BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00027304
         (2973 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...  1325   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]        1325   0.0  
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...  1322   0.0  
gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...  1321   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...  1321   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...  1321   0.0  
ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392...  1310   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...  1308   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...  1278   0.0  
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...  1084   0.0  
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             988   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     979   0.0  
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       945   0.0  
gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposo...   914   0.0  
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...   850   0.0  
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   759   0.0  
gb|KYP48234.1| Retrovirus-related Pol polyprotein from transposo...   750   0.0  
gb|KYP77007.1| Retrovirus-related Pol polyprotein from transposo...   743   0.0  
gb|KYP50361.1| Retrovirus-related Pol polyprotein from transposo...   729   0.0  
gb|KYP39660.1| Retrovirus-related Pol polyprotein from transposo...   725   0.0  

>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 1325 bits (3429), Expect = 0.0
 Identities = 660/984 (67%), Positives = 774/984 (78%), Gaps = 5/984 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 2046
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + 
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTR 780

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVN 435
            EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMD 840

Query: 434  FEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKA 255
            F++A + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKA
Sbjct: 841  FQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900

Query: 254  RLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEV 75
            RLVAKGYSQR GIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSAFLNG LEEEV
Sbjct: 901  RLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 74   YIEQPAGYVVEGQEDKVLKLKKAL 3
            YIEQP GY+V+G+EDKVL+LKK L
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKVL 984


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 1325 bits (3428), Expect = 0.0
 Identities = 660/984 (67%), Positives = 775/984 (78%), Gaps = 5/984 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  +A+Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 2046
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E+A+ VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + 
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTR 780

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVN 435
            EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMD 840

Query: 434  FEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKA 255
            F++A + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKA
Sbjct: 841  FQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900

Query: 254  RLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEV 75
            RLVAKGYSQR GIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSAFLNG LEEEV
Sbjct: 901  RLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 74   YIEQPAGYVVEGQEDKVLKLKKAL 3
            YIEQP GY+V+G+EDKVL+LKK L
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKVL 984


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score = 1322 bits (3422), Expect = 0.0
 Identities = 658/984 (66%), Positives = 774/984 (78%), Gaps = 5/984 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 2046
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFK 303

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            S+K MVRGLPCI+HP+Q+CEGCLLG QF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+D GGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTS 603

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+R+KLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFI 723

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+D+    E + 
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKP---EPTR 780

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVN 435
            EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMD 840

Query: 434  FEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKA 255
            F+EA + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKA
Sbjct: 841  FQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900

Query: 254  RLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEV 75
            RLVAKGYSQRAGIDYDE+FAPVARLET+RLIISLAAQNKWKIHQMDVKSAFLNG LEEEV
Sbjct: 901  RLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 74   YIEQPAGYVVEGQEDKVLKLKKAL 3
            YIEQP GY+V+G+EDKVL+LKK L
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKVL 984


>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 673/982 (68%), Positives = 772/982 (78%), Gaps = 3/982 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            
Sbjct: 8    FQVPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKE
Sbjct: 68   KALCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+I
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSI 187

Query: 2399 EQLLGSLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+ K  V   K EEN H                     
Sbjct: 188  EQLLGSLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQ 246

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 2046
                         +               RYDKS+++CYNC KFGHYA +CR PN  +V 
Sbjct: 247  GRRPNNNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVE 302

Query: 2045 ERANLVEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGN 1869
            E+AN  EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GN
Sbjct: 303  EKANYAEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGN 360

Query: 1868 VSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDN 1689
            V+FGD+SKVAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+N
Sbjct: 361  VAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNN 420

Query: 1688 NLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLEL 1509
            NLSIRDN +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLEL
Sbjct: 421  NLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLEL 480

Query: 1508 LSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNS 1329
            LSKK MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S
Sbjct: 481  LSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRS 540

Query: 1328 FGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFT 1149
             GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFT
Sbjct: 541  LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFT 600

Query: 1148 SKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVAC 969
            SKEFQ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVAC
Sbjct: 601  SKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVAC 660

Query: 968  AVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIF 789
            AVYL+NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IF
Sbjct: 661  AVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIF 720

Query: 788  IGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQS 609
            IGYD NSKGYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q 
Sbjct: 721  IGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQP 780

Query: 608  GEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFE 429
             E P                  ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+
Sbjct: 781  QETPTTPPTSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQ 839

Query: 428  EATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARL 249
            EA   K W +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARL
Sbjct: 840  EAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARL 899

Query: 248  VAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYI 69
            VAKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSAFLNGVLEEEVYI
Sbjct: 900  VAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYI 959

Query: 68   EQPAGYVVEGQEDKVLKLKKAL 3
            EQP GY V+G+EDKVL+LKKAL
Sbjct: 960  EQPQGYEVKGEEDKVLRLKKAL 981


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 673/982 (68%), Positives = 772/982 (78%), Gaps = 3/982 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            
Sbjct: 8    FQVPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKE
Sbjct: 68   KALCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+I
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSI 187

Query: 2399 EQLLGSLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+ K  V   K EEN H                     
Sbjct: 188  EQLLGSLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQ 246

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 2046
                         +               RYDKS+++CYNC KFGHYA +CR PN  +V 
Sbjct: 247  GRRPNNNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVE 302

Query: 2045 ERANLVEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGN 1869
            E+AN  EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GN
Sbjct: 303  EKANYAEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGN 360

Query: 1868 VSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDN 1689
            V+FGD+SKVAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+N
Sbjct: 361  VAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNN 420

Query: 1688 NLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLEL 1509
            NLSIRDN +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLEL
Sbjct: 421  NLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLEL 480

Query: 1508 LSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNS 1329
            LSKK MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S
Sbjct: 481  LSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRS 540

Query: 1328 FGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFT 1149
             GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFT
Sbjct: 541  LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFT 600

Query: 1148 SKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVAC 969
            SKEFQ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVAC
Sbjct: 601  SKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVAC 660

Query: 968  AVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIF 789
            AVYL+NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IF
Sbjct: 661  AVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIF 720

Query: 788  IGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQS 609
            IGYD NSKGYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q 
Sbjct: 721  IGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQP 780

Query: 608  GEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFE 429
             E P                  ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+
Sbjct: 781  QETPTTPPTSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQ 839

Query: 428  EATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARL 249
            EA   K W +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARL
Sbjct: 840  EAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARL 899

Query: 248  VAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYI 69
            VAKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSAFLNGVLEEEVYI
Sbjct: 900  VAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYI 959

Query: 68   EQPAGYVVEGQEDKVLKLKKAL 3
            EQP GY V+G+EDKVL+LKKAL
Sbjct: 960  EQPQGYEVKGEEDKVLRLKKAL 981


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 1321 bits (3418), Expect = 0.0
 Identities = 660/984 (67%), Positives = 773/984 (78%), Gaps = 5/984 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 2046
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QK LELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSL 543

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VYL NRSPT+SV GKTPQEAW+GRK G+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + 
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTR 780

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVN 435
            EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMD 840

Query: 434  FEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKA 255
            F+EA + K W +AMDEEIKSI+KNDTWEL  LP GHK IGVKWVYK KKN+KGEVERYKA
Sbjct: 841  FQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKA 900

Query: 254  RLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEV 75
            RLVAKGY QRAGIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSAFLNG LEEEV
Sbjct: 901  RLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 74   YIEQPAGYVVEGQEDKVLKLKKAL 3
            YIEQP GY+V+G+EDKVL+LKKAL
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKAL 984


>ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392554, partial [Brassica
            napus]
          Length = 2682

 Score = 1310 bits (3390), Expect = 0.0
 Identities = 654/981 (66%), Positives = 769/981 (78%), Gaps = 2/981 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS+++ A+LGAHDVWE+VEKG+ E +++  LS T+            
Sbjct: 1357 FQVPLLTKSNYDNWSLRLMAILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDSRKRDK 1416

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK++ A ++K+ W+KL+ SYKG E+VKKVRLQTLR EF++LQMKE
Sbjct: 1417 KALCLIYQGLDEDTFEKVAGAKTSKEAWEKLRTSYKGAEQVKKVRLQTLRGEFEALQMKE 1476

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GEL+SDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD+ F+ I T+IEETKDLETMT+
Sbjct: 1477 GELISDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDSKFEHIVTVIEETKDLETMTM 1536

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+LK  +   +     H                     
Sbjct: 1537 EQLLGSLQAYEEKKKKKEDIVEQVLKMRIDHKEESGRNHPRRGGGHFRGRGRGVNGRGWR 1596

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNT-RVN 2046
                         +               RYDKS ++CY+C KFGHYA +C+ PN  RV 
Sbjct: 1597 PYEDNFN-----QRGENSSRGRGRGNPKSRYDKSSIKCYSCGKFGHYASECKTPNNNRVE 1651

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E++N VEE++++  ++LL+A   +   +   WYLD+GASNHMCG ++MFVELDESV  +V
Sbjct: 1652 EKSNYVEERRKE-EDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDV 1710

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+S++ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDN+
Sbjct: 1711 ALGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNS 1770

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LS+RDN NNLI +VPMS NRMF+LNIQ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 1771 LSLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELL 1830

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            SKK MV+GLPCI+HP+Q+CEGCLLGKQF+ SFPKES +R++KPLELIH DVCGPIKP+S 
Sbjct: 1831 SKKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSL 1890

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLKQKS               ESGL IK+MR+DRGGEF S
Sbjct: 1891 GKSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMS 1950

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPR+PQQNGVAERKNRTIL M RSMLKSKK+PKE WAEAVACA
Sbjct: 1951 KEFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACA 2010

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VY+SNRSPT+SV  KTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 2011 VYISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 2070

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYD NSKGYKLYNP   K I SR+VIFDEEGEWDW ++ +DYNF P FE++    VEQ  
Sbjct: 2071 GYDANSKGYKLYNPETKKTIISRNVIFDEEGEWDWRSNNEDYNFFPSFEEEN---VEQPR 2127

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEE 426
            EEP                  ER   R RSL+++YEVT+  +NLTLFCLFADCEP+NFEE
Sbjct: 2128 EEPATPPTSPTTSSQGDESSSERT-PRFRSLQDIYEVTENQDNLTLFCLFADCEPMNFEE 2186

Query: 425  ATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLV 246
            A + K W  AMDEEIKSI+KNDTWELA LP GHKAIGVKWVYK KKN+KGEVERYKARLV
Sbjct: 2187 AQEKKSWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLV 2246

Query: 245  AKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIE 66
            AKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQ  W+IHQMDVKSAFLNG LEEEVYIE
Sbjct: 2247 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIE 2306

Query: 65   QPAGYVVEGQEDKVLKLKKAL 3
            QP GY+VEG+EDKVL+LKKAL
Sbjct: 2307 QPQGYIVEGEEDKVLRLKKAL 2327



 Score = 1303 bits (3371), Expect = 0.0
 Identities = 652/981 (66%), Positives = 768/981 (78%), Gaps = 2/981 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++M A+LGAHDVWE+VEKG+ E +++  LS T+            
Sbjct: 18   FQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDSRKRDK 77

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LI+Q LD+D FEK++ A ++K+ W+KL+ SYKG E+VKKVRLQTLR EF++LQMKE
Sbjct: 78   KALCLIHQGLDEDTFEKVAGAKTSKEAWEKLRTSYKGAEQVKKVRLQTLRGEFEALQMKE 137

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GEL+SDYFSRVLTV+N LKRNGEKL++V IMEK+LRSLD+ F+ I TIIEETKDLETMT+
Sbjct: 138  GELISDYFSRVLTVTNNLKRNGEKLDEVRIMEKVLRSLDSKFEHIVTIIEETKDLETMTM 197

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+LK  +   +     +                     
Sbjct: 198  EQLLGSLQAYEEKKKKKEDIVEQVLKMRIDHKEESGRSNLRRGGGHFRGRGCGVNGRGWR 257

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 2046
                         +               RYDKS ++CY+C KFGHYA +C+ PN  RV 
Sbjct: 258  PYEDNFN-----QRGENSSRGRGRGNPKSRYDKSSIKCYSCGKFGHYASECKTPNKNRVE 312

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E++N VEE+ ++  ++LL+A   +   +   WYLD+GASNHMCG ++MFVELDESV  +V
Sbjct: 313  EKSNYVEERSKE-EDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDV 371

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+S++ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDN+
Sbjct: 372  ALGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNS 431

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LS+RDN NNLI +VPMS NRMF+LNIQ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 432  LSLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELL 491

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            SKK MV+GLPCI+HP+Q+CEGCLLGKQF+ SFPKES +R++KPLELIH DVCGPIKP+S 
Sbjct: 492  SKKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSL 551

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLKQKS               ESGL IK+MR+DRGGEF S
Sbjct: 552  GKSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMS 611

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPR+PQQNGVAERKNRTIL M RSMLKSKK+PKE WAEAVACA
Sbjct: 612  KEFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACA 671

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VY+SNRSPT+SV  KTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 672  VYISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 731

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYD NSKGYKLYNP   K I SR+VIFDEEGEWDW ++ +DYNF P FE++    VEQ  
Sbjct: 732  GYDANSKGYKLYNPETKKTIISRNVIFDEEGEWDWRSNNEDYNFFPSFEEEN---VEQPR 788

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEE 426
            EEP                  ER   R RSL+++YEVT+  +NLTLFCLFADCEP+NFEE
Sbjct: 789  EEPATPPTSPTTSSQGDESSSERT-PRFRSLQDIYEVTENQDNLTLFCLFADCEPMNFEE 847

Query: 425  ATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLV 246
            A + K W  AMDEEIKSI+KNDTWELA LP GHKAIGVKWVYK KKN+KGEVERYKARLV
Sbjct: 848  AQEKKSWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLV 907

Query: 245  AKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIE 66
            AKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQ  W+IHQMDVKSAFLNG LEEEVYIE
Sbjct: 908  AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIE 967

Query: 65   QPAGYVVEGQEDKVLKLKKAL 3
            QP GY+V+G+EDKVL+LKKAL
Sbjct: 968  QPQGYIVKGEEDKVLRLKKAL 988


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score = 1308 bits (3384), Expect = 0.0
 Identities = 665/977 (68%), Positives = 766/977 (78%), Gaps = 3/977 (0%)
 Frame = -2

Query: 2924 LKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFL 2745
            L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            KAL L
Sbjct: 2    LTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCL 61

Query: 2744 IYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVS 2565
            IYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVS
Sbjct: 62   IYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVS 121

Query: 2564 DYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLG 2385
            DYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLG
Sbjct: 122  DYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG 181

Query: 2384 SLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXX 2208
            SLQA+EEKKKKK  + +Q+ K  V   K EEN H                          
Sbjct: 182  SLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQGRRPN 240

Query: 2207 XXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANL 2031
                    +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN 
Sbjct: 241  NNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANY 296

Query: 2030 VEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGD 1854
             EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD
Sbjct: 297  AEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGD 354

Query: 1853 DSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIR 1674
            +SKVAV+GKG +LI+LK+G HQFISN+YYVP+MK+NILSLGQLLEKGYDI LK+NNLSIR
Sbjct: 355  ESKVAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIR 414

Query: 1673 DNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKN 1494
            DN +  I +VPM RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GL+LLSKK 
Sbjct: 415  DNTSRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLDLLSKKA 474

Query: 1493 MVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSN 1314
            MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSN
Sbjct: 475  MVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSN 534

Query: 1313 YFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQ 1134
            YFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ
Sbjct: 535  YFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQ 594

Query: 1133 EFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLS 954
            ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+
Sbjct: 595  KYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLT 654

Query: 953  NRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDN 774
            NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD 
Sbjct: 655  NRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDA 714

Query: 773  NSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPI 594
            NSKGYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P 
Sbjct: 715  NSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPT 774

Query: 593  XXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQN 414
                             ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   
Sbjct: 775  TPPTSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGK 833

Query: 413  KKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGY 234
            K W +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGY
Sbjct: 834  KSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGY 893

Query: 233  SQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAG 54
            SQRAGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSAFLNGVLEEEVYIEQP G
Sbjct: 894  SQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQG 953

Query: 53   YVVEGQEDKVLKLKKAL 3
            Y V+G+EDKVL+LKKAL
Sbjct: 954  YEVKGEEDKVLRLKKAL 970


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 645/981 (65%), Positives = 757/981 (77%), Gaps = 2/981 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 2223
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 2222 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 2046
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 2045 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1866
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1865 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 1686
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 1685 LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 1506
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 1505 SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 1326
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 1325 GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 1146
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 1145 KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 966
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 965  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 786
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 785  GYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSG 606
            GYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+D+    E + 
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKP---EPTR 780

Query: 605  EEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEE 426
            EEP                    +EE T         + ++E          CEP++F+E
Sbjct: 781  EEP-------------------PSEEPT--TPPTSPTSSQIEE--------KCEPMDFQE 811

Query: 425  ATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLV 246
            A + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKARLV
Sbjct: 812  AIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLV 871

Query: 245  AKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIE 66
            AKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSAFLNG LEEEVYIE
Sbjct: 872  AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 931

Query: 65   QPAGYVVEGQEDKVLKLKKAL 3
            QP GY+V+G+EDKVL+LKKAL
Sbjct: 932  QPQGYIVKGEEDKVLRLKKAL 952


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score = 1084 bits (2804), Expect = 0.0
 Identities = 533/712 (74%), Positives = 602/712 (84%), Gaps = 2/712 (0%)
 Frame = -2

Query: 2132 YDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEEK-KEDGANVLLLARNDNGEGQD 1959
            YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE+ +EDG   LLLA     +G+D
Sbjct: 207  YDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEERCQEDGT--LLLAYKGQDKGED 264

Query: 1958 DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1779
            + WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SKVAV+GKG +LIRLK+G HQFIS
Sbjct: 265  NQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFIS 324

Query: 1778 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 1599
            NVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN +  IA+VPM+RNRMF+LNIQ+D
Sbjct: 325  NVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSD 384

Query: 1598 VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 1419
              +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVRGLPCI+HP+Q+CEGCLLGKQFR
Sbjct: 385  GPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFR 444

Query: 1418 QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 1239
             SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS   
Sbjct: 445  LSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVF 504

Query: 1238 XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 1059
                        ESGL IKA+R+DRGGEFTSKEFQ++CE NGIRR LTVPRSPQQNGVAE
Sbjct: 505  ENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAE 564

Query: 1058 RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 879
            RKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRSPTRSV GKTPQEAW+GRKPGIS
Sbjct: 565  RKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGIS 624

Query: 878  HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDE 699
            HLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSKGYKLYNP + K I SR+V+FDE
Sbjct: 625  HLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDE 684

Query: 698  EGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTR 519
            EGEWDW T+ +D+ F P  E+D+    +Q  E P                  ER   R R
Sbjct: 685  EGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSER-MPRFR 743

Query: 518  SLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQL 339
            SL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W +AMDEEI++IKKNDTWEL  L
Sbjct: 744  SLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSL 803

Query: 338  PKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLII 159
            PK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLII
Sbjct: 804  PKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 863

Query: 158  SLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            SLAAQN WKIHQMDVKSAFLNGVLEEEVYIEQP GY V+G+EDKVL+LKKAL
Sbjct: 864  SLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKAL 915



 Score =  228 bits (580), Expect = 3e-58
 Identities = 116/180 (64%), Positives = 141/180 (78%)
 Frame = -2

Query: 2924 LKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFL 2745
            L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            KAL L
Sbjct: 2    LTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCL 61

Query: 2744 IYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVS 2565
            IYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVS
Sbjct: 62   IYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVS 121

Query: 2564 DYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLG 2385
            DYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLG
Sbjct: 122  DYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG 181


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  988 bits (2553), Expect = 0.0
 Identities = 486/689 (70%), Positives = 561/689 (81%), Gaps = 3/689 (0%)
 Frame = -2

Query: 2060 NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDES 1881
            N +  E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDES
Sbjct: 261  NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDES 320

Query: 1880 VSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIH 1701
            V GNV+ GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI 
Sbjct: 321  VRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIR 380

Query: 1700 LKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFG 1521
            LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFG
Sbjct: 381  LKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 440

Query: 1520 GLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPI 1341
            GLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPI
Sbjct: 441  GLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 500

Query: 1340 KPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRG 1161
            KP S  KS  F +F     +K   +  K+                  SGL IK MR+DRG
Sbjct: 501  KPKSLEKSEVFKIF-----KKFKAHVEKE------------------SGLVIKTMRSDRG 537

Query: 1160 GEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAE 981
            GEFTSKEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAE
Sbjct: 538  GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 597

Query: 980  AVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSE 801
            AVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSE
Sbjct: 598  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657

Query: 800  KFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVI 621
            K+IFIGYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE   
Sbjct: 658  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP-- 715

Query: 620  VEQSGEEPIXXXXXXXXXXXXXXFLVERNEERT---RSLEELYEVTDKLENLTLFCLFAD 450
             E + EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+
Sbjct: 716  -EPTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAE 774

Query: 449  CEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEV 270
            CEP++F+EA + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEV
Sbjct: 775  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 834

Query: 269  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGV 90
            ERYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMD K AFLNG 
Sbjct: 835  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDFKLAFLNGD 894

Query: 89   LEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
             EEEVYIEQP GY+V+G+EDKVL+LKKAL
Sbjct: 895  FEEEVYIEQPQGYIVKGEEDKVLRLKKAL 923



 Score =  271 bits (694), Expect = 3e-72
 Identities = 137/218 (62%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
 Frame = -2

Query: 2939 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2760
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2759 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 2580
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEALQMKE 127

Query: 2579 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 2400
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 2399 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENF 2289
            EQLLGSLQA+EEKKKKK  + +Q+L   +   +N +++
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMRITKEENGQSY 225


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  979 bits (2530), Expect = 0.0
 Identities = 493/1005 (49%), Positives = 661/1005 (65%), Gaps = 20/1005 (1%)
 Frame = -2

Query: 2957 MASVASFQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKD---ESTLSSTEXXX 2787
            M  V   QVPQL   ++ NWSI+MKALLG+ D WE+VEKGY E  D   E+ LS+     
Sbjct: 1    MGDVIQLQVPQLTKTNYGNWSIRMKALLGSQDCWEIVEKGYIEPGDAATEAALSNDAKKA 60

Query: 2786 XXXXXXXXXKALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRR 2607
                     KAL  I+Q +D+  FEKIS   +AK  W+ LQ S++G EK KKVRLQ+LR 
Sbjct: 61   LREARKKDQKALNSIFQGMDESTFEKISDVKNAKNAWEILQKSFQGVEKAKKVRLQSLRA 120

Query: 2606 EFDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEE 2427
            EF+ L+MK  E + DY +RV +V N++KRNGE L++V +MEKILRSL   F+ +   IEE
Sbjct: 121  EFEMLKMKSSENIDDYANRVKSVVNEMKRNGETLDEVRVMEKILRSLTRKFEYVVVAIEE 180

Query: 2426 TKDLETMTIEQLLGSLQAHEEKKKKKGVADQL-----LKTEVQPTKNEENF-------HX 2283
            +KDL  M++E+L+GSLQAHE+K K    ++ L      K  +   +   NF         
Sbjct: 181  SKDLSKMSLEELVGSLQAHEQKMKLNEDSENLNQALHSKLSIDDGETSNNFSQGRGNRRG 240

Query: 2282 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYN 2103
                                          +Y                 + +KSQVQCYN
Sbjct: 241  YRGGYRGGNRGGRGSRGRGNQSYGRYQENKDYQTSNRGRGSRGRGRGRFQENKSQVQCYN 300

Query: 2102 CQKFGHYARDCRNPNTRVNERANLV--EEKKEDGANVLLLARNDNGEGQDDTWYLDTGAS 1929
            C K+GH++ +CR+ + +V+ER ++    E  E   + + L   +N + +   WYLD GAS
Sbjct: 301  CNKYGHFSYECRSTH-KVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRSVWYLDNGAS 359

Query: 1928 NHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKT 1749
            NHMCGR+ +F ELDE+V G ++FGD+S   +KGKG ++I  ++G  ++IS+VYYVP +K+
Sbjct: 360  NHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISDVYYVPALKS 419

Query: 1748 NILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYK 1569
            N++SLGQLLEKGY++H+KD +L+IR+    L+ RV M+RNR+F L+I++   KC+K   K
Sbjct: 420  NLISLGQLLEKGYEVHMKDRSLAIRNKSGELVVRVDMTRNRLFTLDIESGEVKCMKTDLK 479

Query: 1568 DSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSR 1389
            + SWLWHLR+GHL F GL+LLSK NMV GLP I+HPDQLCE C+ GKQ RQ F    + R
Sbjct: 480  NESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQKFEVGKSRR 539

Query: 1388 SQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXX 1209
            +++PLE++H D+ GP    S G + Y+L FIDD+SRK WVYFLK KS             
Sbjct: 540  ARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMV 599

Query: 1208 XXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMV 1029
              +SG ++K +R+DRGGE+T+K ++ FC+ +GI   LT  R+PQQNGVAERKNRTIL+M 
Sbjct: 600  EKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMA 659

Query: 1028 RSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAH 849
            RSM+K K +P+ FWAEAV CAVYL N+ PT+SV  KTP+EAW+G KP + HL++FG IA+
Sbjct: 660  RSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAY 719

Query: 848  VHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHA 669
             HVP++QR KLDD+ EK IFIGYD  SK Y+LYNP+  K+I SRDV FDE   W W    
Sbjct: 720  AHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYWRWSEEE 779

Query: 668  KDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTD 489
            K    +  F +D+    EQ  ++                  ++    RTRSL ++Y  T+
Sbjct: 780  KKVEGL-FFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSLNDIYNSTE 838

Query: 488  KLE---NLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAI 318
             +E   + +LFCL  +C+PV +EEA +N KW  AMDEEI +I++NDTWEL  LP+GH  I
Sbjct: 839  PVETQFDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTSLPEGHSPI 898

Query: 317  GVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNK 138
            GVKWVYK K N +G+VE+YKARLVAKGY QR G+DYDE+FAPVAR++TIRL+I++AAQ K
Sbjct: 899  GVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLIAVAAQYK 958

Query: 137  WKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            WKI+QMDVKSAFLNG LEEEVYIEQP GY ++G+EDKV +LKK+L
Sbjct: 959  WKIYQMDVKSAFLNGYLEEEVYIEQPPGYSIQGKEDKVYRLKKSL 1003


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  945 bits (2442), Expect = 0.0
 Identities = 491/1006 (48%), Positives = 657/1006 (65%), Gaps = 21/1006 (2%)
 Frame = -2

Query: 2957 MASVAS-FQVPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXX 2784
            MA+V     +P+L K   ++NWSI+MKALLG+ D WEVVE+G+EE  + +  ++ +    
Sbjct: 1    MANVTGQIPLPRLTKATRYDNWSIQMKALLGSQDSWEVVEEGFEEPTNTTGYTAAQTKAL 60

Query: 2783 XXXXXXXXKALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRRE 2604
                     AL+++Y+A+D+  FEKI+ A+++K+ WD L+  +KG ++VK+VRLQTLR E
Sbjct: 61   KEMRSKDKAALYMLYRAVDEAIFEKIAGASTSKEAWDILEKVFKGADRVKQVRLQTLRGE 120

Query: 2603 FDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEET 2424
             ++++M E E VSDY +RV  V NQL RNGE L D  ++EKILR+L  NF+SI   IEE+
Sbjct: 121  LENMKMMESESVSDYITRVQAVVNQLNRNGETLTDARVVEKILRTLTDNFESIVCAIEES 180

Query: 2423 KDLETMTIEQLLGSLQAHEEKKKKKG--VADQLLKTEVQPTKNEENFHXXXXXXXXXXXX 2250
            KDL T+T+++L GSL+AHE++KKKK     +Q L+T+      +  +H            
Sbjct: 181  KDLATLTVDELAGSLEAHEQRKKKKKEETLEQALQTKASIKDEKVLYHQNSQYRGRGRGS 240

Query: 2249 XXXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDC 2070
                                                  R + S ++CY C K+GHYA+DC
Sbjct: 241  RGNGRGGKGSNHEGYYKEKEQSSQPNWRGRGRGRGRGGRSNYSNIECYKCHKYGHYAKDC 300

Query: 2069 RNP-----------------NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLD 1941
             +                  + ++ E  NL  E  E    VLL+A+++     D  WYLD
Sbjct: 301  NSDKCYNCGKVGHFAKDCRADIKIEETTNLALEV-ETNEGVLLMAQDEVNINNDTLWYLD 359

Query: 1940 TGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVP 1761
            +GASNHMCG   +F ++ +   G+VSFGD SKV VKG+GT+    KDG    + +VYYVP
Sbjct: 360  SGASNHMCGHEYLFKDMQKIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVYYVP 419

Query: 1760 TMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLK 1581
             +KTNILS+GQL EKGY I LKD  L +++    L+AR+ M+RNRM+ LN+++   KCL+
Sbjct: 420  DLKTNILSMGQLTEKGYSIFLKDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIREKCLQ 479

Query: 1580 MCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKE 1401
            +  +D + LWHLRFGHL+ GGL+ L+KKNMV GLP + +  + CE C+L K  R SFPK+
Sbjct: 480  VNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKK 539

Query: 1400 SNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXX 1221
            +   +++PLELIH D+CGPI P SF    YF+ FIDDFSRKTWVYFLK+KS         
Sbjct: 540  AQYWAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEVFKKF 599

Query: 1220 XXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTI 1041
                   +   IKA+R+DRGGE+TS  F E+CE  GIRR LT P +PQQNGVAERKNRTI
Sbjct: 600  KVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKNRTI 659

Query: 1040 LNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFG 861
            L+MVRSMLKSKKMPKEFWAEAV CA+Y+ NR P   +  +TPQEAW+G+KP +SHL+VFG
Sbjct: 660  LDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLKVFG 719

Query: 860  SIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDW 681
            S+A+ HVPD++R+KL+DKS++++FIGYD  +KGYKL +PI+ K+  SRDV  +E  EWDW
Sbjct: 720  SVAYAHVPDQRRTKLEDKSKRYVFIGYDEKTKGYKLLDPISKKVTVSRDVQINEASEWDW 779

Query: 680  GTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELY 501
                          +  +V++E     P                  E  + + RSL +LY
Sbjct: 780  -------------NNSSEVMIEVGESSPTSINSETTDDED------EPRQPKIRSLHDLY 820

Query: 500  EVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKA 321
            + T+++    L CL AD E ++FEEA ++KKW  AMDEEIK+I +N+TWEL +LP+G + 
Sbjct: 821  DSTNEVH---LVCLLADAENISFEEAVRDKKWQTAMDEEIKAIDRNNTWELTELPEGSQP 877

Query: 320  IGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQN 141
            IGVKW++K K NA+GE+ERYKARLVAKGY Q+ GIDYDEVFAPV R+ETIRL+IS AAQ 
Sbjct: 878  IGVKWIFKKKMNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQAAQF 937

Query: 140  KWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            KW I QMDVKSAFLNGVLEEEVYIEQP GY+  G+E KVLKLKKAL
Sbjct: 938  KWPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKAL 983


>gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  914 bits (2363), Expect = 0.0
 Identities = 479/990 (48%), Positives = 639/990 (64%), Gaps = 13/990 (1%)
 Frame = -2

Query: 2933 VPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXK 2757
            VPQL +  ++ENWS++MKALL +  +WEVV+KGYEE ++E  L+ T+             
Sbjct: 3    VPQLTQETNYENWSLQMKALLRSQRLWEVVQKGYEEPEEEEELTVTQLATLEKMQAKDSS 62

Query: 2756 ALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEG 2577
            AL+ +Y A+D+  FEKI SA ++K+ W+ L+V+++G  +V+++RLQTLR EF++L+M++ 
Sbjct: 63   ALYFLYNAVDELDFEKIGSAANSKEAWETLEVAHRGSSRVRQIRLQTLRGEFENLKMEDR 122

Query: 2576 ELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIE 2397
            E ++++ SRV  V+NQL R+GE + +  I+EKILRSL+ +FD +   IEE+KDL T+T+E
Sbjct: 123  EPITEFVSRVQKVTNQLMRSGEPVPENRIVEKILRSLNKDFDYVVCAIEESKDLTTLTVE 182

Query: 2396 QLLGSLQAHEEK-KKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXX 2220
            +L GSL+AHE++ KK K   DQ L+  ++ T  +                          
Sbjct: 183  ELAGSLKAHEQRIKKGKEPLDQALQARLEFTGGQST------------------------ 218

Query: 2219 XXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNTRVNER 2040
                        Q                 +     CY C K GH A+ C+N  +     
Sbjct: 219  ------------QKGGSRGRGSRGRGGRAKECRTATCYKCGKIGHIAKYCKNDTSE---- 262

Query: 2039 ANLVEEKKEDGANVLLLARNDNGE---GQDDT-----WYLDTGASNHMCGRRTMFVELDE 1884
             NL  E+  +   VL+L R+D  E   G +D+     WYLDTGASNHMCG+ ++F +L +
Sbjct: 263  KNLFSEEGNEEVGVLMLTRSDECETSRGIEDSPDTSIWYLDTGASNHMCGQESLFSDLVK 322

Query: 1883 SVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDI 1704
              +G+VSFGD+SK+AV+G GTI    KDGR   I NV YVP ++TNILS+GQ++EKG  +
Sbjct: 323  QEAGSVSFGDNSKIAVRGSGTIRHVQKDGRVGEIRNVLYVPKLRTNILSMGQIMEKGNSV 382

Query: 1703 HLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNF 1524
             +KD  L +RD  N LIA   M  NRM+ L +     KCLK+ +KD + +WH RFGHLNF
Sbjct: 383  LMKDRGLYLRDRNNRLIACEEMKENRMYKLELNILQKKCLKLDHKDEAMIWHYRFGHLNF 442

Query: 1523 GGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGP 1344
            GGL  LSKK +V GLP I    + CE C+LGK  R  FPK +  R+++ L LIH D+CGP
Sbjct: 443  GGLNELSKKELVHGLPGIKFEKKFCEECVLGKHHRVGFPKSALYRTEEKLGLIHTDLCGP 502

Query: 1343 IKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDR 1164
            I P+SF    YF+ FIDD SRKTWVY L++KS               E+G  IK +R+DR
Sbjct: 503  ISPSSFSGKKYFISFIDDLSRKTWVYLLQEKSEAFEVFKRFRLMVEKETGRQIKGIRSDR 562

Query: 1163 GGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWA 984
            GGEF S  F E+CE +GIRR LT P SPQQNGVAERKNRTI++MVRSMLK K M ++FWA
Sbjct: 563  GGEFISSSFMEYCEDHGIRRFLTAPYSPQQNGVAERKNRTIMDMVRSMLKGKNMLEKFWA 622

Query: 983  EAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKS 804
            EAV CAVY+ NR P   + G TPQEAW+GRKP +SH +VFGSIA+ HVP + R+KLDD+S
Sbjct: 623  EAVQCAVYIQNRCPHSKLNGATPQEAWSGRKPSVSHFKVFGSIAYAHVPAQLRTKLDDRS 682

Query: 803  EKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQV 624
            +K+I IGYD  +K YKLYNP+  K++ SRDV  DEEGEW+W   +   +      D ++ 
Sbjct: 683  KKYILIGYDERAKAYKLYNPVTSKMLVSRDVQVDEEGEWNWENRSASSDLGTANSDRDRT 742

Query: 623  IVEQSGEEPIXXXXXXXXXXXXXXFLVERNE---ERTRSLEELYEVTDKLENLTLFCLFA 453
             + ++G   I               + E +E    RTR+L +LYE T+++    + CL  
Sbjct: 743  EIRRTGSSAIRIGSSDNSGGRIHEQIEEEDEAVRPRTRTLHDLYESTNEMH---VICLLI 799

Query: 452  DCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGE 273
              E + FEEA  ++KW  AM+EEI SI+KN TWEL  LP   + IG+KWVYK K NA GE
Sbjct: 800  GTEEIKFEEAVLDEKWRKAMNEEIVSIEKNGTWELTDLPTETRPIGLKWVYKKKYNADGE 859

Query: 272  VERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNG 93
            VERYKARLVAKGY Q+ GIDYDEVFAPV R+E+IRL+IS+AAQN W IHQMDVKSAFLNG
Sbjct: 860  VERYKARLVAKGYKQQKGIDYDEVFAPVTRIESIRLLISVAAQNGWTIHQMDVKSAFLNG 919

Query: 92   VLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            +LEEE+Y+EQP GY+  G+E+KVLKLKKAL
Sbjct: 920  ILEEEIYVEQPLGYMRRGEEEKVLKLKKAL 949


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
            copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  850 bits (2196), Expect = 0.0
 Identities = 417/646 (64%), Positives = 502/646 (77%), Gaps = 1/646 (0%)
 Frame = -2

Query: 1937 GASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPT 1758
            G     CG +  FVELD+ V GNVSFGD SKV ++GKGTILI LKDG H+ I++VYYVP 
Sbjct: 31   GVEGVTCGCKEKFVELDKKVKGNVSFGDSSKVQIQGKGTILISLKDGAHKLITDVYYVPK 90

Query: 1757 MKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKM 1578
            +K+NILSLGQL+EKGY+IH+KD  L +RD  +NLIA+V MSRNRMF LNI+T+ AKCLK 
Sbjct: 91   LKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKA 150

Query: 1577 CYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKES 1398
              KD SW WH+RFGHLNFG L+ L ++ MV+G+P I+HP+QLCE CLLGK  R+SFPKE+
Sbjct: 151  SIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEA 210

Query: 1397 NSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXX 1218
            NSR+++PL+L++ DVCGPI P S G + YFLLFIDD+SRKTWVYFLKQKS          
Sbjct: 211  NSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFK 270

Query: 1217 XXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTIL 1038
                 ESG  IKA+R+DRGGEFTSKEF EFCE  GIRRPLTVPRSPQQNGVAERKNRTIL
Sbjct: 271  ALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTIL 330

Query: 1037 NMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGS 858
            NM R MLK+K MPKEFWAEAVACAVYLSNRSPT++V  +TPQEAW+G KP + HLRVFGS
Sbjct: 331  NMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGS 390

Query: 857  IAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWG 678
            IA+ HVPD+ R KLDD+SEK +FIGYD +SKGYKLYNP NGK I SRDV F EEG W+W 
Sbjct: 391  IAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWE 450

Query: 677  THAKDYNFVPEFED-DEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELY 501
                 Y+F P FE+ DE+ +        +                      R R+++ELY
Sbjct: 451  EKEDTYDFFPYFEEIDEEALTPNDSTPALSPTPSTNEASSSSEGSSSERPRRMRNIQELY 510

Query: 500  EVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKA 321
            + T+ + +  LFCLF D +P+NF+EA ++K+W  AM+EEIK+I+KN+TWEL+ LPKGH+A
Sbjct: 511  DETEVIND--LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELSSLPKGHEA 568

Query: 320  IGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQN 141
            IGVKWV+K+KKNAKGEVER+KARLVAKGY Q+  +DYDEVFAPVAR+ETIRL+ISLAAQ 
Sbjct: 569  IGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEVDYDEVFAPVARMETIRLLISLAAQM 628

Query: 140  KWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            KW+I Q DVKSAFLNG LEE+VY+EQP G+V+EGQE KVLKL KAL
Sbjct: 629  KWRIFQFDVKSAFLNGYLEEDVYVEQPMGFVIEGQEGKVLKLNKAL 674


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  759 bits (1960), Expect = 0.0
 Identities = 397/869 (45%), Positives = 531/869 (61%), Gaps = 1/869 (0%)
 Frame = -2

Query: 2606 EFDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEE 2427
            EF++L+M+ GE V+DYFSR + + N+++ +G+K EDV I+EKILRS+   F+ +   IEE
Sbjct: 83   EFETLRMRSGESVTDYFSRTMAIXNKMRIHGDKTEDVTIVEKILRSMTPXFNFVVCSIEE 142

Query: 2426 TKDLETMTIEQLLGSLQAHEEKKKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXX 2247
            + D++ ++I++L  SL  HE K  ++   +Q LK         EN               
Sbjct: 143  SHDIDELSIDELQSSLLVHERKFNQQEKEEQALKAST------ENHLATRGDRXRGRSRG 196

Query: 2246 XXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCR 2067
                              N  Q                 DKS V+CY C ++GHY  +CR
Sbjct: 197  RGRGNYDRGNQHQHQRQDNRFQGRGQGGNYSTTYKSXSTDKSNVECYRCHRYGHYKXECR 256

Query: 2066 -NPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVEL 1890
             N N +  ER N  E+++E     LL+A + N     + WY+DTG SNHMCG ++ F +L
Sbjct: 257  TNMNKQGEERTNFAEKEEEVS---LLMACHANQXTHPNLWYIDTGCSNHMCGDKSAFSDL 313

Query: 1889 DESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGY 1710
            DE+   +V+FGD+SKV+V GKG++ I  K+   Q ISNV++VP +KTN+LS+ QL EKGY
Sbjct: 314  DETFRXSVTFGDNSKVSVMGKGSVXIHSKEKSDQIISNVFFVPDLKTNLLSVXQLQEKGY 373

Query: 1709 DIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHL 1530
            +I +KD    I+D    LIA+V M+ NRMF L +      C      D  WLWH R+GHL
Sbjct: 374  EIFIKDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHL 433

Query: 1529 NFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVC 1350
            NFGGL+ L +KNMV GLP I  P Q+CE C++GKQ R  FPK  + R  K LEL+H+D+C
Sbjct: 434  NFGGLKTLQQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDIC 493

Query: 1349 GPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRT 1170
            GPI P S G   YF+ FI D+S KTWVYFL++KS               E+   IK  R+
Sbjct: 494  GPINPTSNGGKRYFITFIXDYSXKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRS 553

Query: 1169 DRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEF 990
            D GGE+TS+EF  FCE +GI++ LT   SPQQNG + RKNRTILNMVR++L    +P+ F
Sbjct: 554  DXGGEYTSQEFVNFCENHGIQKQLTAAYSPQQNGXSXRKNRTILNMVRTILSKGHIPRSF 613

Query: 989  WAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDD 810
            W EAV  ++++ NRSPT  V   TP EAWNGRKP ++H R+FG IA+ H+P ++R KLDD
Sbjct: 614  WPEAVIWSIHILNRSPTLVVQNVTPXEAWNGRKPSVNHFRIFGCIAYAHIPXQKRKKLDD 673

Query: 809  KSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDE 630
            K EK IF+G    SK YKLYNPI  KI  SRD+IFDE   W W  +        +F+ + 
Sbjct: 674  KGEKCIFLGVSEXSKAYKLYNPITKKIXISRDIIFDEGSFWKWDDNTTKQQIQABFDGEN 733

Query: 629  QVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFAD 450
            +   +Q  ++ I                +  NE  T +  E    T + +      +  +
Sbjct: 734  EEERQQPLQQQIPXAE------------IPPNEAPTTA--ETSPTTPEFDEQVEAXVGXN 779

Query: 449  CEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEV 270
            C+P  FE A +  KW  AMD EI +I++NDTWEL++LPKGHK IGVKWVYK K    GEV
Sbjct: 780  CDPTTFESAVKESKWRKAMDAEIAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEV 839

Query: 269  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGV 90
            ++YKARLVAKGY Q  G+DY EVFAPVAR +TIRL+I+LAAQN W I Q+DV SAFL+G 
Sbjct: 840  DKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVXSAFLHGN 899

Query: 89   LEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            LEE+V+++QP GY+    E KV +LKKAL
Sbjct: 900  LEEQVFVDQPPGYIKVKNEHKVYRLKKAL 928


>gb|KYP48234.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1029

 Score =  750 bits (1937), Expect = 0.0
 Identities = 403/975 (41%), Positives = 581/975 (59%), Gaps = 13/975 (1%)
 Frame = -2

Query: 2888 MKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFLIYQALDDDGFEK 2709
            M+ + G  DV ++V++G +E   +S  +  +            KALF+I+Q +D   FEK
Sbjct: 1    MRVIFGFQDVLDIVKEGVQEM--DSGATEAQKAANKEAKKKDCKALFIIHQCVDMGNFEK 58

Query: 2708 ISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFSRVLTVSNQ 2529
            IS+ T+ K+ W+ L+ ++ G +K+K VRLQTLRR+++ LQM+  E V  YF+RVL+++N 
Sbjct: 59   ISNVTTTKEAWEILERAHAGNDKLK-VRLQTLRRQYELLQMEGNEEVGAYFTRVLSLTNL 117

Query: 2528 LKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQAHEEKKKKK 2349
            +K  GE++   +I+EK+LRSL   FD I   IEE+K+LE + +E+L  SL+AHE++  ++
Sbjct: 118  MKSYGERISSQMIVEKVLRSLLPRFDHIVVAIEESKNLEILKVEELQVSLEAHEQRMVER 177

Query: 2348 GV---ADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYMQX 2178
                 A+Q L+      + E + +                                  + 
Sbjct: 178  SAEKTAEQALQVHSVKHEGEASRNK---------------------------------RG 204

Query: 2177 XXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANV 1998
                          + +K  +QC+NCQ++GHYA +C N     NE A LV+E   D   V
Sbjct: 205  RGKWKHNRGRGGRKKVNKRHIQCFNCQRWGHYAEECYNKKEHNNE-AQLVKEDDSDSDQV 263

Query: 1997 LLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTI 1818
            LL+      E  ++ WYLDTG S+HM GR+  F +LDESV   V F D   +  +G G +
Sbjct: 264  LLMVTTKTVENSENLWYLDTGCSSHMTGRKDWFSKLDESVKSKVKFADHKTLDAEGIGEV 323

Query: 1817 LIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPM 1638
             IR K+ +   ISNV +VP MK+N+LS GQLLE+G+ + +++N +++ DN   LI R P+
Sbjct: 324  AIRSKNRQRSLISNVLFVPHMKSNLLSFGQLLERGFKMVMENNGMTVYDNKKRLILRAPL 383

Query: 1637 SRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPD 1458
            S+NR F + IQ    +CL        WLWH RFGHLNF  L LLS+ NMV GLP +  P 
Sbjct: 384  SKNRTFRVEIQVLEHQCLVSAVNSEEWLWHYRFGHLNFRDLNLLSRYNMVTGLPRLHQPK 443

Query: 1457 QLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRK 1278
            ++C  C+  KQ R +F +    RS+  LE++++DVCGP++  S G + YF+ FIDDFSRK
Sbjct: 444  EMCRECVECKQPRNTFKQHVPIRSRCKLEVVYSDVCGPLQTESLGGNKYFVTFIDDFSRK 503

Query: 1277 TWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPL 1098
             WVY +K K                +    +K +RTD GGE+ S EF  FCE  GI   +
Sbjct: 504  VWVYLIKNKGDVFSTFKKFKCLAEKQCDCSVKILRTDGGGEYVSAEFTSFCEDEGIVHEV 563

Query: 1097 TVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKT 918
            T P +PQ NG AERKNRT++NMVRSMLKSK +PK  W EAV+ A Y+ NRSPT+ + G T
Sbjct: 564  TPPYTPQHNGTAERKNRTLMNMVRSMLKSKGLPKYLWGEAVSTAAYILNRSPTKRLQGVT 623

Query: 917  PQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPIN 738
            P+E W+G KP  SH R FGS+ + HVP++ R KL+DK ++ I +GY + + GYK  +P +
Sbjct: 624  PEEIWSGHKPDTSHFRSFGSLCYRHVPNQLRRKLEDKGQQMILVGY-HATGGYKFLDPKS 682

Query: 737  GKIITSRDVIFDEEGEW--DWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXX 564
             +I+ SRDVI DE   W  +  +  K    + +FE +   +   +  EP           
Sbjct: 683  RQIVISRDVIIDEASMWKDETDSKGKTARMLVDFESETTDLHPTATIEP----------- 731

Query: 563  XXXXFLVERNEERTRSLEEL---YEV-----TDKLENLTLFCLFADCEPVNFEEATQNKK 408
                    R  +RTR + +    Y++      +   +L    LF++ EPV+FEEA  + K
Sbjct: 732  --------RRSQRTRQIPQRLHDYDIFSESAVNSEGDLVHLALFSEIEPVSFEEAMDDPK 783

Query: 407  WGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQ 228
            W +AM +E++SI+KN TWEL  LP   K+I VKWVYKVK+   GEV +YKARLVAKG+ Q
Sbjct: 784  WIEAMKDELRSIEKNKTWELVSLPLQKKSIDVKWVYKVKEKPNGEVAKYKARLVAKGFLQ 843

Query: 227  RAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAGYV 48
            +AGIDY +VFAPVAR+ET+RL+++LA+   W ++Q+DVKSAFLNG +EEEVY+ QP  + 
Sbjct: 844  KAGIDYGDVFAPVARIETVRLVVALASLKGWPMYQLDVKSAFLNGEIEEEVYVAQPPSFK 903

Query: 47   VEGQEDKVLKLKKAL 3
            ++GQE+KV KL+KAL
Sbjct: 904  IKGQEEKVYKLRKAL 918


>gb|KYP77007.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1228

 Score =  743 bits (1917), Expect = 0.0
 Identities = 380/719 (52%), Positives = 483/719 (67%), Gaps = 10/719 (1%)
 Frame = -2

Query: 2129 DKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKE------DGANVLLLARNDNGE 1968
            +++   CY+C KFGH A DCR       ++AN+ E + E      D    LLLA N N  
Sbjct: 170  ERTNFNCYHCGKFGHRAADCR-----FKQQANIAENQYEQTGEISDNPQTLLLATN-NFS 223

Query: 1967 GQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQ 1788
            G +  WYLDTG SNHMCG++ +F  LDE+V   V FG++S + + GKG + IRLKDG   
Sbjct: 224  GNEAIWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPILGKGQVAIRLKDGTQN 283

Query: 1787 FISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNI 1608
            FIS+V+Y P +  N+LSLGQL EKGY+I + D    + D    LIA+V MS NR+F LN+
Sbjct: 284  FISDVFYAPGLHHNLLSLGQLSEKGYNIQIHDGYCMLIDKNRRLIAKVKMSPNRLFPLNV 343

Query: 1607 QTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGK 1428
            Q D   CL    ++  WLWH+RFGH +F GL  LS+K  V GLP I+ P  +CE C +GK
Sbjct: 344  QYDKIPCLSSIIQNDDWLWHMRFGHYHFSGLNFLSRKEYVSGLPVINIPKGICETCEIGK 403

Query: 1427 QFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKS 1248
            + R+SFP   + R++KPLE++H+D+C  ++  S G S YF+ FIDDFSRK+WVYFLKQKS
Sbjct: 404  KHRESFPTGKSWRARKPLEIVHSDLC-MVEIPSHGGSRYFITFIDDFSRKSWVYFLKQKS 462

Query: 1247 XXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNG 1068
                           +S   IKA+RTDRG E+ +    +F + +GI+  +T   +PQQNG
Sbjct: 463  EACDAFKSFKALVEKQSSCKIKALRTDRGQEYLA--CADFIDHHGIQHQMTTRYTPQQNG 520

Query: 1067 VAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKP 888
            VAERKNRTI++MVR MLK+K+MP+EFWAEAV+ AVY+ NR PT+SV  KTP+EAW+GRKP
Sbjct: 521  VAERKNRTIMDMVRCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKP 580

Query: 887  GISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVI 708
             I HLR+FG IA+ HVPD+ R KLDDK EK IFIGY  NSK YKLYNP+  K+I SRDV 
Sbjct: 581  SIRHLRIFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVT 640

Query: 707  FDEEGEWDWGTHAKDYNFV-PEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXFLVERNE 531
            FDEEG WDW   A+    V  E  ++E   V+ + +EP                  +R  
Sbjct: 641  FDEEGMWDWSFKAQKVPAVNSENYEEENGHVDTTPDEPETSSRP------------QRQR 688

Query: 530  ERTRSLEELYEVTDKL---ENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKND 360
                 LE+     D     E +  F LFADCEPV FEEA+ N+ W  AMDEEI +I+KN 
Sbjct: 689  RLPARLEDYVVGNDNDPSDEEIINFALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQ 748

Query: 359  TWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARL 180
            TWEL  LP   + IGVKWVYK K  + GE++R+KARLVAKGY Q+ GIDY EVFAPVARL
Sbjct: 749  TWELTDLPANKRQIGVKWVYKTKYKSNGEIDRFKARLVAKGYKQKPGIDYFEVFAPVARL 808

Query: 179  ETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKKAL 3
            +TIR++IS++AQN WKIHQMDVKSAFLNG LEEEVY+EQPAGY ++G+EDKV +LKKAL
Sbjct: 809  DTIRMLISISAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYKIKGKEDKVYRLKKAL 867



 Score = 70.9 bits (172), Expect = 8e-09
 Identities = 36/107 (33%), Positives = 67/107 (62%), Gaps = 8/107 (7%)
 Frame = -2

Query: 2588 MKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLET 2409
            M   E V  YFSRV  + N+++  GE + +  ++EKILR++   FD + T I E+ D+E 
Sbjct: 1    MTNSESVEQYFSRVTDLVNKMRVYGEDIPESKVVEKILRTMPMKFDHVVTTIIESHDIEI 60

Query: 2408 MTIEQLLGSLQAHEEK--KKKKGVADQLLKTEV------QPTKNEEN 2292
            MT+ +L GS+++H  +  +K + + ++ LK++V      +P++NE++
Sbjct: 61   MTVAELQGSIESHVSRILEKTEKINEEALKSQVNFTNIAEPSRNEDS 107


>gb|KYP50361.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1310

 Score =  729 bits (1882), Expect = 0.0
 Identities = 372/722 (51%), Positives = 489/722 (67%), Gaps = 12/722 (1%)
 Frame = -2

Query: 2132 YDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGE----- 1968
            Y+   ++CYNC   GH ++DCR+   +  E  N + E++++G  +LL+      E     
Sbjct: 254  YECYSIKCYNCGNLGHISKDCRSEKKK-EEPTNFLAEEEDEG--LLLVTTIPETEIKPSC 310

Query: 1967 GQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQ 1788
              +  WYLDTGASNHMCG   +F  L +   G+VSFGD SKV VKG+GTI  + ++G+  
Sbjct: 311  TDNSVWYLDTGASNHMCGDEHLFKMLSKEEVGSVSFGDASKVTVKGRGTIRYQQRNGKIG 370

Query: 1787 FISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNI 1608
             I +VYYVP +K+NILS+GQL+EKGY + +KD  L ++D +  L+A+V M +NRM+ L +
Sbjct: 371  EIRDVYYVPDLKSNILSMGQLMEKGYSVLMKDRELQLKDKLGRLVAQVEMKKNRMYKLEL 430

Query: 1607 QTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGK 1428
            +    +C+++  +D +  WH RFGHL+F GL  L KK MV GLP +    + CE C++GK
Sbjct: 431  KIVRDECMQLDLEDEAMKWHRRFGHLHFRGLTELVKKEMVIGLPKMEFEKKFCEECVIGK 490

Query: 1427 QFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKS 1248
              R SFP+ S  R+++ L LIH D+CGPI P SF    YFL FIDDFSRKTWVYFLK+K 
Sbjct: 491  HARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFLSFIDDFSRKTWVYFLKEKL 550

Query: 1247 XXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNG 1068
                           E+   +KA+R+DRGGEFTS EF ++CE +GI+R LT P SPQQNG
Sbjct: 551  EVFETFKKFKVMVEKETSKFVKAVRSDRGGEFTSFEFNKYCEEHGIKRFLTAPYSPQQNG 610

Query: 1067 VAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKP 888
            VAERKNRTIL+MVRSMLK K MPK+FWAEAV CAVY+ NR P   +  KTPQE W+G KP
Sbjct: 611  VAERKNRTILDMVRSMLKGKNMPKKFWAEAVQCAVYVQNRCPHAKLGEKTPQEIWSGMKP 670

Query: 887  GISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVI 708
             +SHLRVFGS+A+  VP +QR+KL+D+S+K+IFIGYD  SK YKL++P N K++ SRDV 
Sbjct: 671  SVSHLRVFGSLAYGQVPRQQRTKLEDRSKKYIFIGYDEKSKAYKLFDPDNKKVVVSRDVH 730

Query: 707  FDEEGEWDWGTHAKDYNFVPEFEDDEQVIV-------EQSGEEPIXXXXXXXXXXXXXXF 549
             +E  +W W   A+    V    D   ++V       E S EE                 
Sbjct: 731  VEETKQWCWSNSAE----VETSSDSSDIVVPSTITTTELSDEES---------------- 770

Query: 548  LVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIK 369
              E  + R RSL E+Y+ T ++  +   CL AD E ++FE+A Q++KW  AMDEE ++I+
Sbjct: 771  --ELQQPRMRSLREIYDTTSEVHAV---CLLADSEDLSFEKAVQDEKWRTAMDEEFEAIE 825

Query: 368  KNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPV 189
            +N TWEL  LP+G + IGVKWVYK K NA+GEVERYKARLV KGY Q+ G+DYDEVFAPV
Sbjct: 826  RNKTWELTNLPEGARPIGVKWVYKKKLNAEGEVERYKARLVVKGYKQKEGVDYDEVFAPV 885

Query: 188  ARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQEDKVLKLKK 9
             R+E+IRL+ISLAAQ +WKI QMDVKSAFLNGVL+EEVY+EQP GY+  G+E KVL+L+K
Sbjct: 886  TRMESIRLLISLAAQRQWKILQMDVKSAFLNGVLKEEVYVEQPLGYMKRGEEKKVLRLRK 945

Query: 8    AL 3
            AL
Sbjct: 946  AL 947



 Score =  191 bits (486), Expect = 3e-46
 Identities = 96/208 (46%), Positives = 147/208 (70%), Gaps = 1/208 (0%)
 Frame = -2

Query: 2933 VPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXK 2757
            +P+L K  +++NW ++MKALLG+ D W+VVE GYEE       ++ +             
Sbjct: 10   LPKLTKDVNYDNWKLQMKALLGSQDNWDVVENGYEEPVTTEGYTNAQMNALKVARAKDKA 69

Query: 2756 ALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEG 2577
            AL+L+Y+A+D+ GFEKI++A S+K+ WD L+ + KG+E+VK+VRLQTLR E ++++MKE 
Sbjct: 70   ALYLLYRAVDESGFEKIANAKSSKEAWDILEKAKKGDERVKQVRLQTLRGELENMRMKES 129

Query: 2576 ELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIE 2397
            E VS++ +RV TV+N+L RNGE L    ++EKILRSL  +F++I   IEE+KDL T+T+E
Sbjct: 130  EGVSEFITRVETVANKLNRNGENLPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVE 189

Query: 2396 QLLGSLQAHEEKKKKKGVADQLLKTEVQ 2313
            +L GSL+A+E++KK K    + L+  +Q
Sbjct: 190  ELTGSLEAYEQRKKNKKEKGESLEQALQ 217


>gb|KYP39660.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1195

 Score =  725 bits (1871), Expect = 0.0
 Identities = 371/730 (50%), Positives = 488/730 (66%), Gaps = 20/730 (2%)
 Frame = -2

Query: 2132 YDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGE----- 1968
            Y+   ++CYNC   GH ++DCR+   +  E  N + E++++G  +LL+      E     
Sbjct: 131  YECYSIKCYNCGNLGHISKDCRSEKKK-EEPTNFLAEEEDEG--LLLVTTIPETEIKPSC 187

Query: 1967 --------GQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILI 1812
                      +  WYLDTGASNHMCG   +F  L +   G+VSFGD SKV VKG+GTI  
Sbjct: 188  SSEIKPSCTDNSVWYLDTGASNHMCGDEHLFKMLSKEEVGSVSFGDASKVTVKGRGTIRY 247

Query: 1811 RLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSR 1632
            + ++G+   I +VYYVP +K+NILS+GQL+EKGY + +KD  L ++D +  L+A+V M +
Sbjct: 248  QQRNGKIGEIRDVYYVPDLKSNILSMGQLMEKGYSVLMKDRELQLKDKLGRLVAQVEMKK 307

Query: 1631 NRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQL 1452
            NRM+ L ++    +C+++  +D +  WH RFGHL+F GL  L KK MV GLP +    + 
Sbjct: 308  NRMYKLELKIVRDECMQLDLEDEAMKWHRRFGHLHFRGLTELVKKEMVIGLPKMEFEKKF 367

Query: 1451 CEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTW 1272
            CE C++GK  R SFP+ S  R+++ L LIH D+CGPI P SF    YF+ FIDDFSRKTW
Sbjct: 368  CEECVIGKHARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTW 427

Query: 1271 VYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTV 1092
            VYFLK+K                E    +KA+R+DRGGEFTS EF ++CE +GI+R LT 
Sbjct: 428  VYFLKEKLEVFETFKKFKVMVEKEMSTFVKAVRSDRGGEFTSFEFNKYCEEHGIKRFLTA 487

Query: 1091 PRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQ 912
            P SPQQNGVAERKNRTIL+MVRSMLK K MPK+FWAEAV CAVY+ NR P   +  KTPQ
Sbjct: 488  PYSPQQNGVAERKNRTILDMVRSMLKGKNMPKKFWAEAVQCAVYVQNRCPHAKLGEKTPQ 547

Query: 911  EAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGK 732
            E W+G KP +SHLRVFGS+A+  VP +QR+KL+D+S+K+IFIGYD  SK YKL++P N K
Sbjct: 548  EIWSGMKPSVSHLRVFGSLAYGQVPRQQRTKLEDRSKKYIFIGYDEKSKAYKLFDPDNKK 607

Query: 731  IITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIV-------EQSGEEPIXXXXXXX 573
            ++ SRDV  +E  +W W   A+    V    D   ++V       E S EE         
Sbjct: 608  VVVSRDVHVEETKQWCWSNSAE----VETSSDSSDIVVPSTITTTELSDEES-------- 655

Query: 572  XXXXXXXFLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAM 393
                      E  + R RSL E+Y+ T ++  +   CL AD E ++FE+A Q++KW  AM
Sbjct: 656  ----------ELQQPRMRSLREIYDTTSEVHAV---CLLADSEDLSFEKAVQDEKWRTAM 702

Query: 392  DEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGID 213
            DEE ++I++N TWEL  LP+G + IGVKWVYK K NA+GEVERYKARLV KGY Q+ G+D
Sbjct: 703  DEEFEAIERNKTWELTNLPEGARPIGVKWVYKKKMNAEGEVERYKARLVVKGYKQKEGVD 762

Query: 212  YDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGVLEEEVYIEQPAGYVVEGQE 33
            YDEVFAPV R+E+IRL+ISLAAQ +WKI QMDVKSAFLNGVL+EEVY+EQP GY+  G+E
Sbjct: 763  YDEVFAPVTRMESIRLLISLAAQRQWKILQMDVKSAFLNGVLKEEVYVEQPLGYMKRGEE 822

Query: 32   DKVLKLKKAL 3
             KVL+L+KAL
Sbjct: 823  KKVLRLRKAL 832



 Score = 89.7 bits (221), Expect = 1e-14
 Identities = 45/94 (47%), Positives = 68/94 (72%)
 Frame = -2

Query: 2594 LQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDL 2415
            ++MKE E VS++ +RV TV+N+L RNGE L    ++EKILRSL  +F++I   IEE+KDL
Sbjct: 1    MRMKESEGVSEFITRVETVANKLNRNGENLPSNRVVEKILRSLTDDFENIVCAIEESKDL 60

Query: 2414 ETMTIEQLLGSLQAHEEKKKKKGVADQLLKTEVQ 2313
              +T+E+L GSL+A+E++KK K    + L+  +Q
Sbjct: 61   SMLTVEELTGSLEAYEQRKKNKKEKGESLEQALQ 94