BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00025057
         (605 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       231   5e-67
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo...   218   3e-64
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   223   6e-64
ref|XP_009783587.1| PREDICTED: uncharacterized protein LOC104232...   205   3e-63
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     208   6e-59
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   207   1e-58
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   206   4e-58
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   202   4e-58
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   206   6e-58
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   202   8e-58
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   204   2e-57
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   204   2e-57
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     203   4e-57
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   203   4e-57
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   200   3e-56
emb|CBI20118.3| unnamed protein product [Vitis vinifera]              200   5e-56
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     199   7e-56
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   199   8e-56
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]   198   2e-55
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   194   5e-54

>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  231 bits (590), Expect = 5e-67
 Identities = 118/200 (59%), Positives = 145/200 (72%), Gaps = 1/200 (0%)
 Frame = -1

Query: 599  RLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMNVR 423
            R+ RL + G+L QL   +LP CE CL GK  ++ F GK  RA  PLE+VHSD+CGPMNV+
Sbjct: 456  RIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVK 515

Query: 422  ARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGREY 243
            AR G  YF++FIDD+SRYG VYLL H+SE+   FK + AEVEN+  + +K LR+DRG EY
Sbjct: 516  ARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEY 575

Query: 242  LSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDAIL 63
            +  +F+    E GI  QLS P TPQQNGV+ERRN TLL+M RSMM+ A LP SFWG A+ 
Sbjct: 576  MDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALE 635

Query: 62   TAAYILNCVPSKSVPTTPYE 3
            TA +ILN VPSKSV  TPYE
Sbjct: 636  TAIHILNNVPSKSVLETPYE 655


>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 656

 Score =  218 bits (555), Expect = 3e-64
 Identities = 106/202 (52%), Positives = 144/202 (71%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605 QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
           ++R+ +L +EG L Q    +   CE CL GK  + PF GK +RA+  L ++H+D+CGPM 
Sbjct: 375 EKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSPFTGKGERASELLGLIHTDVCGPMK 434

Query: 428 VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
           ++A+ G SYF+TF DD SRYG VYL+ H+SE+   FKRF +EVE Q  +N+KVLR+DRG 
Sbjct: 435 IQAKGGYSYFITFTDDMSRYGFVYLMKHKSESFEMFKRFRSEVEKQTGKNVKVLRSDRGG 494

Query: 248 EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
           EYLS+ F    +E GI+ Q   P TPQ NGV+ERRN TLL+M +SMM   +LPI+ WG A
Sbjct: 495 EYLSNDFLDHLKENGILSQWKPPGTPQHNGVSERRNRTLLDMVKSMMGFTDLPINLWGYA 554

Query: 68  ILTAAYILNCVPSKSVPTTPYE 3
           + ++AY+LN VP+KS+ TTPYE
Sbjct: 555 LESSAYLLNKVPTKSLSTTPYE 576


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  223 bits (567), Expect = 6e-64
 Identities = 113/201 (56%), Positives = 140/201 (69%), Gaps = 1/201 (0%)
 Frame = -1

Query: 602  ERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPFG-KAKRATHPLEIVHSDICGPMNV 426
            +R++ L ++G L  L    LP CE CL GK  ++PF  K  RA   LE++HSD+CGPM+V
Sbjct: 774  DRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDLCGPMSV 833

Query: 425  RARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGRE 246
            +AR G  YF+TF DDYSRYG +YLL  +SE    FK F AE+E +  + +K LR+D G E
Sbjct: 834  QARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGE 893

Query: 245  YLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDAI 66
            Y+S +F     E+GI  QLS P  PQQNGVAERRN TL+EM RSMM+ ++LPIS WG AI
Sbjct: 894  YISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLWGHAI 953

Query: 65   LTAAYILNCVPSKSVPTTPYE 3
             TAAYILN VPSKSVP TP E
Sbjct: 954  ETAAYILNLVPSKSVPKTPTE 974


>ref|XP_009783587.1| PREDICTED: uncharacterized protein LOC104232161 [Nicotiana
           sylvestris]
          Length = 272

 Score =  205 bits (522), Expect = 3e-63
 Identities = 96/128 (75%), Positives = 114/128 (89%)
 Frame = -1

Query: 434 MNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDR 255
           MN+RARHGA YF+TFIDD++RYG VYL+SH+SEAL CF +F+  VENQ +R +K LRTDR
Sbjct: 1   MNIRARHGAIYFITFIDDFTRYGYVYLISHKSEALSCFVKFMNLVENQLDRKIKALRTDR 60

Query: 254 GREYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWG 75
           GREYLSD+F+QLC+EKGI RQL+IPYTPQQNGVAER+N TLLEM RSMMAQA LPI +WG
Sbjct: 61  GREYLSDEFKQLCDEKGIQRQLTIPYTPQQNGVAERQNRTLLEMVRSMMAQAKLPIIYWG 120

Query: 74  DAILTAAY 51
           DA+LTAA+
Sbjct: 121 DALLTAAF 128


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  208 bits (530), Expect = 6e-59
 Identities = 104/202 (51%), Positives = 142/202 (70%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L ++GLL      +   CE CL GK  + PF G ++RA+  L +VH+D+CGPM+
Sbjct: 449  KKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMS 508

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF DD+SRYG +YL+ H+SE+   FK F  EV+N   + +K LR+DRG 
Sbjct: 509  STARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGG 568

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EY+S +F    ++ GI+ QL+ P TPQ NGV+ERRN TLL+M RSMM+Q++LP+SFWG A
Sbjct: 569  EYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYA 628

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + TAA  LN VPSKSV  TPYE
Sbjct: 629  LETAALTLNRVPSKSVEKTPYE 650


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score =  207 bits (526), Expect = 1e-58
 Identities = 104/202 (51%), Positives = 141/202 (69%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605 QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
           + R+ +L R+GLL      +   CE CL GK  + PF G++++A+  L +VH+D+CGPM+
Sbjct: 334 ERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLVHTDVCGPMS 393

Query: 428 VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
             AR G  YF+TF +D+SRYG VYL+ H+S++   FK F  EV+N   + +K LR+DRG 
Sbjct: 394 STARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLRSDRGG 453

Query: 248 EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
           EYLS +F    +E GI+ QL+ P TPQ NGV+ERRN TLL+M RSMM+Q +LP+SFWG  
Sbjct: 454 EYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLPLSFWGYT 513

Query: 68  ILTAAYILNCVPSKSVPTTPYE 3
           + TAA+ LN VPSKSV  TPYE
Sbjct: 514 LETAAFTLNRVPSKSVDKTPYE 535


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  206 bits (524), Expect = 4e-58
 Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L R+GLL  L   +   CE CL GK  + PF G+++R +  L +VH+D+CGPM+
Sbjct: 925  EKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDVCGPMS 984

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF DD+SRYG VYL+ H+SE+   FK F  EV+N   + +K LR+D G 
Sbjct: 985  STARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSDHGG 1044

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS +F    +  GI+ QL+ P TPQ NGV+ERRN TLL M RSMM+Q NL +SFWG A
Sbjct: 1045 EYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQTNLLLSFWGYA 1104

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + TAA+ LN VPSKSV  TPYE
Sbjct: 1105 LETAAFTLNRVPSKSVDKTPYE 1126


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  202 bits (513), Expect = 4e-58
 Identities = 101/199 (50%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 596 LTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMNVRA 420
           + +L R+GLL      +   CE CL GK  + PF G+++RA+  L +VH+D+CGPM+  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 419 RHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGREYL 240
           R G  YF+ F DD+SRYG VYL+ H+SE+   FK F  EV+N  ++ +K LR+DRG EY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 239 SDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDAILT 60
           S +F    +E GI+ QL+ P TPQ NGV++RRN TLL+M RSMM+Q +LP+SFWG A+ T
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 59  AAYILNCVPSKSVPTTPYE 3
           A + +N VPSKS+  TPYE
Sbjct: 181 AVFTVNRVPSKSMDKTPYE 199


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  206 bits (523), Expect = 6e-58
 Identities = 105/202 (51%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ ++ R+GLL      +   CE CL GK  + PF G+++RA+  L +VH+D+CGPM+
Sbjct: 425  EKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMS 484

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF TF DD+SRYG VYL+ H+SE+   FK F  EV+N   + +K LR+DRG 
Sbjct: 485  STARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGG 544

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS +F    +E GI+ QL+ P TPQ NGV+E RN TLL+M RSMM+Q NL +SFWG A
Sbjct: 545  EYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYA 604

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + T A+ LN VPSKSV  TPYE
Sbjct: 605  LETTAFTLNSVPSKSVDKTPYE 626


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  202 bits (513), Expect = 8e-58
 Identities = 101/199 (50%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 596 LTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMNVRA 420
           + +L R+GLL      +   CE CL GK  + PF G+++RA+  L +VH+D+CGPM+  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 419 RHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGREYL 240
           R G  YF+ F DD+SRYG VYL+ H+SE+   FK F  EV+N  ++ +K LR+DRG EY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 239 SDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDAILT 60
           S +F    +E GI+ QL+ P TPQ NGV++RRN TLL+M RSMM+Q +LP+SFWG A+ T
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 59  AAYILNCVPSKSVPTTPYE 3
           A + +N VPSKS+  TPYE
Sbjct: 181 AVFTVNRVPSKSMDKTPYE 199


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  204 bits (520), Expect = 2e-57
 Identities = 101/202 (50%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L ++G+L      +  VCE CL GK  + PF G  +R    L+I+H+D+CGP  
Sbjct: 424  KKRIAQLQKDGVLESFDLKSDDVCESCLLGKMTKSPFKGSFERGEGLLDIIHTDVCGPFR 483

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
               + G  +++TF DD+SRYG +YL+ H+S+    FK F  EVENQ  R +K+LR+DRG 
Sbjct: 484  STTKDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKNEVENQLGRKIKMLRSDRGG 543

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS +F    +E GI+ QL+ P TPQ NGVAERRN TLL+M RSMM++A+LPI FWG A
Sbjct: 544  EYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDMVRSMMSRASLPIHFWGYA 603

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + TAA+ILN VP+K V  TP+E
Sbjct: 604  LETAAHILNLVPTKKVAKTPHE 625


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  204 bits (519), Expect = 2e-57
 Identities = 100/202 (49%), Positives = 140/202 (69%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L  +G+L      +   CE C+ GK  + PF G+ +RA+  L ++H+D+CGPM+
Sbjct: 537  EKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIHTDVCGPMS 596

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF DDYSRYG +YL+ H+SE+   FK F  EV+NQ  + +K LR+DRG 
Sbjct: 597  TTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGG 656

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            E+LS +F    ++ GI+ QL+ P TPQ NGV+ER N TLL+M R MM+Q++LP+ FWG A
Sbjct: 657  EFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYA 716

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + TAA+ LN VPSKSV  TPYE
Sbjct: 717  LETAAFTLNRVPSKSVDKTPYE 738


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  203 bits (517), Expect = 4e-57
 Identities = 102/202 (50%), Positives = 141/202 (69%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605 QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
           ++R+ +L R+GLL      +   CE CL GK  + PF G+++RA+  L +VH+D+CGPM+
Sbjct: 327 EKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDVCGPMS 386

Query: 428 VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
             AR G  YF+TF D++SRYG VYL+ H+SE+   F+ F  EV+N   + +K LR+DRG 
Sbjct: 387 STARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGG 446

Query: 248 EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
           EYLS ++    +E GI+ QL+ P TPQ N V+ERRN  LL+M RSMM+Q ++P+SFWG A
Sbjct: 447 EYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDMPLSFWGYA 506

Query: 68  ILTAAYILNCVPSKSVPTTPYE 3
           + TAA+ LN VPSKSV  TPYE
Sbjct: 507 LETAAFTLNRVPSKSVDKTPYE 528


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  203 bits (517), Expect = 4e-57
 Identities = 102/202 (50%), Positives = 141/202 (69%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L R+GLL      +   CE CL GK  + PF G+++RA+  L +VH+D+CGPM+
Sbjct: 414  EKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDVCGPMS 473

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF D++SRYG VYL+ H+SE+   F+ F  EV+N   + +K LR+DRG 
Sbjct: 474  STARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGG 533

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS ++    +E GI+ QL+ P TPQ N V+ERRN  LL+M RSMM+Q ++P+SFWG A
Sbjct: 534  EYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDMPLSFWGYA 593

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + TAA+ LN VPSKSV  TPYE
Sbjct: 594  LETAAFTLNRVPSKSVDKTPYE 615


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  200 bits (509), Expect = 3e-56
 Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605 QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
           ++ + +L  +GLL      +   CE CL GK  + PF G ++RA+  L ++H+D+CGPM+
Sbjct: 93  EKHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMS 152

Query: 428 VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
             AR    YF+TF DD+SRYG VYL+ H+S++   FK F  EV+NQ  +++K LR+DRG 
Sbjct: 153 TSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGG 212

Query: 248 EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
           EYLS  F     E GI+ QL+ P TPQ NGV+ERRN TLL+M RSMM+  +LP  FWG A
Sbjct: 213 EYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYA 272

Query: 68  ILTAAYILNCVPSKSVPTTPYE 3
           + T+A++LN  PSKSV  TPYE
Sbjct: 273 LETSAFMLNRCPSKSVEKTPYE 294


>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
          Length = 1354

 Score =  200 bits (509), Expect = 5e-56
 Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 9/210 (4%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPFGKAKRATHPLEIVHSDICGPMNV 426
            +ER+ RL +EG+L  L   +  VC  C+ GK  +     A R+   LEI+H+DICGP+++
Sbjct: 816  RERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTKKGATRSNELLEIIHTDICGPLSI 875

Query: 425  RARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGRE 246
                G  YF+TFIDD SRYG VYL+  +S+A+  F+ F+ EVE Q ++ +K++R+D+G E
Sbjct: 876  PCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGE 935

Query: 245  YLS---------DQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANL 93
            Y             F +  E+ GI  Q ++P TPQQNGVAERRN TL+EM RSMM+ +++
Sbjct: 936  YYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSV 995

Query: 92   PISFWGDAILTAAYILNCVPSKSVPTTPYE 3
            PIS WG+A+ TA YILN VPSK+VP TP+E
Sbjct: 996  PISLWGEALKTAMYILNRVPSKAVPKTPFE 1025


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  199 bits (507), Expect = 7e-56
 Identities = 104/202 (51%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L R+GLL      +    E CL GK  + PF G+++RA+  L +VH+D+CGPM+
Sbjct: 428  EKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDVCGPMS 487

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF DD+S+YG VYL+ H+SE+   FK F  EV+N   + +K LR+DRG 
Sbjct: 488  STARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGG 547

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS +F    +E GI+ QL+ P TPQ N V+ERRN TLL+M RSMM+Q NLP+SF G A
Sbjct: 548  EYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQTNLPLSFSGYA 607

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + T A+ LN VPSKSV  TPYE
Sbjct: 608  LETTAFTLNWVPSKSVDKTPYE 629


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  199 bits (507), Expect = 8e-56
 Identities = 104/202 (51%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPF-GKAKRATHPLEIVHSDICGPMN 429
            ++R+ +L R+GLL      +    E CL GK  + PF G+++RA+  L +VH+D+CGPM+
Sbjct: 501  EKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDVCGPMS 560

Query: 428  VRARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGR 249
              AR G  YF+TF DD+S+YG VYL+ H+SE+   FK F  EV+N   + +K LR+DRG 
Sbjct: 561  STARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGG 620

Query: 248  EYLSDQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDA 69
            EYLS +F    +E GI+ QL+ P TPQ N V+ERRN TLL+M RSMM+Q NLP+SF G A
Sbjct: 621  EYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQTNLPLSFSGYA 680

Query: 68   ILTAAYILNCVPSKSVPTTPYE 3
            + T A+ LN VPSKSV  TPYE
Sbjct: 681  LETTAFTLNWVPSKSVDKTPYE 702


>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
          Length = 1180

 Score =  198 bits (504), Expect = 2e-55
 Identities = 100/210 (47%), Positives = 138/210 (65%), Gaps = 9/210 (4%)
 Frame = -1

Query: 605  QERLTRLAREGLLGQLAKVNLPVCEPCLAGKACRKPFGKAKRATHPLEIVHSDICGPMNV 426
            +E + RL +EG+L  L   +  VC  C+ GK  +     A R+   LEI+H+DICGP++V
Sbjct: 418  REXIERLVKEGILQNLDFTDFHVCVDCIKGKQTKHTKKGATRSNELLEIIHTDICGPLSV 477

Query: 425  RARHGASYFLTFIDDYSRYGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGRE 246
                G  YF+TFIDD SRYG VYL+  +S+A+  F+ F+ EVE Q ++ +K++R+DRG E
Sbjct: 478  PCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDRGGE 537

Query: 245  YLS---------DQFRQLCEEKGIIRQLSIPYTPQQNGVAERRNMTLLEMARSMMAQANL 93
            Y             F +  E+ GI  Q ++P TPQQNGVAERRN TL+EM RSMM+ +++
Sbjct: 538  YYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSV 597

Query: 92   PISFWGDAILTAAYILNCVPSKSVPTTPYE 3
            PIS WG+ + TA YILN VPSK+VP TP+E
Sbjct: 598  PISLWGEXLKTAMYILNRVPSKAVPKTPFE 627


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  194 bits (494), Expect = 5e-54
 Identities = 99/184 (53%), Positives = 124/184 (67%), Gaps = 3/184 (1%)
 Frame = -1

Query: 545  LPVCEPCLAGKACRK--PFGKAKRATHPLEIVHSDICGPMNVRARHGASYFLTFIDDYSR 372
            L +CE C+ GK  RK  P GK+ RAT  LE+VH+D+CGPM + +  G+ YFL F DDYSR
Sbjct: 475  LDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSR 534

Query: 371  YGSVYLLSHRSEALVCFKRFLAEVENQRERNLKVLRTDRGREYLSDQFRQLCEEKGIIRQ 192
            +  VY L  +SE    FK+F A VENQ    +K LRTDRG E+LS+ F   CEE GI R+
Sbjct: 535  FSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRE 594

Query: 191  LSIPYTPQQNGVAERRNMTLLEMARSMMAQANLPISFWGDAILTAAYILNCVPSKSV-PT 15
            L+ PYTP+QNGVAER+N T++EMARS +    LP  FWG+A+ T  Y LN  P+K V  T
Sbjct: 595  LTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAVATVVYFLNISPTKDVWNT 654

Query: 14   TPYE 3
            TP E
Sbjct: 655  TPLE 658