BLASTX nr result

ID: Rehmannia29_contig00001791 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00001791
         (505 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PIM99621.1| DNA helicase [Handroanthus impetiginosus]              171   3e-46
ref|XP_012839963.1| PREDICTED: ATP-dependent DNA helicase SRS2-l...   121   8e-29
ref|XP_022867584.1| ATP-dependent DNA helicase SRS2-like protein...    83   2e-15
ref|XP_022867525.1| ATP-dependent DNA helicase SRS2-like protein...    83   2e-15
ref|XP_022867464.1| ATP-dependent DNA helicase SRS2-like protein...    83   2e-15

>gb|PIM99621.1| DNA helicase [Handroanthus impetiginosus]
          Length = 1182

 Score =  171 bits (434), Expect = 3e-46
 Identities = 99/155 (63%), Positives = 113/155 (72%), Gaps = 3/155 (1%)
 Frame = -2

Query: 456 MSNKENAVVMPTGGELSAEQRARISQSFXXXXXXXXXXXXRFESETASNHALSNRK---S 286
           M+ KEN VVMPTGGELSAEQRARISQSF            R ES  AS++ LSN+K   S
Sbjct: 1   MNKKENVVVMPTGGELSAEQRARISQSFRAAKALLARKRPRLESGIASDNLLSNQKGCRS 60

Query: 285 GDEKETNGIKRLPLSEISTNISTPVSLKDCKFSKTNGDDAKNGVKNEILVTPVRQSGCSS 106
           GDE     IKRLPLSE+ TNIS+PVSLK CK S+ N DDAKNGV+NEIL+TPVRQ+   S
Sbjct: 61  GDE-----IKRLPLSEVCTNISSPVSLKGCKLSRQNSDDAKNGVENEILITPVRQAESCS 115

Query: 105 ISCLGDASSYENKLITEGFGMEKVGLSLENRSILN 1
             CLGDASS EN+L  EGFG++KV LSLE+ SI N
Sbjct: 116 RPCLGDASSCENELKDEGFGVQKVCLSLEDGSISN 150


>ref|XP_012839963.1| PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120
           [Erythranthe guttata]
 gb|EYU35164.1| hypothetical protein MIMGU_mgv1a000422mg [Erythranthe guttata]
          Length = 1162

 Score =  121 bits (304), Expect = 8e-29
 Identities = 79/156 (50%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
 Frame = -2

Query: 456 MSNKENAVVMPTGGELSAEQRARISQSFXXXXXXXXXXXXRFESETASNHALSNRKSGDE 277
           MSNKENAVV P GGELSAEQ+ARISQSF                      A    +SG+E
Sbjct: 1   MSNKENAVVTPAGGELSAEQKARISQSFRAAKALL---------------ARKRPRSGNE 45

Query: 276 KE------TNGIKRLPLSEISTNISTPVSLKDCKFSKTNGDDAKNGVKNEILVTPVRQSG 115
            E       +GIKRLPLS I TN  + V+LKD K S  N DD KNGVK+EIL TPV+Q  
Sbjct: 46  NEIDSLNRVDGIKRLPLSHICTNTPSIVNLKDRKLSGRNCDDVKNGVKSEILTTPVKQGE 105

Query: 114 CSSISCLGDASSYENKLITEGFGMEKVGLSLENRSI 7
            S+   LGD  S  N+L  EG G+E+VGLS ++ SI
Sbjct: 106 FSNTRYLGDTRS--NELNCEGLGVEEVGLSSKDGSI 139


>ref|XP_022867584.1| ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X3
           [Olea europaea var. sylvestris]
          Length = 967

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
 Frame = -2

Query: 450 NKENAVVMPTGGELSAEQRARISQSFXXXXXXXXXXXXRFESETASNHALSNRKSGD--- 280
           NKEN V  P GGELSAEQRARISQ F            R  S + S+    N+K+ D   
Sbjct: 2   NKENVVASPGGGELSAEQRARISQKFRAAKALLHSKRPRLWSTSPSDLFPKNQKANDTDG 61

Query: 279 ---EKETNGIKRLPLSEISTNISTPVSLKDCKFSKTN---GDDAKNGVKNEI----LVTP 130
              +   NGIKR+PL+EI  N  +P+ +   K    +    DD  +  K+E+    L +P
Sbjct: 62  IRNQAHINGIKRVPLNEIPKNTPSPIPMNGYKLVNKHCEINDDMNSKTKSEVLQLSLESP 121

Query: 129 VRQSGCSSISCLGDASSYENKLITEGFGMEKVGLSLEN 16
             Q+ CSS SCL + SS    L   G G  K+ + LE+
Sbjct: 122 SSQAKCSSGSCLDEISSCGIDLNGVGSGEMKLDVPLES 159


>ref|XP_022867525.1| ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2
           [Olea europaea var. sylvestris]
          Length = 1200

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
 Frame = -2

Query: 450 NKENAVVMPTGGELSAEQRARISQSFXXXXXXXXXXXXRFESETASNHALSNRKSGD--- 280
           NKEN V  P GGELSAEQRARISQ F            R  S + S+    N+K+ D   
Sbjct: 2   NKENVVASPGGGELSAEQRARISQKFRAAKALLHSKRPRLWSTSPSDLFPKNQKANDTDG 61

Query: 279 ---EKETNGIKRLPLSEISTNISTPVSLKDCKFSKTN---GDDAKNGVKNEI----LVTP 130
              +   NGIKR+PL+EI  N  +P+ +   K    +    DD  +  K+E+    L +P
Sbjct: 62  IRNQAHINGIKRVPLNEIPKNTPSPIPMNGYKLVNKHCEINDDMNSKTKSEVLQLSLESP 121

Query: 129 VRQSGCSSISCLGDASSYENKLITEGFGMEKVGLSLEN 16
             Q+ CSS SCL + SS    L   G G  K+ + LE+
Sbjct: 122 SSQAKCSSGSCLDEISSCGIDLNGVGSGEMKLDVPLES 159


>ref|XP_022867464.1| ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1
           [Olea europaea var. sylvestris]
          Length = 1207

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
 Frame = -2

Query: 450 NKENAVVMPTGGELSAEQRARISQSFXXXXXXXXXXXXRFESETASNHALSNRKSGD--- 280
           NKEN V  P GGELSAEQRARISQ F            R  S + S+    N+K+ D   
Sbjct: 2   NKENVVASPGGGELSAEQRARISQKFRAAKALLHSKRPRLWSTSPSDLFPKNQKANDTDG 61

Query: 279 ---EKETNGIKRLPLSEISTNISTPVSLKDCKFSKTN---GDDAKNGVKNEI----LVTP 130
              +   NGIKR+PL+EI  N  +P+ +   K    +    DD  +  K+E+    L +P
Sbjct: 62  IRNQAHINGIKRVPLNEIPKNTPSPIPMNGYKLVNKHCEINDDMNSKTKSEVLQLSLESP 121

Query: 129 VRQSGCSSISCLGDASSYENKLITEGFGMEKVGLSLEN 16
             Q+ CSS SCL + SS    L   G G  K+ + LE+
Sbjct: 122 SSQAKCSSGSCLDEISSCGIDLNGVGSGEMKLDVPLES 159


Top