BLASTX nr result
ID: Rehmannia28_contig00027076
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00027076
(1297 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 454 e-145
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 446 e-142
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 421 e-138
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera] 403 e-125
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 333 e-101
emb|CAN81655.1| hypothetical protein VITISV_042593 [Vitis vinifera] 321 e-100
gb|EEC78771.1| hypothetical protein OsI_19003 [Oryza sativa Indi... 310 1e-98
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc... 320 4e-95
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ... 319 9e-95
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group] 318 2e-94
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group... 318 2e-94
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc... 318 2e-94
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc... 317 4e-94
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo... 306 5e-94
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc... 318 8e-94
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo... 317 8e-94
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group] 317 9e-94
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc... 317 9e-94
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa... 316 3e-93
gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subc... 315 3e-93
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 454 bits (1167), Expect = e-145
Identities = 228/390 (58%), Positives = 292/390 (74%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSS 346
KLPP+W+DFKNYLKHKRKEM +EDLI++LRIEEDNRR + K E+KAN +EHG SS
Sbjct: 191 KLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSS 250
Query: 347 NSKKRPNDKGKKPAAG---------KFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANV 499
+K N+KGK G KFQG C+NCGK H + DCR PKK K K ANV
Sbjct: 251 KAKTN-NNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPK---EANV 306
Query: 500 VEE--RELTEVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDKDAFSSYIP-STGRKLH 667
+++ + + ++D++AVV E NLV NPKEW++DTGAT HVCSDK FS++ P G K+
Sbjct: 307 IDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVF 366
Query: 668 MGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKF 847
MGN A+S++ G G V+LK+TSGKEL L +VL+VP+IRKNLVSGSLL NHGFRLVF S K
Sbjct: 367 MGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKV 426
Query: 848 VLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLN 1027
VLSK G ++G+GY+ G++K+NVMT+ + NMNK S+S Y+ E SNLWH RLGHVN +
Sbjct: 427 VLSKSGMYVGKGYMSDGMWKLNVMTIIK--SNMNK-ASTSTYMLESSNLWHGRLGHVNYD 483
Query: 1028 AIKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVERSTSPLELIHTDVCDLKFVQT 1207
++RL+NL I ++NS KCE CVEAK+ + F SVER+T PL+LIH+D+CDLKFVQT
Sbjct: 484 TLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQT 543
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
+GG KYFITF+DD T++CY+YLL+SKDEA+
Sbjct: 544 RGGNKYFITFVDDSTKYCYVYLLKSKDEAI 573
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 446 bits (1148), Expect = e-142
Identities = 224/390 (57%), Positives = 289/390 (74%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSS 346
KLPP+W+DFKNYLKHKRKEM +EDLI++LRIEEDNRR + K E++AN +EHG SS
Sbjct: 191 KLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSS 250
Query: 347 NSKKRPNDKGKKPAAG---------KFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANV 499
+K N+KGK G KFQG C+NCGK H + DCR PKK K K ANV
Sbjct: 251 KAKTN-NNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPK---EANV 306
Query: 500 VEE--RELTEVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDKDAFSSYIP-STGRKLH 667
++ + ++++D++ VV E NLV NPKEW++DTGAT HVCSDK FS++ P G K+
Sbjct: 307 IDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVF 366
Query: 668 MGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKF 847
MGN +S++ G G V+LK+TSGKEL L +VL+VP+IRKNLV GSLL NHGFRLVFES K
Sbjct: 367 MGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKV 426
Query: 848 VLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLN 1027
VLSK G ++G+GY+ G++K+NVMT+ + NMNK S+S Y+ E SNLWH RL HVN +
Sbjct: 427 VLSKSGMYVGKGYMSDGMWKLNVMTIIK--SNMNK-ASTSTYMLESSNLWHGRLRHVNYD 483
Query: 1028 AIKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVERSTSPLELIHTDVCDLKFVQT 1207
++RL+NL I ++NS KCE CVEAK+ + F SVER+T PL+LIH+D+CDLKFVQT
Sbjct: 484 TLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQT 543
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
+GG KYFITF+DD T++CY+YLL+SKDEA+
Sbjct: 544 RGGNKYFITFVDDSTKYCYVYLLKSKDEAI 573
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 421 bits (1081), Expect = e-138
Identities = 206/381 (54%), Positives = 280/381 (73%), Gaps = 4/381 (1%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSS 346
KLPP+W+DFK+YLKHK+KEM +E L+VKLRIEEDNR + + +KAN +EHG
Sbjct: 192 KLPPAWKDFKSYLKHKQKEMNIEGLVVKLRIEEDNRNAERIGAI--SMAKANFVEHGPKK 249
Query: 347 NSKKRPNDKGKKPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANVVEE--RELT 520
KK G KFQG CYNC K H A DCR PKKK+ ANVVE + ++
Sbjct: 250 KKKKLGPKGGISKKQTKFQGKCYNCDKMGHKASDCRLPKKKR-----EANVVENITQHVS 304
Query: 521 EVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDKDAFSSYIPSTGR-KLHMGNHASSDV 694
++++SAVV E N+V NP+EW++DTGAT HVCSDK F+S+ ++ R KL MGN A+S++
Sbjct: 305 DINLSAVVLEVNMVGSNPREWWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEI 364
Query: 695 AGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLSKFGQFL 874
G G V LK+TSGKEL L +VL+VP+IRKNLVSGSLL HGFR+VFES+ VLSK G ++
Sbjct: 365 EGQGKVALKMTSGKELTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYV 424
Query: 875 GRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLNAIKRLVNLE 1054
G+GY++ GLFK+NVMT++ +N +SS Y+ E SN+WH RLGHVN N++++L+N++
Sbjct: 425 GKGYVNDGLFKLNVMTLK---PTINNKATSSAYLLESSNIWHGRLGHVNFNSLRKLINMK 481
Query: 1055 LINLPEVNSQRKCEVCVEAKMAKLPFHSVERSTSPLELIHTDVCDLKFVQTKGGKKYFIT 1234
I +++ + KC+ CVEAK+ + F ++R++ PL+LIH+D+CD K +QT+GG KYFIT
Sbjct: 482 HIPNFQIDLKHKCKTCVEAKLTRSSFQIIQRNSEPLDLIHSDICDFKSIQTRGGNKYFIT 541
Query: 1235 FIDDCTRFCYLYLLRSKDEAL 1297
FIDDCT++CY+YLL+SKDEAL
Sbjct: 542 FIDDCTKYCYVYLLKSKDEAL 562
>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 403 bits (1035), Expect = e-125
Identities = 208/381 (54%), Positives = 262/381 (68%), Gaps = 4/381 (1%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSS 346
KLPP W+DFKNYLKHKRKEM LE+LIV+LRIEEDNR+ + K ME+KAN++E G +
Sbjct: 361 KLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNN-SMEAKANVIEQGPKT 419
Query: 347 NSKKRPNDKGKKP---AAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANVVEEREL 517
N K++ D+ + A KF+G CYNCGK H + D R
Sbjct: 420 NKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYR--------------------- 458
Query: 518 TEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIP-STGRKLHMGNHASSDV 694
N KEW+VDTGAT H+CS+K FS+Y P +L MGN +SS +
Sbjct: 459 ----------------NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKI 502
Query: 695 AGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLSKFGQFL 874
G G V+LK+TSGKEL L DVLHVPDI KNLVSGSLL +GF+LVF S+KFVL+K F+
Sbjct: 503 EGRGKVILKMTSGKELTLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFV 562
Query: 875 GRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLNAIKRLVNLE 1054
G+GYL GLFKMNVMTV N NK +SS+ Y+ + SN+WH RLGHVN + + RL++L+
Sbjct: 563 GKGYLSDGLFKMNVMTVVPKSINNNKIDSSA-YLLKSSNIWHGRLGHVNYDTLCRLIHLD 621
Query: 1055 LINLPEVNSQRKCEVCVEAKMAKLPFHSVERSTSPLELIHTDVCDLKFVQTKGGKKYFIT 1234
+ ++ KCE CVE+K+ K+PFHSVERST PL+L H+D+CDLKFVQT+GGKKYFIT
Sbjct: 622 YLPKFNIDPNHKCETCVESKLTKVPFHSVERSTEPLDLFHSDICDLKFVQTRGGKKYFIT 681
Query: 1235 FIDDCTRFCYLYLLRSKDEAL 1297
FIDDCTR+CY+YLL+SKDEA+
Sbjct: 682 FIDDCTRYCYVYLLKSKDEAI 702
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 333 bits (853), Expect = e-101
Identities = 185/379 (48%), Positives = 246/379 (64%), Gaps = 18/379 (4%)
Frame = +2
Query: 173 PPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSSNS 352
P W+DFKNYLKHKRKEM +EDLI++LRIEEDNRR + K E+KAN +EHG SS +
Sbjct: 114 PLPWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKA 173
Query: 353 KKRPNDKGKKPAAG---------KFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANVVE 505
K N+KGK G KFQG C+NCGK H + DCR PKK K K ANV++
Sbjct: 174 KTN-NNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPK---EANVID 229
Query: 506 E--RELTEVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDKDAFSSYIP-STGRKLHMG 673
+ + + ++D++AVV E NLV NPKEW++DTGAT HVCSDK FS++ P G K+ MG
Sbjct: 230 DITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMG 289
Query: 674 NHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVL 853
N A+S++ G G V+LK+TSGKEL L +VL+VP+IRKNLVSGSLL NHGFRL
Sbjct: 290 NSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRL--------- 340
Query: 854 SKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLNAI 1033
G ++G+GY+ G++K+NVMT+ + NMNK S+S Y+ E SNLWH RLGHVN + +
Sbjct: 341 --SGMYVGKGYMSDGMWKLNVMTIIK--SNMNK-ASTSTYMLESSNLWHGRLGHVNYDTL 395
Query: 1034 KRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVERSTSPLELIHTDVCD-----LKF 1198
+RL+NL I ++NS KCE CVE K K + + L T+V + +K
Sbjct: 396 RRLINLNHIPTFQINSNHKCETCVEVKTNK------DEAIEKFVLYKTEVENQLNKKIKV 449
Query: 1199 VQTKGGKKYFITFIDDCTR 1255
+++ G +Y F+D C +
Sbjct: 450 LRSDRGGEYESPFVDICAQ 468
>emb|CAN81655.1| hypothetical protein VITISV_042593 [Vitis vinifera]
Length = 627
Score = 321 bits (823), Expect = e-100
Identities = 179/361 (49%), Positives = 233/361 (64%), Gaps = 1/361 (0%)
Frame = +2
Query: 218 KEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEHGSSSNSKKRPNDKGKKPAAGK 397
K + ++ KL+IEEDNR K P ESK NL+E PN K+ +
Sbjct: 43 KSFQVAAIVEKLKIEEDNRVSKKKVGKHPTESKTNLVE----------PNANKKRKDFSE 92
Query: 398 FQGACYNCGKPNHMAKDCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKE 577
CY C K H AK+CR ++ K E+ELT + + V+FEAN+VDNP E
Sbjct: 93 VCWKCYICNKQGHRAKNCRLKEQSK-----------EKELTNMLSALVLFEANMVDNPNE 141
Query: 578 WFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDV 757
+VDTG T HV +++ FS+Y+ GR L M N+A+S V G+ VVLK+T GKEL L DV
Sbjct: 142 RWVDTGVTRHVYGERNIFSTYVLVNGRNLIMRNYATSRVVGIRKVVLKMTFGKELVLTDV 201
Query: 758 LHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFG 937
LHV DIR NLVSGS+L +GF+LVFES+KFVL K G ++G+GY+ GLFKMNVMTV+
Sbjct: 202 LHVLDIRNNLVSGSMLSKNGFKLVFESDKFVLMKNGMYVGKGYMTNGLFKMNVMTVKL-- 259
Query: 938 ENMNKNESSS-VYIAECSNLWHIRLGHVNLNAIKRLVNLELINLPEVNSQRKCEVCVEAK 1114
+ N N++S+ VY+ E LWH RLGHV+ +KRL+N+ L+ ++ + KCEVCVEAK
Sbjct: 260 -DFNNNKASTFVYLIESFTLWHDRLGHVSNKTLKRLINMNLLPSFSIDFKHKCEVCVEAK 318
Query: 1115 MAKLPFHSVERSTSPLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEA 1294
MAK PFHS+ER+T L+LIH+D+ K YFITFIDDCTR+ Y+YLLRSK EA
Sbjct: 319 MAKPPFHSIERNTESLDLIHSDI----------WKMYFITFIDDCTRYYYVYLLRSKYEA 368
Query: 1295 L 1297
L
Sbjct: 369 L 369
>gb|EEC78771.1| hypothetical protein OsI_19003 [Oryza sativa Indica Group]
Length = 422
Score = 310 bits (793), Expect = 1e-98
Identities = 179/391 (45%), Positives = 243/391 (62%), Gaps = 14/391 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LK+KR+E + DLI L +EE R D++ K V S AN+++ H
Sbjct: 25 KLPPSWSDFATSLKYKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNPH 84
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K GK +G C+ CGK H A DC PK+K K +AN
Sbjct: 85 ASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKSGHWANDC--PKRKDRK---SAN 139
Query: 497 -VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMG 673
V+ E T + ++ +P +W+VDTGA HVC+D FSSY G L MG
Sbjct: 140 MVISESRGTSAYGKILPIVLSVFHSP-DWWVDTGANIHVCADISLFSSYHVGRGSSLLMG 198
Query: 674 NHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVL 853
N + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+
Sbjct: 199 NRSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVV 258
Query: 854 SKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLN 1027
SK+G F+ +G GLF+ ++ ++M N + +I++ SN+WH RL +VN +
Sbjct: 259 SKYGTFVRKGCDSGGLFRFSL-------DDMCNNHNFVNHISDNDESNVWHSRLCYVNFS 311
Query: 1028 AIKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQ 1204
+ RLVN+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V
Sbjct: 312 CMTRLVNMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVL 371
Query: 1205 TKGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
TKGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 372 TKGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 402
>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 320 bits (820), Expect = 4e-95
Identities = 179/390 (45%), Positives = 240/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 268 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 327
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 328 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 382
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 383 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 442
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 443 ESLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 502
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 503 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEIDESNVWHSRLCHVNFGC 555
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 556 LTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 616 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 645
>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 319 bits (817), Expect = 9e-95
Identities = 182/389 (46%), Positives = 240/389 (61%), Gaps = 12/389 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L IEE R D++ K + S ANL++ H
Sbjct: 123 KLPPSWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGKKIEGGSSANLVQKKNPH 182
Query: 335 GSSSNSKK-RPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNA 493
S +N+KK +P+ K K K GK +G C+ CGKP H AKDC + K KK+ A
Sbjct: 183 ASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDCPERKDKKS-----A 237
Query: 494 NVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMG 673
N+V + + + V + +W+VDTGA HVC+D FSSY G L MG
Sbjct: 238 NMVISEDGGTLGYGKFLPTVLSVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMG 297
Query: 674 NHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVL 853
N + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+
Sbjct: 298 NGSLAAVHGVGTVDLKFTSGKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLVFESNKCVV 357
Query: 854 SKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAECSNLWHIRLGHVNLNAI 1033
SK+G F+G+GY GLF+ ++ + NK + + SN+WH RL HVN +
Sbjct: 358 SKYGTFIGKGYDSGGLFRFSL------DDMCNKVVNHVSDDDDESNVWHSRLCHVNFGCM 411
Query: 1034 KRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQTK 1210
RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V TK
Sbjct: 412 TRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTK 471
Query: 1211 GGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
GGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 472 GGKKYFMTLIDDCTRFCYVYLLKTKDEAL 500
>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 318 bits (815), Expect = 2e-94
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 123 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 182
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 183 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 237
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 238 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 297
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 298 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 357
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 358 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 410
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 411 MTRLANMSLIPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 470
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF T IDDCTRFCY+YLL++KDEAL
Sbjct: 471 KGGKKYFTTLIDDCTRFCYVYLLKTKDEAL 500
>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708705|gb|ABF96500.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1240
Score = 318 bits (814), Expect = 2e-94
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 123 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 182
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 183 ASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 237
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 238 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISQFSSYQVGRGSSLLMGN 297
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 298 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 357
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 358 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 410
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 411 MMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 470
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 471 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 500
>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1298
Score = 318 bits (815), Expect = 2e-94
Identities = 179/390 (45%), Positives = 240/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 268 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 327
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 328 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 382
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 383 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 442
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 443 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 502
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 503 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 555
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 556 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 616 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 645
>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 317 bits (813), Expect = 4e-94
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V AN+++ H
Sbjct: 268 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGCSANMVQKKNPH 327
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K KK+ AN
Sbjct: 328 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDKKS-----AN 382
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 383 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 442
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 443 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 502
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 503 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 555
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 556 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 616 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 645
>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 714
Score = 306 bits (785), Expect = 5e-94
Identities = 179/418 (42%), Positives = 251/418 (60%), Gaps = 43/418 (10%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLMEH---- 334
KLPPSW +F LKHK L DL+V LRIE+ +R S P ++KA+L+E+
Sbjct: 43 KLPPSWSEFARSLKHKPDNFTLSDLLVTLRIEDKHRISQKVSNKTPFQAKAHLVENANKP 102
Query: 335 ----------------GSSSNSKKRPN---DKGKKPAAGKFQGA---CYNCGKPNHMAKD 448
G SS+ K N + KP + K QG C+ CG+ NH AKD
Sbjct: 103 KQKIFKKSGFSNNNKFGQSSHFSKNKNKAFNNNYKPKS-KIQGNESFCFVCGRNNHFAKD 161
Query: 449 C----RQPK------KKKTKPQSN---ANVVEERELTEVDMSAVVFEANLVDNPKEWFVD 589
C RQPK K ++PQ+N AN + +++ E N + N +W++D
Sbjct: 162 CFHRRRQPKDITSDPKSSSQPQANVITANASSDSPSNRYHVTSP--ELNFIYNSNDWWID 219
Query: 590 TGATCHVCSDKDAFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVP 769
+GA HVC+DK FSSY R + MGN + + V G+G V L+L+SG L L +V HV
Sbjct: 220 SGANVHVCADKKLFSSYQECGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVS 279
Query: 770 DIRKNLVSGSLLVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMN 949
+IRKNL+S +LLV GF++VFES + V+S+ G F+G+GY+ GLFK+++M+ +N
Sbjct: 280 EIRKNLISAALLVQQGFKVVFESNRVVISRHGSFVGKGYICDGLFKLSIMS-----SFIN 334
Query: 950 KN---ESSSVYIAECSNLWHIRLGHVNLNAIKRLVNLELINLPEVNSQRKCEVCVEAKMA 1120
KN SSS+ EC ++WH RLGHVNLN+IKR++ L+LI ++KCEVCV+AK
Sbjct: 335 KNSSISSSSISNVECCDIWHGRLGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQP 394
Query: 1121 KLPF-HSVERSTSPLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDE 1291
+ F +SV++ T LELIH+D+CD V T+GGKKYFITFIDD +++CY+YL+ K E
Sbjct: 395 RKSFQNSVQKETCVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSE 452
>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 318 bits (814), Expect = 8e-94
Identities = 180/390 (46%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 303 KLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGCSSANMVQKKNPH 362
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 363 ASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 417
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
+V ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 418 MVISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 477
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 478 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 537
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 538 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 590
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 591 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 650
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 651 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 680
>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 317 bits (813), Expect = 8e-94
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 249 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 308
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 309 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 363
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 364 MIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 423
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 424 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 483
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N + +I+E SN+WH RL HVN
Sbjct: 484 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNVVNHISENDESNVWHSRLCHVNFGC 536
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 537 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 596
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 597 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 626
>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
Length = 1413
Score = 317 bits (813), Expect = 9e-94
Identities = 179/390 (45%), Positives = 240/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 268 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 327
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 328 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 382
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 383 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGFSLLMGN 442
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 443 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 502
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 503 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 555
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 556 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 616 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 645
>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 317 bits (813), Expect = 9e-94
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 268 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 327
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 328 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 382
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 383 MIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 442
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 443 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 502
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N + +I+E SN+WH RL HVN
Sbjct: 503 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNVVNHISENDESNVWHSRLCHVNFGC 555
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 556 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 616 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 645
>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1408
Score = 316 bits (809), Expect = 3e-93
Identities = 179/390 (45%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 263 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPH 322
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K + GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 323 ASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 377
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTGA HVC+D FSSY G L MGN
Sbjct: 378 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGN 437
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL FRLVFES K V+S
Sbjct: 438 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVS 497
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 498 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 550
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLELIH+D+C++ V T
Sbjct: 551 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLT 610
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 611 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 640
>gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 315 bits (808), Expect = 3e-93
Identities = 178/390 (45%), Positives = 237/390 (60%), Gaps = 13/390 (3%)
Frame = +2
Query: 167 KLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIDSKSKLVPMESKANLME----H 334
KLPPSW DF LKHKR+E + DLI L +EE R D + K V S AN+++ H
Sbjct: 290 KLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGKKVEGGSSANMVQKKNPH 349
Query: 335 GSSSNSKKRPNDKGK------KPAAGKFQGACYNCGKPNHMAKDCRQPKKKKTKPQSNAN 496
S +N K +P+ K K K GK +G C+ CGK H AKDC + K +K+ AN
Sbjct: 350 ASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKS-----AN 404
Query: 497 VVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYIPSTGRKLHMGN 676
++ ++ V + +W+VDTG HVC+D FSSY G L MGN
Sbjct: 405 MIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGTNIHVCADISLFSSYQVGRGSSLLMGN 464
Query: 677 HASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFRLVFESEKFVLS 856
+ V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL GFRLVFES K V+S
Sbjct: 465 GLLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVS 524
Query: 857 KFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC--SNLWHIRLGHVNLNA 1030
K+G F+G+GY GLF+ ++ +M N ++ +I+E SN+WH RL HVN
Sbjct: 525 KYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISENDESNVWHSRLCHVNFGC 577
Query: 1031 IKRLVNLELINLPEVNSQRKCEVCVEAKMAKLPFHSVE-RSTSPLELIHTDVCDLKFVQT 1207
+ RL N+ LI + KC CV++K + P + E R+ +PLEL+H+D+C++ V T
Sbjct: 578 MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 637
Query: 1208 KGGKKYFITFIDDCTRFCYLYLLRSKDEAL 1297
KGGKKYF+T IDDCTRFCY+YLL++KDEAL
Sbjct: 638 KGGKKYFMTLIDDCTRFCYVYLLKTKDEAL 667