BLASTX nr result

ID: Rehmannia28_contig00048540 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00048540
         (565 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011085156.1| PREDICTED: transcription initiation factor T...    55   8e-06

>ref|XP_011085156.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Sesamum
           indicum] gi|747076195|ref|XP_011085157.1| PREDICTED:
           transcription initiation factor TFIID subunit 8 [Sesamum
           indicum]
          Length = 262

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
 Frame = -3

Query: 554 KEKEDENWRFCDERKRVERVVSNKEIEISGKRGKVRFKMGVAIHNPTM-VGNLR----GA 390
           +E+E+E W     R+ VER  +N+  ++SGKRGKVRF+MGV + N  + V NLR     A
Sbjct: 197 EEREEEKWDC--RRETVERECNNENFQVSGKRGKVRFRMGVGLDNKVVRVRNLRVKGVTA 254

Query: 389 GTGKRV 372
           G GKRV
Sbjct: 255 GIGKRV 260


Top