BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00016726
         (2947 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   901   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           879   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   877   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   876   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   874   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     852   0.0  
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   851   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        849   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     844   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     843   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   872   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   851   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   837   0.0  
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   823   0.0  
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   834   0.0  
gb|KYP59064.1| Retrovirus-related Pol polyprotein from transposo...   811   0.0  
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]   808   0.0  
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   811   0.0  
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   808   0.0  
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   804   0.0  

>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  901 bits (2329), Expect = 0.0
 Identities = 465/991 (46%), Positives = 647/991 (65%), Gaps = 11/991 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M ND +C++ G+GT+ +K   G + TL++VR +PDL  NLIS   LE  G +     G++
Sbjct: 21   MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 80

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            K+ KG++++ KA +  +LY+                          D T+LWH RLGH+S
Sbjct: 81   KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDK-------DATKLWHMRLGHMS 133

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADVW 544
             KG+ LL K+G  GN  +  + FC+ C++GKQ+RVSF T+++  + +    L+Y+H+D+W
Sbjct: 134  EKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGT----LDYIHSDLW 189

Query: 545  GPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLRT 724
            GP+ VP++GG RY +++IDDFSRKV+V+ +++K++ F   + WKTL+E QTGKK+K LRT
Sbjct: 190  GPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRT 249

Query: 725  DNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGL--SK 898
            DNGLEFC    ++ C + GI RHK++P  PQQNGVAER+NRT+LER R MLS +GL   +
Sbjct: 250  DNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQR 309

Query: 899  KFWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPR 1078
            + W EA  TA Y+INRSP   L  K PE++WSG P+D+SNL+IFGC A+ H    KL PR
Sbjct: 310  ELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPIDYSNLRIFGCPAYAHVNDGKLAPR 369

Query: 1079 SLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPN 1258
            ++KC+FLGY    KGYRLW       ++++SRDV FNE+    L   K  S + +ST   
Sbjct: 370  AIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDAL--LSSGKQSSVSSSSTN-- 425

Query: 1259 KVELSNVPSISVNDNSDMIDAEHDPVNAN-DVHNDIENDNAELNDNEHDEFPLVDTELNH 1435
                      ++   S+ ++ E   V  N DV +    +++   D+  D+ P+   E   
Sbjct: 426  ----------NLQGTSEKVELELKSVAPNVDVPSSSTTESSI--DDHGDDHPIQQQE--- 470

Query: 1436 ENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENS-EPKTYIDAVNSV 1612
                     +Y + RDRTRR I++P ++ D +LT+Y  S+ + + +  EP +Y +AV+ V
Sbjct: 471  ---------EYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCV 521

Query: 1613 NSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV---RYKARLVA 1783
            +S KWL AM +E+ SL+ NNTW L   P     + CKW++K K    GV   R KARLV 
Sbjct: 522  DSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVV 581

Query: 1784 KGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQ 1963
            KGF QKEGID+ EIF+PVV+  ++RI+LA VA FD EL+QLDVKTAFLHG+LEE+I+M Q
Sbjct: 582  KGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQ 641

Query: 1964 PEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFK-LDAM 2140
            PEGF   SK + VC LKKSLYGLKQ+PRQW KKFD  M+   + RSK+D C+YF+     
Sbjct: 642  PEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDG 701

Query: 2141 SPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYL 2320
            + ++LL+YVDDML+       I  +K  L+ +F+MK LG AKKILGM I RDR    L+L
Sbjct: 702  TFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFL 761

Query: 2321 HQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMY 2500
             Q  Y+E++L +F+M N K V+ PLAAHF LS D  P+T  E+  M ++PYA+A+GS+MY
Sbjct: 762  SQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMY 821

Query: 2501 LMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSK---CENGVVL 2671
             MV TRPD+AYAVS +SR+M NPG  HW+A+KW+ RYL+ +++  L F +     N V  
Sbjct: 822  AMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVA- 880

Query: 2672 KGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEAL 2851
             G+VDS+Y  D D R+S + Y+FTLC S ISWK+ LQ I ALSTTE+EYV+ TE +KEAL
Sbjct: 881  -GFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEAL 939

Query: 2852 WLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            W++GLV E+G  +  + VF DSQS I L KN
Sbjct: 940  WIRGLVKELGLTQDVLTVFCDSQSAIHLTKN 970


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  879 bits (2270), Expect = 0.0
 Identities = 460/991 (46%), Positives = 640/991 (64%), Gaps = 11/991 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C ++G+G+V +K D G   TL +VR++P +S NLIS + L+ +GY+     G++
Sbjct: 323  MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 382

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+  K +     LYV                           KT LWH RLGH+
Sbjct: 383  KVSKGSLVCLKGDLNSAKLYVLRG-----CTLPGSDSAAAAVTNDEPSKTNLWHMRLGHM 437

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K         + + FC+ CI+GK +RV F TS +  + +    L+Y+HAD+
Sbjct: 438  SHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADL 493

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L++IDD+SRKV+ + +K+K D F   +NWK +IE QT +K+K L 
Sbjct: 494  WGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLC 553

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG EFC+   +  C   GIVRH ++P+TPQQNGVAERMNRT++ R R MLS + ++K+
Sbjct: 554  TDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKR 613

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA  TA Y+INRSPS+PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR+
Sbjct: 614  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 673

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNE-----NEFPCLDVSKNVSETQNS 1246
            +KC+FLGY  GVKGY+LW+  E G K  +SR VVFNE     N  P    S++V E +  
Sbjct: 674  VKCLFLGYGSGVKGYKLWNP-ETG-KTFMSRSVVFNESVMFTNSLP----SEHVPEKELQ 727

Query: 1247 TTPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTE 1426
                +VE        V+D++ +   + +PV+  D HN   ND A+  D+ HD+       
Sbjct: 728  RMHMQVE-------HVDDDTGV---QVEPVDEQDDHN---NDVAD--DDAHDDVQQTPPI 772

Query: 1427 LNHENAENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIEN-SEPKTYIDA 1600
            L  E        D  + + +++R  + P +  +  +L+ Y  S  E +EN  EP TY +A
Sbjct: 773  LQLEE-------DLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEA 825

Query: 1601 VNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQE---NEGVRYKA 1771
            V   +S  W+SAM +EM SL  N+TWE+VP P     + CKW+FK K+    +E  +YKA
Sbjct: 826  VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKA 885

Query: 1772 RLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQI 1951
            RLVA+G++Q  G+DY ++F+PVVK  ++R  L++VA  D EL+QLDVKTAFLHG+LEE I
Sbjct: 886  RLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDI 945

Query: 1952 FMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKL 2131
            +M QPEGF    K  +VC LK+SLYGLKQSPRQWNK+FD  ML   F RSK+D C+Y K 
Sbjct: 946  YMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKH 1005

Query: 2132 DAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 2311
               SP++LL+YVDDML+       I  +K  LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1006 VNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1065

Query: 2312 LYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGS 2491
            L+L Q +Y++K+LQ+F+M NAK+V+ P+A HF LS  Q P TD EI  M  +PY++A+GS
Sbjct: 1066 LFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGS 1125

Query: 2492 VMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVL 2671
            +MY MV +RPD++YA+S +SR+MSNPG  HW AL+W+ RYLR +T  CLKF + + G++ 
Sbjct: 1126 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGLI- 1184

Query: 2672 KGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEAL 2851
             GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+A+ EA KE +
Sbjct: 1185 -GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELI 1243

Query: 2852 WLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            WLKGL +E+  ++  + +  DSQS I L K+
Sbjct: 1244 WLKGLYAELSGVESCISLHCDSQSAIYLTKD 1274


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  877 bits (2267), Expect = 0.0
 Identities = 459/991 (46%), Positives = 640/991 (64%), Gaps = 11/991 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C ++G+G+V +K D G   TL +VR++P +S NLIS + L+ +GY+     G++
Sbjct: 321  MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+  K +     LYV                           KT LWH RLGH+
Sbjct: 381  KVSKGSLVCLKGDLNSAKLYVLRG-----CTLTGSDSAAAAVTNDEPSKTNLWHMRLGHM 435

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K         + + FC+ CI+GK +RV F TS +  + +    L+Y+HAD+
Sbjct: 436  SHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADL 491

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L+VIDD+SRKV+ + +K+K D F   +NWK +IE QT +K+K LR
Sbjct: 492  WGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLR 551

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG EFC+   +  C   GIVRH ++P+TPQQNGVAERMNRT++ R R MLS + ++K+
Sbjct: 552  TDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA  TA Y+INRSPS+PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR+
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRA 671

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNE-----NEFPCLDVSKNVSETQNS 1246
            +KC+FLGY  GVKGY+LW+  E G K  +SR VVFNE     N  P    S++V E +  
Sbjct: 672  VKCLFLGYGSGVKGYKLWNP-ETG-KTFMSRSVVFNESVMFTNSLP----SEHVPEKELQ 725

Query: 1247 TTPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTE 1426
                +VE        V+D++ +   + +PV+  D HN   ND A+  D+ HD+       
Sbjct: 726  RMHMQVE-------HVDDDTGV---QVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPI 770

Query: 1427 LNHENAENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIEN-SEPKTYIDA 1600
            L  E        +  + + +++R  + P +  +  +L+ Y  S  E +EN  EP TY +A
Sbjct: 771  LQLEE-------ELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEA 823

Query: 1601 VNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKA 1771
            V   +S  W+SAM +EM SL  N+TWE+VP P     + CKW+FK K+    +E  +YKA
Sbjct: 824  VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883

Query: 1772 RLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQI 1951
            RLVA+G++Q  G+DY ++F+PVVK  ++R  L++VA  D EL+QLDVKTAFLHG+LEE I
Sbjct: 884  RLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDI 943

Query: 1952 FMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKL 2131
            +M QPEGF    K  +VC LK+SLYGLKQSPRQWNK+FD  ML   F RSK+D C+Y K 
Sbjct: 944  YMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKH 1003

Query: 2132 DAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 2311
               SP++LL+YVDDML+       I  +K  LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1004 VNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063

Query: 2312 LYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGS 2491
            L+L Q +Y++K+LQ+F+M NAK+V+ P+A HF LS  Q P  D EI  M  +PY++A+GS
Sbjct: 1064 LFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGS 1123

Query: 2492 VMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVL 2671
            +MY MV +RPD++YA+S +SR+MSNPG  HW A++W+ RYLR +T  CLKF + + G++ 
Sbjct: 1124 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLI- 1182

Query: 2672 KGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEAL 2851
             GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+A+ EA KE +
Sbjct: 1183 -GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELI 1241

Query: 2852 WLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            WLKGL +E+  ++  + +  DSQS I L K+
Sbjct: 1242 WLKGLYAELSGVESCISLHCDSQSAIYLTKD 1272


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  876 bits (2263), Expect = 0.0
 Identities = 457/991 (46%), Positives = 640/991 (64%), Gaps = 11/991 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C ++G+G+V +K D G   TL +VR++P +S NLIS + L+ +GY+     G++
Sbjct: 321  MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+  K +     LYV                           KT LWH RLGH+
Sbjct: 381  KVSKGSLVCLKGDVNSAKLYVLRG-----CTLTGSDSAAAAITNDEPSKTNLWHMRLGHM 435

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K         + + FC+ CI+GK +RV F TS +  + +    L+Y+HAD+
Sbjct: 436  SHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADL 491

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L++IDD+SRKV+ + +K+K D F   +NWK +IE QT +K+K LR
Sbjct: 492  WGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLR 551

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG EFC+   +  C   GIVRH ++P+TPQQNGVAERMNRT++ R R MLS + ++K+
Sbjct: 552  TDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA  TA Y+INRSPS+PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR+
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNE-----NEFPCLDVSKNVSETQNS 1246
            +KC+FLGY  GVKGY+LW+  E G K  +SR VVFNE     N  P    S++V E +  
Sbjct: 672  VKCLFLGYGSGVKGYKLWNP-ETG-KTFMSRSVVFNESVMFTNSLP----SEHVPEKELQ 725

Query: 1247 TTPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTE 1426
                +VE        V+D++ +   + +PV+  D HN   ND A+  D+ HD+       
Sbjct: 726  RMHMQVE-------HVDDDTGV---QVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPI 770

Query: 1427 LNHENAENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIEN-SEPKTYIDA 1600
            L  E        +  + + +++R  + P +  +  +L+ Y  S  E +EN  EP TY +A
Sbjct: 771  LQLEE-------ELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEA 823

Query: 1601 VNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKA 1771
            V   +S  W+SAM +EM SL  N+TWE+VP P     + CKW+FK K+    +E  +YKA
Sbjct: 824  VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883

Query: 1772 RLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQI 1951
            RLVA+G++Q  G+DY ++F+PVVK  ++R  L++VA  D EL+QLDVKTAFLHG+LEE I
Sbjct: 884  RLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDI 943

Query: 1952 FMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKL 2131
            +M QPEGF    K  +VC LK+SLYGLKQSPRQWNK+FD  ML   F RSK+D C+Y K 
Sbjct: 944  YMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKH 1003

Query: 2132 DAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 2311
               SP++LL+YVDDML+       I  +K  LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1004 VNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063

Query: 2312 LYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGS 2491
            L+L Q +Y++K+LQ+F+M NAK+V+ P+A HF LS  Q P  D EI  M  +PY++A+GS
Sbjct: 1064 LFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGS 1123

Query: 2492 VMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVL 2671
            +MY MV +RPD++YA+S +SR+MSNPG  HW A++W+ RYLR +T  CLKF + + G++ 
Sbjct: 1124 LMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLI- 1182

Query: 2672 KGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEAL 2851
             GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+A+ EA KE +
Sbjct: 1183 -GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELI 1241

Query: 2852 WLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            WLKGL +E+  ++  + +  DS+S I L K+
Sbjct: 1242 WLKGLYAELSGVESCISLHCDSESAIYLTKD 1272


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  874 bits (2258), Expect = 0.0
 Identities = 454/986 (46%), Positives = 633/986 (64%), Gaps = 6/986 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C ++G+G+V +K D G   TL +VR++P +S NLIS + L+ +GY+     G++
Sbjct: 321  MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+  K +     LYV                           KT LWH RLGH+
Sbjct: 381  KVSKGSLVCLKGDLNSAKLYVLRG-----CTLTGSDSAAAAVTNDEPSKTNLWHMRLGHM 435

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K         + + FC+ CI+GK +RV F TS +  + +    L+Y+HAD+
Sbjct: 436  SHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADL 491

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L++IDD+SRKV+ + +K+K D F   +NWK +IE QT +K+K LR
Sbjct: 492  WGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLR 551

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG EFC+   +  C   GIVRH ++P+TPQQNGVAERMNRT++ R R MLS + ++K+
Sbjct: 552  TDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA  TA Y+INRSPS+PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR+
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
            +KC+FLGY  GVKGY+LW+  E G K  +SR VVFNE+           +   +   P K
Sbjct: 672  VKCLFLGYGSGVKGYKLWNP-ETG-KTFMSRSVVFNESVM-------FTNSLPSEHVPEK 722

Query: 1262 VELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHEN 1441
             EL  +  + V    D    + +PV+  D HN   ND A+  D+ HD+       L  E 
Sbjct: 723  -ELQRM-HMQVEHVDDYTGVQVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPILQLEE 775

Query: 1442 AENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIEN-SEPKTYIDAVNSVN 1615
                   +  + + +++R  + P +  +  +L+ Y  S  E +EN  EP TY +AV   +
Sbjct: 776  -------ELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGD 828

Query: 1616 SVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAK 1786
            S  W+SAM +EM SL  N+TWE+VP P     + CKW+FK K+    +E  +YKARLVA+
Sbjct: 829  SENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVAR 888

Query: 1787 GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQP 1966
            G++Q  G+DY ++F+PVVK  ++R  L++VA  D EL+QLDVKTAFLHG+LEE I+M QP
Sbjct: 889  GYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQP 948

Query: 1967 EGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSP 2146
            EGF    K  +VC LK+SLYGLKQSPRQWNK+FD  ML   F RSK+D C+Y K    SP
Sbjct: 949  EGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP 1008

Query: 2147 VFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQ 2326
            ++LL+YVDDML+       I  +K  LS++FDMK LG AKKIL M I RDR + +L+L Q
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068

Query: 2327 SSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLM 2506
             +Y++K+LQ+F+M NAK+V+ P+A HF LS  Q P TD EI  M  +PY++A+GS+MY M
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAM 1128

Query: 2507 VSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVD 2686
            V +RPD++YA+S +SR+MSNPG  HW  ++W+ RYLR +T  CLKF + + G++  GYVD
Sbjct: 1129 VCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKGLI--GYVD 1186

Query: 2687 SNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGL 2866
            S+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+A+ EA KE +WLKGL
Sbjct: 1187 SDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGL 1246

Query: 2867 VSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             +E+  ++  + +  DSQS I L K+
Sbjct: 1247 YAELSGVESCISLHCDSQSAIYLTKD 1272


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  852 bits (2202), Expect = 0.0
 Identities = 447/986 (45%), Positives = 636/986 (64%), Gaps = 6/986 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C+V G+GTV +K+  G + TL DVRH+P+L  +LIS   L+  GY+   G G++
Sbjct: 239  MGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 298

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL++ KA+ K  NLY                           D T LWH RLGH+
Sbjct: 299  KVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS------DATNLWHMRLGHM 352

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  GL  L K G      +  + FC+ CI+GK +RV F TS++  +     IL+Y+H+D+
Sbjct: 353  SEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDL 408

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGPA   + GG RY ++++DD+SRKV+ + +K+K   F+  + WKT++E QT +K+K LR
Sbjct: 409  WGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILR 468

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG+E C+++    C   GIVRH +VP+TPQQNGVAERMNRT++ + R MLS + L K+
Sbjct: 469  TDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQ 528

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EAV TA Y+INRSPS  +  K P +VWSG P ++S+L++FGC+A+ H    KL+PR 
Sbjct: 529  FWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRV 588

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
            +KC+FLGY  GVKGY+LW       KV+ISR+VVF+E+       S NV           
Sbjct: 589  IKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKPSTNVP---------- 636

Query: 1262 VELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHEN 1441
            VE     S+ V     +I + H P    DV   I  D   + D+        D+ +  ++
Sbjct: 637  VESQEKVSVQVEH---LISSGHAP-EKEDVA--INQDAPVIEDS--------DSSIVQQS 682

Query: 1442 AENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIE-NSEPKTYIDAVNSVN 1615
             +        + +DR +RN + P ++ +  ++ +Y  SV E IE N+EP TY DA+ S +
Sbjct: 683  PKRS------IAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDD 736

Query: 1616 SVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAK 1786
              +W++AM DEM SL  N++WEL   P     + CKW+FK K+    ++  RYKARLVAK
Sbjct: 737  CNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAK 796

Query: 1787 GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQP 1966
            G++Q  GID+ ++F+PVVK  ++R +L++VA  D+EL+Q+DVKTAFLHG+LEE I+M+QP
Sbjct: 797  GYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQP 856

Query: 1967 EGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSP 2146
            EGF    K N VC LKKSLYGLKQSPRQW K+FD  ML  KF RS +D C+Y K+   S 
Sbjct: 857  EGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSA 916

Query: 2147 VFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQ 2326
            ++LL+YVDDML+       I  +K  LS++F+MK LG AKKILGM I R+R++  LYL Q
Sbjct: 917  IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 976

Query: 2327 SSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLM 2506
              Y+EK+L +F+M +AK V+  LAAHF LS D  P++  +I  M  +PY++A+ S+MY M
Sbjct: 977  KCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAM 1036

Query: 2507 VSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVD 2686
            V +RPD+++A+S +SR+M+NPG  HW A++W+ RYLR ++  CL+F +  +G+V  GYVD
Sbjct: 1037 VCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDGLV--GYVD 1094

Query: 2687 SNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGL 2866
            S++A D D R+S T YVFT+ G  +SWK+ LQ  VALSTTE+EY+A++EA KE +WL+GL
Sbjct: 1095 SDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGL 1154

Query: 2867 VSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             +E+  +   + +F DSQS I L K+
Sbjct: 1155 YTELCGVTSCINIFCDSQSAICLTKD 1180


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  851 bits (2199), Expect = 0.0
 Identities = 444/989 (44%), Positives = 633/989 (64%), Gaps = 9/989 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M ND    V G+G++ ++   G  + L DVR++P+++ NLIS   LE  G   +   G++
Sbjct: 315  MGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGIL 374

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            KI+KG   I K +K+  LY+ +                        D+T LWH RLGH+S
Sbjct: 375  KIVKGCSTILKGQKRDTLYILDGVTEEGESHSSAEVK---------DETALWHSRLGHMS 425

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADVW 544
             KG+E+L K+GC   + +  + FC+ C+YGKQ RVSF     P Q    + L Y+H+D+W
Sbjct: 426  QKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA----PAQHVTKEKLAYVHSDLW 481

Query: 545  GPASVPTHGGN-RYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            G    P   GN +YF+S +DD+SRKV+++ ++ K + FEK   WK ++ENQ+ +K+K LR
Sbjct: 482  GSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLR 541

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNGLE+CN   ++ C + GIVRHK+  YTPQQNG+AER+NRT++++VRSMLS SG+ KK
Sbjct: 542  TDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKK 601

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA  TA Y+INRSPS  +    PE+ W+G   D S+L+ FGC A++H    KL+PRS
Sbjct: 602  FWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRS 661

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
             K +F  YP+GVKGY++W   +   K +ISR+V+F E     +       ++QN+ + + 
Sbjct: 662  KKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQ----VMFKDLKGDSQNTISESD 715

Query: 1262 VELSNV-PSISVNDNSDMIDAEHD---PVNANDVHNDIENDNAELNDNEHDEFPLVDTEL 1429
            +E   V P ++  + +D   A  D   P  A   HN + N      D E +E        
Sbjct: 716  LEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESEE-------- 767

Query: 1430 NHENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNS 1609
              ++   ++L+ Y L RDR RR I+   K+ + ++  + +   E     EPK+Y +A+  
Sbjct: 768  -EDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAY-YSEDDGKPEPKSYQEALLD 825

Query: 1610 VNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV---RYKARLV 1780
             +  KW +AM++EM S+  N+TW+LV KP    ++ C+W+F  K    GV   R+ ARLV
Sbjct: 826  PDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLV 885

Query: 1781 AKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMK 1960
            AKGFTQKEG+DY EIF+PVVK V++R +L++V  ++ EL+Q+DVKTAFLHG LEE+I+M 
Sbjct: 886  AKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMA 945

Query: 1961 QPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYF-KLDA 2137
            QPEGFE K   N VCLLK+SLYGLKQSPRQWN +FD+ M  +K+ RS +D C+YF K + 
Sbjct: 946  QPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNG 1005

Query: 2138 MSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLY 2317
             + ++LL+YVDDML+       ++ +K  LS +F+MK LGDAKKILGM I RDR+  +L 
Sbjct: 1006 DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLT 1065

Query: 2318 LHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVM 2497
            L Q  YV+K+L+ F M NAK V+ PL  HF L      + + +   M+ +PYAN IGS+M
Sbjct: 1066 LSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIM 1125

Query: 2498 YLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKG 2677
            Y M+ TRPD+AY++  +SRFMS P   HW A+KW+LRY+R +    L F K E+  +L+G
Sbjct: 1126 YSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQED-FLLRG 1184

Query: 2678 YVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWL 2857
            Y DS+Y ++ D R+S T YVFT+ G+ ISWKS+LQ +VA+S+TE+EY+A+TEA+KEALWL
Sbjct: 1185 YCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWL 1244

Query: 2858 KGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            KG  +E+G  +  V V SDSQS I L KN
Sbjct: 1245 KGFAAELGHSQDYVEVHSDSQSAITLAKN 1273


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  849 bits (2194), Expect = 0.0
 Identities = 446/992 (44%), Positives = 636/992 (64%), Gaps = 12/992 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVG----TVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWG 172
            M N+  C ++G+     + CL      + +L++VRH P L  NLIS  ML+  GY  +  
Sbjct: 322  MGNNNVCNIVGIWFCKRSRCLM---ELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSR 378

Query: 173  KGLMKIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRL 352
             G +++ KG+ I+ K   +  LYV                          D+T+LWH RL
Sbjct: 379  IGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEE--------DRTKLWHLRL 430

Query: 353  GHISSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLH 532
            GH+S KGL+ L K+G  G D++  + FC++CI+GK  R  F    +  +     +L+Y H
Sbjct: 431  GHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQ----VLDYAH 486

Query: 533  ADVWGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIK 712
             D WGPA VP+  G RYF+S+IDD+SRKV+++++K K    EK + WK+L+ENQ+  K+K
Sbjct: 487  IDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLK 546

Query: 713  YLRTDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGL 892
             LRTDNGLEFC+++ ++ C   GI RHK+V +TPQQNG+AERMNRTL+++ R ML  S L
Sbjct: 547  CLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSKL 606

Query: 893  SKKFWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLD 1072
             + FW EAV+TA+Y++NRSPS  +  K PE++W+GKP ++ NL++FGC A++H    KL+
Sbjct: 607  PRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLE 666

Query: 1073 PRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTT 1252
             R+LK VF+GYPDGVKGY++W K +   K ++SRDVVF+E+     + +++ +  Q++  
Sbjct: 667  ARALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHESVL-LKESAEHDAGLQDNPA 723

Query: 1253 PNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELN 1432
             NK   S    ++V       +   D  +  +  +D E   AE  ++E  E P  D    
Sbjct: 724  ANKRSGSETSKVNV-------ELLTDKSSEKEAASDDERATAESEEHEVSELPQAD---- 772

Query: 1433 HENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSV 1612
                    L +Y L RDR RR +R P ++    L +Y     + +   EP  + +A+ SV
Sbjct: 773  --------LQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESV 824

Query: 1613 NSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV------RYKAR 1774
            +  KWL AMQDEM SL  N TW L+P P N  +++CKW+FK    NEG+      +YKAR
Sbjct: 825  HCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK---RNEGIPDVEPPKYKAR 881

Query: 1775 LVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIF 1954
            LVA+GFTQ+EG+D+ EIF+PVVK  ++RI+LA+VA  D EL+Q+DVKTAFLHG+LEEQI 
Sbjct: 882  LVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQIL 941

Query: 1955 MKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYF-KL 2131
            M QPEGFE K K ++VCLL KSLYGLKQSPRQW ++FD  M+   + RS++D C+YF   
Sbjct: 942  MAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGS 1001

Query: 2132 DAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 2311
            D     +LL+YVDDML+       I+ +KN L A+F+MK LG+AK+ILGM+I RDR+   
Sbjct: 1002 DQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGT 1061

Query: 2312 LYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGS 2491
            L+L Q  Y++K+L++F M + K V  PL   F LS   +  T  + S M   PYA A+GS
Sbjct: 1062 LFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLS---AATTSEDESQMNEFPYAQAVGS 1118

Query: 2492 VMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENG-VV 2668
            +MY MV TR DIAYAVS +SR++S PG VHWNA+KW++RYL+ S+   L + K ++  + 
Sbjct: 1119 LMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIE 1178

Query: 2669 LKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEA 2848
            + G+VDS++A D D RKST+ Y+F L    ISWKS LQ   ALS+TE+E++A TEA+KEA
Sbjct: 1179 VMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEA 1238

Query: 2849 LWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            +WL+GL++E+   ++ V VF D+Q+ I L KN
Sbjct: 1239 MWLRGLLNELWLNQKIVQVFCDNQNAIHLVKN 1270


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  844 bits (2180), Expect = 0.0
 Identities = 442/986 (44%), Positives = 632/986 (64%), Gaps = 6/986 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C+V G+GTV +K+  G + TL+DV+H+P+L  +LIS               G++
Sbjct: 315  MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY-------------GIL 361

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL++ K + K  NLY                           D T LWH RLGH+
Sbjct: 362  KVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNS------DATNLWHMRLGHM 415

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  GL  L K G      +  + FC+ CI+GK +RV F TS++  +     IL+Y+H+D+
Sbjct: 416  SEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDL 471

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGPA   + GG RY ++++DD+SRKV+ + +K+K   F+  + WKT++E QT +K+K LR
Sbjct: 472  WGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILR 531

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG+EFC+++    C   GIV H + P+TPQQN VAERMNRT++ + R MLS +GL K+
Sbjct: 532  TDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQ 591

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EAV TA Y+INRSP   +  K P +VWSG P ++S+L++FGC+A+ H    KL+PR+
Sbjct: 592  FWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRA 651

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
            +KC+FLGY  GVKGY+LW       KV+ISR+VVF+E+       S NV           
Sbjct: 652  IKCIFLGYASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNVP---------- 699

Query: 1262 VELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHEN 1441
            VE     S+ V     +I + H P    DV   I  D   + D+        D+ + H++
Sbjct: 700  VESQEKASVQVEH---LISSGHAP-EKEDVA--INQDAPVIEDS--------DSSIVHQS 745

Query: 1442 AENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIE-NSEPKTYIDAVNSVN 1615
             +        + +D+ +RNI+ P ++ +   + +Y  SV E IE N+EP TY +A+ S +
Sbjct: 746  PKRS------IAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDD 799

Query: 1616 SVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAK 1786
              +W++AM DEM SL  N+TWELV  P     + CKW+FK K+    ++  RYKARLVAK
Sbjct: 800  CNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAK 859

Query: 1787 GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQP 1966
            G++Q  GID+ ++F+PVVK  ++R +L +VA  D+EL+Q++VKTAFLHG+LEE I+M+QP
Sbjct: 860  GYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQP 919

Query: 1967 EGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSP 2146
            EGF    K N VC LKKSLYGLKQSPRQW K+FD  ML  KF  S +D C+Y K+   S 
Sbjct: 920  EGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGSV 979

Query: 2147 VFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQ 2326
            ++LL+YVDDML+       I+ +K  LS++F+MK LG AKKILGM I R+R++  LYL Q
Sbjct: 980  IYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 1039

Query: 2327 SSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLM 2506
              Y+EK+L++F+M +AK V+ PLAAHF LS D  P +D +I  M  +PY++A+GS+MY M
Sbjct: 1040 KGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAM 1099

Query: 2507 VSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVD 2686
            V  RPD+++A+S ++R+M+NPG  HW A++W+ RYLR ++  CL+F +  +G+V  GYVD
Sbjct: 1100 VCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERSRDGLV--GYVD 1157

Query: 2687 SNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGL 2866
            S++A D D R+S T YVFT+ G  +SWK+ LQ  VALSTTE+EY+A+ EA KEA+WL+GL
Sbjct: 1158 SDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKEAIWLRGL 1217

Query: 2867 VSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             +E+  +   + +F DSQS I L K+
Sbjct: 1218 YTELCGVTSCINIFCDSQSAIYLTKD 1243


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  843 bits (2177), Expect = 0.0
 Identities = 449/996 (45%), Positives = 628/996 (63%), Gaps = 16/996 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M ND   +++G+G V +++  G V  L +VRH P L+ NLIS + ++  G+  +   G++
Sbjct: 293  MGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNGVL 352

Query: 185  KIMKGSLIIAK-AEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KG ++  K A +  N+Y                           DKTELW +RLGH+
Sbjct: 353  KVGKGQMVYMKGAIQPDNMYKLTGSTVEGGAGVCTEE----------DKTELWRRRLGHM 402

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S +GL+ LHK+          + FC  C  GKQ RVSF  SS   +S    +L+Y+H DV
Sbjct: 403  SQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSK--GVLDYIHTDV 460

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP++  + GG RYF+S IDDFSRKV++F MK K++VF K + WK  + NQTG+KIK LR
Sbjct: 461  WGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLR 520

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            +DNG E+ ++   QLC D GI RH +V  +PQQNGVAERMNRTL+E+ RSM   +GL ++
Sbjct: 521  SDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEE 580

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVD---KLD 1072
            FW EA + A Y+INRSPS  +  K  E+VWSGKPVD+SNL++FGCSA+ H   D   KL+
Sbjct: 581  FWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLE 640

Query: 1073 PRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTT 1252
            P+SL+C+F+G+  GVKGY+LW       K +ISRDVVF+E E   + ++K          
Sbjct: 641  PKSLECLFIGFEKGVKGYKLWDIVNE--KKVISRDVVFDEREAISISLAK---------- 688

Query: 1253 PNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLV--DTE 1426
                     PS++        D+E     A    N+  ND   + + EH + P V    E
Sbjct: 689  ---------PSVA--------DSE-----AQVEQNEQGNDEVAIEEPEHQQQPTVMAQVE 726

Query: 1427 LNHENAENDNLNDYV------LTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKT 1588
             + +  +N  +          +  D+ +RN +   +F  F     V     SI   +P T
Sbjct: 727  QSPQRGQNSPIPQAPESFKRSIALDKPKRNRKPIQRFG-FEPEEDVSRAL-SISQGDPTT 784

Query: 1589 YIDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGV 1759
            Y DA+ SV S  W+ AM +EM SL+ N+ WELVPKP    +V CKW+F+ K+   E++ +
Sbjct: 785  YEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAI 844

Query: 1760 RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDL 1939
             YKARLVAKG++QKEG+DY EIF+PVVK  ++R++L++ AQ+D E++Q+DVKTAFLHGDL
Sbjct: 845  TYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDL 904

Query: 1940 EEQIFMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCL 2119
            EE I+M QPEGF +  K N VC LKKSLYGLKQSPRQW K FD  ML + + R ++D C+
Sbjct: 905  EEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCV 964

Query: 2120 YFKL-DAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRD 2296
            Y+ + +    + LL+YVDDML+    +  I  +K  L A+FDMK LG A+KILG+ I RD
Sbjct: 965  YYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRD 1024

Query: 2297 RNNSVLYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYA 2476
            RN   ++L Q  Y+ KIL++F+M  AK V++PLAAHF LS +Q P    EI  M+N+PYA
Sbjct: 1025 RNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYA 1084

Query: 2477 NAIGSVMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCE 2656
            +A+G +MY M+ TRPD+A A+S +S++MSNPG  HW A+KW+ +YL+++    + F + +
Sbjct: 1085 SAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQ 1144

Query: 2657 NGVVLKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEA 2836
                + G+VDS++A D D R+ST  YVFT  G  +SWK+ LQ + ALSTTE+EY+A+TEA
Sbjct: 1145 GEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEA 1204

Query: 2837 LKEALWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             KEA+WL GL  ++G  ++ VVV  DSQS I L KN
Sbjct: 1205 SKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKN 1240


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  872 bits (2252), Expect = 0.0
 Identities = 447/986 (45%), Positives = 646/986 (65%), Gaps = 6/986 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D  C+V G+GTV +K+  G + TL+DVRH+P+L  +LIS   L+  GY+   G G++
Sbjct: 537  MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 596

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL++ KA+ K  NLY                           D T LWH RLGH+
Sbjct: 597  KVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS------DATNLWHMRLGHM 650

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            +  GL  L K G      +  + FC+ CI+GK +RV F TS++  +     IL+Y+H+D+
Sbjct: 651  TEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDL 706

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGPA   + GG RY ++++DD+SRKV+ + +K+K   F+  + WKT++E QT +K+K LR
Sbjct: 707  WGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILR 766

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG+EFC+++    C   GIVRH +VP+TPQQNGVAERMNRT++ + R +LS +GL K+
Sbjct: 767  TDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQ 826

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EAV TA Y+INRSPS  +  K P +VWSG P ++S+L++FGC+A+ H    KL+PR+
Sbjct: 827  FWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 886

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
            +KC+FLGYP GVKGY+LW       KV+ISR+VVF+E+       S NV           
Sbjct: 887  IKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNVP---------- 934

Query: 1262 VELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHEN 1441
            VE     S+ V     +I + H P          E ++  +N +E    P+++   +   
Sbjct: 935  VESQEKASVQVEH---LISSGHAP----------EKEDVAINQDE----PVIEDSNSSIV 977

Query: 1442 AENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIE-NSEPKTYIDAVNSVN 1615
             ++   +   + +DR +RNI+ P ++ +  ++ +Y  SV E IE N+EP TY +A+ S +
Sbjct: 978  QQSPKRS---IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDD 1034

Query: 1616 SVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAK 1786
              +W++AM DEM SL  N+TWELV  P     + CKW+FK K+    ++  RYKARL+AK
Sbjct: 1035 CNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAK 1094

Query: 1787 GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQP 1966
            G++Q  GID+ ++F+PVVK  ++R +L++VA  D+EL+Q+DVKTAFLHG+LEE I+M+QP
Sbjct: 1095 GYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQP 1154

Query: 1967 EGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSP 2146
            +GF    K N VC LKKSLYGLKQSPRQW K+FD  ML  KF RS +D C+Y K+   S 
Sbjct: 1155 KGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSA 1214

Query: 2147 VFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQ 2326
            ++LL+YVDDML+       I  +K  LS++F+MK LG AKKILGM I R R++  LYL Q
Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274

Query: 2327 SSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLM 2506
              Y+EK+L++F+M +AK V+ PLAAHF LS D  P++D +I  M  +PY++A+GS+MY M
Sbjct: 1275 KGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAM 1334

Query: 2507 VSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVD 2686
            V +RPD+++A+S +SR+M+NPG  HW A++W+ RYLR ++  CL+F +  +G+V  GYVD
Sbjct: 1335 VCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDGLV--GYVD 1392

Query: 2687 SNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGL 2866
            S++A D D  +S   YVFT+ G  +SWK+ LQ  VALSTTE+EY+A++EA KEA+WL+GL
Sbjct: 1393 SDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGL 1452

Query: 2867 VSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             + +  +   + +F DSQS I L K+
Sbjct: 1453 YTVLCAVTSCINIFCDSQSAICLTKD 1478


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  851 bits (2198), Expect = 0.0
 Identities = 447/993 (45%), Positives = 625/993 (62%), Gaps = 12/993 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            + +D +  V G G+V +K+  G V TLN   +VP L  NLIS   L+ +GY      G++
Sbjct: 649  LGDDGELGVKGSGSVQIKMYDGLVRTLN-AWYVPGLRKNLISVGTLDKNGYTFSGSGGVL 707

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            ++ KG+L++ K   +  +Y                             TELWH+RLGH+S
Sbjct: 708  RVSKGALVVMKGRLQHGIYTLMGSSVLGTAAVEEDNC-----------TELWHRRLGHMS 756

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADVW 544
             KGL +L K+G     +   + FC++C+ GKQ+RV F   S+    +   +LEY+H+D+W
Sbjct: 757  EKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSH----TTNGVLEYIHSDLW 812

Query: 545  GPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLRT 724
            GP+ V +H G RY+++ IDDFSRKV+V+ +K K +VF K + WKT++E +TGK +K LRT
Sbjct: 813  GPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRT 872

Query: 725  DNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKKF 904
            DNGLEFCN+  D+ C   GIVRH++V +TPQQNGVAERMN+TL++R R M   +GLSKKF
Sbjct: 873  DNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKF 932

Query: 905  WGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSL 1084
            W EAV+TAAY++NRSPS  +  K P++VWSGKP ++S LKIFGC A+ H    KL+PR++
Sbjct: 933  WAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAM 992

Query: 1085 KCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNKV 1264
            KC+FLGY  GVKGYRLW   +   K +ISRDV F+E+                +    + 
Sbjct: 993  KCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDES----------------AMFGQRK 1036

Query: 1265 ELSNVPSISVND--NSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHE 1438
            E  ++   S  D   +  ++ E D    N V            D+  +E P++D      
Sbjct: 1037 EFGDLAGTSKTDLGANQKVEFEVDAPMENGV------------DDTSEEQPVID------ 1078

Query: 1439 NAENDNLNDYVLTRDRTRRNIRIPNKFADF------HLTSYVFSVFESIENSEPKTYIDA 1600
              +ND+ +   +   R RR IR P ++ D       +  ++  +V E I   EP++Y +A
Sbjct: 1079 --QNDSQS---IAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEA 1133

Query: 1601 VNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKA 1771
            + S +S KWLS+M DEM SL  N TWELVP P     VDCKWLFKIK    E+E  +YK+
Sbjct: 1134 MESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKS 1193

Query: 1772 RLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQI 1951
            RLVAK            +F+PVVK  ++R++LA+V+ F+ EL QLDVKTAFLHG+LEE+I
Sbjct: 1194 RLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEI 1241

Query: 1952 FMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFK- 2128
            +MKQPEGF D  K +HVC LKKSLYGLKQSPRQW K+FD  M+  +F R+++D C+YFK 
Sbjct: 1242 YMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKT 1301

Query: 2129 LDAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNS 2308
            L   S ++LL+YVDDML+       I+ +K  LS++F+MK LG AKKILGM I RDR+  
Sbjct: 1302 LPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAG 1361

Query: 2309 VLYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIG 2488
            +LY+ Q  Y+EK++Q F M ++K V+ PLA HF       P TD E+  M+++PY++ +G
Sbjct: 1362 LLYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVG 1421

Query: 2489 SVMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVV 2668
            S+MY MV TRPD+A+AVS +SRFMSNPG  HW A+KW++RYL+ S+  CL +   +    
Sbjct: 1422 SLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSG 1481

Query: 2669 LKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEA 2848
            L G+ DS++  D   R+S T Y+FTL G  ISW++ LQ  VALSTTE+EY+++TE +KE 
Sbjct: 1482 LVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKEG 1541

Query: 2849 LWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKNP 2947
            +WL G +  +G      V++ DSQS + L KNP
Sbjct: 1542 MWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNP 1574


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  837 bits (2162), Expect = 0.0
 Identities = 438/990 (44%), Positives = 619/990 (62%), Gaps = 10/990 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M +D   +++G+G+V +K   G   TL DVRH+P ++ NLIS + L+ +GY+     G++
Sbjct: 323  MGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVV 382

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+    +    NLYV                           KT LWH RLGH+
Sbjct: 383  KVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEP------SKTNLWHMRLGHM 436

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K           + FC+ C++GK +RV F TS +  +     IL+Y+HAD+
Sbjct: 437  SELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKG----ILDYVHADL 492

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L++IDD+SRK + + +K+K D F   +  K +IE QT K++K L 
Sbjct: 493  WGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLC 552

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNG EFC+   D  C   GIVRH ++PYTPQQNGVAERMNRT++ + R MLS + ++K+
Sbjct: 553  TDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKR 612

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA +TA Y+INRSPS+PL  K P ++WSG P D+S L++FGC+A+ H    KL+PR+
Sbjct: 613  FWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRA 672

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNE----NEFPCLDVSKNVSETQNST 1249
            +KC+FLGY  GVKGY+LW+   N  K  +SR+V+FNE    N+    DV    S+ +   
Sbjct: 673  IKCLFLGYGSGVKGYKLWNPETN--KTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQY 730

Query: 1250 TPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTEL 1429
               +VE               +D +   +  NDV++ +++  + L               
Sbjct: 731  VSVQVE--------------HVDDQETEIVGNDVNDTVQHSPSVLQPQ------------ 764

Query: 1430 NHENAENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIENS-EPKTYIDAV 1603
                       D  +   RT+R+   P +  +   +  Y FS  E +EN+ EP TY +AV
Sbjct: 765  -----------DEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAV 813

Query: 1604 NSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKAR 1774
             S +  KW+SA+Q+EM SL  N TWELV  P     V CKW+FK K+    +E  R+K R
Sbjct: 814  VSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVR 873

Query: 1775 LVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIF 1954
            LVAKGF+Q  G+DY ++F+PVVK  ++R   ++V   D EL+QLDVKT FLHG+LEE+I+
Sbjct: 874  LVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIY 933

Query: 1955 MKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLD 2134
            M QPEGF    K ++VC LK+SLYGLKQSPRQW K+FD  ML   F RS+FD C+Y K  
Sbjct: 934  MDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFV 993

Query: 2135 AMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVL 2314
              SP++LL+YVDDML+     + I  +K  LS++FDMK LG AKKILGM I RDRN+ +L
Sbjct: 994  NGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLL 1053

Query: 2315 YLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSV 2494
            +L Q SY++K+LQ+F+M +AK V+ P+A HF LS  Q   TD ++  M  +PY++A+GS+
Sbjct: 1054 FLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSL 1113

Query: 2495 MYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLK 2674
            MY MV + PD+++A+S +SR+M+NPG  HW A++W+ RYLR + D CLKF + + G+V  
Sbjct: 1114 MYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDKGLV-- 1171

Query: 2675 GYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALW 2854
            GYVDS++A D D R+S T YVFT+    +SWK+ LQ +VA STTE+EY+A+ EA KE++W
Sbjct: 1172 GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVW 1231

Query: 2855 LKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            LKGL +E+  +   + +F DSQS I L K+
Sbjct: 1232 LKGLFAELCGVDSCINLFCDSQSAICLTKD 1261


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  823 bits (2127), Expect = 0.0
 Identities = 435/1000 (43%), Positives = 619/1000 (61%), Gaps = 20/1000 (2%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            + +D   +  G GT+ +    G +  L +V++VP L  NLIS   L+  GY    G+G +
Sbjct: 338  LGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKV 397

Query: 185  KIMKGSLIIAKAEKKRNLYV----------CNAEXXXXXXXXXXXXXXXXXXXXXIDKTE 334
            +  K +    +      LYV          CNAE                       KT 
Sbjct: 398  RYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETDKV-------------------KTA 438

Query: 335  LWHKRLGHISSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTD 514
            LWH RLGH+S   L++L  +G     ++  + FC+ C+ GK ++VSF    +  +    D
Sbjct: 439  LWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSE----D 494

Query: 515  ILEYLHADVWGPASV-PTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIEN 691
             L Y+HAD+WG  +V P+  G +YFLS+IDD +RKV+++ +K+K + F+K   WK+L+EN
Sbjct: 495  ALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVEN 554

Query: 692  QTGKKIKYLRTDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRS 871
            Q  KK+K LRTDNGLEFCN   D  C + GI RH++  YTPQQNGVAERMNRT++E+VR 
Sbjct: 555  QVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRC 614

Query: 872  MLSTSGLSKKFWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVH 1051
            +L+ SG+ + FW EA  TAAY+INRSP+  +    PE++W  +   + +L+ FG  A+VH
Sbjct: 615  LLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVH 674

Query: 1052 QKVDKLDPRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNEN-EFPCLDVSKNV 1228
            Q   KL PR+LK  FLGYP G KGY++W   E   K +ISR+VVF E+  +  L V ++ 
Sbjct: 675  QDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQESVVYRDLKVKEDD 732

Query: 1229 SE--TQNSTTPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHD 1402
            ++   Q  TT ++VE +     S +     + ++ +P+   +  +D E         E  
Sbjct: 733  TDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSE---------EEV 783

Query: 1403 EFPLVDTELNHENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEP 1582
            E+    +E   E  +   L  Y L RDR RRNI  P +F +    ++   V E+    EP
Sbjct: 784  EY----SEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEP 839

Query: 1583 KTYIDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV- 1759
            ++Y +A+ S +  KW  A  DEM SL  N TW+LV KP +  I+ C+WLFK+K    GV 
Sbjct: 840  QSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVE 899

Query: 1760 --RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHG 1933
              R+KARLVAKG+TQ+EG+DY EIFAPVVK V++RI+++LV   D EL+Q+DVKT FLHG
Sbjct: 900  PTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHG 959

Query: 1934 DLEEQIFMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDH 2113
            DLEE+++M+QPEGF   S  N VC LKKSLYGLKQSPRQWNK+FD+ M   +F RS+ D 
Sbjct: 960  DLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDA 1019

Query: 2114 CLYFK-LDAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNID 2290
            C+Y K +     ++LL+YVDDML+ G     I+ VK  LS +F+MK +G A +ILG++I 
Sbjct: 1020 CVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIY 1079

Query: 2291 RDRNNSVLYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLS--RDQSPKTDLEISSMQN 2464
            RDR   VL L Q  Y+ K+L +F+M  AK  N P+ AHF L+  R++    D ++     
Sbjct: 1080 RDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAVREEDECVDTDV----- 1134

Query: 2465 IPYANAIGSVMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKF 2644
            +PY++A+GS+MY M+ TRPD+AYA+  +SR+MS PG +HW A+KW++RYL+ + D  L F
Sbjct: 1135 VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVF 1194

Query: 2645 SKCENGVVLKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVA 2824
            +K E    + GY DSNYA D D R+S + YVFT+ G+ +SWK+ LQ +VA+STTE+EY+A
Sbjct: 1195 TK-EKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIA 1253

Query: 2825 VTEALKEALWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            + EA KEA+W+KGL+ ++G  +  V ++ DSQS I L KN
Sbjct: 1254 LAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKN 1293


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  834 bits (2154), Expect = 0.0
 Identities = 435/882 (49%), Positives = 587/882 (66%), Gaps = 8/882 (0%)
 Frame = +2

Query: 323  DKTELWHKRLGHISSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQS 502
            DK +LWH RLGH+S++GLE+L        +K++ + FC+ C+ GKQ++V+F T  +    
Sbjct: 1002 DKAKLWHMRLGHMSARGLEMLSNRNLLNGEKISTLEFCEHCVLGKQKKVTFSTGKHKTGG 1061

Query: 503  SCTDILEYLHADVWGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTL 682
                +L+Y+H+D+WGP+ +P+ GG RY L+ IDDFSRKV+V  +K K D FE  + WK L
Sbjct: 1062 ----VLDYIHSDLWGPSKLPSKGGKRYLLTFIDDFSRKVWVRFLKTKGDAFEAFKEWKIL 1117

Query: 683  IENQTGKKIKYLRTDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLER 862
            +ENQ  +KIKYLRTDNGLEFC++  +  C   GI RHK+V +TPQQNGVAERMNRTLLE+
Sbjct: 1118 VENQIERKIKYLRTDNGLEFCSEEFNDFCKVHGIARHKTVRHTPQQNGVAERMNRTLLEK 1177

Query: 863  VRSMLSTSGLSKKFWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSA 1042
             R ML  + +SK FW +AVHTA++++NRSP+  +  K P +VWSG+P ++S L+IFGC  
Sbjct: 1178 ARCMLLQAKMSKVFWAKAVHTASHIVNRSPASAIDFKTPNEVWSGEPSNYSYLRIFGCPT 1237

Query: 1043 FVHQKVDKLDPRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSK 1222
            + H    KL+PRS K +F+GY DGVKGY+LW  S    K ++SRDV F+E+    LD   
Sbjct: 1238 YYHVNEGKLEPRSKKAIFVGYVDGVKGYKLWCLSL--LKFVVSRDVTFDESSI--LD--- 1290

Query: 1223 NVSETQNSTTPNKVELSNVPSISVNDNSDMIDAEHDPVNAND--VHNDIENDNAELNDNE 1396
                      P KV +     +S N+N++ ++   +     D    +D   D  EL  NE
Sbjct: 1291 ----------PRKVSM----ELSRNENNEQVELPVELTKKRDQETQSDESKDAEELASNE 1336

Query: 1397 HDEFPLVDTELNHENAENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVF-SVFESIE 1570
                                   Y + + R +R IR P +  +  +L +  F +  E I+
Sbjct: 1337 ----------------------PYTIAKGRDKRRIRKPERLIEQENLIAQAFVAAEEEIK 1374

Query: 1571 NSEPKTYIDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ-- 1744
            + EP +YI+A +  ++ +W  AM +EM SL+ N TW LV +P     V CKW++K K+  
Sbjct: 1375 DLEPSSYIEATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGI 1434

Query: 1745 -ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTA 1921
             E E  R+KARLVAKGF+QKEGIDY EIF+PVVK  ++R++LALVAQFD EL+QLDVKTA
Sbjct: 1435 PEVEAARFKARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTA 1494

Query: 1922 FLHGDLEEQIFMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRS 2101
            FLHGDLEE I+M QPEGF  + K +HVC LKKSLYGLKQSPRQW K+FD  M    F RS
Sbjct: 1495 FLHGDLEETIYMDQPEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRS 1554

Query: 2102 KFDHCLYF-KLDAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILG 2278
             FD C+Y  K+   S ++LL+YVDDML+    I  I+ +K  LS +FDMK LG AKKILG
Sbjct: 1555 AFDSCVYHKKMSGNSMIYLLLYVDDMLIAANNITEINILKKLLSKEFDMKDLGVAKKILG 1614

Query: 2279 MNIDRDRNNSVLYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSM 2458
            M I R+  N V++L Q  Y+ K+L++F+M  +K V+ PLA+HF LS  Q P++  E+  M
Sbjct: 1615 MEISRE--NGVVHLSQKRYIRKVLERFNMDMSKPVSTPLASHFKLSELQMPQSMDEVEHM 1672

Query: 2459 QNIPYANAIGSVMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCL 2638
              +PYA+A+GS+MY MV TRPDIA +VS +S++M+NPG  HW A+KW+LRYL+ + D  L
Sbjct: 1673 SKVPYASAVGSIMYAMVCTRPDIAQSVSVVSKYMANPGKRHWEAVKWILRYLKGAPDVGL 1732

Query: 2639 KFSKCENGVVLKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEY 2818
             F K E G+ + GYVDS+YA D D R+STT Y+FTL GS +SWKS LQ IVALSTTE+EY
Sbjct: 1733 TFRKSE-GISILGYVDSDYAGDLDRRRSTTGYIFTLVGSAVSWKSTLQSIVALSTTEAEY 1791

Query: 2819 VAVTEALKEALWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            +A TEA+KEA+WLKGLV+E+   +   ++  DSQS I L KN
Sbjct: 1792 MAATEAVKEAIWLKGLVAELSSAQLKSILKCDSQSAIHLIKN 1833


>gb|KYP59064.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1300

 Score =  811 bits (2096), Expect = 0.0
 Identities = 442/985 (44%), Positives = 609/985 (61%), Gaps = 4/985 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            +A++K  +++G G V +K  +G   TL DVRH+P L  NLIS   L+ DG+   +G G  
Sbjct: 303  LADNKPLKIVGKGDVRIKYANGSCWTLRDVRHIPGLKRNLISVGQLDSDGFHIMFGDGKW 362

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            K+ KG++ +A+  K   LY+                         + + +LWH RLGH+S
Sbjct: 363  KVSKGAMTLARGLKSGTLYMAGGSNPNIPFAGA------------VSQADLWHNRLGHMS 410

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSY-PKQSSCTDILEYLHADV 541
             KG+ +L   G     K   V  C+ C+ GKQ+RVSF T+   PK       LE +H D+
Sbjct: 411  EKGMSVLKSIGRLPELKSVDVGLCEHCVLGKQKRVSFMTTGRTPKMKK----LELVHTDL 466

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGPA V + GG+ Y+++ +DD +RKV+V+ +K KSD F+  + W+ L+EN+TG ++K LR
Sbjct: 467  WGPAPVISLGGSTYYMTFVDDCTRKVWVYFLKRKSDAFDTFRRWRALVENETGLQVKCLR 526

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            +DNG E+ ++ I + C D GI   K++P TPQQNGVAERMNRTL ER R M   SGL K 
Sbjct: 527  SDNGGEYNSEAIKEYCADRGIRMQKTIPGTPQQNGVAERMNRTLNERARCMRLKSGLPKM 586

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFV-HQKVDKLDPR 1078
            FW EAV TAA++INR PSVPL  + PE+VWSGK VD S L+ FGC A+V +    KLD +
Sbjct: 587  FWAEAVSTAAFLINRGPSVPLNNRIPEEVWSGKEVDLSFLRTFGCLAYVLNDDRTKLDAK 646

Query: 1079 SLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPN 1258
            S+KC F+GY     GY+ W       K++ SR+VVF+E             + + S    
Sbjct: 647  SIKCTFIGYGTDEFGYKFWDDLNR--KIIRSRNVVFDEGMM--------YKDKKESLNDG 696

Query: 1259 KVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHE 1438
            K+E   V  + +++      A++D V       D   + +E       EF          
Sbjct: 697  KME-KEVVGLDISNTRIPRPADNDSVGVQMEETDQTEEESEPEPPPPFEF---------- 745

Query: 1439 NAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSVNS 1618
             A  +  +   L   R  R  R P +++    + Y   + +     EP+ Y +AVN  + 
Sbjct: 746  RATRETESRTPLALGRVTRKRRAPERYSP---SLYYLLLTDC---GEPECYAEAVNDDHK 799

Query: 1619 VKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV-RYKARLVAKGFT 1795
             KW  AM DEM SL  N+TWEL   P     +  +W++++K+E++G  RYKARLV KGF 
Sbjct: 800  SKWELAMDDEMCSLKKNDTWELCQLPQGKKALQNRWVYRVKEESDGKKRYKARLVVKGFQ 859

Query: 1796 QKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQPEGF 1975
            Q+ GID+T++F PVVK  T+R++L++VA  + EL+Q+DVKTAFLHGDLEE+I+M QPEG+
Sbjct: 860  QRYGIDFTDVFTPVVKITTIRLVLSMVAAENLELQQMDVKTAFLHGDLEEEIYMVQPEGY 919

Query: 1976 EDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSPVFL 2155
              K     VC LKKSLYGLKQ+PRQW +KFD  ML++ + R   DHC Y K    S + L
Sbjct: 920  --KGDDQQVCRLKKSLYGLKQAPRQWYRKFDNFMLEIGYSRCSADHCCYVKRFGDSFIIL 977

Query: 2156 LIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQSSY 2335
            L+YVDDML+ G  +  I+ +K+ LS +FDMK LG+A++ILGM I RDRN   L+L QS Y
Sbjct: 978  LLYVDDMLIAGSNVMEINRLKDQLSRRFDMKDLGEARQILGMKITRDRNTGKLWLSQSEY 1037

Query: 2336 VEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLMVST 2515
            +EK+L +F M  AK V VPL + F LS   SPK D E   M+  PYA+AIGS+MY MV T
Sbjct: 1038 IEKVLCRFKMEAAKPVGVPLGSQFKLSNKDSPKDDSERERMRGTPYASAIGSLMYAMVCT 1097

Query: 2516 RPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVDSNY 2695
            RPDIA+AV  +SRFMSNPG++HW A+KW+LRYLR + D  L F +    + L G+VD+++
Sbjct: 1098 RPDIAHAVGVVSRFMSNPGVMHWEAVKWILRYLRGTKDRVLMFGR--GNLTLSGFVDADF 1155

Query: 2696 A-NDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGLVS 2872
            A +D D R+STT YVFT  G+ ISW S+LQ IVALSTTE+EYVAVTEA KE +WL+  ++
Sbjct: 1156 AGSDLDKRRSTTGYVFTYGGTAISWISKLQKIVALSTTEAEYVAVTEAAKELVWLQNFLN 1215

Query: 2873 EIGFLKQNVVVFSDSQSGIQLCKNP 2947
            E+G  ++ V ++SDSQS I L KNP
Sbjct: 1216 ELGRPREYVALYSDSQSAIHLAKNP 1240


>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
          Length = 1261

 Score =  808 bits (2088), Expect = 0.0
 Identities = 451/985 (45%), Positives = 607/985 (61%), Gaps = 5/985 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            +A+     V+G+G V + L +G V  L  VR++PDL  NLIS   L+ +G+   +  G  
Sbjct: 279  LADGSALDVVGLGDVRISLPNGSVWLLEKVRYIPDLRRNLISVGQLDDEGHAILFVGGTW 338

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            K+ KG+ ++A+ +K   LY+ +                          T LWH+RLGH+S
Sbjct: 339  KVTKGARVLARGKKTDTLYMTSCPRDTIAVADASTD------------TSLWHRRLGHMS 386

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSF-PTSSYPKQSSCTDILEYLHADV 541
             K +++L  +G     K      C+SCI GKQ++VSF  T   PK       LE +H D+
Sbjct: 387  EKWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEK----LELVHTDL 442

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+ V + GG+RY+++ I+D SRKV+V+ +KNKSDVF   + WK ++E +TG K+K LR
Sbjct: 443  WGPSPVASLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLR 502

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            +DNG E+ +    + C   GI   K++P TPQQNGVAERMNRTL ER RSM   +GL K 
Sbjct: 503  SDNGGEYIDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKT 562

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVD---KLD 1072
            FW +AV TAAY+INR PSVP++ + PE+VWSGK V FS+LK+FGC ++VH   D   KLD
Sbjct: 563  FWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLD 622

Query: 1073 PRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTT 1252
             +S  C F+GY D   GYR W   E   K++ SR+V+FNE           + + +++ T
Sbjct: 623  AKSKICFFIGYGDEKFGYRFWD--EQNRKIIRSRNVIFNEQV---------MYKDRSTVT 671

Query: 1253 PNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELN 1432
             +  E+    S  VN          D +  + V    E D   +N       P+V+    
Sbjct: 672  SDVTEIDQKKSEFVN---------LDELTESTVQKGGEEDKENVNSQVDLSTPIVEVR-- 720

Query: 1433 HENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSV 1612
                             R+ RN R P ++      S V +     +  EP+ Y +A+   
Sbjct: 721  -----------------RSSRNTRPPQRY------SPVLNYLLLTDGGEPECYDEALQDE 757

Query: 1613 NSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV-RYKARLVAKG 1789
            NS KW  AM+DEM SL  N TW+L   PV    +  KW+++IK E++G  RYKARLV KG
Sbjct: 758  NSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWVYRIKNEHDGSKRYKARLVVKG 817

Query: 1790 FTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQPE 1969
            F QKEGIDYTEIF+PVVK  T+R++L +VA  +  L+QLDVKTAFLHGDLEE ++M QPE
Sbjct: 818  FQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPE 877

Query: 1970 GFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSPV 2149
            GF  + + N VC L+KSLYGLKQ+PRQW KKFD  M  + F R + DHC YFK    S +
Sbjct: 878  GFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSYI 937

Query: 2150 FLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQS 2329
             LL+YVDDML+ G  I+ I+++K  LS +F MK LG AK+ILGM I RD+ N  L L QS
Sbjct: 938  ILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQS 997

Query: 2330 SYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLMV 2509
             YV+K+L +F+M  AK V+ PL +HF LS++QSPKT+ E   M  +PYA+AIGS+MY MV
Sbjct: 998  EYVKKVLXRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPYASAIGSLMYAMV 1057

Query: 2510 STRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVDS 2689
             TR DIA+AV  +SRFMS PG  HW A+KW+LRYL+ S D CL F+     + L+GYVD+
Sbjct: 1058 CTRLDIAHAVGVVSRFMSXPGKQHWEAVKWILRYLKGSLDTCLCFTGA--SLKLQGYVDA 1115

Query: 2690 NYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGLV 2869
            ++A D D+RKSTT +VFTL G+ ISW S LQ IV LSTTE+EYVA TEA KE +WL G +
Sbjct: 1116 DFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFL 1175

Query: 2870 SEIGFLKQNVVVFSDSQSGIQLCKN 2944
             E+G  ++  ++ SDSQS I L KN
Sbjct: 1176 DELGKKQEMGILHSDSQSAIFLAKN 1200


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  811 bits (2094), Expect = 0.0
 Identities = 438/993 (44%), Positives = 610/993 (61%), Gaps = 13/993 (1%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M N    +V GVGT+ +K   G  + L +VR++PD+  NL+S    E  GY+     G++
Sbjct: 339  MGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGIL 398

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            +I  G+ ++    +   LY+ N +                      D T LWH+RL H+S
Sbjct: 399  RIKAGNQVLLTGRRYDTLYLLNWKPVASESLAVVKRA---------DDTVLWHQRLCHMS 449

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADVW 544
             K +E+L ++G     K++ +  C+ CIYGK +R SF  + +  +      LEY+H+D+W
Sbjct: 450  QKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEK----LEYIHSDLW 505

Query: 545  GPASVPTHGGN-RYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            G   VP   G  +YF+S+IDDF+RKV+V+ MK K + FEK   W  L+ENQT +++K LR
Sbjct: 506  GAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLR 565

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDNGLEFCN+L D  C   GI RH++  YTPQQNGVAERMNRT++E+VRSMLS SGL K+
Sbjct: 566  TDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKR 625

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA HT   +IN++PS  L  + P++ WSG P  +S L+ +GC AFVH    KL+PR+
Sbjct: 626  FWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDGKLEPRA 685

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEF--PCLDVSKNVSETQNSTTP 1255
             K V +GYP GVKGY++W   E   K ++SR+++F EN      +   +NVS  ++  T 
Sbjct: 686  KKGVLIGYPVGVKGYKVWILDER--KCVVSRNIIFQENAVYKDLMQRQENVSTEEDDQTG 743

Query: 1256 NKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLV------ 1417
            + +E               ++AE D ++          D   +N     E P+V      
Sbjct: 744  SYLEFD-------------LEAERDVISG--------GDQEMVNTIPAPESPVVSTPTTQ 782

Query: 1418 DTELNHENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYID 1597
            DT  + ++  N +   Y L RDR +R IR P +F D    +      E  E  EP+ Y  
Sbjct: 783  DTNDDEDSDVNQSPLSYHLVRDRDKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRK 842

Query: 1598 AVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV---RYK 1768
            A    N  KW  AM +E+ S   NNTW +V +P N  I+ C+W+FK K    GV   R+K
Sbjct: 843  AKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFK 902

Query: 1769 ARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQ 1948
            ARLVAKG+ QKEGIDY EIFAPVVK V++R++L++VAQ D EL+QLDVKTAFLHG+L+E+
Sbjct: 903  ARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEK 962

Query: 1949 IFMKQPEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFK 2128
            I+M  PEG+E   K N VCLL K+LYGLKQ+P+QWN+KFD  M ++ F +S +D C Y K
Sbjct: 963  IYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTK 1022

Query: 2129 -LDAMSPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNN 2305
             L   S ++LLIYVDD+L+     +AI  +K  L  +F+MK LG AKKILGM I RDR  
Sbjct: 1023 VLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTL 1082

Query: 2306 SVLYLHQSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAI 2485
             VL+L Q  Y+ KIL+ ++M  AK    PL AHF        K   +   M+++PY++A+
Sbjct: 1083 GVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAV 1142

Query: 2486 GSVMYLMVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGV 2665
            GS+MY M+ TRPD+AY V  +SRFMS P   HW  +KW+LRY++ +    L + K  +  
Sbjct: 1143 GSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSSSFS 1202

Query: 2666 VLKGYVDSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKE 2845
            ++ GY D++YA D D R+S T  VFTL G+ ISWKS LQ +VA STTESEY+++TEA+KE
Sbjct: 1203 IV-GYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKE 1261

Query: 2846 ALWLKGLVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
            A+WLKGL+ + G+ +++V +F DSQS I L KN
Sbjct: 1262 AIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKN 1294


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  808 bits (2087), Expect = 0.0
 Identities = 454/987 (45%), Positives = 603/987 (61%), Gaps = 7/987 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            +A+     V+G+G V + L +G V  L  VRH+PDL  NLIS   L+ +G+   +  G  
Sbjct: 316  LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTW 375

Query: 185  KIMKGSLIIAKAEKKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHIS 364
            K+ KG  ++A+ +K   LY+ +                          T LWH+RLGH+S
Sbjct: 376  KVTKGVRVLARGKKTGTLYMTSCPRDTIAVADASTD------------TSLWHRRLGHMS 423

Query: 365  SKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSF-PTSSYPKQSSCTDILEYLHADV 541
             KG+++L  +G     K      C+SCI GKQ++VSF  T   PK       LE +H D+
Sbjct: 424  EKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEK----LELVHTDL 479

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+ V + GG+RY+++ IDD SRKV+V+ +KNKSDVF   + WK ++E +TG K+K LR
Sbjct: 480  WGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLR 539

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            +DNG E+ +    + C   GI   K++P TPQQNGVAERMNRTL ER RSM   +GL K 
Sbjct: 540  SDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKT 599

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVD---KLD 1072
            FW +AV TAAY+INR PSVP++ + PE+VWSGK V FS+LK+FGC ++VH   D   KLD
Sbjct: 600  FWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLD 659

Query: 1073 PRSLKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEF--PCLDVSKNVSETQNS 1246
             +S  C F+GY D   GYR W   E   K++ SR+V+FNE       L V+  V+E    
Sbjct: 660  AKSKICFFIGYGDEKFGYRFWD--EQNRKIIRSRNVIFNEQVMYKDRLTVTSXVTEIDQK 717

Query: 1247 TTPNKVELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTE 1426
                K E  N+                D +  + V    E D   +N       P+V+  
Sbjct: 718  ----KSEFVNL----------------DELTESTVQKRGEEDKENVNSKVDLRTPVVEVR 757

Query: 1427 LNHENAENDNLNDYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVN 1606
                               R+ RNIR P ++      S V +     +  EP+ Y +A+ 
Sbjct: 758  -------------------RSSRNIRPPQRY------SPVLNYLLLTDGGEPECYNEALQ 792

Query: 1607 SVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQENEGV-RYKARLVA 1783
              NS KW  AM+DEM SL  N TWEL   PV    +  KW+++IK E++G  RYKARLV 
Sbjct: 793  DENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEHDGSKRYKARLVV 852

Query: 1784 KGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQ 1963
            KGF QKEGIDY EIF+PVVK  T+R++L +VA  +  L+QLDVKT FLHGDLEE ++M Q
Sbjct: 853  KGFQQKEGIDYIEIFSPVVKMSTIRLVLGMVAVENLHLEQLDVKTTFLHGDLEEDLYMIQ 912

Query: 1964 PEGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMS 2143
            PEGF  + + N VC L+KSLYGLKQ+PRQW KKFD  M  + F R + DHC Y K    S
Sbjct: 913  PEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNS 972

Query: 2144 PVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLH 2323
             + LL+YVDDML+ G  I+ I+++K  LS +F MK LG AK+ILGM I RD+ N  L L 
Sbjct: 973  YIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLS 1032

Query: 2324 QSSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYL 2503
            QS YV+K+L +F+M  AK V+ PL +HF LS++QSPKT+ E   M  +PYA+ IGS+MY 
Sbjct: 1033 QSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASTIGSLMYA 1092

Query: 2504 MVSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYV 2683
            MV TRPDIA+AV  +SRFMS PG  +W A+KW+LRYL+ S D CL F+     + L+GYV
Sbjct: 1093 MVCTRPDIAHAVGIVSRFMSRPGKQNWEAVKWILRYLKGSLDTCLCFTGA--SLKLQGYV 1150

Query: 2684 DSNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKG 2863
            D+++A D D+RKSTT +VFTL G+ ISW S LQ IV LSTTE+EYVA TEA KE +WL G
Sbjct: 1151 DADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHG 1210

Query: 2864 LVSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             + E+G  ++  ++ SDSQS I L KN
Sbjct: 1211 FLDELGKKQEMGILHSDSQSAIFLAKN 1237


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  804 bits (2076), Expect = 0.0
 Identities = 428/986 (43%), Positives = 603/986 (61%), Gaps = 6/986 (0%)
 Frame = +2

Query: 5    MANDKKCQVIGVGTVCLKLDSGFVLTLNDVRHVPDLSNNLISCAMLEHDGYEGRWGKGLM 184
            M ND   +++G+G+V +K   G   TL DVRH+P ++ NLIS + L+ +GY+     G++
Sbjct: 323  MGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVV 382

Query: 185  KIMKGSLIIAKAE-KKRNLYVCNAEXXXXXXXXXXXXXXXXXXXXXIDKTELWHKRLGHI 361
            K+ KGSL+    +    NLYV                          +KT LWH RLGH+
Sbjct: 383  KVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEP------NKTNLWHMRLGHM 436

Query: 362  SSKGLELLHKEGCFGNDKLTCVPFCDSCIYGKQQRVSFPTSSYPKQSSCTDILEYLHADV 541
            S  G+  L K           + FC+ C++GK +RV F TS +  +     IL+Y+HAD+
Sbjct: 437  SELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKG----ILDYVHADL 492

Query: 542  WGPASVPTHGGNRYFLSVIDDFSRKVFVFLMKNKSDVFEKLQNWKTLIENQTGKKIKYLR 721
            WGP+  P+ GG RY L++IDD+SRKV+ + +K+K D F   + WK +IE QT K++K LR
Sbjct: 493  WGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLR 552

Query: 722  TDNGLEFCNQLIDQLCVDSGIVRHKSVPYTPQQNGVAERMNRTLLERVRSMLSTSGLSKK 901
            TDN  EFC+   D  C   GIVRH ++PYTPQQNGVAERMNRT++ + R MLS + ++K+
Sbjct: 553  TDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKR 612

Query: 902  FWGEAVHTAAYVINRSPSVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRS 1081
            FW EA +TA Y+INRSPS+PL  K P ++WSG P D+S L++FGC+A+ H   +KL+PR+
Sbjct: 613  FWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRA 672

Query: 1082 LKCVFLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFPCLDVSKNVSETQNSTTPNK 1261
            +KC+FLGY  GVKGY+LW+   N  K  +SR VVFNE+      V  N S   +      
Sbjct: 673  IKCLFLGYGLGVKGYKLWNPETN--KTFMSRSVVFNES------VMFNDSLPTDVIPGGS 724

Query: 1262 VELSNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTELNHEN 1441
             E     S+ V    + +D +   +  NDV++ +++    L                   
Sbjct: 725  DEEQQYVSVQV----EHVDDQETEIVGNDVNDTVQHSPPVLQPQ---------------- 764

Query: 1442 AENDNLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIENS-EPKTYIDAVNSVN 1615
                   D  +   RT+R+   P +  +   +  Y FS  E +EN+ EP TY +AV S +
Sbjct: 765  -------DEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGD 817

Query: 1616 SVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAK 1786
              KW+SAMQ+EM SL  N TWELV  P     V CKW+FK K+    +E  R+KARLVAK
Sbjct: 818  REKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAK 877

Query: 1787 GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLEEQIFMKQP 1966
            GF+Q  G+DY ++F+PVVK  ++R   ++VA  D EL+QLDVKTAFLHG+LEE+I+M QP
Sbjct: 878  GFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQP 937

Query: 1967 EGFEDKSKPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSKFDHCLYFKLDAMSP 2146
            EGF    K ++VC LK+SLYGLKQSPRQW K+FD  ML   F RS+FD C+Y K    SP
Sbjct: 938  EGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSP 997

Query: 2147 VFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSVLYLHQ 2326
            ++LL+YVDD+L+     + I  +K  LS++FDMK LG AKKILGM I RD+N+ +L+L Q
Sbjct: 998  IYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQ 1057

Query: 2327 SSYVEKILQKFSMCNAKSVNVPLAAHFVLSRDQSPKTDLEISSMQNIPYANAIGSVMYLM 2506
             SY++K+LQ F+M +AK V+ P+A HF LS  Q   TD ++  M  +PY++A+GS+MY M
Sbjct: 1058 QSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQCANTDEDVEYMSRVPYSSAVGSLMYAM 1117

Query: 2507 VSTRPDIAYAVSCLSRFMSNPGLVHWNALKWLLRYLRHSTDYCLKFSKCENGVVLKGYVD 2686
            V +RPD+++A+S +SR+M+NPG  HW A++W+ RYLR + D CLKF + + G++  GYVD
Sbjct: 1118 VCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGLI--GYVD 1175

Query: 2687 SNYANDKDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYVAVTEALKEALWLKGL 2866
            S++A D D R+S T                            EY+A+ E  KE++WLKGL
Sbjct: 1176 SDFAADLDKRRSLT----------------------------EYMAIAETCKESVWLKGL 1207

Query: 2867 VSEIGFLKQNVVVFSDSQSGIQLCKN 2944
             +E+  +   + +F DSQS I L K+
Sbjct: 1208 FAELCGVDSCINLFCDSQSAICLTKD 1233