BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00040460
         (377 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012453252.1| PREDICTED: uncharacterized protein LOC105775...    45   6e-07
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    46   4e-06
ref|XP_009140684.1| PREDICTED: uncharacterized protein LOC103864...    50   7e-06
ref|XP_012467037.1| PREDICTED: uncharacterized protein LOC105785...    41   9e-06

>ref|XP_012453252.1| PREDICTED: uncharacterized protein LOC105775269 [Gossypium
           raimondii]
          Length = 487

 Score = 45.4 bits (106), Expect(2) = 6e-07
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +3

Query: 15  QGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFR-----GKGRRFSYNNRARCQI*NYSNH 179
           Q  V  +    G  + QF N   RS+ R G  R     G+GRRF++  + +CQ+     H
Sbjct: 219 QSNVAQHTESGGSRVKQFDNN-SRSSSRGGGSREFRGRGRGRRFTHT-KPQCQLCGRIGH 276

Query: 180 KAEKCYYRFDMNFAPASKQ 236
              KCYY+FD  F   S+Q
Sbjct: 277 TVPKCYYQFDETFGGVSQQ 295



 Score = 34.7 bits (78), Expect(2) = 6e-07
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 277 RVNVASFGSQVTENSQEIYWYPDSGATNHLTYD 375
           + N+AS   ++  N+    W+PDSGATNH+T D
Sbjct: 331 QTNMASTTGKLVSNNN--VWFPDSGATNHITND 361


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 46.2 bits (108), Expect(2) = 4e-06
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +3

Query: 18  GRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFS------YNNRARCQI*NYSNH 179
           GR  G  + RGR       GRG S G + +F G+G  +S       ++R RCQ+ +   H
Sbjct: 237 GRSGGRGFSRGR-----GRGRGPSRGGFQSF-GRGNNYSGATDADTSSRPRCQVCSRVGH 290

Query: 180 KAEKCYYRFDMNFAP 224
            A  C+YRFD N+ P
Sbjct: 291 TALNCWYRFDENYVP 305



 Score = 31.2 bits (69), Expect(2) = 4e-06
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 292 SFGSQVTENSQEIYWYPDSGATNHLTYD 375
           S  S   +N   + WY D+GAT+H+T D
Sbjct: 309 SANSAAHQNGSNVPWYTDTGATDHITGD 336


>ref|XP_009140684.1| PREDICTED: uncharacterized protein LOC103864678 [Brassica rapa]
          Length = 201

 Score = 49.7 bits (117), Expect(2) = 7e-06
 Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 15  QGRVRGNIYGRGRLIYQ---FQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSNHKA 185
           +G  RG   GRG    Q   F    G+SA R  N  G G      NR  CQI     H A
Sbjct: 50  RGGYRGGYRGRGSYTTQGRGFPQQFGQSAQRSSNGAGAGA----GNRPTCQICGKYGHSA 105

Query: 186 EKCYYRFDMNFAPASKQQQLSTIS 257
             CY RFD++FA A +Q Q + ++
Sbjct: 106 NACYRRFDLHFAVAEQQPQANVLT 129



 Score = 26.9 bits (58), Expect(2) = 7e-06
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1

Query: 334 WYPDSGATNHLT 369
           WYPDSG+++H+T
Sbjct: 138 WYPDSGSSHHVT 149


>ref|XP_012467037.1| PREDICTED: uncharacterized protein LOC105785479 [Gossypium
           raimondii]
          Length = 263

 Score = 40.8 bits (94), Expect(2) = 9e-06
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 48  GRLIYQFQNGRGRS--AGRYGNFRGKGR-RFSYNNRARCQI*NYSNHKAEKCYYRFDMNF 218
           GR   QF  G   S   G   +FRG+GR R   + + +CQ+ +   H   KCYYRFD  F
Sbjct: 105 GRQAKQFGQGSRLSFRGGCSKDFRGRGRGRKFMHAKPQCQLCSRIGHTVHKCYYRFDEFF 164

Query: 219 APASKQ 236
              S+Q
Sbjct: 165 EGVSQQ 170



 Score = 35.4 bits (80), Expect(2) = 9e-06
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 277 RVNVASFGSQVTENS-QEIYWYPDSGATNHLTYD 375
           + N+AS    V+ N+     W+PDSGATNH+T D
Sbjct: 205 QANMASTSGPVSSNNVTSTVWFPDSGATNHVTND 238