BLASTX nr result

ID: Rehmannia28_contig00041540 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00041540
         (327 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012832294.1| PREDICTED: high mobility group B protein 6 [...    77   3e-15
emb|CDP09513.1| unnamed protein product [Coffea canephora]             65   9e-11
ref|XP_011095150.1| PREDICTED: high mobility group B protein 6 [...    58   2e-08

>ref|XP_012832294.1| PREDICTED: high mobility group B protein 6 [Erythranthe guttata]
           gi|604343009|gb|EYU42033.1| hypothetical protein
           MIMGU_mgv1a014076mg [Erythranthe guttata]
          Length = 201

 Score = 76.6 bits (187), Expect = 3e-15
 Identities = 51/97 (52%), Positives = 62/97 (63%), Gaps = 18/97 (18%)
 Frame = +2

Query: 89  MLAAQSSLSGHQLVQAP--KSNRRPLQPKNL-------SSITTTIIKPKPQNPAEYLHNS 241
           MLAAQS LSGH+L++AP   S+RRPLQPKN+       ++ TT+ +KPKP +P    H S
Sbjct: 1   MLAAQSQLSGHELIRAPPKSSSRRPLQPKNINQSETKAATTTTSNLKPKPHHPPH--HIS 58

Query: 242 NKENVPPI-------CVKKESFP--IEAFDGSLADEL 325
           NKENVP I        VKK+S P     FD SLADEL
Sbjct: 59  NKENVPHIYTTTTTTLVKKQSPPPIQPPFDASLADEL 95


>emb|CDP09513.1| unnamed protein product [Coffea canephora]
          Length = 206

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 13/90 (14%)
 Frame = +2

Query: 95  AAQSSLSGHQLVQAPKSNRRPLQPKNLSSITTTIIKP--KPQNPA-------EYLHN-SN 244
           AAQS LS HQ +Q PKS R+PLQPKN S  T  +I P  KP+  A         L N SN
Sbjct: 4   AAQSPLSDHQ-IQRPKSGRKPLQPKN-SPATPVVITPHQKPKQNAATDRIEVSVLDNDSN 61

Query: 245 KENVPPIC---VKKESFPIEAFDGSLADEL 325
           KENV P+    VK E F IE FD SLA+EL
Sbjct: 62  KENVNPLFATPVKNEEFRIEQFDSSLAEEL 91


>ref|XP_011095150.1| PREDICTED: high mobility group B protein 6 [Sesamum indicum]
          Length = 167

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 40/76 (52%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
 Frame = +2

Query: 131 QAPKSNRRPLQPKNLSSITTTIIKP--KPQNPAEYLHN--SNKENVPPIC------VKKE 280
           Q+P S RRPLQPKNLS+      KP  KP + A  L N   NKENV P        VKKE
Sbjct: 5   QSPHSGRRPLQPKNLSTAPIITAKPNTKPADRARQLDNYYCNKENVAPTYNYSSTPVKKE 64

Query: 281 -SFPIEAFDGSLADEL 325
              PIE+ D SLADEL
Sbjct: 65  YKIPIESLDASLADEL 80


Top