BLASTX nr result
ID: Rehmannia29_contig00002238
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00002238
(581 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max] >gi|73440260... 105 5e-55
gb|AFK49064.1| unknown [Lotus japonicus] 113 1e-42
ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus flo... 142 5e-41
gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa] 116 7e-41
ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis ... 130 3e-36
gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas ... 130 2e-35
ref|YP_009145083.1| ribosomal protein S12 (chloroplast) [Podococ... 114 2e-29
ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus tr... 104 5e-26
gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodiu... 104 8e-26
gb|EFH70943.1| hypothetical protein ARALYDRAFT_892903 [Arabidops... 82 3e-17
gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max] 80 2e-16
ref|YP_009002279.1| ribosomal protein S12 (chloroplast) [Pinguic... 81 7e-16
ref|XP_017225397.1| PREDICTED: CASP-like protein 1D1 [Daucus car... 82 9e-16
gb|AFS35523.1| ribosomal protein S12, partial (plastid) [Fragari... 77 2e-15
gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var... 79 3e-15
gb|EEF42577.1| conserved hypothetical protein [Ricinus communis] 63 3e-15
gb|KVG87221.1| hypothetical protein Ccrd_026132, partial [Cynara... 75 3e-14
gb|OAY32019.1| hypothetical protein MANES_14G160100, partial [Ma... 70 9e-13
ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitun... 70 1e-12
ref|YP_001152253.1| ORF40x [Pinus koraiensis] >gi|145048878|gb|A... 69 2e-12
>emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max]
gb|KHN32086.1| Putative 8.8 kDa protein in rps12-tRNA-Val intergenic region
[Glycine soja]
Length = 143
Score = 105 bits (263), Expect(3) = 5e-55
Identities = 52/56 (92%), Positives = 54/56 (96%)
Frame = -3
Query: 168 TDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 1
TDTQF+VSKQNSILD+IDTYRIL KAVFDESRMYGLEGDLSYLSRSTLQYG KKPK
Sbjct: 88 TDTQFQVSKQNSILDIIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGAKKPK 143
Score = 101 bits (252), Expect(3) = 5e-55
Identities = 53/62 (85%), Positives = 54/62 (87%)
Frame = -2
Query: 433 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 254
MRQKIFFLK+FDSEL YVQG I K FQRFSLTLSVSTNNSK LDFFR GPSQIAMIRST
Sbjct: 1 MRQKIFFLKKFDSELRYVQGPIWKEFQRFSLTLSVSTNNSKCLDFFRIGPSQIAMIRSTL 60
Query: 253 FY 248
Y
Sbjct: 61 HY 62
Score = 56.2 bits (134), Expect(3) = 5e-55
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = -1
Query: 251 LHNFGNPRTQSYGYVKYRISNPSRKGG 171
LH FGNPRTQSYGYVKYRISNPSRK G
Sbjct: 60 LHYFGNPRTQSYGYVKYRISNPSRKRG 86
>gb|AFK49064.1| unknown [Lotus japonicus]
Length = 128
Score = 113 bits (283), Expect(2) = 1e-42
Identities = 56/58 (96%), Positives = 57/58 (98%)
Frame = -3
Query: 174 RETDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 1
RETDTQF+VSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYG KKPK
Sbjct: 71 RETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGAKKPK 128
Score = 87.8 bits (216), Expect(2) = 1e-42
Identities = 48/71 (67%), Positives = 52/71 (73%)
Frame = -1
Query: 389 LICPRFNIEIISEVFPDFVRVNKQFEIPRLF*NRSESNSNDSKHFFLHNFGNPRTQSYGY 210
+ICPR NIE ISEVF DFVRVNKQFE+PRLF R + LH F N RTQSYGY
Sbjct: 1 MICPRSNIERISEVFLDFVRVNKQFEMPRLF--RLGPSQIAMIRSTLHYFENLRTQSYGY 58
Query: 209 VKYRISNPSRK 177
VKYRISNPS+K
Sbjct: 59 VKYRISNPSKK 69
>ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus floridus var. glaucus]
ref|NP_862814.1| hypothetical protein CafeCp092 [Calycanthus floridus var. glaucus]
sp|Q7Y618.1|YCX1_CALFG RecName: Full=Uncharacterized 8.8 kDa protein in rps12-tRNA-Val
intergenic region (chloroplast) [Calycanthus floridus
var. glaucus]
emb|CAD28768.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
emb|CAD28782.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
Length = 75
Score = 142 bits (359), Expect = 5e-41
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = -2
Query: 433 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 254
MRQKIFFLKRFDSELLYVQGSILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIA IRSTS
Sbjct: 1 MRQKIFFLKRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIATIRSTS 60
Query: 253 FYTISETQGLNRMDM 209
FYTISETQGLNRMDM
Sbjct: 61 FYTISETQGLNRMDM 75
>gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa]
Length = 124
Score = 116 bits (291), Expect(2) = 7e-41
Identities = 58/58 (100%), Positives = 58/58 (100%)
Frame = -3
Query: 174 RETDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 1
RETDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 67 RETDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 124
Score = 79.0 bits (193), Expect(2) = 7e-41
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -1
Query: 290 RSESNSNDSKHFFLHNFGNPRTQSYGYVKYRISNPSRK 177
RSESNSND KHFFLH FGNPRTQSYGYVKYRISNPSRK
Sbjct: 28 RSESNSNDLKHFFLHYFGNPRTQSYGYVKYRISNPSRK 65
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/46 (69%), Positives = 33/46 (71%)
Frame = -2
Query: 433 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFF 296
MRQKIFFLKRFDSELLYVQGSILK FQR S +NS L F
Sbjct: 1 MRQKIFFLKRFDSELLYVQGSILKKFQR-------SESNSNDLKHF 39
>ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis aphrodite subsp.
formosana]
gb|AAW82567.1| hypothetical protein (chloroplast) [Phalaenopsis aphrodite subsp.
formosana]
Length = 77
Score = 130 bits (327), Expect = 3e-36
Identities = 67/75 (89%), Positives = 67/75 (89%)
Frame = +3
Query: 252 KEVLRIIAI*LGPVLKKSRYFELFVDTDKVRENL*NYFNIEPWTYKSSESNLFRKKIFCL 431
KEVLRIIAI LGPVLKKSRYFELFVDTDK RENL NY NI PWTY SSESNLFRKK FCL
Sbjct: 3 KEVLRIIAIGLGPVLKKSRYFELFVDTDKGRENLLNYSNIGPWTYSSSESNLFRKKSFCL 62
Query: 432 MVACSSPLTKLSLLG 476
MVACSSPL KLSLLG
Sbjct: 63 MVACSSPLPKLSLLG 77
>gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas comosus]
Length = 182
Score = 130 bits (328), Expect(2) = 2e-35
Identities = 76/111 (68%), Positives = 76/111 (68%)
Frame = -2
Query: 580 DRQQGRSSAL*ILIQDLYHLMMPCESLETCEVYG*PNNESFVRGLEQATMRQKIFFLKRF 401
DRQQGRSSAL GLEQATMRQKIFFLKRF
Sbjct: 83 DRQQGRSSAL---------------------------------GLEQATMRQKIFFLKRF 109
Query: 400 DSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 248
DSELLYVQG ILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY
Sbjct: 110 DSELLYVQGPILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 160
Score = 46.2 bits (108), Expect(2) = 2e-35
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -3
Query: 249 TQFRKPKDSIVWICKIQDFQS 187
T FRKPKDSIVWICKIQDFQS
Sbjct: 162 TLFRKPKDSIVWICKIQDFQS 182
>ref|YP_009145083.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
ref|YP_009145127.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
gb|AKJ85882.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
gb|AKJ85883.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
Length = 121
Score = 114 bits (286), Expect = 2e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 240 RKPKDSIVWICKIQDFQS*QEGRETDTQFKVSKQNSILDLIDTYRILRKAVFDESRMYGL 61
+KP + K + ++ RETDTQFKVSKQNSILDLIDTYRIL KAVFDESRMYGL
Sbjct: 42 KKPNSASYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGL 101
Query: 60 EGDLSYLSRSTLQYGVKKPK 1
EGDLSYLSRSTLQYGVKKPK
Sbjct: 102 EGDLSYLSRSTLQYGVKKPK 121
>ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus trichocarpa]
ref|YP_001109569.1| hypothetical protein Poptr_cp092 [Populus trichocarpa]
gb|ABO36754.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
gb|ABO36773.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
Length = 65
Score = 104 bits (259), Expect = 5e-26
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = -2
Query: 343 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM*NTGFPILAGREG 170
+TLSVSTNNSK LDFFR GPSQIAMIRSTSFYTISETQGLNRMDM NTGFPILAG+ G
Sbjct: 1 MTLSVSTNNSKCLDFFRAGPSQIAMIRSTSFYTISETQGLNRMDMENTGFPILAGKGG 58
>gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodium distachyon]
Length = 84
Score = 104 bits (259), Expect = 8e-26
Identities = 62/90 (68%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Frame = -2
Query: 433 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 254
MRQKI FLKRFDSELLY RFSLTLSVSTNNSKYLDFFRTGPS +AMIRSTS
Sbjct: 1 MRQKILFLKRFDSELLY----------RFSLTLSVSTNNSKYLDFFRTGPS-LAMIRSTS 49
Query: 253 F--YTISETQGLNRMDM*NTGFPILAGREG 170
F I +++ +RMDM NTGF ILAG+ G
Sbjct: 50 FSITLIRKSKDSDRMDMENTGFSILAGKGG 79
>gb|EFH70943.1| hypothetical protein ARALYDRAFT_892903 [Arabidopsis lyrata subsp.
lyrata]
Length = 60
Score = 81.6 bits (200), Expect = 3e-17
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = -2
Query: 343 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM 209
+TLSVSTNNSK LDFFRT PSQIAMIRST FYTISETQGLNRMDM
Sbjct: 16 VTLSVSTNNSKCLDFFRTDPSQIAMIRSTYFYTISETQGLNRMDM 60
>gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max]
Length = 87
Score = 80.1 bits (196), Expect = 2e-16
Identities = 42/51 (82%), Positives = 43/51 (84%)
Frame = -2
Query: 433 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPS 281
MRQKIFFLK+FDSEL YVQG I K FQRFS TLSVSTNNSK LDFFR G S
Sbjct: 1 MRQKIFFLKKFDSELRYVQGPIWKEFQRFSWTLSVSTNNSKCLDFFRIGLS 51
>ref|YP_009002279.1| ribosomal protein S12 (chloroplast) [Pinguicula ehlersiae]
emb|CDL78835.1| ribosomal protein S12 (chloroplast) [Pinguicula ehlersiae]
Length = 156
Score = 80.9 bits (198), Expect = 7e-16
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = -3
Query: 123 LIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 1
+IDTYRILRKAVFDESRMYGL GDLSYLSRSTLQYGVKKPK
Sbjct: 116 IIDTYRILRKAVFDESRMYGLGGDLSYLSRSTLQYGVKKPK 156
>ref|XP_017225397.1| PREDICTED: CASP-like protein 1D1 [Daucus carota subsp. sativus]
Length = 232
Score = 82.4 bits (202), Expect = 9e-16
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 67 VHTTFIEYGFPQNSICIYEIEYGILFTHFKLSIRFPPFLLGLE 195
VHTTFIEYGF QNSICIYEIEYGILFTHFKLSIRFPPF +E
Sbjct: 172 VHTTFIEYGFVQNSICIYEIEYGILFTHFKLSIRFPPFPARIE 214
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/86 (47%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Frame = +3
Query: 24 VGWISKDMKDLPPSRTYDFHRIRLSAEFYMYL*DRVWNSVYSL*IEYP-----------F 170
+ WISKDMKDLPPS + F Y V NS+ IEY F
Sbjct: 157 IWWISKDMKDLPPSTVH--------TTFIEY--GFVQNSICIYEIEYGILFTHFKLSIRF 206
Query: 171 PSLPARIGNPVFYISIRLSPWVSEIV 248
P PARI NPVFYISIR SP VS+IV
Sbjct: 207 PPFPARIENPVFYISIRFSPCVSQIV 232
>gb|AFS35523.1| ribosomal protein S12, partial (plastid) [Fragaria moschata]
Length = 40
Score = 76.6 bits (187), Expect = 2e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 120 IDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 1
IDTY IL KAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 1 IDTYIILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 40
>gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var. scolymus]
Length = 157
Score = 79.3 bits (194), Expect = 3e-15
Identities = 42/75 (56%), Positives = 48/75 (64%)
Frame = -1
Query: 452 GTGAGYHETKDLLSKEIRFGTLICPRFNIEIISEVFPDFVRVNKQFEIPRLF*NRSESNS 273
G GAGYHETKD LSKEI+F T+ICPRFNIE SEVFPDFV N+SESN+
Sbjct: 81 GGGAGYHETKDFLSKEIQFRTIICPRFNIEKNSEVFPDFVH------------NKSESNN 128
Query: 272 NDSKHFFLHNFGNPR 228
ND + F P+
Sbjct: 129 NDFEALLFMLFRKPK 143
>gb|EEF42577.1| conserved hypothetical protein [Ricinus communis]
Length = 286
Score = 63.2 bits (152), Expect(2) = 3e-15
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +1
Query: 85 EYGFPQNSICIYEIEYGILFTHFKLSIRFPPF 180
EYGF QNSICIYEIEYGILFTHFKLSI PPF
Sbjct: 232 EYGFLQNSICIYEIEYGILFTHFKLSICSPPF 263
Score = 46.2 bits (108), Expect(2) = 3e-15
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 171 PSLPARIGNPVFYISIRLSPWVSEIV 248
P PARIGNPVFYISIRLSP VS+IV
Sbjct: 261 PPFPARIGNPVFYISIRLSPRVSKIV 286
>gb|KVG87221.1| hypothetical protein Ccrd_026132, partial [Cynara cardunculus var.
scolymus]
Length = 113
Score = 75.5 bits (184), Expect = 3e-14
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +3
Query: 360 YFNIEPWTYKSSESNLFRKKIFCLMVACSSPLTKLS 467
+FNIEPWTY SSESNLFRKKIFCLMVACSSPLTKLS
Sbjct: 32 FFNIEPWTYNSSESNLFRKKIFCLMVACSSPLTKLS 67
>gb|OAY32019.1| hypothetical protein MANES_14G160100, partial [Manihot esculenta]
Length = 48
Score = 69.7 bits (169), Expect = 9e-13
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -2
Query: 352 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM 209
RF LSVS NNSK L+FFRT PSQIA+IR++SFYTIS+ Q LNRMDM
Sbjct: 1 RFFFILSVSINNSKCLNFFRTSPSQIAIIRNSSFYTISKIQELNRMDM 48
>ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitungensis]
ref|YP_001312284.1| hypothetical protein CYtaCp120 [Cycas taitungensis]
dbj|BAF64995.1| hypothetical protein (chloroplast) [Cycas taitungensis]
dbj|BAF65026.1| hypothetical protein (chloroplast) [Cycas taitungensis]
Length = 64
Score = 69.7 bits (169), Expect = 1e-12
Identities = 35/46 (76%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Frame = +2
Query: 179 SC*DWKSCILHIHTIESLGFRNCVKR-SASNHCYLTRTCSKKVEVF 313
SC DWKS ILHI TI+SLG + VK+ S SNHCYLTRTCSKKVEVF
Sbjct: 19 SCYDWKSRILHICTIKSLGSQKSVKKKSVSNHCYLTRTCSKKVEVF 64
>ref|YP_001152253.1| ORF40x [Pinus koraiensis]
gb|ABP35493.1| ORF40x (chloroplast) [Pinus koraiensis]
Length = 40
Score = 68.9 bits (167), Expect = 2e-12
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -1
Query: 116 IHIEFCGKPYSMKVVCTAWREIFHIFRDPPYNMG*KSQ 3
+ IE CGKPYS KVVCT WREIFH FRDPPYNM KSQ
Sbjct: 1 MQIESCGKPYSTKVVCTVWREIFHTFRDPPYNMESKSQ 38