BLASTX nr result

ID: Rehmannia29_contig00002392 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00002392
         (531 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEF51216.1| conserved hypothetical protein [Ricinus communis]       57   2e-06

>gb|EEF51216.1| conserved hypothetical protein [Ricinus communis]
          Length = 358

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
 Frame = -3

Query: 529 ERLAFFKDCFDKREDFNLIDKKIYERAVASMGNNSGWAQKFFNDNVGRYGPLKECFIHGH 350
           ER++FF DC++++       +  Y+RA   +G N  W  +  + ++   GPL +C+   +
Sbjct: 225 ERVSFFTDCWERQHSLPKNQQGCYKRATRGLGRNQNWTGRISDTSL---GPLYDCY--DY 279

Query: 349 HQNSQQNSYMYKGDIERENLGLLRFFWNSAAHLRSHIRACIDDWDEINDECVELSIMAVF 170
           H  +        G+ ER N  L++ + +   HLR   +         ND  +++ +M VF
Sbjct: 280 HTRTNGGFDDRSGNKERINRELIKCWRHLGTHLREKGKTY---GYAFNDRDIDVMVMHVF 336

Query: 169 ERQLLKFQQELY-NVGLLDHF 110
             ++ +FQ+ L+ N G+L  F
Sbjct: 337 ADKIAQFQKLLWTNDGILTEF 357


Top