BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00017982
         (1724 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   646   0.0  
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   586   0.0  
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   582   0.0  
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   610   0.0  
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo...   576   0.0  
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo...   570   0.0  
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   583   0.0  
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   580   0.0  
gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposo...   558   0.0  
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   559   0.0  
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   583   0.0  
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   555   0.0  
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   553   0.0  
gb|KYP34165.1| Copia protein [Cajanus cajan]                          546   0.0  
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   562   0.0  
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...   562   0.0  
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   564   0.0  
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   544   0.0  
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   563   0.0  
gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposo...   527   e-180

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  646 bits (1667), Expect = 0.0
 Identities = 320/555 (57%), Positives = 415/555 (74%), Gaps = 3/555 (0%)
 Frame = +3

Query: 15   HSFSPDTDVATNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEW 194
            +S  P+  + T P+       HHMVTRSK GIFKP +  V  N+ +EP T++EA+  P+W
Sbjct: 702  NSDEPNESINTRPVTXPQQP-HHMVTRSKNGIFKPXVYTVDLNV-EEPNTFQEAISHPKW 759

Query: 195  KEAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQS 374
            KEAM +E+ AL+KN TW+L +LP ++  +GCRWV+K K N DG++S+YKARLVAKGY+Q 
Sbjct: 760  KEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQV 819

Query: 375  PGFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFE- 551
            PGFD+ ETFSPVV+PT++RV+L++A+S+ W I+QLDV+NAFLNG+L  ++YM+QPPGF+ 
Sbjct: 820  PGFDFYETFSPVVKPTTIRVVLAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDG 879

Query: 552  -QHLDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMF 728
              + ++ LVC+L K+LYGLKQA RAW  KL   LQ  GFS +K+D S+F + +   SS+F
Sbjct: 880  KTNQEQKLVCKLHKALYGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVR-FTNCSSLF 938

Query: 729  ILTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKY 905
            +L YVDD++VTG++  EI  L+ +L+  FS+KDLG+L YFLGIE K T+ G + LSQ+KY
Sbjct: 939  VLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKY 998

Query: 906  IQDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYS 1085
            IQDLL K  M GAKS  TPM+    LS   G PI +   YRS+VG L Y+TITRPEI++S
Sbjct: 999  IQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFS 1058

Query: 1086 VNKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRR 1265
            VNKV QFMQ PLDTHWKAVKRILRYL GT  LG+    S+++ L  FCDADWGSD+DDRR
Sbjct: 1059 VNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRR 1118

Query: 1266 STSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRS 1445
            STSG CVF+GK+LVSWSSKKQ   SRSSTEAEYRSLA    +++WL SL  EL   +   
Sbjct: 1119 STSGHCVFLGKSLVSWSSKKQHTTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMV 1178

Query: 1446 PIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKP 1625
            P++W DN S +SL+ NP+ HSRTKH ELDL+FVREKV+   + V HVP+ DQ AD+FTKP
Sbjct: 1179 PVIWCDNISTVSLSANPVLHSRTKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKP 1238

Query: 1626 LSGQFFIRMRNKLHI 1670
            LS +FF ++R KL +
Sbjct: 1239 LSFRFFDKLREKLTV 1253


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  586 bits (1511), Expect = 0.0
 Identities = 293/540 (54%), Positives = 387/540 (71%), Gaps = 4/540 (0%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            M TRSK+GI KPK  +V      EPK  K+AL  P+W EAMKQEY AL+KNNTWTL  LP
Sbjct: 1    MQTRSKSGIHKPKYPSVLL-AQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
            PD+  IGC+WV++ K N+DG++++YKARLVAKG+ Q PGFD+ ETFSP+++P ++R+IL+
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            LA+S  W I QLDV+NAFLNG L+  +YM+QPPGFE   D +LVC+L+K+LYGLKQA R 
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP-DSTLVCKLNKALYGLKQAPRQ 178

Query: 624  WCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQL 803
            W  +L   L   GF  SK DPS+F  H   S+ +++L YVDD+I+TG +    Q L++QL
Sbjct: 179  WFERLQYTLLQFGFKASKCDPSLFTYHM-QSNIVYLLVYVDDIIITGNSFQFTQQLIDQL 237

Query: 804  KQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNPP 980
               FS+K LG L YFLGIE +H  +G + L+Q KYI+DLL +  M  A + ++PMV +  
Sbjct: 238  NSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCK 297

Query: 981  LSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILRY 1160
            LSK     +AD++ YRS+VG L Y TITRPE+S++VNKV QFM  PL++HW AVKRILRY
Sbjct: 298  LSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRY 357

Query: 1161 LAGTVHLGLHFIQS---DSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQA 1331
            L GT+  GLH   +       L  +CDADW +D DDRRSTSG  +F+G NL+SW S+KQ 
Sbjct: 358  LKGTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQP 417

Query: 1332 LVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHSR 1511
            +V+RSSTEAEYRSLA    +++W+ +L  EL +P   +P ++ DNQS +SLA NP+ HSR
Sbjct: 418  VVARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFS-TPTIYCDNQSTVSLAHNPVLHSR 476

Query: 1512 TKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIVPDPTSN 1691
            TKH E++L FVREKVL N + VQH+P+ DQ AD  TKPLS   F+ +R+KL +V  P S+
Sbjct: 477  TKHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKVVELPFSS 536


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  582 bits (1501), Expect = 0.0
 Identities = 296/542 (54%), Positives = 384/542 (70%), Gaps = 8/542 (1%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            M TR+KAGI KP++         EPK  K+AL    W  AMKQEY+AL+ N TWTL +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
            P+K  IGC+WV++ K N+DGT++KYKARLVAKG+ Q  G DY ETFSPVV+P ++R+IL+
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            LAL+  W I+QLDV+NAFLNG+L  ++YM QPPGFE   DK+LVC+L K++YGLKQA RA
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESS-DKTLVCKLHKAIYGLKQAPRA 179

Query: 624  WCSKLGNILQMLGFSVSKADPSIF-YKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQ 800
            W  KL   L  L F +SK DPS+F Y H   ++ ++IL YVDD+I+TG N + +Q+++ Q
Sbjct: 180  WFDKLKTTLFQLNFQISKCDPSLFVYSH--DNNVIYILVYVDDIIITGNNSSTLQNIIAQ 237

Query: 801  LKQHFSIKDLGDLHYFLGIEFK-HTSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNP 977
            L   FS+KDLG L +FLGIE K +T   + L+Q KYI+DLL++  M+ +   ++PMV   
Sbjct: 238  LNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297

Query: 978  PLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILR 1157
             LS+   +   D +LYRS+VG L Y TITRPEIS+SVNKV QFM  PL+ HW AVKRILR
Sbjct: 298  KLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILR 357

Query: 1158 YLAGTVHLGLHFIQSDS---LVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQ 1328
            YL GT+ LGLH   + S   L +  +CDADW SD DDRRSTSG  +F+G NL+SW SKKQ
Sbjct: 358  YLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQ 417

Query: 1329 ALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHS 1508
             +V+RSS EAEYRSLA    +++W+ +L  ELH+    +P+V+ DN S ++LA NP+ H+
Sbjct: 418  TVVARSSAEAEYRSLALATAEVLWIQTLLSELHVS-HHTPVVYCDNMSTVALAHNPVLHA 476

Query: 1509 RTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIV---PD 1679
            RTKH ELDL FVREKV  N + V HVP++DQ ADI TK LS   F  +R KL +V   P 
Sbjct: 477  RTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDSSPQ 536

Query: 1680 PT 1685
            PT
Sbjct: 537  PT 538


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  610 bits (1572), Expect = 0.0
 Identities = 305/556 (54%), Positives = 390/556 (70%), Gaps = 1/556 (0%)
 Frame = +3

Query: 6    PIEHSFSPDTDVA-TNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALI 182
            P++H  S   D + T  + +     H M+TR+K+GI KPKI   +   ++EP +   AL 
Sbjct: 889  PVQHVVSSIADASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAA---IREPSSVSAALQ 945

Query: 183  IPEWKEAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKG 362
              EWK+AM  EYDAL +NNTW+L  LP  +Q IGC+WVYKTK N DGT+ KYKARLVAKG
Sbjct: 946  QDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKG 1005

Query: 363  YTQSPGFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPP 542
            + Q  GFD+ ETFSPVV+P++VRV+ ++ALS+ W IKQLDV+NAFLNGDL  +++M+QP 
Sbjct: 1006 FHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQ 1065

Query: 543  GFEQHLDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSS 722
            GF    + +LVCRL K+LYGLKQA RAW  KL   L   GF  +K+D S+F + +  +  
Sbjct: 1066 GFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLR-FTPNHI 1124

Query: 723  MFILTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSGMFLSQRK 902
             ++L YVDD++V G++   I SL+ QL   FS+KDLG++HYFLGI+  HT++G+ LSQ K
Sbjct: 1125 TYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTK 1184

Query: 903  YIQDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISY 1082
            YI+DLL K  M   K + TP+     L   +G P+ D   YRS VG L YVTITRPE+S+
Sbjct: 1185 YIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSF 1244

Query: 1083 SVNKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDR 1262
            SVNKV QFMQ P + HWK VKRILRYL GT+  GLH  +S +L L  FCDADW SDLDDR
Sbjct: 1245 SVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDR 1304

Query: 1263 RSTSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQR 1442
            RSTSG CVF+G NL+SW SKKQ +VSRSS E EYRSLA  V ++ WL SL  EL +PL +
Sbjct: 1305 RSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAK 1364

Query: 1443 SPIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTK 1622
             P+VW DN S + L+ NP+ H+RTKH ELDL+FVREKV+   + V+HVPS DQ AD+ TK
Sbjct: 1365 PPLVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTK 1424

Query: 1623 PLSGQFFIRMRNKLHI 1670
             +S   FI  R+KL I
Sbjct: 1425 TVSSTQFIEFRHKLRI 1440


>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 552

 Score =  576 bits (1484), Expect = 0.0
 Identities = 290/551 (52%), Positives = 384/551 (69%), Gaps = 9/551 (1%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVST-------NILQEPKTYKEALIIPEWKEAMKQEYDALVKNNT 242
            M+TR+KAGI KPK  N+ T       N   EP++ KEA+ IP WK+ M +EY AL+KNNT
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 243  WTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPT 422
            W L  LP  + LIGCRWV+K KTN+DG+++++KARLVAKG+ Q  GFD+ ETFSPVV+P 
Sbjct: 61   WILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVVKPA 120

Query: 423  SVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYG 602
            ++R+ILS+ +S+ W ++Q+D+ NAFLNGDL  DIYM QPPGF Q  DKSLVC+L KSLYG
Sbjct: 121  TIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQ-TDKSLVCKLQKSLYG 179

Query: 603  LKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEI 782
            LKQA RAW  +L   L  +GF  +K D S+F + +      FIL YVDD+I+ G++ + I
Sbjct: 180  LKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFH-KDHITFILVYVDDIIICGSSTSAI 238

Query: 783  QSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLLSKAGMQGAKSSTT 959
             S+VEQL+  F ++DLG  +YFLGI+     +  + L+Q KYI DLL++  M  AK   T
Sbjct: 239  SSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAKPIKT 298

Query: 960  PMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKA 1139
            PMV    L    G    + + YRSIVG L Y+TITRPEI++SVNKV Q+MQ P + HW A
Sbjct: 299  PMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNPHWMA 358

Query: 1140 VKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSS 1319
            VKRILRYL GT++  LH I+S    +  FCDADWGS+L+DR+ST+G+ +++G N +SWSS
Sbjct: 359  VKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPISWSS 418

Query: 1320 KKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPI 1499
            KKQ  VSRS+TEAEYRS+A    ++ WL +L  ELHIP    PI++ DN SA+ L+ NPI
Sbjct: 419  KKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIPTTSKPIIYCDNLSAVLLSTNPI 478

Query: 1500 HHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIVPD 1679
             H++TKHFE+DL+FVR++V    + VQH+PS +Q  DI TK LS   F   +NKL +   
Sbjct: 479  LHTKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQTTDILTKALSFPAFNHCKNKLRVRLH 538

Query: 1680 PT-SN*GGIKD 1709
            PT S   GI+D
Sbjct: 539  PTLSLREGIRD 549


>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 553

 Score =  570 bits (1469), Expect = 0.0
 Identities = 292/540 (54%), Positives = 382/540 (70%), Gaps = 11/540 (2%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVST------NILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTW 245
            M+TRSK GIFKPK   V+T      +  +EPKT KEAL IP WK+AM QEY+AL+ N TW
Sbjct: 1    MITRSKHGIFKPKTYEVTTPTQKLHDPFKEPKTIKEALAIPNWKQAMDQEYNALIHNKTW 60

Query: 246  TLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTS 425
             L  LP    L+GC+W++K KTNADGT++++KARL+AKG+ Q  G D+ ETF PVV+P +
Sbjct: 61   VLTHLPVGANLVGCKWIFKVKTNADGTINRHKARLMAKGFNQQSGLDFTETFIPVVKPIT 120

Query: 426  VRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGL 605
            +R +L++ALS  W ++QLD+ NAFLNGDL   IYM QPPGF    DK++VC+L K LYGL
Sbjct: 121  IRTVLTIALSLNWSLRQLDIANAFLNGDLQETIYMAQPPGFTNG-DKNMVCKLQKFLYGL 179

Query: 606  KQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEIQ 785
            KQA RAW  KL + L +LGF+ +K+D S+F++    S+ + IL YVDD+I++G+++TEI 
Sbjct: 180  KQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFR-ITTSNIILILVYVDDLIISGSSQTEID 238

Query: 786  SLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLLSKAGMQGAKSSTTP 962
            S+V  L+  F  +DLG  +YF GI+    S+  + L+Q KYI DLL +A M  AK  TT 
Sbjct: 239  SVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLTQTKYINDLLKRANMVTAKPVTTR 298

Query: 963  M----VGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTH 1130
            M    V +  L+  +  P  + SLYRSIVG L Y+ ITRPEIS+SVNKV QFMQ P  TH
Sbjct: 299  MFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLIITRPEISFSVNKVCQFMQEPKATH 358

Query: 1131 WKAVKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVS 1310
            W+AVKRILRYL GT   G+   +S++L +  FCDADWG D+DDR+ST+GFCVF+G N +S
Sbjct: 359  WQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADWGVDVDDRKSTTGFCVFLGCNPIS 418

Query: 1311 WSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAK 1490
            WSS+KQ  VSRS+ EAEYRSLA    ++ W+ +L  EL +P  R+P ++ DN SA+ LA 
Sbjct: 419  WSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHELQVPNIRTPKIYCDNLSAVLLAA 478

Query: 1491 NPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHI 1670
            NPI HS+TKHFELDL+FVR+KV    I VQH+PSL+Q ADIFTKPL+   F     KL +
Sbjct: 479  NPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQTADIFTKPLTYPSFSSCMYKLRL 538


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  583 bits (1503), Expect = 0.0
 Identities = 299/564 (53%), Positives = 387/564 (68%), Gaps = 4/564 (0%)
 Frame = +3

Query: 3    LPIEHSFSPDTDVATNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALI 182
            +P   +  P +    +P N      H M TR+K GI KP++         EPKT K+AL 
Sbjct: 515  IPTSSNLEPSSSPIIHPHNV-----HPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALS 569

Query: 183  IPEWKEAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKG 362
             P W  AM+ EY+AL+ NNTW+L  LPP +  IGC+WV++ K N +G++ KYKARLVAKG
Sbjct: 570  NPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKG 629

Query: 363  YTQSPGFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPP 542
            + Q  GFDY ETFSPV++P +VR+IL+LAL+  W I+QLDV+NAFLNG L+ ++YM+QPP
Sbjct: 630  FNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPP 689

Query: 543  GFEQHLDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSS 722
            GFE   DK+LVC+L K++YGLKQA RAW  KL + L  L F  SK DPS+F    G ++ 
Sbjct: 690  GFEAS-DKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQG-NNV 747

Query: 723  MFILTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQR 899
            ++IL YVDD+I+TG N + + +LV QL   FS+KDLGDL +FLGIE K    G + L+Q 
Sbjct: 748  IYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQS 807

Query: 900  KYIQDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEIS 1079
            KYI+DLL++  M+G+K  ++PM+    LSK   +   DASLYRS+VG L Y TITRPEIS
Sbjct: 808  KYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEIS 867

Query: 1080 YSVNKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHF---IQSDSLVLTTFCDADWGSD 1250
            +SVNKV QFM  PL  HW AVKRILRYL GT   GL       S SL +  +CDADW SD
Sbjct: 868  FSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASD 927

Query: 1251 LDDRRSTSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHI 1430
             DDRRSTSG  +F+G NLVSW SKKQ +V+RSSTEAEYRSLA    ++ W+ +L  EL +
Sbjct: 928  PDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV 987

Query: 1431 PLQRSPIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAAD 1610
                +PI++ DN S ++LA NP+ H+RTKH ELDL FVREKV    ++V HVP++DQ AD
Sbjct: 988  -THSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCAD 1046

Query: 1611 IFTKPLSGQFFIRMRNKLHIVPDP 1682
            + TK LS   F  +R+KL +V  P
Sbjct: 1047 VLTKALSPTRFCELRSKLQVVESP 1070


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  580 bits (1496), Expect = 0.0
 Identities = 294/570 (51%), Positives = 395/570 (69%), Gaps = 14/570 (2%)
 Frame = +3

Query: 39   VATNPLNESNAAG------HHMVTRSKAGIFKPK-----ILNVSTNILQEPKTYKEALII 185
            VAT P+ E   +       H M TRSKAGIFKPK     ++  S +   EP T KEAL  
Sbjct: 439  VATVPIIEPGVSSSGPQNAHLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAK 498

Query: 186  PEWKEAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGY 365
            PEW +AMK EY ALV N TW+L  LP   + IGC+W++K+K N DG+  ++KARLVAKGY
Sbjct: 499  PEWLKAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGY 558

Query: 366  TQSPGFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPG 545
             Q PG D+ ETFSPVV+PT+VR++LSLA++  W I Q+D++N FL+GDL   +YM QPPG
Sbjct: 559  NQKPGLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMSQPPG 618

Query: 546  FE-QHLDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSS 722
            F  QH DK  VC+L+K++YGLKQA R+W  KL N L  +GF  +K+D S+F + +  +++
Sbjct: 619  FNTQHKDK--VCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVR-FSKTTT 675

Query: 723  MFILTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQR 899
            + +L YVDD+I+TG ++ EI+S++  L   FS+KDLG LHYFLG+E   T  G + L+Q 
Sbjct: 676  LMLLIYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQT 735

Query: 900  KYIQDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEIS 1079
            KY++++L KA M  +    TPM+ N  L++     + D S YRSIVG L Y+TITRP++S
Sbjct: 736  KYLREILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVS 795

Query: 1080 YSVNKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDD 1259
            ++VNKV Q+M  P + HWKAVKRILRYL GT+H GL   ++  L L  FCD+DWG+D DD
Sbjct: 796  FAVNKVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDD 855

Query: 1260 RRSTSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQ 1439
            R+STSG+CV++G NL+SWSS+KQ  VSRS+TEAEYRS+A    D+IW+ SL  EL +P +
Sbjct: 856  RKSTSGYCVYLGSNLISWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVP-K 914

Query: 1440 RSPIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFT 1619
              P ++ DN SA+ +  NP+ HS+TKHFELDLHFVR+KV  N ++V H+P+  Q AD  T
Sbjct: 915  SLPRIYCDNLSAVLITANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLT 974

Query: 1620 KPLSGQFFIRMRNKLHIVP-DPTSN*GGIK 1706
            KPL+ Q F   RNKL +   D  S  G +K
Sbjct: 975  KPLAKQHFHHFRNKLMVTTLDTMSLRGDVK 1004


>gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 513

 Score =  558 bits (1438), Expect = 0.0
 Identities = 275/514 (53%), Positives = 365/514 (71%), Gaps = 8/514 (1%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVST-------NILQEPKTYKEALIIPEWKEAMKQEYDALVKNNT 242
            M+TR+KAGI KPK  N+ T       N   EP++ KEA+ IP WK+ M +EY AL+KNNT
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 243  WTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPT 422
            W L  LP  + LIGCRWV+K KTN+DG+++++KARLVAKG+ Q  GFD+ ETFSPVV+P 
Sbjct: 61   WILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVVKPA 120

Query: 423  SVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYG 602
            ++R+ILS+ +S+ W ++Q+D+ NAFLNGDL  DIYM QPPGF Q  DKSLVC+L KSLYG
Sbjct: 121  TIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQ-TDKSLVCKLQKSLYG 179

Query: 603  LKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEI 782
            LKQA RAW  +L   L  +GF  +K D S+F + +      FIL YVDD+I+ G++ + I
Sbjct: 180  LKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFH-KDHITFILVYVDDIIICGSSTSAI 238

Query: 783  QSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLLSKAGMQGAKSSTT 959
             S+VEQL+  F ++DLG  +YFLGI+     +  + L+Q KYI DLL++  M  AK   T
Sbjct: 239  SSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAKPIKT 298

Query: 960  PMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKA 1139
            PMV    L    G    + + YRSIVG L Y+TITRPEI++SVNKV Q+MQ P + HW A
Sbjct: 299  PMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNPHWMA 358

Query: 1140 VKRILRYLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSS 1319
            VKRILRYL GT++  LH I+S    +  FCDADWGS+L+DR+ST+G+ +++G N +SWSS
Sbjct: 359  VKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPISWSS 418

Query: 1320 KKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPI 1499
            KKQ  VSRS+TEAEYRS+A    ++ WL +L  ELHIP    PI++ DN SA+ L+ NPI
Sbjct: 419  KKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIPTTSKPIIYCDNLSAVLLSTNPI 478

Query: 1500 HHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQ 1601
             HS+TKHFE+DL+FVR++V    + VQH+PS +Q
Sbjct: 479  LHSKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQ 512


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  559 bits (1440), Expect = 0.0
 Identities = 291/538 (54%), Positives = 373/538 (69%), Gaps = 5/538 (0%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            M TR+K GI KP++         EPKT K+AL  P W  AM+ EY+AL+ N TW+L  LP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
            P +  IGC+WV++ K N +GT+ KYKA LVAKG+ Q  GFDY ETFSPV++P +VR+IL+
Sbjct: 61   PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            LAL+  W I+QLDV+NAFLNG L+ ++YM QPPGFE   DK LVC+L K++YGLKQA RA
Sbjct: 121  LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEAS-DKCLVCKLHKAIYGLKQAPRA 179

Query: 624  WCSKLGNILQMLGFSVSKADPSIF-YKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQ 800
            W  KL + L    F  SK DPS+F Y H  A++ ++IL YVDD+I+T  N + + +LV Q
Sbjct: 180  WFEKLKSTLLQFHFQASKCDPSLFVYSH--ANNVIYILVYVDDIIITSNNSSILHTLVSQ 237

Query: 801  LKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNP 977
            L   FS+KDLGDL YFLGIE K  S G + L+Q KYI+DLL++  M+  K  ++PM+ + 
Sbjct: 238  LHSVFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDS 297

Query: 978  PLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILR 1157
             LSK   +   DASLYRS+VG L Y TITR EIS+SVNKV QFM +PL  H  AVKRILR
Sbjct: 298  KLSKAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILR 357

Query: 1158 YLAGTVHLGLHF---IQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQ 1328
            YL GT   GLH      S SL +  +CDADW SDLDDRRST G  +F+  NLVSW SKK+
Sbjct: 358  YLKGTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKK 417

Query: 1329 ALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHS 1508
             +V+RSST+AEYRSLA    ++ W+ +L  EL +    +PI++ DN S ++LA NPI H+
Sbjct: 418  TVVARSSTKAEYRSLALATTEVTWIQTLLSELKVN-HSTPIIFCDNLSTVALAHNPILHA 476

Query: 1509 RTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIVPDP 1682
            RTKH ELDL FVREKV    ++V HVP++DQ AD+ TK LS   F  +R+KL +V  P
Sbjct: 477  RTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPSRFCVLRSKLQVVESP 534


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  583 bits (1503), Expect = 0.0
 Identities = 299/564 (53%), Positives = 387/564 (68%), Gaps = 4/564 (0%)
 Frame = +3

Query: 3    LPIEHSFSPDTDVATNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALI 182
            +P   +  P +    +P N      H M TR+K GI KP++         EPKT K+AL 
Sbjct: 850  IPTSSNLEPSSSPIIHPHNV-----HPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALS 904

Query: 183  IPEWKEAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKG 362
             P W  AM+ EY+AL+ NNTW+L  LPP +  IGC+WV++ K N +G++ KYKARLVAKG
Sbjct: 905  NPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKG 964

Query: 363  YTQSPGFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPP 542
            + Q  GFDY ETFSPV++P +VR+IL+LAL+  W I+QLDV+NAFLNG L+ ++YM+QPP
Sbjct: 965  FNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPP 1024

Query: 543  GFEQHLDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSS 722
            GFE   DK+LVC+L K++YGLKQA RAW  KL + L  L F  SK DPS+F    G ++ 
Sbjct: 1025 GFEAS-DKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQG-NNV 1082

Query: 723  MFILTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQR 899
            ++IL YVDD+I+TG N + + +LV QL   FS+KDLGDL +FLGIE K    G + L+Q 
Sbjct: 1083 IYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQS 1142

Query: 900  KYIQDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEIS 1079
            KYI+DLL++  M+G+K  ++PM+    LSK   +   DASLYRS+VG L Y TITRPEIS
Sbjct: 1143 KYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEIS 1202

Query: 1080 YSVNKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHF---IQSDSLVLTTFCDADWGSD 1250
            +SVNKV QFM  PL  HW AVKRILRYL GT   GL       S SL +  +CDADW SD
Sbjct: 1203 FSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASD 1262

Query: 1251 LDDRRSTSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHI 1430
             DDRRSTSG  +F+G NLVSW SKKQ +V+RSSTEAEYRSLA    ++ W+ +L  EL +
Sbjct: 1263 PDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV 1322

Query: 1431 PLQRSPIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAAD 1610
                +PI++ DN S ++LA NP+ H+RTKH ELDL FVREKV    ++V HVP++DQ AD
Sbjct: 1323 -THSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCAD 1381

Query: 1611 IFTKPLSGQFFIRMRNKLHIVPDP 1682
            + TK LS   F  +R+KL +V  P
Sbjct: 1382 VLTKALSPTRFCELRSKLQVVESP 1405


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  555 bits (1430), Expect = 0.0
 Identities = 281/534 (52%), Positives = 373/534 (69%), Gaps = 5/534 (0%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            M TRSK+G   P+I         EPKT K+AL  P W  AM+QEY+AL+ N+TW L +LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
             D++ +GC+WV++ K NADG++ K KARLVAKG+ Q  GFD+ ETFSPV++P ++R+IL+
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            LAL+  W + QLDV+NAFLNG L+  IYM QPPGFE   DKSLVC+L+K+LYGLKQA R 
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAG-DKSLVCKLNKALYGLKQAPRQ 179

Query: 624  WCSKLGNILQMLGFSVSKADPSIF-YKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQ 800
            W +KL   L   GF  SK DPS+F Y+H   + ++FIL YVDD+I+TG++   IQ +  Q
Sbjct: 180  WFNKLKLTLTRFGFQASKCDPSLFQYQH--QTHTIFILVYVDDIIITGSSSLLIQQITNQ 237

Query: 801  LKQHFSIKDLGDLHYFLGIEFKH-TSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNP 977
            L   FS+K LG L YFLGIE KH     + L+Q KYI+DLL K  +  A  + +PM  N 
Sbjct: 238  LDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNC 297

Query: 978  PLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILR 1157
             LS+       D + +RS+VG L Y T+TRPEIS++VNKV QFM  PLD+HW AVKRIL+
Sbjct: 298  KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 357

Query: 1158 YLAGTVHLGLHF---IQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQ 1328
            YL GT+  GLH      +  + LT FCDADW SD+DDRRSTSG  +F G NL+SW S+KQ
Sbjct: 358  YLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQ 417

Query: 1329 ALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHS 1508
             +++RSSTEAEYRS+A    +L W+ +L +EL +P   +P +  DNQSA+++A NP+ HS
Sbjct: 418  RVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFS-TPTLLCDNQSAVAIAHNPVFHS 476

Query: 1509 RTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHI 1670
            +TKH E+D+ FVR+KVL+  + V H+P+LDQ AD+ TKPLS   F  + +KL +
Sbjct: 477  KTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLWDKLKV 530


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  553 bits (1426), Expect = 0.0
 Identities = 286/541 (52%), Positives = 374/541 (69%), Gaps = 7/541 (1%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            M TR+KAGI KP++         EPK+ K+AL    W  AMKQEY+AL+ N TWTL +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
            P+K  IGC+WV++ K N DGT++KYKARLVAKG+ Q  G DY ETFSPVV+P ++R+IL+
Sbjct: 61   PNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            LAL+  W I+QLDV+N FLNG+L+ ++YM QPPGFE   DK+LV ++ K +YGLKQA RA
Sbjct: 121  LALTHHWSIQQLDVNNTFLNGNLEEEVYMSQPPGFESS-DKALVYKIHKEIYGLKQAPRA 179

Query: 624  WCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQL 803
            W  KL   L  L F +SK +PS+F   +G +  ++IL YVDD+I+TG N + ++S++ QL
Sbjct: 180  WFDKLKATLFQLNFQISKCNPSLFVYSHG-NHVIYILVYVDDIIITGNNSSILRSIIAQL 238

Query: 804  KQHFSIKDLGDLHYFLGIEFKHTSSGM-FLSQRKYIQDLLSKAGMQGAKSSTTPMVGNPP 980
               FS+KDLG L +FLGIE K    G   L+Q KYI+DLL++  M+ +   ++PMV    
Sbjct: 239  NSAFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSPMVSGCK 298

Query: 981  LSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILRY 1160
            LSK   +   D +LYRS+VG L Y TITRP+IS+SVNKV QFM  PL+ HW A+KRILRY
Sbjct: 299  LSKTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAIKRILRY 358

Query: 1161 LAGTVHLGLHFIQSDS---LVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQA 1331
            L GT+  GLH   + S   L +  + DADW SD DD RSTSG  +F+G NL+SW SKKQ 
Sbjct: 359  LKGTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISWWSKKQT 418

Query: 1332 LVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHSR 1511
            +V+RSS EAEYRSLA    + +W+ +L  ELH+    +P+V+ DN S +SLA N + H+R
Sbjct: 419  VVARSSAEAEYRSLALATAEALWIQTLLSELHVS-HHTPVVYCDNMSTVSLAHNHVLHAR 477

Query: 1512 TKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIV---PDP 1682
            TKH E+DL FVREKV  N + V HVP++DQ ADI TK LS   F  +R KL +V   P P
Sbjct: 478  TKHMEMDLFFVREKVSANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDSSPHP 537

Query: 1683 T 1685
            T
Sbjct: 538  T 538


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  546 bits (1407), Expect = 0.0
 Identities = 274/543 (50%), Positives = 376/543 (69%), Gaps = 1/543 (0%)
 Frame = +3

Query: 84   MVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCALP 263
            MVTR+KAGIFKPK+   +T    EP    +AL   +WK+AM+ EYDAL+KN TW L +LP
Sbjct: 1    MVTRAKAGIFKPKVYLATT----EPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLP 56

Query: 264  PDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVILS 443
            PD++ I C+W++K K + DG++ ++KARLVA+G+ Q PG DY +TFSPVVRP S+RV+L+
Sbjct: 57   PDRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLA 116

Query: 444  LALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQASRA 623
            +A+SKGW I Q+DVDNAFLNGDL  +IYM QP GF Q    + VC+L K++YGLKQA RA
Sbjct: 117  IAVSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGFHQG-SPNTVCKLRKAIYGLKQAPRA 175

Query: 624  WCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEIQSLVEQL 803
            W  KL   L  LGF  +K+D S+F      ++S++IL YVDD+I+T  + T I+ L++ L
Sbjct: 176  WFQKLTLTLFRLGFIQAKSDNSLFIST-SRTTSIYILVYVDDVIITSNSATAIRGLIQAL 234

Query: 804  KQHFSIKDLGDLHYFLGIEF-KHTSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNPP 980
             Q+F +KDLG LH+FLGIE     + G+ LSQ +Y+ D+L +  M  A+   TPM     
Sbjct: 235  HQYFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPASK 294

Query: 981  LSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILRY 1160
            L+    +   D S YRSIVG L Y+TITRP+I+Y+VNK+ QFM  PLD HWKA KR+LRY
Sbjct: 295  LTNDGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLLRY 354

Query: 1161 LAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQALVS 1340
            L GT+H GLH+ +     +  +CD+DW SD +D RSTSG CV++G N+VSW +KKQ +VS
Sbjct: 355  LKGTLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKVVS 414

Query: 1341 RSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHSRTKH 1520
            RSSTEAE+RS+A  V ++ ++ +L  EL    +  P++W DNQ A+ L+ NP+ H+RTKH
Sbjct: 415  RSSTEAEFRSMASLVAEIQYVQNLLSELGHINKNQPLIWCDNQGAVLLSLNPVLHTRTKH 474

Query: 1521 FELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIVPDPTSN*GG 1700
            FELDL F+RE+V    I V+H+P+  Q AD+ TK  S   F+ +R+KL +    T +  G
Sbjct: 475  FELDLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLSLRG 534

Query: 1701 IKD 1709
             K+
Sbjct: 535  GKE 537


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  562 bits (1449), Expect = 0.0
 Identities = 284/536 (52%), Positives = 375/536 (69%), Gaps = 5/536 (0%)
 Frame = +3

Query: 78   HHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCA 257
            H M TRSK+G   P+I         EPKT K+AL  P W  AM+QEY+AL+ N+TW L +
Sbjct: 739  HPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVS 798

Query: 258  LPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVI 437
            LP D++ +GC+WV++ K NADG++ K KARLVAKG+ Q  GFD+ ETFSPV++P ++R+I
Sbjct: 799  LPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRII 858

Query: 438  LSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQAS 617
            L+LAL+  W + QLDV+NAFLNG L+  IYM QPPGFE   DKSLVC+L+K+LYGLKQA 
Sbjct: 859  LTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAG-DKSLVCKLNKALYGLKQAP 917

Query: 618  RAWCSKLGNILQMLGFSVSKADPSIF-YKHYGASSSMFILTYVDDMIVTGTNETEIQSLV 794
            R W +KL   L   GF  SK DPS+F Y+H   + ++FIL YVDD+I+TG++   IQ + 
Sbjct: 918  RQWFNKLKLTLTRFGFQASKCDPSLFQYQH--QTHTIFILVYVDDIIITGSSSLLIQQIT 975

Query: 795  EQLKQHFSIKDLGDLHYFLGIEFKH-TSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVG 971
             QL   FS+K LG L YFLGIE KH     + L+Q KYI+DLL K  +  A  + +PM  
Sbjct: 976  NQLDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFS 1035

Query: 972  NPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRI 1151
            N  LS+       D + +RS+VG L Y T+TRPEIS++VNKV QFM  PLD+HW AVKRI
Sbjct: 1036 NCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRI 1095

Query: 1152 LRYLAGTVHLGLHF---IQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSK 1322
            L+YL GT+  GLH      +  + LT FCDADW SD+DDRRSTSG  +F G NL+SW S+
Sbjct: 1096 LKYLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSR 1155

Query: 1323 KQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIH 1502
            KQ +++RSSTEAEYRS+A    +L W+ +L +EL +P   +P +  DNQSA+++A NP+ 
Sbjct: 1156 KQRVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFS-TPTLLCDNQSAVAIAHNPVF 1214

Query: 1503 HSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHI 1670
            HS+TKH E+D+ FVR+KVL+  + V H+P+LDQ AD+ TKPLS   F  +RNKL +
Sbjct: 1215 HSKTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLRNKLKV 1270


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score =  562 bits (1449), Expect = 0.0
 Identities = 284/536 (52%), Positives = 375/536 (69%), Gaps = 5/536 (0%)
 Frame = +3

Query: 78   HHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCA 257
            H M TRSK+G   P+I         EPKT K+AL  P W  AM+QEY+AL+ N+TW L +
Sbjct: 818  HPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVS 877

Query: 258  LPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVI 437
            LP D++ +GC+WV++ K NADG++ K KARLVAKG+ Q  GFD+ ETFSPV++P ++R+I
Sbjct: 878  LPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRII 937

Query: 438  LSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQAS 617
            L+LAL+  W + QLDV+NAFLNG L+  IYM QPPGFE   DKSLVC+L+K+LYGLKQA 
Sbjct: 938  LTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAG-DKSLVCKLNKALYGLKQAP 996

Query: 618  RAWCSKLGNILQMLGFSVSKADPSIF-YKHYGASSSMFILTYVDDMIVTGTNETEIQSLV 794
            R W +KL   L   GF  SK DPS+F Y+H   + ++FIL YVDD+I+TG++   IQ + 
Sbjct: 997  RQWFNKLKLTLTRFGFQASKCDPSLFQYQH--QTHTIFILVYVDDIIITGSSSLLIQQIT 1054

Query: 795  EQLKQHFSIKDLGDLHYFLGIEFKH-TSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVG 971
             QL   FS+K LG L YFLGIE KH     + L+Q KYI+DLL K  +  A  + +PM  
Sbjct: 1055 NQLDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFS 1114

Query: 972  NPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRI 1151
            N  LS+       D + +RS+VG L Y T+TRPEIS++VNKV QFM  PLD+HW AVKRI
Sbjct: 1115 NCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRI 1174

Query: 1152 LRYLAGTVHLGLHF---IQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSK 1322
            L+YL GT+  GLH      +  + LT FCDADW SD+DDRRSTSG  +F G NL+SW S+
Sbjct: 1175 LKYLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSR 1234

Query: 1323 KQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIH 1502
            KQ +++RSSTEAEYRS+A    +L W+ +L +EL +P   +P +  DNQSA+++A NP+ 
Sbjct: 1235 KQRVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFS-TPTLLCDNQSAVAIAHNPVF 1293

Query: 1503 HSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHI 1670
            HS+TKH E+D+ FVR+KVL+  + V H+P+LDQ AD+ TKPLS   F  +RNKL +
Sbjct: 1294 HSKTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLRNKLKV 1349


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  564 bits (1453), Expect = 0.0
 Identities = 291/558 (52%), Positives = 378/558 (67%), Gaps = 6/558 (1%)
 Frame = +3

Query: 18   SFSPDTDVATNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWK 197
            +  P++   ++P   +N   HHM+TRSK G  KP +         EP T ++AL    W 
Sbjct: 872  TIDPNSTPTSSPSPTTNT--HHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWT 929

Query: 198  EAMKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSP 377
            EAM+QEY AL  N TW+L  LPP K+ IGC+W+++ K N DGT++KYKARLVAKG+ Q  
Sbjct: 930  EAMQQEYQALQANKTWSLVPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKY 989

Query: 378  GFDYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQH 557
            G DY +T+SPVV+P +VR +L++AL+  W + QLDV+NAFLNG L  D+YM+QP GF Q 
Sbjct: 990  GQDYSDTYSPVVKPITVRTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQG 1049

Query: 558  LDKSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPS--IFYKHYGASSSMFI 731
             + +LVC+L K++YGLKQA RAW   L N L   GF  SK DPS  IF KH      + I
Sbjct: 1050 -ESTLVCKLHKAIYGLKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKH---GCCLLI 1105

Query: 732  LTYVDDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYI 908
            L YVDD+I+TG++ T I  +V +L   FS+K LG L YFLGIE K T SG + LSQ KYI
Sbjct: 1106 LIYVDDIIITGSSNTAINLIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYI 1165

Query: 909  QDLLSKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSV 1088
            +D+L +AGM+  K  +TP+  N  LSK    P  + +LYRSIVG L Y TITRPE+ YSV
Sbjct: 1166 RDILHRAGMEDCKGISTPLPANLKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSV 1225

Query: 1089 NKVSQFMQFPLDTHWKAVKRILRYLAGTVHLGLHFI---QSDSLVLTTFCDADWGSDLDD 1259
            +KV QF   PL +HW AVKRILRYL G++  GL  +    S  L +  FCDADW SD+DD
Sbjct: 1226 SKVCQFFAQPLVSHWSAVKRILRYLKGSIDHGLTLLPATTSAPLSINAFCDADWASDIDD 1285

Query: 1260 RRSTSGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQ 1439
            RRSTSG C+F G NLVSW SKKQ LV++SS EAEYRSLA+   +++WL SL  EL +P+ 
Sbjct: 1286 RRSTSGACIFFGPNLVSWWSKKQTLVAKSSAEAEYRSLAHAASEVLWLQSLLHELKVPIP 1345

Query: 1440 RSPIVWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFT 1619
              P+++ DNQSA++++ NP+ HSRTKH ELD+ FVREKVLN  + V ++P+  Q ADI T
Sbjct: 1346 -PPVIYCDNQSAVAISHNPVLHSRTKHMELDIFFVREKVLNKSLVVSYIPAQLQVADILT 1404

Query: 1620 KPLSGQFFIRMRNKLHIV 1673
            K LS   F   R+KL ++
Sbjct: 1405 KSLSKHLFYNFRSKLRVL 1422


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  544 bits (1402), Expect = 0.0
 Identities = 273/537 (50%), Positives = 366/537 (68%)
 Frame = +3

Query: 78   HHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEAMKQEYDALVKNNTWTLCA 257
            H MVTR+K+GI K +   V      EP+TY +A     W +AM  EY AL++NNTW+L  
Sbjct: 182  HPMVTRAKSGIHKKRSFIVQHTT--EPRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLVP 239

Query: 258  LPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGFDYQETFSPVVRPTSVRVI 437
             P    ++GCRW+YK K   DG++ ++KARLVA+G+TQ+PG DY +TFSPVV+P ++R+I
Sbjct: 240  PPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLI 299

Query: 438  LSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLDKSLVCRLSKSLYGLKQAS 617
            L+LA+S  W ++QLDV+N FLNGDL+ +++M QP GF      + VC+L K+LYGLKQA 
Sbjct: 300  LALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAP 359

Query: 618  RAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYVDDMIVTGTNETEIQSLVE 797
            RAW  KL   L   GF  S+AD S+F  H  A+  + +L YVDD++VTG+N T +   + 
Sbjct: 360  RAWFQKLRIALLDYGFQSSRADTSLFIFHT-ATDILILLVYVDDILVTGSNPTLVSHFIS 418

Query: 798  QLKQHFSIKDLGDLHYFLGIEFKHTSSGMFLSQRKYIQDLLSKAGMQGAKSSTTPMVGNP 977
             L+  F+++DLG L YFLGI+ +   S + L+Q KYI DLL++  M+ +K + TP     
Sbjct: 419  YLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGR 478

Query: 978  PLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVSQFMQFPLDTHWKAVKRILR 1157
             LS+ +G  ++D S YR  VG L YVT+TRP+I+++VNK  QFM  P D HW AVKRILR
Sbjct: 479  TLSQSDGVSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILR 538

Query: 1158 YLAGTVHLGLHFIQSDSLVLTTFCDADWGSDLDDRRSTSGFCVFMGKNLVSWSSKKQALV 1337
            YL GT+HLGLHF  + S+    + DADW S  DDRRSTSG+CVF+G NL+SWSS KQ LV
Sbjct: 539  YLKGTIHLGLHFQPAASMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLV 598

Query: 1338 SRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPIVWIDNQSAISLAKNPIHHSRTK 1517
            S+SS E+EYR L     +L+W+ SL +EL +P    PI+W DNQSA  LA NP+ HSR+K
Sbjct: 599  SKSSAESEYRGLVSLTAELVWIQSLLQELCLPTS-PPILWCDNQSAAHLAANPVFHSRSK 657

Query: 1518 HFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLSGQFFIRMRNKLHIVPDPTS 1688
            H ELDLHF+REKVL   +++ +VPS DQ ADIFTK L    F  +R+KL +   P S
Sbjct: 658  HIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPPLS 714


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  563 bits (1450), Expect = 0.0
 Identities = 294/558 (52%), Positives = 388/558 (69%), Gaps = 4/558 (0%)
 Frame = +3

Query: 24   SPDTDVATNPLNESNAAGHHMVTRSKAGIFKPKILNVSTNILQEPKTYKEALIIPEWKEA 203
            SP    ++  L+      H M+TRSK GI +P++         EPKT K AL  P W  A
Sbjct: 849  SPPASSSSPSLSAPPLNIHPMITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSA 908

Query: 204  MKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGF 383
            M+ E  AL  N+TWTL  LPP ++ IGC+WV++ K N DG+++KYKARLVAKG+ Q PG 
Sbjct: 909  MQAELTALHDNHTWTLVDLPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGV 968

Query: 384  DYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLD 563
            D+ ETFSPVV+P ++R++LSLA++  W ++QLD++NAFLNG L+ DIYM QPPGF +   
Sbjct: 969  DFSETFSPVVKPVTIRIVLSLAVTFQWPLRQLDINNAFLNGMLEEDIYMSQPPGFIEPNS 1028

Query: 564  KSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYV 743
            K LVC+L KSLYGLKQA RAW  +L ++L  LGF  SK DPS+F      S+ +++L YV
Sbjct: 1029 KHLVCKLHKSLYGLKQAPRAWFDRLTSVLLKLGFHKSKCDPSLFI-FSTPSAIVYMLIYV 1087

Query: 744  DDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLL 920
            DD+I+TG + + +Q  +  L   FS+KDLG L YFLGIE K  S+G + LSQ KYI DLL
Sbjct: 1088 DDIILTGNSSSLMQQFINHLHATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLL 1147

Query: 921  SKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVS 1100
            +K  M+ +K  +TPM+G   L+K  G    D +LYRS+VG L Y TITRPEI++SVNKVS
Sbjct: 1148 TKVKMEDSKGISTPMIGGQQLAK-TGTLFNDPTLYRSVVGALQYATITRPEIAFSVNKVS 1206

Query: 1101 QFMQFPLDTHWKAVKRILRYLAGTVHLGLHFI---QSDSLVLTTFCDADWGSDLDDRRST 1271
            QFM  P++ HWK VKRILRYL GT+  GL F     S S  LT F DADW +D +DRRST
Sbjct: 1207 QFMCSPMEEHWKVVKRILRYLKGTLKHGLVFTPARSSSSFNLTAFTDADWAADPNDRRST 1266

Query: 1272 SGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPI 1451
            S  C+++G NLVSW SKKQ LV+RSSTEAEYR+LA  V +++W+ SL +EL I    +P+
Sbjct: 1267 SAACIYLGPNLVSWWSKKQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRF-NTPM 1325

Query: 1452 VWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLS 1631
            V  DNQS ++L+ NP+ HSR+KH ELD+ FVREKV++  + V H+PS  Q AD+ TK LS
Sbjct: 1326 VLCDNQSTVALSHNPVLHSRSKHMELDIFFVREKVISKALVVSHIPSQHQYADLLTKALS 1385

Query: 1632 GQFFIRMRNKLHIVPDPT 1685
             + F+ +R+KL+ V DP+
Sbjct: 1386 PKRFLSLRSKLN-VADPS 1402


>gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 490

 Score =  527 bits (1357), Expect = e-180
 Identities = 268/501 (53%), Positives = 352/501 (70%), Gaps = 7/501 (1%)
 Frame = +3

Query: 204  MKQEYDALVKNNTWTLCALPPDKQLIGCRWVYKTKTNADGTLSKYKARLVAKGYTQSPGF 383
            MKQEY+AL+ N TWTL +LP ++   GC+WV++ K N D  + KYKARLVAKG+    GF
Sbjct: 1    MKQEYNALMDNGTWTLVSLPSNRIAFGCKWVFRVKENPDDIVHKYKARLVAKGFHHQFGF 60

Query: 384  DYQETFSPVVRPTSVRVILSLALSKGWKIKQLDVDNAFLNGDLDTDIYMEQPPGFEQHLD 563
            DY ETFSPVV+P ++R IL+LAL+  W I+QLDV+NAFLN +L+ ++YM QPPGFE   D
Sbjct: 61   DYNETFSPVVKPVTIRFILTLALTHHWSIQQLDVNNAFLNENLEEEVYMSQPPGFESS-D 119

Query: 564  KSLVCRLSKSLYGLKQASRAWCSKLGNILQMLGFSVSKADPSIFYKHYGASSSMFILTYV 743
            K+LV +L K++YGLKQA  AW  KL   L  L F +SK DPS+F   +G ++ ++IL YV
Sbjct: 120  KTLVYKLHKAIYGLKQAPHAWFDKLKATLFQLNFQISKCDPSLFVYSHG-NTVIYILVYV 178

Query: 744  DDMIVTGTNETEIQSLVEQLKQHFSIKDLGDLHYFLGIEFKHTSSG-MFLSQRKYIQDLL 920
            DD+I+TG N + +QS++ QL   FS+KDLG L YFLGIE K    G + L+Q KYI+DLL
Sbjct: 179  DDIIITGNNSSVLQSIISQLNSAFSLKDLGRLDYFLGIEVKSNFDGSLTLTQSKYIRDLL 238

Query: 921  SKAGMQGAKSSTTPMVGNPPLSKFNGQPIADASLYRSIVGGLHYVTITRPEISYSVNKVS 1100
            ++  M+ + S ++PMV        + +   D SLYRS+VG L Y TITRP+IS+SVNKV 
Sbjct: 239  NRTNMENSNSISSPMV--------SSEKFLDVSLYRSVVGALQYATITRPKISFSVNKVC 290

Query: 1101 QFMQFPLDTHWKAVKRILRYLAGTVHLGLHFIQS---DSLVLTTFCDADWGSDLDDRRST 1271
            QFM  PL+ HW A+KRILRYL GT+ LGLH   +     L +  +CDADW SD DD++ST
Sbjct: 291  QFMSNPLEQHWSAIKRILRYLQGTMFLGLHLHPTPYDSPLSIHAYCDADWASDPDDQKST 350

Query: 1272 SGFCVFMGKNLVSWSSKKQALVSRSSTEAEYRSLAYTVCDLIWLLSLFKELHIPLQRSPI 1451
            S   +F+G NL+SW SKKQ +V+RSSTE EYRSLA    +++W+ +L  ELH+    SP+
Sbjct: 351  SSAAIFVGPNLISWWSKKQTVVARSSTEIEYRSLALATAEVMWIQTLLSELHVS-HHSPV 409

Query: 1452 VWIDNQSAISLAKNPIHHSRTKHFELDLHFVREKVLNNLIRVQHVPSLDQAADIFTKPLS 1631
            V+ DN S ++LA NP+ H+RTKH ELDL FVREKV  NL+ V HVP++DQ ADI TK LS
Sbjct: 410  VYCDNMSTVALAHNPVLHARTKHIELDLFFVREKVAANLLHVVHVPAIDQYADILTKALS 469

Query: 1632 GQFFIRMRNKLHIV---PDPT 1685
              +F  +R KL +V   P PT
Sbjct: 470  PSWFCELRTKLKLVDSSPHPT 490