BLASTX nr result
ID: Rehmannia28_contig00024637
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00024637
(5307 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) ... 2200 0.0
gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascu... 2189 0.0
ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia ... 2187 0.0
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 2187 0.0
gb|ALO62113.1| RNA polymerase beta subunit (chloroplast) [Cresce... 2185 0.0
gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium... 2175 0.0
ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [... 2172 0.0
ref|YP_009239189.1| RNA polymerase beta'' subunit (chloroplast) ... 2153 0.0
gb|AKZ23936.1| RNA polymerase beta'' subunit (plastid) [Verbena ... 2152 0.0
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ... 2152 0.0
ref|YP_009183582.1| RNA polymerase beta subunit (chloroplast) [S... 2143 0.0
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans... 2140 0.0
ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) ... 2135 0.0
gb|AKZ23934.1| RNA polymerase beta'' subunit (plastid) [Penstemo... 2130 0.0
gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Peri... 2128 0.0
ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) ... 2128 0.0
gb|AKZ23933.1| RNA polymerase beta'' subunit (plastid) [Penstemo... 2127 0.0
ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [H... 2118 0.0
ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana s... 2114 0.0
ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea s... 2114 0.0
>ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
(chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 2200 bits (5701), Expect = 0.0
Identities = 1108/1185 (93%), Positives = 1120/1185 (94%), Gaps = 3/1185 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP+NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGP SS VSLSLHKDQDQMSA SRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR
Sbjct: 481 LLGGPCRSSPVSLSLHKDQDQMSAQSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDY DLSRII TG CNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMPPSGIS
Sbjct: 541 IPDYLDLSRIIYTGLCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPPSGIS 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKQNCKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITLATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWD DKKSSSSQEARASFVEIRANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LNWDPDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSTISYIGKRNDPSGSGLFSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CTN NPFSS Y KARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN VK
Sbjct: 901 SDCTNTNPFSSSYCKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNGVK 960
Query: 4642 YHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKE 4821
YHNVIKESI+ITKDPLIPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYLQLDNLK+
Sbjct: 961 YHNVIKESIKITKDPLIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYLQLDNLKQ 1020
Query: 4822 TFQVIK---YYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRC 4992
TFQVI YYL+DEN KIYNPD CSNIIFNLNWYF+H NYCQETST+MSLGQFICEN C
Sbjct: 1021 TFQVINLSTYYLMDENAKIYNPDPCSNIIFNLNWYFLHPNYCQETSTLMSLGQFICENIC 1080
Query: 4993 IAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSR 5172
IA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKSR
Sbjct: 1081 IAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSR 1140
Query: 5173 SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 1185
>gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascum thapsus]
Length = 1389
Score = 2189 bits (5673), Expect = 0.0
Identities = 1101/1184 (92%), Positives = 1118/1184 (94%), Gaps = 2/1184 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFN+DLVHPTRTRHGHPAFLCSI+LYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRS SNLSGT DQSRQKFFTSDFSGKKE R
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQMSAHSRSVKRRSLSNLSGTADQSRQKFFTSDFSGKKEGR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IP YSDLS IICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENE MPPS IS
Sbjct: 541 IPYYSDLSPIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENEQMPPSSIS 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY DDPRYRRKSSGITKYGTLEM+SIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMNSIVKKEDLIEYRGGKEFRPKY 660
Query: 3742 --QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI
Sbjct: 661 QMQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPG GKQ IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VRPVVTYEITDGI LATLFPPDLL E DNV LRVVNYILYGNGKPIRGISDTNIQLVRTC
Sbjct: 781 VRPVVTYEITDGINLATLFPPDLLQERDNVNLRVVNYILYGNGKPIRGISDTNIQLVRTC 840
Query: 4276 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 4455
LVLNWDQDKKSSSSQE RASFVEI ANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEVRASFVEITANGLIRHFLRIDLVKSPISYIGKRNDPSGSGLRSD 900
Query: 4456 XXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 4635
CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 4636 VKYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNL 4815
VKYHNVIKESI+ITKDP IPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNL
Sbjct: 961 VKYHNVIKESIKITKDPRIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNL 1020
Query: 4816 KETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCI 4995
K+ FQVIKYYL+DENEKIY PD CSNIIFNLNWYF+H NYCQETSTIMSLGQFICEN CI
Sbjct: 1021 KQIFQVIKYYLMDENEKIYKPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQFICENICI 1080
Query: 4996 AQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRS 5175
A+N P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKSRS
Sbjct: 1081 AKNIPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRS 1140
Query: 5176 GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
GDITQGLPKVEQVLEVRSIDSISMNLEKR++GWN+RIT+ILGMP
Sbjct: 1141 GDITQGLPKVEQVLEVRSIDSISMNLEKRIQGWNDRITKILGMP 1184
>ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia takesimensis]
gi|744673729|gb|AJD00714.1| RNA polymerase beta'' subunit
[Scrophularia takesimensis]
Length = 1389
Score = 2187 bits (5667), Expect = 0.0
Identities = 1100/1184 (92%), Positives = 1118/1184 (94%), Gaps = 2/1184 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAE+ANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAEQANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI+HNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDIQHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQ--MSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKE 3375
LLGGP SSLVSLSLHKDQDQ MSAHSRSVKRRS SNLSGT DQSRQKFFTSDF GKKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQDQMSAHSRSVKRRSLSNLSGTADQSRQKFFTSDFWGKKE 540
Query: 3376 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 3555
DRIP YSDLSRI+CTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMPPS
Sbjct: 541 DRIPYYSDLSRILCTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPPSS 600
Query: 3556 ISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 3735
ISIEIPINGIFRRNSI AY DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP
Sbjct: 601 ISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 660
Query: 3736 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIG DTQITLNIRSRVGGLVRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGGDTQITLNIRSRVGGLVRVERKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPG GKQ IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VRPVVTYEITDGI LATLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDT IQLVRTC
Sbjct: 781 VRPVVTYEITDGINLATLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDTTIQLVRTC 840
Query: 4276 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 4455
LVLNWDQDKKSSSSQE RASFVEI ANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEVRASFVEITANGLIRHFLRIDLVKSPISYIGKRNDPSDSGLRSD 900
Query: 4456 XXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 4635
CTNINPFSSIYSKARI+QPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIRQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 4636 VKYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNL 4815
VKYHNVIKESI+ITKDP IPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYLQLDNL
Sbjct: 961 VKYHNVIKESIKITKDPQIPIKNSLGPLGTAFLIGNVYSFYHLITHNQILVNNYLQLDNL 1020
Query: 4816 KETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCI 4995
K+ FQVIKYYLIDENEKIY PD CSNIIFNLNWYF+H NYCQETSTIMSLGQFICEN CI
Sbjct: 1021 KQIFQVIKYYLIDENEKIYKPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQFICENICI 1080
Query: 4996 AQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRS 5175
A+N P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKSRS
Sbjct: 1081 AKNIPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRS 1140
Query: 5176 GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
GDITQGLPKVEQVLEVRSIDSISMNLEKRV+GWN+RIT+ILGMP
Sbjct: 1141 GDITQGLPKVEQVLEVRSIDSISMNLEKRVQGWNDRITKILGMP 1184
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 2187 bits (5667), Expect = 0.0
Identities = 1100/1188 (92%), Positives = 1122/1188 (94%), Gaps = 6/1188 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAER NLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERVNLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDF--SGKKE 3375
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSGTN QSR+KFFTSDF GKKE
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGTNGQSRKKFFTSDFLGKGKKE 540
Query: 3376 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 3555
DRIPDYSDLSRIICTGRCN +DPTILYQNSDLFSKRRRNRFIIPLQ +QERENEL PPS
Sbjct: 541 DRIPDYSDLSRIICTGRCNFVDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELTPPSD 600
Query: 3556 ISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 3735
ISIEIPINGIFRRNSI AY+DDPRYRRKSSGITK+GTLEMHSIVKKEDLIEYRGGKEFRP
Sbjct: 601 ISIEIPINGIFRRNSILAYLDDPRYRRKSSGITKHGTLEMHSIVKKEDLIEYRGGKEFRP 660
Query: 3736 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVE+KKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVAGLVRVEKKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VRPVVTYEITDGITL TLFPPD L E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTC
Sbjct: 781 VRPVVTYEITDGITLGTLFPPDPLQERDNVKLRVVNYILYGNGKPIRGISDTNIQLVRTC 840
Query: 4276 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 4455
LVLNWDQDKKSSSSQEARASFVEIRA+GLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEARASFVEIRASGLIRHFLRIDLLKSTISYIGKRNDPSGSGLLLD 900
Query: 4456 XXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 4635
CTNINPFSSIYSKARIQQPLNQNQRTIHT LNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIQQPLNQNQRTIHTFLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 4636 VKYH--NVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD 4809
VKYH NVIKESIQITKDP+IPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYLQLD
Sbjct: 961 VKYHNYNVIKESIQITKDPVIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYLQLD 1020
Query: 4810 NLKETFQVIK--YYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICE 4983
NLK+TFQVIK YYLIDENEKIYNPDS SNIIFNLNWYF+H NYCQETSTIMSLGQFICE
Sbjct: 1021 NLKQTFQVIKFQYYLIDENEKIYNPDSYSNIIFNLNWYFLHPNYCQETSTIMSLGQFICE 1080
Query: 4984 NRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYE 5163
N CIA+NAP+LKSGQVILVQVDSVV+RSAKPYLATPGATVHGHYGEILY+GDTLITFIYE
Sbjct: 1081 NICIAKNAPHLKSGQVILVQVDSVVMRSAKPYLATPGATVHGHYGEILYEGDTLITFIYE 1140
Query: 5164 KSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
KSRSGDITQGLPKVEQVLEVRSI SISMNLEKR+EGW ERI RILGMP
Sbjct: 1141 KSRSGDITQGLPKVEQVLEVRSIASISMNLEKRIEGWGERIKRILGMP 1188
>gb|ALO62113.1| RNA polymerase beta subunit (chloroplast) [Crescentia cujete]
Length = 1391
Score = 2185 bits (5663), Expect = 0.0
Identities = 1098/1186 (92%), Positives = 1118/1186 (94%), Gaps = 4/1186 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSK+WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKKWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAE+RAGTSTLNFKEKVRKHIYSDS GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEMRAGTSTLNFKEKVRKHIYSDSAGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRR----STSNLSGTNDQSRQKFFTSDFSGK 3369
LLG P SSLVSLSLHKDQDQMSAHSRSVKR STSNLSG NDQSRQKFFTSDFSGK
Sbjct: 481 LLGEPCRSSLVSLSLHKDQDQMSAHSRSVKRSVKRGSTSNLSGANDQSRQKFFTSDFSGK 540
Query: 3370 KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPP 3549
KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMP
Sbjct: 541 KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPS 600
Query: 3550 SGISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEF 3729
SGISIEIPINGIFRR SI AY DDPRYRRKSSGIT+YGTLEMHSI+KKEDLIE+RGGKEF
Sbjct: 601 SGISIEIPINGIFRRKSILAYFDDPRYRRKSSGITQYGTLEMHSILKKEDLIEHRGGKEF 660
Query: 3730 RPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK 3909
R KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK
Sbjct: 661 RAKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK 720
Query: 3910 RIELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYF 4089
RIELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYF
Sbjct: 721 RIELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYF 780
Query: 4090 VLVRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVR 4269
VLVRPV+TYEITDGIT ATLFP DLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVR
Sbjct: 781 VLVRPVITYEITDGITFATLFPTDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQLVR 840
Query: 4270 TCLVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXX 4449
TCLVLNWDQDKKSSSSQEARASFVEI+AN LIRHFLRIDLV+S ISYIGKRND
Sbjct: 841 TCLVLNWDQDKKSSSSQEARASFVEIKANDLIRHFLRIDLVQSTISYIGKRNDLSGSGLL 900
Query: 4450 XXXXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF 4629
CTNINPFSSIYSK RIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF
Sbjct: 901 SDNGSACTNINPFSSIYSKRRIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF 960
Query: 4630 NDVKYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD 4809
NDVKYHNVIKESI+ITKDPLIPIKNSLGPLGTAFLI NVYSFYHL+THNQILVNNYLQLD
Sbjct: 961 NDVKYHNVIKESIKITKDPLIPIKNSLGPLGTAFLIANVYSFYHLLTHNQILVNNYLQLD 1020
Query: 4810 NLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENR 4989
N K+TFQVIKYYL+DENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMSLGQFICEN
Sbjct: 1021 NFKQTFQVIKYYLMDENEKIYNPDPCSNIIFNLNWYFLHSNYCQETSTIMSLGQFICENI 1080
Query: 4990 CIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKS 5169
CIA+NAP+LKSGQVILV VDSVVIRSAK YLATPGATVHGHYGEILY+GDTLITFIYEKS
Sbjct: 1081 CIAKNAPHLKSGQVILVHVDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLITFIYEKS 1140
Query: 5170 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
RSGDITQGLPKVEQVLEVRS+DSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 RSGDITQGLPKVEQVLEVRSVDSISMNLEKRVEGWNERITRILGMP 1186
>gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium canadense]
Length = 1378
Score = 2175 bits (5635), Expect = 0.0
Identities = 1090/1186 (91%), Positives = 1111/1186 (93%), Gaps = 4/1186 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMG RCIATRNQD+G+GLVNRFITFRAQPIAIRTPFTCR+ASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGARCIATRNQDVGIGLVNRFITFRAQPIAIRTPFTCRNASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHP RTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPIRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAG STLNFKEKVRKHIYSDS GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGISTLNFKEKVRKHIYSDSGGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGPR SSLVSLS+HKDQDQM AHSRSVKRRSTSNLSGT DQSR+KFFTSDFSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMGAHSRSVKRRSTSNLSGTKDQSREKFFTSDFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDYSDLSRIICTGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +QE ENEL P S IS
Sbjct: 541 IPDYSDLSRIICTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQECENELTPLSDIS 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY+DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEY+GGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYQGGKEFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIGVDTQITLNIRSR GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSFIMVRNNSIIGVDTQITLNIRSRAAGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKRGKNWIYVQRITPSKKKYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITL TLFPPD L E DNV+LR VNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDPLQERDNVKLRAVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWDQDKKSS SQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDKKSSFSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSVSGLLSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CTNINPFSSIYSKA IQQ LNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 SDCTNINPFSSIYSKASIQQSLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 960
Query: 4642 YHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKE 4821
YHNVIKESI+ITKDPLIPI+N LGPLGTAFLI NVYSFYHLITHNQILVNNYLQLDNLK+
Sbjct: 961 YHNVIKESIKITKDPLIPIENLLGPLGTAFLITNVYSFYHLITHNQILVNNYLQLDNLKQ 1020
Query: 4822 TFQVI----KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENR 4989
TFQVI KYYLIDENEKIYNP CSNII NLNWYF H NYCQETSTIMSLGQF+CEN
Sbjct: 1021 TFQVILIKFKYYLIDENEKIYNPGPCSNIILNLNWYFFHANYCQETSTIMSLGQFVCENI 1080
Query: 4990 CIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKS 5169
CIAQNAP+LKSGQ+ILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKS
Sbjct: 1081 CIAQNAPHLKSGQIILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKS 1140
Query: 5170 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
RSGDITQGLPKVEQV+EVRSI SISMNLEKR+EGWNERITRILGMP
Sbjct: 1141 RSGDITQGLPKVEQVVEVRSIHSISMNLEKRIEGWNERITRILGMP 1186
>ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [Premna microphylla]
gi|748013894|gb|AJE28364.1| RNA polymerase beta' subunit
(chloroplast) [Premna microphylla]
Length = 1394
Score = 2172 bits (5629), Expect = 0.0
Identities = 1091/1188 (91%), Positives = 1117/1188 (94%), Gaps = 6/1188 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LG+DDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGVDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFIT RAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITLRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDI+HNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIQHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWS DVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSADVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGPR SSLVSLS+HKDQDQMSAHSRSVKRR TSNLSGTNDQSR+KFFTSDFSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKRRPTSNLSGTNDQSREKFFTSDFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDYSDLSRIICTGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +QERENE P S IS
Sbjct: 541 IPDYSDLSRIICTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQERENERTPLSDIS 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY+DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEE HILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEAHILPGSSSIMVRNNSIIGVDTQITLNIRSRVTGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPGETDKISRHSGVLIPPGT KQ IYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTEKQNSKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGIT TLFPPDLL E DNV+LRVVN+ LYGNGKPI+GISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITFGTLFPPDLLQERDNVKLRVVNFFLYGNGKPIQGISDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWDQDKKSSSSQEARASFVEIRANGL+RHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLVRHFLRIDLMKSTISYIGKRNDPSGSGLLSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CTNINPFSS+ KARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 LDCTNINPFSSVSPKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 960
Query: 4642 Y--HNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNL 4815
Y HNVIKESI+ITKDP+IPIKNSLGPLG AFLI NVYSFYHLITHNQILVNNYLQLDN
Sbjct: 961 YHNHNVIKESIKITKDPVIPIKNSLGPLGAAFLIANVYSFYHLITHNQILVNNYLQLDNF 1020
Query: 4816 KETFQVI--KYYLIDENEKIYNPDSCSNII--FNLNWYFIHLNYCQETSTIMSLGQFICE 4983
K+TFQVI KYYLI+ENEKIYNPD CSNII FNLNWYF++ NYCQETSTIMSLGQFICE
Sbjct: 1021 KQTFQVIKFKYYLIEENEKIYNPDPCSNIIFNFNLNWYFLYPNYCQETSTIMSLGQFICE 1080
Query: 4984 NRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYE 5163
N CIA+NAP+LKSGQVILVQVDSVVIRSAK YLATPGATVHGHYGEILY+GDTLITFIYE
Sbjct: 1081 NICIAKNAPHLKSGQVILVQVDSVVIRSAKTYLATPGATVHGHYGEILYEGDTLITFIYE 1140
Query: 5164 KSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
KSRSGDITQGLPKVEQVLEVRS+DSISMNLEKR+EGWNERITRILGMP
Sbjct: 1141 KSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNERITRILGMP 1188
>ref|YP_009239189.1| RNA polymerase beta'' subunit (chloroplast) [Pedicularis ishidoyana]
gi|1001185275|gb|AML80477.1| RNA polymerase beta''
subunit (chloroplast) [Pedicularis ishidoyana]
Length = 1351
Score = 2153 bits (5579), Expect = 0.0
Identities = 1085/1180 (91%), Positives = 1106/1180 (93%), Gaps = 2/1180 (0%)
Frame = +1
Query: 1774 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1953
MAERANLVFHNKVIDG AMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGIAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1954 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2133
DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2134 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2313
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2314 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 2493
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPR+GMMPERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRDGMMPERIL 240
Query: 2494 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 2673
IQTLIGRVLADDIYMG RCIATRNQDIG+GLVNRFI RAQ IAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYMGARCIATRNQDIGIGLVNRFINLRAQSIAIRTPFTCRSASWICRL 300
Query: 2674 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 2853
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 2854 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 3033
KFNE+LVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSF+LVQNDQYVESEQVI
Sbjct: 361 KFNENLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFILVQNDQYVESEQVI 420
Query: 3034 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 3213
AEIRAGTSTLNFKE+VRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLG
Sbjct: 421 AEIRAGTSTLNFKERVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGK 480
Query: 3214 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDRIPDY 3393
PR SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTND SRQKFFTSDF G+KEDRIPDY
Sbjct: 481 PRRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDPSRQKFFTSDFWGQKEDRIPDY 540
Query: 3394 SDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIEIP 3573
SDLSR ICT R NLIDPT L+QNSDLFSKRRRNRFIIPLQ +QER NELMPPSGISIEIP
Sbjct: 541 SDLSRHICTSRRNLIDPTTLHQNSDLFSKRRRNRFIIPLQSIQERANELMPPSGISIEIP 600
Query: 3574 INGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQMKV 3753
NGIFRRNSI AY DDPRYRRKSSGITKYGTLEMHSIVKK+DLIEYRGGKEFRPKYQM+V
Sbjct: 601 TNGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKDDLIEYRGGKEFRPKYQMQV 660
Query: 3754 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELKIFS 3933
DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSR GLVRVERKKKRIELKIF
Sbjct: 661 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRAAGLVRVERKKKRIELKIFY 720
Query: 3934 GDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVRPVVT 4113
GD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVLVRPVVT
Sbjct: 721 GDIHFPGETDKISRHSGVLIPPGTGKQNFKESKKWKNWIYVQRITPSKKKYFVLVRPVVT 780
Query: 4114 YEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLNWD 4293
YEITDGITLATLFPPDLL E DNVQL+VVNYILY NGKPIRGISDTNIQLVRTCLVLNWD
Sbjct: 781 YEITDGITLATLFPPDLLQERDNVQLQVVNYILYVNGKPIRGISDTNIQLVRTCLVLNWD 840
Query: 4294 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXXXCT 4473
QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDP CT
Sbjct: 841 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPSGSGLLADNGSDCT 900
Query: 4474 NINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKYHNV 4653
NINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND KYHN+
Sbjct: 901 NINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDGKYHNM 960
Query: 4654 IKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD--NLKETF 4827
IKESI+ITKDPLIPI NSLGPLGTAFLI NVYSFYHLITHNQILVNNYLQLD NLK+TF
Sbjct: 961 IKESIKITKDPLIPINNSLGPLGTAFLIENVYSFYHLITHNQILVNNYLQLDNLNLKQTF 1020
Query: 4828 QVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCIAQNA 5007
QVIKYYLIDE E+I PD CSNIIFNLNWYF+H NYCQETS I SLGQFICEN IA+NA
Sbjct: 1021 QVIKYYLIDETEQIDKPDPCSNIIFNLNWYFLHPNYCQETSIITSLGQFICENISIAKNA 1080
Query: 5008 PYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDIT 5187
PYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEI+Y+GDTLITFIYEKSRSGDIT
Sbjct: 1081 PYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEIVYEGDTLITFIYEKSRSGDIT 1140
Query: 5188 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
QGLPKVEQVLEVRS+DSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 QGLPKVEQVLEVRSVDSISMNLEKRVEGWNERITRILGMP 1180
>gb|AKZ23936.1| RNA polymerase beta'' subunit (plastid) [Verbena hastata]
Length = 1387
Score = 2152 bits (5575), Expect = 0.0
Identities = 1077/1182 (91%), Positives = 1108/1182 (93%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHH+YGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHYYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNG+MP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGIMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQD+GVGLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDVGVGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPP+SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPESFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGE HWSTDVYHAPEFTYGNVHLLPKTSH+WI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGERHWSTDVYHAPEFTYGNVHLLPKTSHVWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
L G P SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTS+FSGKKEDR
Sbjct: 481 LFGEPCRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSNFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDYSDLSRI+CTGR NLID TI YQNSDLFSKRRRNRFIIPLQ +QERE ELMPPSGI+
Sbjct: 541 IPDYSDLSRILCTGRSNLIDSTIFYQNSDLFSKRRRNRFIIPLQSIQEREKELMPPSGIA 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
+EIPINGIFRRNSI AY DDPRYRRKSSGIT+YGTLEMHSIVKKEDLIEYRG +EFRPKY
Sbjct: 601 VEIPINGIFRRNSILAYFDDPRYRRKSSGITQYGTLEMHSIVKKEDLIEYRGCREFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITL +RSRVGGLVRVER K RIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLTLRSRVGGLVRVERNKNRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPGETDKISRHSGVLIPPGTGK+ IYV RITPSKKK+FVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKKNSKESKKGKNWIYVHRITPSKKKHFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITLA LFPPDLL E DNVQLRVVNYILYGNGK IR ISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLARLFPPDLLQEKDNVQLRVVNYILYGNGKSIRAISDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNW Q K SSSSQEARASFVEIRANGLIR FLRIDLVKS ISYIGKRNDP
Sbjct: 841 LNWAQHKNSSSSQEARASFVEIRANGLIRDFLRIDLVKSTISYIGKRNDPSGSGLLSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CTNI+PFSSIYSKA++QQPLNQNQRT+HTLLNRNTGFQSLIILSSSNCFRMGPF DVK
Sbjct: 901 SDCTNIHPFSSIYSKAKVQQPLNQNQRTLHTLLNRNTGFQSLIILSSSNCFRMGPFKDVK 960
Query: 4642 YHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKE 4821
YHNV+KESI I+KDPLIPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYL+LDNLK+
Sbjct: 961 YHNVLKESIPISKDPLIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYLELDNLKQ 1020
Query: 4822 TFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCIAQ 5001
TFQVIKYYL+DENEKIY PD CSNIIFNLNW F H +YCQ+TSTIMSLGQFICEN CIA+
Sbjct: 1021 TFQVIKYYLMDENEKIYKPDPCSNIIFNLNWDFRHSHYCQDTSTIMSLGQFICENICIAK 1080
Query: 5002 NAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGD 5181
NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGD
Sbjct: 1081 NAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGD 1140
Query: 5182 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
ITQGLPKVEQV EVRSIDSISMNLEKRV+GWNERITRILGMP
Sbjct: 1141 ITQGLPKVEQVFEVRSIDSISMNLEKRVDGWNERITRILGMP 1182
>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis] gi|557136853|emb|CDI43908.1| RNA polymerase
beta'' subunit (chloroplast) [Lindenbergia philippensis]
Length = 1368
Score = 2152 bits (5575), Expect = 0.0
Identities = 1084/1180 (91%), Positives = 1107/1180 (93%), Gaps = 2/1180 (0%)
Frame = +1
Query: 1774 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1953
MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1954 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2133
DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2134 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2313
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2314 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 2493
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 240
Query: 2494 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 2673
IQTLIGRVLADDIY+GTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYIGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRL 300
Query: 2674 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 2853
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 2854 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 3033
KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 420
Query: 3034 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 3213
AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG
Sbjct: 421 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 480
Query: 3214 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKEDRIP 3387
PR SSLVSLSLHKDQDQ SA+SRSVKRR TSNLSG ND+ RQKFFTS FSG KKEDRIP
Sbjct: 481 PRRSSLVSLSLHKDQDQTSAYSRSVKRRFTSNLSGPNDKPRQKFFTSGFSGKDKKEDRIP 540
Query: 3388 DYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIE 3567
DYS L R + TGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QER ++ M PSGISIE
Sbjct: 541 DYSALRRSLFTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERADKRMSPSGISIE 600
Query: 3568 IPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQM 3747
IPINGI RR SI AY DDPRYRRKSSGITKYGTLEMHSI+KKEDLIEYRGGKEFRPKYQ
Sbjct: 601 IPINGILRRKSILAYFDDPRYRRKSSGITKYGTLEMHSILKKEDLIEYRGGKEFRPKYQT 660
Query: 3748 KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELKI 3927
+VDRFFFIPEEVHILPGSSSIMVRNNSI+GVDTQITLNIRSRVGGLVRVERKKKRIELKI
Sbjct: 661 QVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNIRSRVGGLVRVERKKKRIELKI 720
Query: 3928 FSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVRPV 4107
FSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVLVRPV
Sbjct: 721 FSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVLVRPV 780
Query: 4108 VTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLN 4287
VTYEITDGITLATLFPPDL E DNVQL+VVNYILYGNGKPIRGISD NIQLVRTCLVLN
Sbjct: 781 VTYEITDGITLATLFPPDLFQERDNVQLQVVNYILYGNGKPIRGISDKNIQLVRTCLVLN 840
Query: 4288 WDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXXX 4467
W Q KKSSSSQEARASFVEIR+NGLIRHFLRIDLVKSIISYIGKRNDP
Sbjct: 841 WHQGKKSSSSQEARASFVEIRSNGLIRHFLRIDLVKSIISYIGKRNDPSGSGLLSDNGSD 900
Query: 4468 CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKYH 4647
CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND KYH
Sbjct: 901 CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDGKYH 960
Query: 4648 NVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKETF 4827
NVIKESI+ITKDPLIPIKNSLG LGTAFLI NVYSFYHLITHNQILVNNYLQLD +TF
Sbjct: 961 NVIKESIKITKDPLIPIKNSLGLLGTAFLIANVYSFYHLITHNQILVNNYLQLD---QTF 1017
Query: 4828 QVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCIAQNA 5007
QVIKYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIM LGQFICEN CIA+NA
Sbjct: 1018 QVIKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMGLGQFICENICIAKNA 1077
Query: 5008 PYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDIT 5187
P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGH+G+ILY+GDTLITFIYEKSRSGDIT
Sbjct: 1078 PHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHFGKILYEGDTLITFIYEKSRSGDIT 1137
Query: 5188 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
QGLPKVEQVLEVRS+DSISMNLEKRVEGWNE ITRILGMP
Sbjct: 1138 QGLPKVEQVLEVRSVDSISMNLEKRVEGWNEHITRILGMP 1177
>ref|YP_009183582.1| RNA polymerase beta subunit (chloroplast) [Scutellaria insignis]
gi|949600142|gb|ALN11593.1| RNA polymerase beta subunit
(chloroplast) [Scutellaria insignis]
Length = 1401
Score = 2143 bits (5552), Expect = 0.0
Identities = 1079/1192 (90%), Positives = 1107/1192 (92%), Gaps = 10/1192 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAE+QS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEKQSFILEKHHHSGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+ LVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIELVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHG LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPA LCSINLYVTIESEDIRHNVNIP QSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPALLCSINLYVTIESEDIRHNVNIPTQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYG+VHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGSVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSGTNDQ R+KFFTS FSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGTNDQPREKFFTSAFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDYSDL RIICTGRCNL+DPT+LYQNSDL SKRRRNR IIPLQ +QERENEL PPS IS
Sbjct: 541 IPDYSDLIRIICTGRCNLVDPTVLYQNSDLVSKRRRNRLIIPLQSIQERENELTPPSDIS 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY+DDPRYRRKSSGITKYGTLEMHSI+KKEDLIEYRGG+EFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIIKKEDLIEYRGGQEFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSYIMVRNNSIIGIDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPG+TDKISRHSGVLIPPGTGK IYVQRITPSKK YFVLVR
Sbjct: 721 KIFSGDIHFPGKTDKISRHSGVLIPPGTGKNNSKESKKWENWIYVQRITPSKKTYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWDQD+KSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDRKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSGSRLLSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CT INPFSS YSKARIQQPLNQNQRTIHTLLN+NTGFQSLIILSSSNCFRMGP NDVK
Sbjct: 901 SDCTKINPFSSSYSKARIQQPLNQNQRTIHTLLNKNTGFQSLIILSSSNCFRMGPLNDVK 960
Query: 4642 YHN------VIKESIQITKDPLIPIKNSLGPLGTAFLIV--NVYSFYHLITHNQILVNNY 4797
YHN VIKESIQITKDP+IPI NSLGPLGTA LI+ NV SFYHLITHNQILVNNY
Sbjct: 961 YHNHNVIHKVIKESIQITKDPVIPINNSLGPLGTALLILIANVSSFYHLITHNQILVNNY 1020
Query: 4798 LQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQ 4971
LQLDNLK+TFQVI KYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMSLGQ
Sbjct: 1021 LQLDNLKQTFQVIKFKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQ 1080
Query: 4972 FICENRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLIT 5151
FICEN CIA+N P+LKSGQVILV+VDSVVIRSAKPYLATPGATVHGHYG ILY+GDTLIT
Sbjct: 1081 FICENICIAKNVPHLKSGQVILVEVDSVVIRSAKPYLATPGATVHGHYGGILYEGDTLIT 1140
Query: 5152 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERI RILGMP
Sbjct: 1141 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERIPRILGMP 1192
>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
gi|558697185|gb|AHA84940.1| RNA polymerase beta'' subunit
[Ajuga reptans]
Length = 1377
Score = 2140 bits (5545), Expect = 0.0
Identities = 1076/1183 (90%), Positives = 1103/1183 (93%), Gaps = 5/1183 (0%)
Frame = +1
Query: 1774 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1953
MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1954 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2133
DLLTIPSKRWLVQDAEQQSL+LEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLVLEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2134 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2313
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2314 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 2493
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP+NGMMPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGMMPERIF 240
Query: 2494 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 2673
IQTLIGRVLADDIYMGTRCIATRNQD+G+GLVNRFITFRAQPIAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYMGTRCIATRNQDVGIGLVNRFITFRAQPIAIRTPFTCRSASWICRL 300
Query: 2674 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 2853
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 2854 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 3033
KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 420
Query: 3034 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 3213
AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLG
Sbjct: 421 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGR 480
Query: 3214 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDRIPDY 3393
PR SSLVSLS+HKDQDQM AHSRSVKRRSTSNLSGT D R+K FTSDFSGKKEDRIPDY
Sbjct: 481 PRRSSLVSLSIHKDQDQMGAHSRSVKRRSTSNLSGTKDPPREKLFTSDFSGKKEDRIPDY 540
Query: 3394 SDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIEIP 3573
SDLSRIIC RCNL+D ILY+NSDLFSKRRRNRFIIPLQ +QERENEL PS ISIEIP
Sbjct: 541 SDLSRIICASRCNLVDTVILYRNSDLFSKRRRNRFIIPLQPIQERENELTSPSDISIEIP 600
Query: 3574 INGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQMK- 3750
+NGIFRRNSI AY+DDPRYRRKSSGITKYGTLEMHSI KKEDLIEYRGGKEFR KYQMK
Sbjct: 601 VNGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIAKKEDLIEYRGGKEFRQKYQMKV 660
Query: 3751 --VDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELK 3924
VDRFFFIPEEVHILPGSSSIMVRNNSI+G DTQITLNIR+RV GLVRVERKKKRIELK
Sbjct: 661 ERVDRFFFIPEEVHILPGSSSIMVRNNSIVGADTQITLNIRTRVTGLVRVERKKKRIELK 720
Query: 3925 IFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVRP 4104
IFSGD+HFPGETDKISRH+GVLIPPGTGKQ IYVQRITPSKKKYFVLVRP
Sbjct: 721 IFSGDIHFPGETDKISRHNGVLIPPGTGKQNSKESKRGKNWIYVQRITPSKKKYFVLVRP 780
Query: 4105 VVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVL 4284
VVTYEITDGITL T F PDLL E DNV+LRVVNYIL GNGKPIRGISDTNIQLVRTCLVL
Sbjct: 781 VVTYEITDGITLGTFFSPDLLQERDNVKLRVVNYILSGNGKPIRGISDTNIQLVRTCLVL 840
Query: 4285 NWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXX 4464
NWDQDKKSSSSQEARASFVEIRANGLI+HFLRIDL+KS ISYIGKRNDP
Sbjct: 841 NWDQDKKSSSSQEARASFVEIRANGLIQHFLRIDLLKSTISYIGKRNDP--SGSGLLSDN 898
Query: 4465 XCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKY 4644
NINPFSSIYSKARI Q LNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND+KY
Sbjct: 899 GSDNINPFSSIYSKARIPQSLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDIKY 958
Query: 4645 HNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKET 4824
HNVIKESIQITKDP+IPIKNSLGPLGTAFLI NVYSFYHLITHN ILVNNYLQLDNLK+T
Sbjct: 959 HNVIKESIQITKDPVIPIKNSLGPLGTAFLITNVYSFYHLITHNPILVNNYLQLDNLKQT 1018
Query: 4825 FQV--IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCIA 4998
FQV KYYLIDENEKIYNP CSNIIFNLNWYF+H NYCQETSTIMSLGQFICEN CIA
Sbjct: 1019 FQVFKFKYYLIDENEKIYNPGRCSNIIFNLNWYFLHANYCQETSTIMSLGQFICENICIA 1078
Query: 4999 QNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSG 5178
+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKSRSG
Sbjct: 1079 KNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSG 1138
Query: 5179 DITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
DITQGLPKVEQVLEVRSIDSISMNLE+R+EGWNE ITRILGMP
Sbjct: 1139 DITQGLPKVEQVLEVRSIDSISMNLERRIEGWNECITRILGMP 1181
>ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) [Scutellaria baicalensis]
gi|827345829|gb|AKJ77130.1| RNA polymerase beta subunit-2
(chloroplast) [Scutellaria baicalensis]
Length = 1401
Score = 2135 bits (5533), Expect = 0.0
Identities = 1076/1192 (90%), Positives = 1103/1192 (92%), Gaps = 10/1192 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERAN VFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANPVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+ LVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIELVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHG LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPA LCSINLYVTIESEDIRHNVNIP QSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPALLCSINLYVTIESEDIRHNVNIPTQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYG+VHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGSVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSG NDQ R+KFFTS FSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGRNDQPREKFFTSAFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
IPDYSDL RIICTG CNL+DPT+LYQNSDL SKRRRNRFIIPLQ +QERENEL PPS I
Sbjct: 541 IPDYSDLIRIICTGHCNLVDPTVLYQNSDLVSKRRRNRFIIPLQSIQERENELTPPSDIP 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY+DDPRYRRKSSGITKYGTLEMHSI+KKEDLIEY G +EFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIIKKEDLIEYGGAQEFRPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSYIMVRNNSIIGIDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPG+TDKISRHSGVLIPPGTGK+ IYVQRITPSKK YFVLVR
Sbjct: 721 KIFSGDIHFPGKTDKISRHSGVLIPPGTGKKNSKESKKWENWIYVQRITPSKKTYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGI DTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGIYDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWDQD+KSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDRKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSGSRLLSDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 4641
CT INPFSSIYSK RIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRM P NDVK
Sbjct: 901 SDCTKINPFSSIYSKTRIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMSPLNDVK 960
Query: 4642 YHN------VIKESIQITKDPLIPIKNSLGPLGTAFLIV--NVYSFYHLITHNQILVNNY 4797
YHN VIKESIQITKDP+IPIKNSLGPLGTA LI+ NV SFYHLITHNQILVNNY
Sbjct: 961 YHNHNVIHKVIKESIQITKDPVIPIKNSLGPLGTALLILIANVSSFYHLITHNQILVNNY 1020
Query: 4798 LQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQ 4971
LQLDNLK+TFQVI KYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMSLGQ
Sbjct: 1021 LQLDNLKQTFQVIKFKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQ 1080
Query: 4972 FICENRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLIT 5151
FICEN CIA+NAP+LKSGQVILV+VDSVVIRSAKPYLATPGATVHGHYG ILY+GDTLIT
Sbjct: 1081 FICENICIAKNAPHLKSGQVILVEVDSVVIRSAKPYLATPGATVHGHYGGILYEGDTLIT 1140
Query: 5152 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLE R+EGWNERI RILGMP
Sbjct: 1141 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLENRIEGWNERIPRILGMP 1192
>gb|AKZ23934.1| RNA polymerase beta'' subunit (plastid) [Penstemon gracilis]
Length = 1389
Score = 2130 bits (5518), Expect = 0.0
Identities = 1075/1186 (90%), Positives = 1102/1186 (92%), Gaps = 4/1186 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF+QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFEQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLV+DAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVRDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFR QPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRVQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESED RHNV IPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDTRHNVKIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQ + KFF SDFSGKKEDR
Sbjct: 481 LLGGPYRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQPKHKFFISDFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
I DYSDLSRIICTG NLIDPTILY NSDLF+KRR+NRFI+PLQL+QERENEL+PPSGIS
Sbjct: 541 IHDYSDLSRIICTG--NLIDPTILYHNSDLFAKRRKNRFILPLQLIQERENELIPPSGIS 598
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEY GGKEFR KY
Sbjct: 599 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYGGGKEFRSKY 658
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
Q+KVDRFFFIPEEVHILPGS SIMVRNNSI+GVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 659 QLKVDRFFFIPEEVHILPGSCSIMVRNNSIVGVDTQITLNIRSRVSGLVRVERKKKRIEL 718
Query: 3922 KIFSGDVHFPGETDKISRHSGV-LIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLV 4098
KIFSGD+HFPGETDKISR+SGV LI PG GK IYVQRITPSKKKYFVLV
Sbjct: 719 KIFSGDIHFPGETDKISRYSGVFLISPGAGKPNSKESKKWKNWIYVQRITPSKKKYFVLV 778
Query: 4099 RPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 4278
RPVVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL
Sbjct: 779 RPVVTYEITDGINLATLFPPDLLQEWDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 838
Query: 4279 VLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXX 4458
VLNWDQDKKSSSS+EARASFVEIR NGLIRHFLRIDLVKS I+YIGKRNDP
Sbjct: 839 VLNWDQDKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPIAYIGKRNDPSGSGVLSHN 898
Query: 4459 XXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV 4638
CTNINPFSSIYSKARIQQPL+QNQRTIH LLNRNTG QSLIILSS+NCFRMGPFNDV
Sbjct: 899 RSDCTNINPFSSIYSKARIQQPLDQNQRTIHMLLNRNTGVQSLIILSSANCFRMGPFNDV 958
Query: 4639 KYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLK 4818
KYHNVIKESI+I KDPLIPIKN LGPLGTAF I NVYSFYHLITHNQI VNNY QL NLK
Sbjct: 959 KYHNVIKESIKIPKDPLIPIKNLLGPLGTAFPIANVYSFYHLITHNQIFVNNYFQLHNLK 1018
Query: 4819 ETFQV---IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENR 4989
+TFQV IKYYL+DENEKIYNPD SNIIFNLNWYF+H N CQETSTIMSLGQFICEN
Sbjct: 1019 QTFQVIKLIKYYLMDENEKIYNPDPSSNIIFNLNWYFLHPNDCQETSTIMSLGQFICENI 1078
Query: 4990 CIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKS 5169
CI +NAP LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKS
Sbjct: 1079 CITKNAPDLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKS 1138
Query: 5170 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
RSGDITQGLPKVEQVLEVRSIDSIS+NLEKR+EGWNERITRILGMP
Sbjct: 1139 RSGDITQGLPKVEQVLEVRSIDSISINLEKRIEGWNERITRILGMP 1184
>gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Perilla frutescens]
Length = 1398
Score = 2128 bits (5513), Expect = 0.0
Identities = 1079/1191 (90%), Positives = 1106/1191 (92%), Gaps = 9/1191 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNK IDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPENGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIY+GTRCI+TRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYIGTRCISTRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSINL VTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLSVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLG PR SSLVSLS+HKDQDQMSAHSRSVKR+STSN SGTND SR+KFFTSDFS KKE+R
Sbjct: 481 LLGEPRKSSLVSLSIHKDQDQMSAHSRSVKRKSTSNFSGTNDPSREKFFTSDFSDKKENR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
I DYSDLSRII TGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +Q+RENEL PP+ I
Sbjct: 541 ISDYSDLSRIIGTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQKRENELTPPADIL 600
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPING+FRRNSI AY+DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEF+PKY
Sbjct: 601 IEIPINGVFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFKPKY 660
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNI+SRVGGLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIKSRVGGLVRVERKKKRIEL 720
Query: 3922 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVR 4101
KIFSGD+HFPGETDKISRHSGVLIPPG GKQ IYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 4102 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 4281
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGI DTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGIYDTNIQLVRTCLV 840
Query: 4282 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 4461
LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDL KS I YIGKRN+P
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLQKSTILYIGKRNNPPGSGLLPDNG 900
Query: 4462 XXCTNINPFSSIYSKARIQQPL---NQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 4632
CTNINPFSSIYSK RIQQ L NQNQRTIHTLLNRN GFQSLIILSSSNCFRMGPFN
Sbjct: 901 LDCTNINPFSSIYSKVRIQQLLNQNNQNQRTIHTLLNRNKGFQSLIILSSSNCFRMGPFN 960
Query: 4633 DVKY--HNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQL 4806
DVKY HN IKESIQITKDP+IPIKNS GPLGTAFLI NVYSFYHLITHNQIL+NNYLQL
Sbjct: 961 DVKYHNHNAIKESIQITKDPVIPIKNSPGPLGTAFLIANVYSFYHLITHNQILLNNYLQL 1020
Query: 4807 DNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFIC 4980
DNLK+TFQ+I KYYLIDENEKI NP CSNIIFNL+ YF+H NYCQE STIMSLGQFIC
Sbjct: 1021 DNLKQTFQIIKFKYYLIDENEKIDNPRPCSNIIFNLSGYFLHPNYCQEKSTIMSLGQFIC 1080
Query: 4981 ENRCIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITF 5154
EN IA+NAP+ LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITF
Sbjct: 1081 ENIYIAKNAPHLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITF 1140
Query: 5155 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 1191
>ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) [Schwalbea americana]
gi|560176690|emb|CDJ38609.1| RNA polymerase beta''
subunit (chloroplast) [Schwalbea americana]
Length = 1382
Score = 2128 bits (5513), Expect = 0.0
Identities = 1069/1178 (90%), Positives = 1098/1178 (93%)
Frame = +1
Query: 1774 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1953
MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1954 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2133
DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2134 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2313
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2314 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 2493
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPR GMMPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRKGMMPERIF 240
Query: 2494 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 2673
IQTLIGRVLADDIY+GTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYIGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 300
Query: 2674 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 2853
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AE VRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGAAEQVRAPSNGKI 360
Query: 2854 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 3033
KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 420
Query: 3034 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 3213
AEIRAGTST NFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPK SHLWILLGG
Sbjct: 421 AEIRAGTSTWNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKPSHLWILLGG 480
Query: 3214 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDRIPDY 3393
PR SSLVSLSLHKDQDQM AHS SVKRRSTSNLSGT DQSR+KFFTSDF GKKEDRIPDY
Sbjct: 481 PRRSSLVSLSLHKDQDQMRAHSPSVKRRSTSNLSGTTDQSREKFFTSDFGGKKEDRIPDY 540
Query: 3394 SDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIEIP 3573
SDLSR ICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPL +QER NELM PSGISIEIP
Sbjct: 541 SDLSRRICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLHSIQERANELMSPSGISIEIP 600
Query: 3574 INGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQMKV 3753
NGIFRRNSI AY DDPRYRRKS GITKYGTLEMHSIVKKEDLIEYRGG+EF+PK QM+V
Sbjct: 601 TNGIFRRNSILAYFDDPRYRRKSPGITKYGTLEMHSIVKKEDLIEYRGGQEFKPKSQMQV 660
Query: 3754 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELKIFS 3933
DRFFFIPEEVHILP SSSIMVRNNS+IGVDTQITLNIRSRVGGLVRVE KKKRI+LKIFS
Sbjct: 661 DRFFFIPEEVHILPESSSIMVRNNSLIGVDTQITLNIRSRVGGLVRVEIKKKRIQLKIFS 720
Query: 3934 GDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLVRPVVT 4113
GD+HFPG+TDKISRHSG+LIPPGTGKQ I VQ ITPSKKKYFV +RP++T
Sbjct: 721 GDIHFPGKTDKISRHSGLLIPPGTGKQTSKESKKWKNLIDVQWITPSKKKYFVWIRPIIT 780
Query: 4114 YEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLNWD 4293
YEITDGI LATLFPPDLL E D+VQL+VVNYILYGNGKPIR ISDTNIQLVRTCLVLNWD
Sbjct: 781 YEITDGIPLATLFPPDLLQERDDVQLQVVNYILYGNGKPIRRISDTNIQLVRTCLVLNWD 840
Query: 4294 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXXXCT 4473
QDKKSSSSQEARASFVEIRANGLIRHFLRIDLV+SIISYIGKRNDP CT
Sbjct: 841 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVQSIISYIGKRNDPLGFGLLSDNRSDCT 900
Query: 4474 NINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKYHNV 4653
NINPFSSIYSKARIQQPL NQRTIHTLLNRNTGFQSLIILS+ NCFRMGPF + KYHNV
Sbjct: 901 NINPFSSIYSKARIQQPLPPNQRTIHTLLNRNTGFQSLIILSAYNCFRMGPFKEGKYHNV 960
Query: 4654 IKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLKETFQV 4833
IKESI+ITKDPL+PIKN LGPLGTAF + NVYSFY+LITHNQILVNNYLQLDNLK+TFQV
Sbjct: 961 IKESIKITKDPLLPIKNLLGPLGTAFRMANVYSFYYLITHNQILVNNYLQLDNLKQTFQV 1020
Query: 4834 IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRCIAQNAPY 5013
IKYYLIDENEKIYNPD SNIIFNLNWYF+H YCQETSTIMSLGQFICEN CIA+N P+
Sbjct: 1021 IKYYLIDENEKIYNPDPRSNIIFNLNWYFLHPKYCQETSTIMSLGQFICENICIAKNTPH 1080
Query: 5014 LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQG 5193
LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEIL +GDTLITFIYEKSRSGDITQG
Sbjct: 1081 LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLITFIYEKSRSGDITQG 1140
Query: 5194 LPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
LPKVEQVLEVRS+DSISMNLEKRVE WNERI RILGMP
Sbjct: 1141 LPKVEQVLEVRSLDSISMNLEKRVEDWNERIKRILGMP 1178
>gb|AKZ23933.1| RNA polymerase beta'' subunit (plastid) [Penstemon angustifolius]
Length = 1389
Score = 2127 bits (5512), Expect = 0.0
Identities = 1075/1186 (90%), Positives = 1101/1186 (92%), Gaps = 4/1186 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF+QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFEQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLV+DAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVRDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFR QPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRVQPIAIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESED RHNV IPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDTRHNVKIPPQSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 3381
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQ + KFF SDFSGKKEDR
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQPKHKFFISDFSGKKEDR 540
Query: 3382 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 3561
I DYSDLSRIICTG NLIDPTILY NSDLF+KRR+NRFI+PLQL+QERENEL+PPSGIS
Sbjct: 541 IHDYSDLSRIICTG--NLIDPTILYHNSDLFAKRRKNRFILPLQLIQERENELIPPSGIS 598
Query: 3562 IEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 3741
IEIPINGIFRRNSI AY DDPRYRRKSSGITKYGTLEMHSIVKKEDLIEY GGKEF KY
Sbjct: 599 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYGGGKEFWSKY 658
Query: 3742 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 3921
Q+KVDRFFFIPEEVHILPGS SIMVRNNSI+GVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 659 QLKVDRFFFIPEEVHILPGSCSIMVRNNSIVGVDTQITLNIRSRVSGLVRVERKKKRIEL 718
Query: 3922 KIFSGDVHFPGETDKISRHSGV-LIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVLV 4098
KIFSGD+HFPGETDKISR+SGV LI PG GK IYVQRITPSKKKYFVLV
Sbjct: 719 KIFSGDIHFPGETDKISRYSGVFLISPGAGKPNSKESKKWKNWIYVQRITPSKKKYFVLV 778
Query: 4099 RPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 4278
RPVVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL
Sbjct: 779 RPVVTYEITDGINLATLFPPDLLQEWDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 838
Query: 4279 VLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXX 4458
VLNWDQDKKSSSS+EARASFVEIR NGLIRHFLRIDLVKS I+YIGKRNDP
Sbjct: 839 VLNWDQDKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPIAYIGKRNDPSGSGVLSHN 898
Query: 4459 XXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV 4638
CTNINPFSSIYSKARIQQPL+QNQRTIH LLNRNTG QSLIILSSSNCFRMGPFNDV
Sbjct: 899 RSDCTNINPFSSIYSKARIQQPLDQNQRTIHMLLNRNTGVQSLIILSSSNCFRMGPFNDV 958
Query: 4639 KYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDNLK 4818
KYHNVIKESI+I KDPLIPIKN LGPLGTAF I NVYSFYHLITHNQI VNNY QL NLK
Sbjct: 959 KYHNVIKESIKIPKDPLIPIKNLLGPLGTAFPIANVYSFYHLITHNQIFVNNYFQLHNLK 1018
Query: 4819 ETFQV---IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENR 4989
+TFQV IKYYL+DENEKIYNPD SNIIFNLNWYF+H N CQETSTIMSLGQFICEN
Sbjct: 1019 QTFQVIKLIKYYLMDENEKIYNPDPSSNIIFNLNWYFLHPNDCQETSTIMSLGQFICENI 1078
Query: 4990 CIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKS 5169
CI +NAP LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIYEKS
Sbjct: 1079 CITKNAPDLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKS 1138
Query: 5170 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
RSGDITQGLPKVEQVLEVRSIDSIS+NLEKR+EGWNERITRILGMP
Sbjct: 1139 RSGDITQGLPKVEQVLEVRSIDSISINLEKRIEGWNERITRILGMP 1184
>ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [Hesperelaea palmeri]
gi|725798276|emb|CED79752.1| RNA polymerase beta'' chain
(chloroplast) [Hesperelaea palmeri]
Length = 1394
Score = 2118 bits (5488), Expect = 0.0
Identities = 1076/1189 (90%), Positives = 1102/1189 (92%), Gaps = 7/1189 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERI IQTL+GRVLADDIY GTRCIA+RNQDIG+GLVNRFITFRAQPI+IRTPFTCRSASW
Sbjct: 241 ERILIQTLMGRVLADDIYTGTRCIASRNQDIGIGLVNRFITFRAQPISIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI HNVNIP +SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPSKSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYH PEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHPPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKE 3375
LLGGP SSLVSLSLHKDQDQ++AHSRSVKRR TSNLS TND RQK F+S F G KKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQINAHSRSVKRRYTSNLSETNDPERQKLFSSYFYGKKKKE 540
Query: 3376 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 3555
DRI DYSDL+RI C GRCNLI PTIL+QNSDLFSKRRRNRFIIPLQ +QERENELMP SG
Sbjct: 541 DRISDYSDLNRIRCNGRCNLIYPTILHQNSDLFSKRRRNRFIIPLQSIQERENELMPRSG 600
Query: 3556 ISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 3735
ISIEIP NGIFRRNSI AY DDPRYRRKSSGITKYGT+EMHSIVKKEDLIEYRG K FRP
Sbjct: 601 ISIEIPPNGIFRRNSILAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKAFRP 660
Query: 3736 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITLNIRSRVGG VRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLNIRSRVGGFVRVERKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VR VVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDT+IQLVRTC
Sbjct: 781 VRLVVTYEITDGINLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTDIQLVRTC 840
Query: 4276 LVLNWDQD-KKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXX 4452
LVLNWDQD KKSSSS+EARASFVEIR NGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLS 900
Query: 4453 XXXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 4632
CTNINPFSSIYSKARIQQ LNQNQ TIHTLLNRNTGFQSLIILSSSNCFRMGPFN
Sbjct: 901 DNGSDCTNINPFSSIYSKARIQQSLNQNQGTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 960
Query: 4633 DV-KYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD 4809
DV KYHNVIKESIQITKDP IPIKNSLGP GTAF IVN YSFYHLITHNQILVNNYLQLD
Sbjct: 961 DVIKYHNVIKESIQITKDPRIPIKNSLGPFGTAFPIVNFYSFYHLITHNQILVNNYLQLD 1020
Query: 4810 NLKETFQVIKYYLIDENEKIYNPDSCSNII---FNLNWYFIHLNYCQETSTIMSLGQFIC 4980
NLK+TFQVIKYYL+DENEKIYNP+ SNII FNLNWYF+H NYCQETSTI+SLGQFIC
Sbjct: 1021 NLKQTFQVIKYYLMDENEKIYNPEPGSNIILNPFNLNWYFLHHNYCQETSTIISLGQFIC 1080
Query: 4981 ENRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY 5160
EN CIA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIY
Sbjct: 1081 ENVCIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIY 1140
Query: 5161 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 1189
>ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
gi|334084649|emb|CBS29340.1| RNA polymerase beta'' chain
[Olea woodiana subsp. woodiana]
Length = 1394
Score = 2114 bits (5478), Expect = 0.0
Identities = 1074/1189 (90%), Positives = 1101/1189 (92%), Gaps = 7/1189 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTL+GRVLADDIY GTRCIA+RNQDIG+GLVNRFITFRAQPI+IRTPFTCRSASW
Sbjct: 241 ERIFIQTLMGRVLADDIYTGTRCIASRNQDIGIGLVNRFITFRAQPISIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI HNVNIP +SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPSKSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYH PEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHPPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKE 3375
LLGGP SSLVSLSLHKDQDQ++AHSRSVKRR TSNLS TND RQK F+S F G KKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQINAHSRSVKRRYTSNLSETNDPERQKLFSSYFYGKKKKE 540
Query: 3376 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 3555
DRI DYSDL+RI C GRCNLI PTIL+QNSDLFSKRRRNRFIIPLQ +QERENELMP SG
Sbjct: 541 DRISDYSDLNRIRCNGRCNLIYPTILHQNSDLFSKRRRNRFIIPLQSIQERENELMPRSG 600
Query: 3556 ISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 3735
ISIEIP NGIFRRNSI AY DDPRYRRKSSGITKYGT+EMHSIVKKEDLIEYRG K FRP
Sbjct: 601 ISIEIPPNGIFRRNSILAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKAFRP 660
Query: 3736 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITLNIRSRVGG VRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLNIRSRVGGFVRVERKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGK+ IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKRNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VR VVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDT+IQLVRTC
Sbjct: 781 VRLVVTYEITDGINLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTDIQLVRTC 840
Query: 4276 LVLNWDQD-KKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXX 4452
LVLNWDQD KKSSSS+EARASFVEIR NGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLS 900
Query: 4453 XXXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 4632
CTNINPFSSIYSKARIQQ LNQNQ TIHTLLNRNTGFQSLIILSSSNCFRMGPFN
Sbjct: 901 DNGSDCTNINPFSSIYSKARIQQSLNQNQGTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 960
Query: 4633 DV-KYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD 4809
DV KYHNV KESIQITKDP IPIKNSLGP GTAF IVN YSFYHLITHNQILVNNYLQLD
Sbjct: 961 DVIKYHNVKKESIQITKDPRIPIKNSLGPFGTAFPIVNFYSFYHLITHNQILVNNYLQLD 1020
Query: 4810 NLKETFQVIKYYLIDENEKIYNPDSCSNII---FNLNWYFIHLNYCQETSTIMSLGQFIC 4980
NLK+TFQVIKYYL+DENEKIYNP+ SNII FNLNWYF+H NYCQETSTI+SLGQFIC
Sbjct: 1021 NLKQTFQVIKYYLMDENEKIYNPEPGSNIILNPFNLNWYFLHHNYCQETSTIISLGQFIC 1080
Query: 4981 ENRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY 5160
EN CIA+NAP+LKSGQV+LVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIY
Sbjct: 1081 ENVCIAKNAPHLKSGQVLLVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIY 1140
Query: 5161 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 1189
>ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334701878|ref|YP_004564487.1| RNA polymerase beta''
chain [Olea europaea subsp. maroccana]
gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain
(chloroplast) [Olea europaea subsp. cuspidata]
gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain
[Olea europaea subsp. maroccana]
gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain
(chloroplast) [Olea europaea subsp. cuspidata]
Length = 1394
Score = 2114 bits (5477), Expect = 0.0
Identities = 1074/1189 (90%), Positives = 1101/1189 (92%), Gaps = 7/1189 (0%)
Frame = +1
Query: 1762 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 1941
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 60
Query: 1942 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2121
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2122 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2301
PNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2302 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 2481
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTTRGISVSPRNGMMP 240
Query: 2482 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 2661
ERIFIQTL+GRVLADDIY GTRCIA+RNQDIG+GLVNRFITFRAQPI+IRTPFTCRSASW
Sbjct: 241 ERIFIQTLMGRVLADDIYTGTRCIASRNQDIGIGLVNRFITFRAQPISIRTPFTCRSASW 300
Query: 2662 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPS 2841
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 2842 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 3021
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI HNVNIP +SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPSKSFLLVQNDQYVES 420
Query: 3022 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 3201
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYH PEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHPPEFTYGNVHLLPKTSHLWI 480
Query: 3202 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKE 3375
LLGGP SSLVSLSLHKDQDQ++AHSRSVKRR TSNLS TND RQK F+S F G KKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQINAHSRSVKRRYTSNLSETNDPERQKLFSSYFYGKKKKE 540
Query: 3376 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 3555
DRI DYSDL+RI C GRCNLI PTIL+QNSDLFSKRRRNRFIIPLQ +QERENELMP SG
Sbjct: 541 DRISDYSDLNRIRCNGRCNLIYPTILHQNSDLFSKRRRNRFIIPLQSIQERENELMPRSG 600
Query: 3556 ISIEIPINGIFRRNSIFAYIDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 3735
ISIEIP NGIFRRNSI AY DDPRYRRKSSGITKYGT+EMHSIVKKEDLIEYRG K FRP
Sbjct: 601 ISIEIPPNGIFRRNSILAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKAFRP 660
Query: 3736 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 3915
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITLNIRSRVGG VRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLNIRSRVGGFVRVERKKKRI 720
Query: 3916 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXXIYVQRITPSKKKYFVL 4095
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGK IYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKLNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 4096 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 4275
VR VVTYEITDGI LATLFPPDLL E D+VQLRVVNYILYGNGKPIRGISDT+IQLVRTC
Sbjct: 781 VRLVVTYEITDGINLATLFPPDLLQERDSVQLRVVNYILYGNGKPIRGISDTDIQLVRTC 840
Query: 4276 LVLNWDQD-KKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXX 4452
LVLNWDQD KKSSSS+EARASFVEIR NGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLS 900
Query: 4453 XXXXXCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 4632
CTNINPFSSIYSKARIQQ LNQNQ TIHTLLNRNTGFQSLIILSSSNCFRMGPFN
Sbjct: 901 DNGSDCTNINPFSSIYSKARIQQSLNQNQGTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 960
Query: 4633 DV-KYHNVIKESIQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLD 4809
DV KYHNVIKESIQITKDP IPIKNSLGP GTAF IVN YSFYHLITHNQILVNNYLQLD
Sbjct: 961 DVIKYHNVIKESIQITKDPRIPIKNSLGPFGTAFPIVNFYSFYHLITHNQILVNNYLQLD 1020
Query: 4810 NLKETFQVIKYYLIDENEKIYNPDSCSNII---FNLNWYFIHLNYCQETSTIMSLGQFIC 4980
NLK+TFQVIKYYL+DENEKIYNP+ SNII FNLNWYF+H NYCQETSTI+SLGQFIC
Sbjct: 1021 NLKQTFQVIKYYLMDENEKIYNPEPGSNIILNPFNLNWYFLHHNYCQETSTIISLGQFIC 1080
Query: 4981 ENRCIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY 5160
EN CIA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITFIY
Sbjct: 1081 ENVCIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIY 1140
Query: 5161 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 5307
EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP
Sbjct: 1141 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMP 1189