWR  ++ L
Sbjct: 593 YTVKSGYHAAMEWNHLRHN--QVSSNAIATDLTWQNLWKLKIPPKHATLIWRILNHSL 648


>dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subterraneum]
          Length = 1957

 Score =  186 bits (472), Expect(3) = 7e-54
 Identities = 88/262 (33%), Positives = 151/262 (57%), Gaps = 3/262 (1%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP+L G+SKK++F +V +   +++   K   LS+AG+E LIK+V   +P Y+MSCY+I  
Sbjct: 1100 LPVLFGRSKKEIFSFVKDRVWRKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKIPI 1159

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
              C+ +  + +KFWWG+  E   K+HW+SW  +  +K   G+GF+ F  FN + L K  W
Sbjct: 1160 GCCRDIEGMLAKFWWGTD-ERQRKVHWLSWENLGKIKNSGGMGFRGFEEFNQALLGKQCW 1218

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +++    +L++K+ K++YFP+   +  +     S+ W+S   A+  +  GL + +G+G++
Sbjct: 1219 RIIQNQESLIAKVFKSRYFPRTNFMEAQIGYQPSYAWRSMFSAKKTIEMGLRWTIGNGQN 1278

Query: 540  IRVWDHPWV---RGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAI 370
            +R+W   W+    G K  SP ++  +    +VS+L+D     W   LVRNI S F+ + I
Sbjct: 1279 VRIWKDSWLPNQAGFKVCSPVNVLADD--AYVSQLIDPISRSWNMNLVRNIFSQFETQQI 1336

Query: 369  LNTPVCFPGQRDKISWLLTKSG 304
            LN P+ +    D+  W   + G
Sbjct: 1337 LNIPLSWRLPDDRRIWHWERDG 1358



 Score = 38.1 bits (87), Expect(3) = 7e-54
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 125  TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            T   L  KG   DTIC  C E  E+ +H+F +C  A Q W
Sbjct: 1415 TRCRLQRKGVILDTICPLCFEAEENSEHLFMKCRLAQQTW 1454



 Score = 37.4 bits (85), Expect(3) = 7e-54
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 310  IWGFSVNSAYQEAIQNHNLLE----DFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRC 143
            IW +  +  Y     +H + E      PE+S +    +  WK  WK+K    +K+F+WR 
Sbjct: 1351 IWHWERDGNYSVRSAHHMIKEAESASTPETSSSNSQQI--WKAIWKIKAPQSVKNFLWRL 1408

Query: 142  FHNIL 128
              +IL
Sbjct: 1409 ARDIL 1413


>gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1068

 Score =  192 bits (488), Expect(3) = 7e-54
 Identities = 102/262 (38%), Positives = 152/262 (58%), Gaps = 3/262 (1%)
 Frame = -2

Query: 1080 LPLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITG 901
            LP++ G+SKK+VF +V +   K+V   K   LS+AG+E LIK+V   +P Y+MSCY+I  
Sbjct: 720  LPVIFGRSKKEVFAFVQDRIWKKVKGWKEKCLSKAGKETLIKAVAQAIPSYIMSCYKIPE 779

Query: 900  NICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLW 721
              C  + S+ SKFWWGS  +  NKIHWMSW ++   K + GLGF+ F  FN + L K  W
Sbjct: 780  GSCANIESMLSKFWWGSS-DQKNKIHWMSWDRLGRAKNKGGLGFRGFSDFNKALLGKQCW 838

Query: 720  KLMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKS 541
            +LM   ++LLS++ K+KYFP+   +  +     S+ W+S   A+ V+  GL + +G+G+ 
Sbjct: 839  RLMSNEDSLLSRVFKSKYFPRSCFLKSKCGYQPSYAWRSLFNAKSVIDLGLRWTIGNGQQ 898

Query: 540  IRVWDHPW---VRGIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAI 370
            +++W  PW   +   K  SP     E  V  V+EL+D     WK  LV N  + F+A  I
Sbjct: 899  VKIWKDPWLPELSSFKVWSPVCNLDEDAV--VAELIDVDLKKWKRELVMNSFNEFEANQI 956

Query: 369  LNTPVCFPGQRDKISWLLTKSG 304
            LN P+ +    DK  W   ++G
Sbjct: 957  LNIPLSWRLPDDKKVWSWERNG 978



 Score = 40.0 bits (92), Expect(3) = 7e-54
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -1

Query: 301  FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNIL 128
            +SV SAY   +     L D PE S     N  +WK  WK++   ++K+F+WR    IL
Sbjct: 980  YSVRSAYH--LLKEETLRDIPEPSTAG--NTGIWKSIWKVQAPQRVKNFLWRVVKRIL 1033



 Score = 29.3 bits (64), Expect(3) = 7e-54
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 125  TNLNLCNKGCDRDTICNFCGEDNESIDHIFFQC 27
            T   L  KG   D IC  C +  E+ +H+F  C
Sbjct: 1035 TRCRLEQKGVALDPICPLCHDGEETQEHLFMHC 1067


>gb|PNY07715.1| ribonuclease H [Trifolium pratense]
          Length = 1567

 Score =  191 bits (485), Expect(3) = 1e-53
 Identities = 96/261 (36%), Positives = 149/261 (57%), Gaps = 3/261 (1%)
 Frame = -2

Query: 1077 PLLLGKSKKKVFDYVIEATEKRVNN*KHNFLSQAGREILIKSVLSELPIYLMSCYRITGN 898
            P ++G+SKK+ F ++ +   K++   K   LS AGR  LIK+V   +P YLMS + +   
Sbjct: 935  PTVIGRSKKQAFSFIQDKVWKKLKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSSFLLPKG 994

Query: 897  ICKTLASICSKFWWGSPLEGPNKIHWMSWSKMCVLKQQVGLGFKDFRIFNDSRLAKNLWK 718
            +C  L  + SKFWWGS ++   KIHW++W K C  K Q G+GF+D R FN++ LAK  W+
Sbjct: 995  LCNLLEQMSSKFWWGSNVD-QRKIHWVNWRKTCKQKNQGGMGFRDIRAFNEALLAKQGWR 1053

Query: 717  LMVCPNTLLSKLLKAKYFPKGGLIHVRQKNMDSWLWKSWIKARYVLLQGLIFKVGDGKSI 538
            ++  PN+L++K+LKAKYFP G  +   Q    S+ W+S  KA ++L +G  + V +G++I
Sbjct: 1054 ILTEPNSLVAKILKAKYFPHGNFLQATQGKKSSYSWQSIQKASWILKKGCFWLVENGQNI 1113

Query: 537  RVWDHPWVR---GIKFMSPASLETEREVTWVSELLDSSGLGWKEPLVRNIISPFQAEAIL 367
             +W+  W+         +P  + T  E   V +L++ +   W EP++     P +A  IL
Sbjct: 1114 NIWEDRWINPQGNSTTWTPKPINTNLEK--VKDLINPTTHTWNEPVISKTFFPIEANQIL 1171

Query: 366  NTPVCFPGQRDKISWLLTKSG 304
              P+      D ISW  TK G
Sbjct: 1172 QIPLSNTMTEDIISWQGTKDG 1192



 Score = 35.0 bits (79), Expect(3) = 1e-53
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -1

Query: 301  FSVNSAYQEAIQNHNLLEDFPESSGNKDLNVKMWKGTWKLKIKGKIKHFIWRCFHNILLL 122
            ++V S Y   ++  N+ E     + N   +   W   W +K+  K  H +WR  HN + +
Sbjct: 1194 YTVKSGYNAQMEWANV-ESSQAQTSNNHKDEPFWNKIWNIKVPPKQIHLLWRIMHNAIPV 1252

Query: 121  ILTCVIKDVI 92
                + K ++
Sbjct: 1253 KTNLIKKGIL 1262



 Score = 34.7 bits (78), Expect(3) = 1e-53
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 116  NLCNKGCDRDTICNFCGEDNESIDHIFFQCTRAVQCW 6
            NL  KG   D++C  C +  E+IDH+F  C  A   W
Sbjct: 1255 NLIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVW 1291