BLASTX nr result

ID: Rehmannia28_contig00049707 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00049707
         (533 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]    35   2e-06
ref|XP_010656394.1| PREDICTED: uncharacterized protein LOC104880...    35   4e-06

>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score = 35.0 bits (79), Expect(3) = 2e-06
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 363 NPSFLTWNRQDQXXXXXXXXXXXXXXXXXTVGLSTSKEIWECLQTTFSSKNQAKVM 530
           NP F  + RQD                   VG S++ E+W  +   F+S++ AKVM
Sbjct: 296 NPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVM 351



 Score = 34.3 bits (77), Expect(3) = 2e-06
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 169 TTTAAMVEPIIQPQRQLVTVKLTENNYLVWK 261
           TTT   +  +I P  QL+T++L ++N+L+WK
Sbjct: 229 TTTDESLRMVISPLSQLITMRLEDDNFLMWK 259



 Score = 28.5 bits (62), Expect(3) = 2e-06
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 266 AIRGYGLEGYLTGT 307
           A+RGYGLEG+L GT
Sbjct: 265 AVRGYGLEGFLFGT 278


>ref|XP_010656394.1| PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera]
          Length = 415

 Score = 35.0 bits (79), Expect(3) = 4e-06
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 363 NPSFLTWNRQDQXXXXXXXXXXXXXXXXXTVGLSTSKEIWECLQTTFSSKNQAKVM 530
           NP F  + RQD                   VG S++ E+W  +   F+S++ AKVM
Sbjct: 93  NPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVM 148



 Score = 34.7 bits (78), Expect(3) = 4e-06
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 169 TTTAAMVEPIIQPQRQLVTVKLTENNYLVWKQSYSRI 279
           TTT   +  +I P  QL+T++L ++N+L+WK     +
Sbjct: 26  TTTDESLRMVISPLSQLITMRLEDDNFLMWKYQIENV 62



 Score = 26.9 bits (58), Expect(3) = 4e-06
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 269 IRGYGLEGYLTGT 307
           +RGYGLEG+L GT
Sbjct: 63  VRGYGLEGFLFGT 75


Top