BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00018175
         (1183 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   208   1e-84
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   217   1e-78
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   222   2e-78
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  207   1e-75
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     205   2e-75
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   187   2e-75
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   203   5e-75
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  203   5e-75
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   189   1e-74
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   189   2e-74
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   195   2e-73
gb|KYP40244.1| Retrovirus-related Pol polyprotein from transposo...   186   4e-72
gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposo...   195   9e-72
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...   187   2e-70
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...   181   6e-70
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           184   1e-69
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...   190   4e-69
gb|AAB82754.1| retrofit [Oryza longistaminata]                        179   3e-68
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc...   205   3e-67
ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868...   169   4e-67

>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  208 bits (529), Expect(3) = 1e-84
 Identities = 95/165 (57%), Positives = 119/165 (72%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
            +IKM QSDGG EF  L++ F  +GI HR+SCP++ QQNG AERKHRHI EVGL LL+ S 
Sbjct: 601  KIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSSG 660

Query: 393  LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            LP  FW DAF + +++INR P+ IL + SP+E L   +PDY  LR FGC CYPHLR +N 
Sbjct: 661  LPHIFWSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNS 720

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFP 79
            HK++FRS  C FIGY   +KGYK    + KIII+R+V+FDE  FP
Sbjct: 721  HKMDFRSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765



 Score =  114 bits (284), Expect(3) = 1e-84
 Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
 Frame = -3

Query: 878 LNQCNVPYSGNFNKN-VCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQSTHG 702
           +  CNVP   N   + VC SC   KSH LPFSDS T+Y+ P +L+++D+WGPS   S  G
Sbjct: 498 MKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVWGPSHYASREG 557

Query: 701 YKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSKWFK 555
           ++YYV F D  ++YTW Y +  KS+T   FI+FK++VE QF  K K F+
Sbjct: 558 FRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMFQ 606



 Score = 42.4 bits (98), Expect(3) = 1e-84
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSF-HLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFH 952
            + Q++  TLLRG +KNGLY F  +    P++          PT+ T L+     K     
Sbjct: 425  KSQDSKETLLRGNLKNGLYVFDEVQILKPDVYEH--TVDSVPTNRTTLYVQRTRK----- 477

Query: 951  SVKMPSLDTWHSRLGHASIEIVKS 880
                 S D WH+RL HAS +IV++
Sbjct: 478  -----SYDVWHNRLAHASRKIVQA 496


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  217 bits (552), Expect(3) = 1e-78
 Identities = 102/169 (60%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +QSD GGE+  L  FF   GI H +SCP+T QQNG AERKHRHIVEVGL LLA S
Sbjct: 575  RKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYS 634

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF + VYLINRTP+K+L +++P E L    PDY+SLR FGC C+PHLR YN
Sbjct: 635  SMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYN 694

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVIFDESVFPFA 73
             HKL+FRSK CTF+GY T +KG+K L P   ++ I+RDVIFDE+ FPFA
Sbjct: 695  THKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPFA 743



 Score = 97.4 bits (241), Expect(3) = 1e-78
 Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYSGNFNK-NVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + +++ N+P     NK +VC +C Q KSH+LP+S S+++   P +LI++D+WGP+ + 
Sbjct: 470 VEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDVWGPA-LT 528

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S  G +YYVSFI   +++TW YL+K KS+  Q F  F+ALVE  F +K
Sbjct: 529 SVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNRK 576



 Score = 29.6 bits (65), Expect(3) = 1e-78
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 957 FHSVKMPSLDTWHSRLGHASIEIVK 883
           F ++K PS + WHSRLGH +  IV+
Sbjct: 448 FGAIK-PSFERWHSRLGHPASPIVE 471


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  222 bits (566), Expect(3) = 2e-78
 Identities = 103/174 (59%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +Q+D GGE+  L  FF   GI H +SCP+T QQNG AERKHRHIVEVGLALLA S
Sbjct: 573  RKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYS 632

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF S VYLINRTPS++LH +SP E L G+ PDY +LR FGC C+P+LR YN
Sbjct: 633  SMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYN 692

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVIFDESVFPFANSEPS 58
            KHKL+FRS  CTF+GY T +KG+K L P   ++ I+RDV+FDE+ FPF    P+
Sbjct: 693  KHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKLHPN 746



 Score = 86.7 bits (213), Expect(3) = 2e-78
 Identities = 40/89 (44%), Positives = 59/89 (66%)
 Frame = -3

Query: 836 NVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQSTHGYKYYVSFIDHATRYT 657
           +VC +C ++KSH+L F  S +    P +L+ +D+WGP+  QS    KYYVSFID  +++T
Sbjct: 487 SVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPAP-QSVGNNKYYVSFIDDYSKFT 545

Query: 656 WFYLLKAKSDTYQAFINFKALVETQFEKK 570
           W YLLK KS+ +  F  F++LVE  F +K
Sbjct: 546 WIYLLKYKSEVFDKFHEFQSLVERLFNRK 574



 Score = 34.3 bits (77), Expect(3) = 2e-78
 Identities = 27/90 (30%), Positives = 37/90 (41%)
 Frame = -2

Query: 1152 RRFMLVMGQDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFF 973
            R+F  +  +D     TLLRG    GLY+          L SP               S  
Sbjct: 406  RKFFFI--KDLAMRRTLLRGRCHKGLYA----------LPSPS--------------SHH 439

Query: 972  NKPVVFHSVKMPSLDTWHSRLGHASIEIVK 883
            ++    + V  PS + WHSRLGH S  +V+
Sbjct: 440  HQVKQVYGVTKPSFERWHSRLGHPSYTVVE 469


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  207 bits (528), Expect(3) = 1e-75
 Identities = 92/169 (54%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERKHRHI+EVGL+LL+ +
Sbjct: 575  RKIIAMQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYA 634

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF +  YLINR PSK +   +P E L    PDY SLR FGC C+PHLR YN
Sbjct: 635  SMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYN 694

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
             HKL+FRSK C F+G+ TH+KG+K L +   ++ I+RDV+FDE++FPF+
Sbjct: 695  THKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENIFPFS 743



 Score = 93.2 bits (230), Expect(3) = 1e-75
 Identities = 43/108 (39%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYS-GNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + +++ N+P S  + N++VC++C ++KS +LP+  S ++   P +L+ +D+WGP+  +
Sbjct: 470 VKQVISKNNLPCSVESVNQSVCNACQEAKSRQLPYVRSTSVSQFPLELVFSDVWGPAP-E 528

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S    KYYVSFID  +++TW YLLK KS+ ++ F  F+ALVE  F++K
Sbjct: 529 SVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRK 576



 Score = 33.1 bits (74), Expect(3) = 1e-75
 Identities = 27/82 (32%), Positives = 32/82 (39%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +DQ T   LL G  ++GLY               P +    TS  AL             
Sbjct: 415  KDQVTKDILLEGRCRHGLYPI-------------PKSFGRTTSKQAL------------G 449

Query: 948  VKMPSLDTWHSRLGHASIEIVK 883
                SL  WHSRLGH S+ IVK
Sbjct: 450  TTKLSLSRWHSRLGHPSLPIVK 471


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  205 bits (521), Expect(3) = 2e-75
 Identities = 95/170 (55%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +Q+D GGE+  L  FF   GI H +SCP+T QQNG AERKHRHIVEVGL+LLA +
Sbjct: 566  RKIIAMQTDWGGEYEKLHDFFTKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHA 625

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF +  YLINRTPSK++ Y +P E L    P YTSLR FGC C+P+LR YN
Sbjct: 626  SMPLKFWDEAFIAATYLINRTPSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYN 685

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFAN 70
              KL+FRSK C F+GY   +KG+K L +   ++ I+RDV+FDE+VFPFA+
Sbjct: 686  ARKLQFRSKQCVFLGYSNLHKGFKCLDVAAGRVYISRDVVFDENVFPFAS 735



 Score = 90.5 bits (223), Expect(3) = 2e-75
 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYSGNFNK-NVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + ++  N+P  G   +  VC +C + KSH+LPF  S +  + P +L+ +D+WGP+   
Sbjct: 461 VQKVVSHNNLPCLGESKELGVCDACQKGKSHQLPFLKSTSASNFPLELVFSDVWGPAP-D 519

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S  G KYYVSFID  +++TW YLLK KS+ +  F  F+ LVE  F +K
Sbjct: 520 SVGGRKYYVSFIDDFSKFTWIYLLKQKSEVFHKFHEFQQLVERIFYRK 567



 Score = 37.7 bits (86), Expect(3) = 2e-75
 Identities = 28/86 (32%), Positives = 35/86 (40%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +DQ T  TLLRG   NGLY    S  S                             V  +
Sbjct: 408  KDQITKNTLLRGPCCNGLYPLPASTSSSKQ--------------------------VLGA 441

Query: 948  VKMPSLDTWHSRLGHASIEIVKSFKS 871
            +K P++  WHSRLGH S +IV+   S
Sbjct: 442  IK-PTVSIWHSRLGHPSWQIVQKVVS 466


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  187 bits (475), Expect(3) = 2e-75
 Identities = 87/171 (50%), Positives = 117/171 (68%)
 Frame = -2

Query: 588 NTI*KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLAL 409
           N   K IK +Q DGGGEF +LS+     GI  R SCPYT  QNG AERKHRH+VE GL L
Sbjct: 480 NQFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTL 539

Query: 408 LAQSHLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHL 229
           LAQ+ +P+ +W +AF + V+LINR P++++   SP++ L    PDYT+++ FGC CYP L
Sbjct: 540 LAQAKMPLHYWWEAFSTAVFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPCL 599

Query: 228 RSYNKHKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFPF 76
           + YN+HKL+F +  C F+GY   +KGYK L    +I I+R V+F+E  FPF
Sbjct: 600 KPYNQHKLQFHTTKCVFLGYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPF 650



 Score =  112 bits (281), Expect(3) = 2e-75
 Identities = 50/109 (45%), Positives = 69/109 (63%)
 Frame = -3

Query: 890 LSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQS 711
           L+  +  CN+  S   N   C +C   K+H LPF +S +   EP  L+H+D+WGP+ + S
Sbjct: 379 LNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPAPISS 438

Query: 710 THGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSK 564
             G+KYYV F+D  +R+TW Y LK KSD +QAFI F+ LVE QF K+ K
Sbjct: 439 VSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIK 487



 Score = 33.1 bits (74), Expect(3) = 2e-75
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +D+ T   LL G +K+GLY       S N                        +P VF S
Sbjct: 326  KDKLTGRILLEGKIKDGLYQLPGGSTSTN-----------------------KRPHVFFS 362

Query: 948  VKMPSLDTWHSRLGHASIEIV 886
            +K    +TWH +LGH + +++
Sbjct: 363  IK----ETWHRKLGHPNSKVL 379


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  203 bits (516), Expect(3) = 5e-75
 Identities = 90/169 (53%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERKH+HI+EVGL+LL+ +
Sbjct: 578  RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYA 637

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF +  YLINR PSK +   +P E L    PDY+SLR F C C+PHL  YN
Sbjct: 638  SMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYN 697

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
             HKL+FRSK C F+G+ TH+KG+K L +   ++ I+RDV+FDE+VFPF+
Sbjct: 698  THKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFS 746



 Score = 96.3 bits (238), Expect(3) = 5e-75
 Identities = 44/108 (40%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYS-GNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + +++ N+P S  + N++VC++C ++KSH+LP+  S ++   P +L+ +D+WGP+  +
Sbjct: 473 VKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-E 531

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S    KYYVSFID  +++TW YLLK KS+ ++ F  F+ALVE  F++K
Sbjct: 532 SVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRK 579



 Score = 32.7 bits (73), Expect(3) = 5e-75
 Identities = 27/82 (32%), Positives = 33/82 (40%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +DQ T   LL G  ++GLY     P+S                    F    NK  +   
Sbjct: 418  KDQVTRDVLLEGKCRHGLYPI---PKS--------------------FGRSTNKQAL--G 452

Query: 948  VKMPSLDTWHSRLGHASIEIVK 883
                SL  WHSRLGH S+ IVK
Sbjct: 453  AAKLSLSRWHSRLGHPSLPIVK 474


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  203 bits (516), Expect(3) = 5e-75
 Identities = 90/169 (53%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576  KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
            ++I  +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERKH+HI+EVGL+LL+ +
Sbjct: 578  RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYA 637

Query: 396  HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
             +P++FW +AF +  YLINR PSK +   +P E L    PDY+SLR F C C+PHL  YN
Sbjct: 638  SMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYN 697

Query: 216  KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
             HKL+FRSK C F+G+ TH+KG+K L +   ++ I+RDV+FDE+VFPF+
Sbjct: 698  THKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFS 746



 Score = 96.3 bits (238), Expect(3) = 5e-75
 Identities = 44/108 (40%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYS-GNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + +++ N+P S  + N++VC++C ++KSH+LP+  S ++   P +L+ +D+WGP+  +
Sbjct: 473 VKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-E 531

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S    KYYVSFID  +++TW YLLK KS+ ++ F  F+ALVE  F++K
Sbjct: 532 SVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRK 579



 Score = 32.7 bits (73), Expect(3) = 5e-75
 Identities = 27/82 (32%), Positives = 33/82 (40%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +DQ T   LL G  ++GLY     P+S                    F    NK  +   
Sbjct: 418  KDQVTRDVLLEGKCRHGLYPI---PKS--------------------FGRSTNKQAL--G 452

Query: 948  VKMPSLDTWHSRLGHASIEIVK 883
                SL  WHSRLGH S+ IVK
Sbjct: 453  AAKLSLSRWHSRLGHPSLPIVK 474


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  189 bits (481), Expect(2) = 1e-74
 Identities = 86/166 (51%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
 Frame = -2

Query: 570  IKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSHL 391
            IK +QSD GGEF A +      GI HR++CP+T  QNG  ERKHRHIVE+GL LL+ + L
Sbjct: 618  IKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHAAL 677

Query: 390  PMRFWPDAFCSYVYLINRTPSKILH-YISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            P++FW  +F   VYLINR PS  +  + SP+ AL  + PDY+ ++ FGCLC+PHLR YN 
Sbjct: 678  PLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNN 737

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFPF 76
            HKL++RS PC ++G    +KG+K L    +I I++DVIF ES FP+
Sbjct: 738  HKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783



 Score =  119 bits (299), Expect(2) = 1e-74
 Identities = 52/113 (46%), Positives = 72/113 (63%)
 Frame = -3

Query: 902 HLLRLSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPS 723
           H   +   LN CN+P+S       C+ C   KSH+L    SNT+Y +PF++IH DLWGP+
Sbjct: 507 HTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLWGPA 566

Query: 722 SVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSK 564
              S +GY YY++F+D  T++TW Y LKAKSD  +AF  FKAL++ QF+   K
Sbjct: 567 PFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIK 619


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  189 bits (479), Expect(2) = 2e-74
 Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
 Frame = -2

Query: 570  IKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSHL 391
            IK +QSD GGEF A +      GI HR++CP+T  QNG  ERKHRHIVE+GL LL+ + L
Sbjct: 618  IKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHADL 677

Query: 390  PMRFWPDAFCSYVYLINRTPSKILH-YISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            P++FW  +F   VYLINR PS  +  + SP+ AL  + PDY+ ++ FGCLC+PHLR YN 
Sbjct: 678  PLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNN 737

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFPF 76
            HKL+++S PC ++G    +KG+K L    +I I++DVIF ES FP+
Sbjct: 738  HKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783



 Score =  119 bits (299), Expect(2) = 2e-74
 Identities = 52/113 (46%), Positives = 72/113 (63%)
 Frame = -3

Query: 902 HLLRLSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPS 723
           H   +   LN CN+P+S       C+ C   KSH+L    SNT+Y +PF++IH DLWGP+
Sbjct: 507 HTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLWGPA 566

Query: 722 SVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSK 564
              S +GY YY++F+D  T++TW Y LKAKSD  +AF  FKAL++ QF+   K
Sbjct: 567 PFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIK 619


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  195 bits (496), Expect(3) = 2e-73
 Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
            +I  VQ+D GGE+  L+ FF   GI H +SCPY  QQNG AERKHRH++EV L LLA + 
Sbjct: 538  KILAVQTDWGGEYQKLNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIEVALTLLAHAS 597

Query: 393  LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            +P++FW +A  +  YLINRTPSK++++  P E L    P+YT+LR FGC  +P+LR YNK
Sbjct: 598  MPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNK 657

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
            HKL FRSK C F+GY   +KG+K L +   ++ ++RDV FDES+FPF+
Sbjct: 658  HKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFS 705



 Score = 95.5 bits (236), Expect(3) = 2e-73
 Identities = 46/108 (42%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYSGNFNKN-VCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           ++R L++ N+P S   NK+ +C +C + KSH+LP+  S+++  +P +LI +++WGP+ + 
Sbjct: 432 VTRVLSKNNLPCSTVANKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPAPI- 490

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S  G K+YVSFID  +++TW YLLK KS+ +Q F  F+ LVE  F  K
Sbjct: 491 SVGGKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVERFFGHK 538



 Score = 35.8 bits (81), Expect(3) = 2e-73
 Identities = 22/81 (27%), Positives = 30/81 (37%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +D+ T  T+L+G  +  LYS   SP                                 H+
Sbjct: 381  KDRATRNTILKGRCRRRLYSLPTSPAKQ-----------------------------VHA 411

Query: 948  VKMPSLDTWHSRLGHASIEIV 886
               PS   WHSRLGH ++ IV
Sbjct: 412  ATTPSFSRWHSRLGHPAVPIV 432


>gb|KYP40244.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 720

 Score =  186 bits (471), Expect(2) = 4e-72
 Identities = 86/168 (51%), Positives = 112/168 (66%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
            +IK VQSD GG + A + F  T+GI HR+ CP+T  QNG+ ERKHRHIVE+GL LL  + 
Sbjct: 551  KIKSVQSDWGGVYQAFTSFLATNGIEHRLICPHTHHQNGVVERKHRHIVEIGLTLLHHAS 610

Query: 393  LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            LP++FW   F + +YLINR PS  L++  PF  L    PDY  LR FGC C+P LR    
Sbjct: 611  LPLQFWDFTFTTAIYLINRFPSAALNFDVPFTVLFNKSPDYKFLRTFGCACFPFLRPCAS 670

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFPFAN 70
            HKL FRS+ C F+GY   +KGYK L   ++I I++DVIF+E  FP+ +
Sbjct: 671  HKLHFRSQECVFLGYSNSHKGYKCLSSSSRIYISKDVIFNEHRFPYTD 718



 Score =  115 bits (288), Expect(2) = 4e-72
 Identities = 57/113 (50%), Positives = 71/113 (62%)
 Frame = -3

Query: 902 HLLRLSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPS 723
           H+L+L   L QCN+  S  +    CSSC   KSH+LP S S T+Y  P  LI TDLWGPS
Sbjct: 443 HVLKL--VLTQCNLLPSNTYVTEFCSSCYVGKSHRLPSSASQTVYSAPLDLIFTDLWGPS 500

Query: 722 SVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSK 564
            + S  GY YYV+FID  ++YTW Y LK+K++T   F  FKA+ E QF  K K
Sbjct: 501 HITSFSGYIYYVAFIDAFSKYTWVYPLKSKAETLSVFQQFKAMAELQFNTKIK 553


>gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 302

 Score =  195 bits (495), Expect(3) = 9e-72
 Identities = 89/166 (53%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
 Frame = -2

Query: 570 IKMVQSDGGGEFIA-LSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
           +K +Q+D GGEFI  L ++ +  G++HR+ CP+TP QNG+ ERKHRHIVE+GL L + + 
Sbjct: 131 LKSLQTDWGGEFIIPLPKYLKDLGVNHRVICPHTPHQNGVIERKHRHIVELGLTL-SHAS 189

Query: 393 LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
           LP++FW   FC+ VYLINR P+  L Y+ P+  L    PDYT L+ FGC C+P LR YNK
Sbjct: 190 LPLKFWDSTFCTAVYLINRLPTASLKYVVPYTILFKQSPDYTFLKTFGCACFPLLRPYNK 249

Query: 213 HKLEFRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVIFDESVFPF 76
           HKL+FRS  C F+GY T +KGYK L P  KI I++DV+F+E  FP+
Sbjct: 250 HKLDFRSHECVFLGYSTSHKGYKCLSPIGKIFISKDVVFNEYRFPY 295



 Score =  102 bits (255), Expect(3) = 9e-72
 Identities = 43/103 (41%), Positives = 66/103 (64%)
 Frame = -3

Query: 872 QCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQSTHGYKY 693
           QCN+P     +   C++C   K+H+LP + S+ +Y  P +L+++DLWGP+ +QS++ YKY
Sbjct: 30  QCNIPVVNKIDGFFCNACYMGKAHRLPSNLSDLVYKNPLELVYSDLWGPAPIQSSNNYKY 89

Query: 692 YVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSK 564
           Y+SF++    +TW YLL+ K DT   F  FK +VE QF    K
Sbjct: 90  YLSFVNAYPCFTWIYLLQNKFDTLTVFKQFKMMVELQFNTSLK 132



 Score = 23.5 bits (49), Expect(3) = 9e-72
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 954 HSVKMPSLDTWHSRLGHASIEIVK 883
           ++VK  S   WH+RLG+    + K
Sbjct: 2   NNVKSSSHTLWHARLGNPKFHVQK 25


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score =  187 bits (474), Expect(3) = 2e-70
 Identities = 88/169 (52%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576 KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
           ++I  +Q+D GGE+  L+ FF+  GI H +SCP+T QQNG AERKHR IVEVGLALLA +
Sbjct: 468 RKIIAMQTDWGGEYQKLNSFFEKIGISHHVSCPHTHQQNGSAERKHRLIVEVGLALLAYA 527

Query: 396 HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
            +P+++W +AF +  ++INR PS+IL Y +P E L  +  DY+S R FGC C+P+LR YN
Sbjct: 528 SMPLKYWDEAFLAATHIINRIPSRILQYDTPLECLFNHKLDYSSFRIFGCACWPNLRPYN 587

Query: 216 KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
            HKL+FRS  C F+G    + GYK L +   +I I RDV+FDE+VFP +
Sbjct: 588 AHKLQFRSMQCVFLGPSHTHNGYKCLDIATGRIYICRDVVFDENVFPLS 636



 Score = 94.7 bits (234), Expect(3) = 2e-70
 Identities = 41/90 (45%), Positives = 68/90 (75%)
 Frame = -3

Query: 839 KNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQSTHGYKYYVSFIDHATRY 660
           ++VC +C ++KSH+LP+S+S ++ ++P +LI++D+WGP+S  S  G K+YVSFID   ++
Sbjct: 381 ESVCDACQKAKSHQLPYSNSMSVSNKPLELIYSDVWGPAST-SFGGKKFYVSFIDSYRKF 439

Query: 659 TWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           +W Y LK KSD ++ F +F+ LVE  F++K
Sbjct: 440 SWIYFLKHKSDVFEKFHDFQQLVERLFDRK 469



 Score = 35.0 bits (79), Expect(3) = 2e-70
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +D+ T +T+L+G  ++GLY               P+      +F                
Sbjct: 312  KDRTTRSTVLKGPRRHGLYPL-------------PSTSSTKQAFAVA------------- 345

Query: 948  VKMPSLDTWHSRLGHASIEIV 886
               PSL+ WHSRLGH SI IV
Sbjct: 346  ---PSLERWHSRLGHPSIPIV 363


>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
            gi|225898008|dbj|BAH30336.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 1459

 Score =  181 bits (460), Expect(3) = 6e-70
 Identities = 89/177 (50%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
            +I+ + SD GGEFIAL  F  ++GI H  S P+TP+ NGL+ERKHRHIVE GL LL Q+ 
Sbjct: 591  KIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQAS 650

Query: 393  LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            +P  +W  AF + VYLINR P+ +L   SPF+ L G+ P+Y  LR FGCLC+P LR Y +
Sbjct: 651  VPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTR 710

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFANSEPSQPKT 46
            +KLE RSK C F+GY      Y  L + +N++  +R V+FDES +PFA S   Q ++
Sbjct: 711  NKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQS 767



 Score = 95.9 bits (237), Expect(3) = 6e-70
 Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYS-GNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           L+  L++ ++P S  + NK  CS CL +KSHKLPF+ S+     P + I TD+W  S + 
Sbjct: 485 LNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVW-TSPII 543

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S   YKYY+  +DH TRYTW Y L+ KS     FI FKALVE +F+ K
Sbjct: 544 SHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQAK 591



 Score = 37.7 bits (86), Expect(3) = 6e-70
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +D  T T LL+G  K+ LY + ++        +PPA        TALF S   K      
Sbjct: 430  KDLNTGTLLLQGRTKDDLYEWPVT--------NPPA--------TALFTSPSPKT----- 468

Query: 948  VKMPSLDTWHSRLGHASIEIVKSFKS 871
                +L +WHSRLGH S  I+ +  S
Sbjct: 469  ----TLSSWHSRLGHPSASILNTLLS 490


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  184 bits (467), Expect(3) = 1e-69
 Identities = 89/169 (52%), Positives = 114/169 (67%), Gaps = 3/169 (1%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIA--LSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQ 400
            +IK+ QSDGGGEF +  + +     GI HRISCPYTPQQNG+AERKHRH VE+GL+++  
Sbjct: 577  KIKVFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMMFH 636

Query: 399  SHLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSY 220
            SH P++FW +AF +  +L N  PS  L  +SP EAL    P+Y  LR FG  CYP LR  
Sbjct: 637  SHTPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPL 696

Query: 219  NKHKLEFRSKPCTFIGYDTHYKGYKVLL-PDNKIIITRDVIFDESVFPF 76
             +HK E RS  C F+GY++ YKGY+ L  P  ++ I+R VIFDE  FPF
Sbjct: 697  GEHKFEPRSLQCVFLGYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPF 745



 Score =  102 bits (254), Expect(3) = 1e-69
 Identities = 55/115 (47%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
 Frame = -3

Query: 887 SRALNQCNVPYSGNFNKN----VCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSS 720
           SR L Q       +FNK+    VC  C   KS KL F  SN+   +    IH DLWGPS 
Sbjct: 468 SRILQQLKSSKEISFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSP 527

Query: 719 VQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKKSKWFK 555
           V S  G+KYYV F+D  +RY+WFY LKAKSD +  F+ F+ LVE QF  K K F+
Sbjct: 528 VVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQ 582



 Score = 27.3 bits (59), Expect(3) = 1e-69
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 963 VVFHSVKM--PSLDTWHSRLGHASIEIVKSFKS 871
           V F+S +    S + WH RLGH++  I++  KS
Sbjct: 444 VAFYSNRQCAASEEIWHHRLGHSNSRILQQLKS 476


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 807

 Score =  190 bits (482), Expect(3) = 4e-69
 Identities = 88/168 (52%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = -2

Query: 573  EIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSH 394
            +I  +Q D GGE+  L  FF   GI H +SCPY  QQN  AERKHRHIVEVGLALLA + 
Sbjct: 539  KIITMQKDWGGEYQKLHSFFDKIGISHHVSCPYAHQQNSSAERKHRHIVEVGLALLAHAS 598

Query: 393  LPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNK 214
            +P++ W + F +  YLINRTP+K++ + +P E L   +P+Y+ LR FGC C+P+LR YN 
Sbjct: 599  MPLKLWDEVFYTAAYLINRTPNKVIKFETPLERLFKQLPNYSLLRVFGCACWPNLRPYNN 658

Query: 213  HKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
            HKL+FRSK C F+ Y   +KG+K L +   ++ I+RDVIFDE+VF F+
Sbjct: 659  HKLQFRSKQCVFLDYSHLHKGFKCLDVSTGRVYISRDVIFDENVFSFS 706



 Score = 97.1 bits (240), Expect(3) = 4e-69
 Identities = 44/101 (43%), Positives = 71/101 (70%)
 Frame = -3

Query: 890 LSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQS 711
           +SR +NQ  +P   + +++VC +C ++KSH+LP+S S ++   P +L+++D+WG ++  S
Sbjct: 434 VSRVVNQNKLPCQKSHSESVCDACQKAKSHQLPYSRSTSVSTRPLELVYSDVWG-TAPSS 492

Query: 710 THGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVE 588
             G K+YVSFID  +++TW Y LK KSD +Q F  F+ALVE
Sbjct: 493 VGGNKFYVSFIDDFSKFTWVYSLKHKSDVFQKFHEFQALVE 533



 Score = 25.4 bits (54), Expect(3) = 4e-69
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 939 PSLDTWHSRLGHASIEIV 886
           PS   WHSRL H +  IV
Sbjct: 417 PSFARWHSRLSHPTTPIV 434


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  179 bits (454), Expect(3) = 3e-68
 Identities = 86/170 (50%), Positives = 118/170 (69%), Gaps = 2/170 (1%)
 Frame = -2

Query: 576  KEIKMVQSDG-GGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQ 400
            ++I  +Q+D  GG +  L+ FF   G+          +QNG AERKHRHIVEVGL+LL+ 
Sbjct: 574  RKIIAMQTDWRGGRYQKLNSFFAQIGLIIMCHVLTLIRQNGSAERKHRHIVEVGLSLLSY 633

Query: 399  SHLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSY 220
            + +P++FW +AF +  YLINR PSK +   +P E L    PDY+SLR FGC C+PHLR Y
Sbjct: 634  ASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCACWPHLRPY 693

Query: 219  NKHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
            N HKL+FRSK C F+G+ TH+KG+K L +   ++ I+RDV+FDE+VFPF+
Sbjct: 694  NTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENVFPFS 743



 Score = 96.3 bits (238), Expect(3) = 3e-68
 Identities = 44/108 (40%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -3

Query: 890 LSRALNQCNVPYS-GNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQ 714
           + + +++ N+P S  + N++VC++C ++KSH+LP+  S ++   P +L+ +D+WGP+  +
Sbjct: 469 VKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-E 527

Query: 713 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
           S    KYYVSFID  +++TW YLLK KS+ ++ F  F+ALVE  F++K
Sbjct: 528 SVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRK 575



 Score = 33.9 bits (76), Expect(3) = 3e-68
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPV---V 958
            +DQ T   LL G  ++GLY                             P FF +      
Sbjct: 414  KDQVTRDVLLEGKCRHGLYPI---------------------------PKFFGRSTNKQA 446

Query: 957  FHSVKMPSLDTWHSRLGHASIEIVK 883
              + K+ SL  WHSRLGH S+ IVK
Sbjct: 447  LGAAKL-SLSRWHSRLGHPSLPIVK 470


>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1016

 Score =  205 bits (521), Expect(2) = 3e-67
 Identities = 94/169 (55%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576 KEIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQS 397
           ++I  +Q+D GGE+  L  FF   GI H +SCPY  QQNG AERKHRHIVEVGLALLA +
Sbjct: 186 RKIISMQTDWGGEYEKLHSFFTKIGISHHVSCPYAHQQNGSAERKHRHIVEVGLALLAHA 245

Query: 396 HLPMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYN 217
            +P++FW +AF +  YLINR PSK++ Y +P E L    P+Y++LR FGC C+P+LR YN
Sbjct: 246 SVPLKFWDEAFLAATYLINRLPSKVIQYSAPLERLLDQKPNYSALRTFGCACWPNLRPYN 305

Query: 216 KHKLEFRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVIFDESVFPFA 73
           K KLEFRSK C F+GY   +KG+K L +   ++ I+RDV+FDE+VFPF+
Sbjct: 306 KRKLEFRSKQCVFLGYSNIHKGFKCLDVSTGRVYISRDVVFDENVFPFS 354



 Score = 80.1 bits (196), Expect(2) = 3e-67
 Identities = 36/82 (43%), Positives = 54/82 (65%)
 Frame = -3

Query: 815 QSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQSTHGYKYYVSFIDHATRYTWFYLLKA 636
           Q+K H+LP+  S+++   P +L+ +D+WGP+ V S    KYYVSFID  +++TW YLLK 
Sbjct: 107 QAKGHQLPYPKSSSVSSHPLELVFSDVWGPAPV-SVESRKYYVSFIDDFSKFTWIYLLKN 165

Query: 635 KSDTYQAFINFKALVETQFEKK 570
           KS+ +  F  F+  VE  F +K
Sbjct: 166 KSEVFSKFHEFQQRVERLFNRK 187


>ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868780 [Brassica rapa]
          Length = 2690

 Score =  169 bits (427), Expect(3) = 4e-67
 Identities = 85/175 (48%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
 Frame = -2

Query: 570  IKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKHRHIVEVGLALLAQSHL 391
            I  + SD GGE+I L  F  THGI H  S P+TP+ NG++ERKHRHIVE GL LL +S +
Sbjct: 1270 IVTLYSDNGGEYIGLRSFLATHGISHLTSPPHTPEHNGISERKHRHIVETGLTLLGKSAV 1329

Query: 390  PMRFWPDAFCSYVYLINRTPSKILHYISPFEALTGNMPDYTSLRAFGCLCYPHLRSYNKH 211
            P  +WP AF + VYLINR PS +   +SP+  L G  P+Y  LR FG LC+P LR Y ++
Sbjct: 1330 PRCYWPFAFAAAVYLINRMPSPVTQNVSPYAKLFGQQPNYQKLRVFGSLCFPWLRPYAQN 1389

Query: 210  KLEFRSKPCTFIGYDTHYKGYKVLLP-DNKIIITRDVIFDESVFPF-ANSEPSQP 52
            KL+ RS PC F+GY      Y  L P   ++  +R V F E  FPF   + PS P
Sbjct: 1390 KLDVRSIPCVFLGYSLTQSSYICLDPKTQRLYSSRHVQFLEDTFPFRTQTSPSAP 1444



 Score = 98.6 bits (244), Expect(3) = 4e-67
 Identities = 47/107 (43%), Positives = 66/107 (61%)
 Frame = -3

Query: 890  LSRALNQCNVPYSGNFNKNVCSSCLQSKSHKLPFSDSNTLYHEPFQLIHTDLWGPSSVQS 711
            L   ++Q ++P S +  +  C  CL +KSHKLPF  +     +P Q +++D+W    V S
Sbjct: 1164 LKTLVSQFSLPISDSIKQFSCVDCLTNKSHKLPFHTNTIKSDKPLQYLYSDVWTSPIVSS 1223

Query: 710  THGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVETQFEKK 570
             H YKYY+ F+DH TRYTW Y LK KS   + FI FKALVE +F+ +
Sbjct: 1224 DH-YKYYLIFVDHFTRYTWLYPLKQKSQVRETFIAFKALVENRFKTR 1269



 Score = 38.1 bits (87), Expect(3) = 4e-67
 Identities = 28/86 (32%), Positives = 35/86 (40%)
 Frame = -2

Query: 1128 QDQETSTTLLRGTVKNGLYSFHLSPQSPNMLRSPPAAPFNPTSFTALFPSFFNKPVVFHS 949
            +D  T   LL+G  KN LY +                P  PT  T    S   K      
Sbjct: 1109 KDLSTGARLLQGKTKNELYEW----------------PLPPTKITTYLASPSPKT----- 1147

Query: 948  VKMPSLDTWHSRLGHASIEIVKSFKS 871
                SL +WHSRLGH S+ I+K+  S
Sbjct: 1148 ----SLASWHSRLGHPSLPILKTLVS 1169