BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00024977
         (1137 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposo...   435   e-142
gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposo...   436   e-141
gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   394   e-134
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               419   e-133
emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group]         393   e-131
ref|XP_014629594.1| PREDICTED: uncharacterized protein LOC106798...   397   e-131
gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subc...   405   e-131
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   407   e-129
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-...   395   e-129
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         408   e-128
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc...   394   e-128
gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subc...   390   e-128
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   407   e-128
gb|AAW56912.1| hypothetical protein [Oryza sativa Japonica Group]     398   e-128
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         407   e-128
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...   406   e-128
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   406   e-128
emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]        405   e-128
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group...   405   e-128
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]     405   e-128

>gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 900

 Score =  435 bits (1119), Expect = e-142
 Identities = 200/337 (59%), Positives = 265/337 (78%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            PEG  V G+E KVC+L+KSLYGLKQAP QWHEKFD V++++GF  +  D+CVY K ++D 
Sbjct: 509  PEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADRCVYTKSMNDD 568

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
            CVI+CLYVDD+LIFG+   ++  TK FL+++FDMKD+G   VILG+K++R  +SI LSQ 
Sbjct: 569  CVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASVILGVKVVRKGDSILLSQG 628

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+E+LL KF+Y     V+TPYD + +L++NKG S++Q +Y+QIIGSLLHLMN +RPDIA
Sbjct: 629  HYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIA 688

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            YAV RL+RYTH PN  HW+AL RL +YL+GT+DY I ++GFP VLEGYSDANWI+DS+ET
Sbjct: 689  YAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDET 748

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            KSTSGYVFTL GGAI+W+SV+Q++I+RSTME+E +AL+   TEAEWL++FL +       
Sbjct: 749  KSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALEMTSTEAEWLRNFLENIPLGMKP 808

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEKRRHLTVRHKSIR 1011
                  HCD+Q AIA AK+K+YN K RH+ +RH  ++
Sbjct: 809  TPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVK 845


>gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1012

 Score =  436 bits (1120), Expect = e-141
 Identities = 201/337 (59%), Positives = 265/337 (78%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            PEG  V G+E KVC+L+KSLYGLKQAP QWHEKFD V++++GF  +  DKCVY K ++D 
Sbjct: 621  PEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADKCVYTKSMNDD 680

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
            CVI+CLYVDD+LIFG+   ++  TK FL+++FDMKD+G   VILG+K++R  +SI LSQ 
Sbjct: 681  CVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASVILGVKVVRKGDSILLSQG 740

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+E+LL KF+Y     V+TPYD + +L++NKG S++Q +Y+QIIGSLLHLMN +RPDIA
Sbjct: 741  HYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIA 800

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            YAV RL+RYTH PN  HW+AL RL +YL+GT+DY I ++GFP VLEGYSDANWI+DS+ET
Sbjct: 801  YAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDET 860

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            KSTSGYVFTL GGAI+W+SV+Q++I+RSTME+E +AL+   TEAEWL++FL +       
Sbjct: 861  KSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALEMTSTEAEWLRNFLANIPLGMKP 920

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEKRRHLTVRHKSIR 1011
                  HCD+Q AIA AK+K+YN K RH+ +RH  ++
Sbjct: 921  TPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVK 957


>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 304

 Score =  394 bits (1012), Expect = e-134
 Identities = 192/275 (69%), Positives = 227/275 (82%)
 Frame = +1

Query: 190  LCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYI 369
            LCLYVDDILIFGSN+HVIND K FLS++F+MKDLG VDVILGIK+I+N + I L+QSHYI
Sbjct: 1    LCLYVDDILIFGSNLHVINDVKSFLSSNFEMKDLGLVDVILGIKLIKNHDGIVLTQSHYI 60

Query: 370  EKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAV 549
            EK+L KFNY  V PVSTP+DPS KL+KN G SVS  KYSQIIGSLLHL N +RPDIAYAV
Sbjct: 61   EKILKKFNYFDVKPVSTPFDPSIKLKKNIGESVSPLKYSQIIGSLLHLSNFSRPDIAYAV 120

Query: 550  GRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKST 729
            GRL RYTH+P+ SHW ALERLF+YLKGT++Y I++  +P V+EG+ DANWI+DS+ETKST
Sbjct: 121  GRLGRYTHNPDHSHWLALERLFRYLKGTVNYGIHYACYPVVIEGFCDANWISDSDETKST 180

Query: 730  SGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXXXXX 909
            SGYVFTLAGGA++WKS KQT+ISRSTMEAE+IALD A +EAE+LK+ L D          
Sbjct: 181  SGYVFTLAGGAVAWKSAKQTIISRSTMEAEIIALDTASSEAEFLKNLLYDLPLLNKPIPP 240

Query: 910  XXXHCDSQVAIARAKSKNYNEKRRHLTVRHKSIRH 1014
               HCDSQVAI +  SKN+NEKRRHL +RHK IR+
Sbjct: 241  ISMHCDSQVAIIKVTSKNFNEKRRHLRIRHKFIRN 275


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  419 bits (1078), Expect = e-133
 Identities = 202/337 (59%), Positives = 256/337 (75%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            PEG VV G+++KVCKL+KSLYGLKQAP QWHEK D+V++  GF  N  DKCVY +  +  
Sbjct: 899  PEGCVVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLLCEGFSTNDADKCVYSRSENGE 958

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VI+CLYVDD+LIFG+   ++  TK FL + F+MKD+G   VILG+KIIR  +SI LSQ 
Sbjct: 959  YVIICLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQE 1018

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
             Y EKLL KF Y     VSTPYD + KL+KN+G S+SQ +Y+QIIGSLLHLM+ +RPDIA
Sbjct: 1019 KYTEKLLKKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRPDIA 1078

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            YAVGRL+R T  P+  HW+AL RL KYL+GT+DYAI ++GFP VLEGYSDANWI+DS+ET
Sbjct: 1079 YAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDET 1138

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            KSTSGYVFTL GGA++W+S +QT+I+RSTME+E +AL+ A +EAEWLK+FL +       
Sbjct: 1139 KSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMKP 1198

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEKRRHLTVRHKSIR 1011
                  HCD Q AIA AK+K+YN K RH+ +RH  ++
Sbjct: 1199 TPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVK 1235


>emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group]
          Length = 478

 Score =  393 bits (1010), Expect = e-131
 Identities = 190/338 (56%), Positives = 245/338 (72%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 108  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHDGGE 167

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 168  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 227

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  L KNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 228  HYVEKILNRFGYIDSKPSPTPYDPSLLLLKNKRIAKNQLEYSQIIGSLMYLASTTRPDIS 287

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLK T++  +++TG+P +LE YSD+NWI+D +E 
Sbjct: 288  FAVSKLSRFTSNPRDDHWRALERVMRYLKRTMELGLHYTGYPAILEEYSDSNWISDVDEI 347

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL  LD +  EAEWL+  L D       
Sbjct: 348  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTGLDTSTVEAEWLRDLLMDLPIVEKP 407

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS++
Sbjct: 408  VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVK 445


>ref|XP_014629594.1| PREDICTED: uncharacterized protein LOC106798148 [Glycine max]
          Length = 612

 Score =  397 bits (1019), Expect = e-131
 Identities = 192/284 (67%), Positives = 225/284 (79%), Gaps = 1/284 (0%)
 Frame = +1

Query: 76   APMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT-CVILCLYVDDILIFGSNIHVINDT 252
            +P QWHEKFD V++S GF IN  DKCVY+K  DD  CVILCLYVDDILIFGSN+  IND 
Sbjct: 329  SPKQWHEKFDQVVLSYGFQINNTDKCVYVKQFDDNGCVILCLYVDDILIFGSNMQFINDV 388

Query: 253  KKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDP 432
            K FLS +FDMKDLGPVDVILGIK+I+  + + L+QSHY+EKLL KFNY  V PVSTPYD 
Sbjct: 389  KSFLSRNFDMKDLGPVDVILGIKLIKKNDGMILTQSHYVEKLLKKFNYFDVKPVSTPYDS 448

Query: 433  SFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERL 612
            S KL+KN    +S HKYSQIIGSLLH  N +RPDIAYAVGRL RYT++P+ SHW ALER+
Sbjct: 449  SIKLKKNLDKGISSHKYSQIIGSLLHFTNFSRPDIAYAVGRLGRYTNNPDHSHWIALERV 508

Query: 613  FKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKSVKQTV 792
            F+YLKGTI+Y I++T FP V+EG+SDANWI+DS+ETKSTSGYVFTLAGGA+SWKS KQT+
Sbjct: 509  FRYLKGTINYGIHYTCFPAVIEGFSDANWISDSDETKSTSGYVFTLAGGAVSWKSAKQTI 568

Query: 793  ISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXXXXXXXXHC 924
            IS  TMEAE+IALD A +EAE+LK+ L D             HC
Sbjct: 569  ISHFTMEAEIIALDTATSEAEFLKNLLCDLPLLNKPIPPIPIHC 612


>gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 923

 Score =  405 bits (1042), Expect = e-131
 Identities = 200/356 (56%), Positives = 253/356 (71%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 570  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 629

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 630  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 689

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 690  HYVEKMLNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 749

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGTI+  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 750  FAVSKLSRFTSNPGDDHWRALERVMRYLKGTIELGLHYTGYPAVLEGYSDSNWISDVDEI 809

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 810  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATDEAEWLRDLLMDLPIVEKP 869

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEKRRHLTVRHKSIRHXTLRIRSQRDWRVSKFYN 1068
                  +CD+Q  I +  S   N          KS RH   R+++ R  R  + YN
Sbjct: 870  VLAILMNCDNQTVIVKVNSSKDN---------IKSSRHVKRRLKTVRKLRKLQSYN 916


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  407 bits (1045), Expect = e-129
 Identities = 197/338 (58%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 714  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 773

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 774  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 833

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 834  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 893

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 894  FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 953

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 954  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1013

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1014 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1051


>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 713

 Score =  395 bits (1014), Expect = e-129
 Identities = 187/311 (60%), Positives = 236/311 (75%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 314  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGGGE 373

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 374  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 433

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 434  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 493

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 494  FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 553

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 554  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 613

Query: 901  XXXXXXHCDSQ 933
                  +CD+Q
Sbjct: 614  VPAILMNCDNQ 624


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  408 bits (1048), Expect = e-128
 Identities = 198/338 (58%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  +IS GF +N+ DKCVY +     
Sbjct: 921  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGE 980

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 981  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1041 HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1100

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++   ++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1101 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEI 1160

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1161 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1220

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1221 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1258


>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 764

 Score =  394 bits (1013), Expect = e-128
 Identities = 187/311 (60%), Positives = 236/311 (75%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 345  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 404

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 405  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 464

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 465  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 524

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 525  FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 584

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 585  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 644

Query: 901  XXXXXXHCDSQ 933
                  +CD+Q
Sbjct: 645  VPAILMNCDNQ 655


>gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 622

 Score =  390 bits (1001), Expect = e-128
 Identities = 186/311 (59%), Positives = 235/311 (75%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP Q HEKFD  + S GF +N+ DKCVY +   D 
Sbjct: 216  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQCHEKFDKTLTSAGFAVNEADKCVYYRHGGDE 275

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 276  GVILCLYVDDILIFGTNLEVINEAKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 335

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 336  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 395

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 396  FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 455

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RS MEAEL ALD A  EAEWL+  L D       
Sbjct: 456  KATSGYVFTLGGGAVSWRSCKQTILTRSIMEAELTALDTATVEAEWLRDLLMDLPVVEKP 515

Query: 901  XXXXXXHCDSQ 933
                  +CD+Q
Sbjct: 516  VPAILMNCDNQ 526


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  407 bits (1045), Expect = e-128
 Identities = 197/338 (58%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 921  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 980

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 981  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1041 HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1100

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1101 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 1160

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1161 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1220

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1221 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1258


>gb|AAW56912.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 913

 Score =  398 bits (1022), Expect = e-128
 Identities = 193/338 (57%), Positives = 247/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKF+  + S GF +N+ DKCVY +     
Sbjct: 188  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFNKTLTSAGFAVNEADKCVYYRHGGGE 247

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 248  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 307

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKN+  + +Q +YSQIIGSL++L +  RPDI+
Sbjct: 308  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNRRIARNQLEYSQIIGSLIYLASAIRPDIS 367

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+  YLKGT++  ++++G+P VLEGYSD+NWI+D +E 
Sbjct: 368  FAVSKLSRFTSNPGDDHWRALERVMHYLKGTMELGLHYSGYPAVLEGYSDSNWISDVDEI 427

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 428  KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPIVEKP 487

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 488  VLAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 525


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  407 bits (1045), Expect = e-128
 Identities = 197/338 (58%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 921  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 980

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 981  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1041 HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1100

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1101 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 1160

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1161 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1220

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1221 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1258


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549882|gb|ABA92679.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1302

 Score =  406 bits (1044), Expect = e-128
 Identities = 197/338 (58%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 921  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSVGFAVNEADKCVYYRHGGGE 980

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 981  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1041 HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1100

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1101 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 1160

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1161 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1220

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1221 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1258


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  406 bits (1044), Expect = e-128
 Identities = 196/338 (57%), Positives = 249/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFV+ G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 921  PDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 980

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 981  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1041 HYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1100

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1101 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 1160

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1161 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1220

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1221 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1258


>emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
          Length = 1264

 Score =  405 bits (1042), Expect = e-128
 Identities = 196/338 (57%), Positives = 248/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 883  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 942

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  D+IL IK+IR +N I+L QS
Sbjct: 943  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADIILNIKLIRGENGITLLQS 1002

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 1003 HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1062

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT+   +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1063 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVGLGVHYTGYPAVLEGYSDSNWISDVDEI 1122

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1123 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1182

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1183 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1220


>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711758|gb|ABF99553.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1224

 Score =  405 bits (1040), Expect = e-128
 Identities = 195/338 (57%), Positives = 250/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD ++ S GF +N+ DKCVY +     
Sbjct: 843  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKILTSAGFAVNEADKCVYYRHGGGE 902

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 903  GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 962

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  L KNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 963  HYVEKILNRFGYIDSKPSPTPYDPSLLLHKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1022

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D ++ 
Sbjct: 1023 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDKI 1082

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1083 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1142

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q+ I +  S   N K  RH+  R KS+R
Sbjct: 1143 VPAILMNCDNQMVIVKVNSSKDNMKSSRHVKRRLKSVR 1180


>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1229

 Score =  405 bits (1040), Expect = e-128
 Identities = 196/338 (57%), Positives = 248/338 (73%), Gaps = 1/338 (0%)
 Frame = +1

Query: 1    PEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDT 180
            P+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S GF +N+ DKCVY +     
Sbjct: 848  PDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGE 907

Query: 181  CVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQS 360
             VILCLYVDDILIFG+N+ VIN+ K FL  +FDMKDLG  DVIL IK+IR +N I+L QS
Sbjct: 908  GVILCLYVDDILIFGTNLEVINEVKSFLPQNFDMKDLGVADVILNIKLIRGENGITLLQS 967

Query: 361  HYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIA 540
            HY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI+
Sbjct: 968  HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDIS 1027

Query: 541  YAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEET 720
            +AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E 
Sbjct: 1028 FAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEI 1087

Query: 721  KSTSGYVFTLAGGAISWKSVKQTVISRSTMEAELIALDAACTEAEWLKSFLNDXXXXXXX 900
            K+TSGYVFTL GGA+SW+S KQT+++RSTMEAEL ALD A  EAEWL+  L D       
Sbjct: 1088 KATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKP 1147

Query: 901  XXXXXXHCDSQVAIARAKSKNYNEK-RRHLTVRHKSIR 1011
                  +CD+Q  I +  S   N K  RH+  R KS+R
Sbjct: 1148 VPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1185