BLASTX nr result

ID: Rehmannia28_contig00053430 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00053430
         (381 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KMZ11300.1| hypothetical protein BHUM_04587c [Candidatus Burk...    62   2e-09
gb|KND56555.1| hypothetical protein BVER_03567 [Candidatus Burkh...    54   6e-06

>gb|KMZ11300.1| hypothetical protein BHUM_04587c [Candidatus Burkholderia humilis]
          Length = 238

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
 Frame = +3

Query: 3   VELDSYTAAVRAAARVESGISRLG--------LQKRAASNLKPPSFDRSACTQKFQRVSY 158
           V +D+Y   V  A RVE   +RL           KR   +    S +++   +K  R   
Sbjct: 119 VRMDTYADLVDYALRVEDSKARLKEFRDSKKLRSKRKMMSKVNSSENQTGTFRKKSRKDL 178

Query: 159 GSTSG----SKHQIRPKIQGKPCLHCNKTGHDPSQCWRKLGRYLKCGSAQHQIKNC 314
           G  +     S+H  R + QG+ C +C K GH  S+CWRK+G+ L CGS +HQ + C
Sbjct: 179 GKQNSEEKTSRHGKRGQFQGQ-CHYCGKNGHKESKCWRKVGKCLLCGSLEHQARQC 233


>gb|KND56555.1| hypothetical protein BVER_03567 [Candidatus Burkholderia
           verschuerenii]
          Length = 350

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 213 CLHCNKTGHDPSQCWRKLGRYLKCGSAQHQIKNCPMMA--QTSDKQKP 350
           C +CNK GH  + CWRK  + L+CGSA H+I  CP +   Q S   KP
Sbjct: 41  CRYCNKPGHVEADCWRKSNKCLRCGSADHRILKCPFVTLDQASAGTKP 88


Top