BLASTX nr result
ID: Rehmannia28_contig00016276
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00016276
(778 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP34010.1| Retrovirus-related Pol polyprotein from transposo... 271 7e-89
gb|KYP66812.1| Retrovirus-related Pol polyprotein from transposo... 287 1e-87
gb|KYP33754.1| Retrovirus-related Pol polyprotein from transposo... 288 4e-87
gb|KYP64004.1| Retrovirus-related Pol polyprotein from transposo... 288 4e-87
gb|KYP46031.1| Retrovirus-related Pol polyprotein from transposo... 278 2e-85
gb|KYP38726.1| Retrovirus-related Pol polyprotein from transposo... 278 3e-85
gb|KYP36435.1| Retrovirus-related Pol polyprotein from transposo... 281 5e-85
gb|KYP31884.1| Copia protein [Cajanus cajan] 262 9e-85
gb|KYP50151.1| Retrovirus-related Pol polyprotein from transposo... 281 1e-84
gb|KYP77961.1| Copia protein [Cajanus cajan] 272 5e-84
gb|KYP35263.1| Retrovirus-related Pol polyprotein from transposo... 270 7e-84
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 282 1e-83
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 281 2e-83
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 281 2e-83
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 281 3e-83
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 281 3e-83
gb|KYP33249.1| Retrovirus-related Pol polyprotein from transposo... 276 5e-83
gb|KYP31691.1| Retrovirus-related Pol polyprotein from transposo... 264 6e-83
gb|KYP70668.1| Retrovirus-related Pol polyprotein from transposo... 266 7e-83
gb|KYP32032.1| Copia protein [Cajanus cajan] 275 2e-82
>gb|KYP34010.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 216
Score = 271 bits (692), Expect = 7e-89
Identities = 130/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)
Frame = +1
Query: 151 VIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWE 330
+IG++ G+ TRS ++ F+SQ+EPK + +AL D HW+ AMQEELNQFERN+VW+
Sbjct: 4 IIGNIGKGVSTRSAIKNICNNMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWD 63
Query: 331 LVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAI 498
LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAPVAR+EAI
Sbjct: 64 LVPLPKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAI 123
Query: 499 RMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLK 678
R+ LAY++ KNF +YQMDVKS FLNGL++EEVYVEQPPG + VYKLKKALYGLK
Sbjct: 124 RLLLAYSSIKNFKLYQMDVKSVFLNGLIQEEVYVEQPPGIVDFKNPNHVYKLKKALYGLK 183
Query: 679 QAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
QAPR+WYD LS+F +N + +GKVD TLF
Sbjct: 184 QAPRSWYDRLSKFFIENDYVRGKVDNTLF 212
>gb|KYP66812.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 900
Score = 287 bits (734), Expect = 1e-87
Identities = 138/216 (63%), Positives = 172/216 (79%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
R+HP E +IGD+ G+ TR+ + F+S+IE K++ +AL+D HWI AMQEELNQF
Sbjct: 354 RNHPLENIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAMQEELNQF 413
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV RPT+ +IGTKW+FRNK++E G V+R LVAKGY QEEGID++ET+AP
Sbjct: 414 ERNQVWDLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGIDYEETYAP 473
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VARLEAIRM LAYA+ +F +YQMDVKSAFLNG ++EEVYVEQPPGFE + V+KLK
Sbjct: 474 VARLEAIRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFPNHVFKLK 533
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KALYGLKQAPRAWY+ LS+FL + FT+GKVD TLF
Sbjct: 534 KALYGLKQAPRAWYERLSKFLLEKEFTRGKVDTTLF 569
>gb|KYP33754.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1011
Score = 288 bits (736), Expect = 4e-87
Identities = 140/223 (62%), Positives = 175/223 (78%), Gaps = 4/223 (1%)
Frame = +1
Query: 109 QPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAM 288
Q + R R+HP E +IGD+ G+ TR+ + F+S+IE K++ +AL+D HWI AM
Sbjct: 458 QREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAM 517
Query: 289 QEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGID 456
QEELNQFERN+VW+LV RPT+ +IGTKW+FRNK++E G V+R LVAKGY QEEGID
Sbjct: 518 QEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGID 577
Query: 457 FDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLG 636
++ET+APVARLEAIRM LAYA+ +F +YQMDVKSAFLNG ++EEVYVEQPPGFE
Sbjct: 578 YEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFP 637
Query: 637 DKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
+ V+KLKKALYGLKQAPRAWY+ LS+FL + FT+GKVD TLF
Sbjct: 638 NHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKVDTTLF 680
>gb|KYP64004.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1021
Score = 288 bits (736), Expect = 4e-87
Identities = 140/223 (62%), Positives = 175/223 (78%), Gaps = 4/223 (1%)
Frame = +1
Query: 109 QPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAM 288
Q + R R+HP E +IGD+ G+ TR+ + F+S+IE K++ +AL+D HWI AM
Sbjct: 468 QREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAM 527
Query: 289 QEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGID 456
QEELNQFERN+VW+LV RPT+ +IGTKW+FRNK++E G V+R LVAKGY QEEGID
Sbjct: 528 QEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGID 587
Query: 457 FDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLG 636
++ET+APVARLEAIRM LAYA+ +F +YQMDVKSAFLNG ++EEVYVEQPPGFE
Sbjct: 588 YEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFP 647
Query: 637 DKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
+ V+KLKKALYGLKQAPRAWY+ LS+FL + FT+GKVD TLF
Sbjct: 648 NHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKVDTTLF 690
>gb|KYP46031.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 772
Score = 278 bits (712), Expect = 2e-85
Identities = 137/224 (61%), Positives = 171/224 (76%), Gaps = 4/224 (1%)
Frame = +1
Query: 106 LQPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQA 285
L + R RD + +IG++ G+ TRS ++ F+SQ+EPK + +AL D HW+ A
Sbjct: 457 LPKEWRTSRDLSMDNIIGNIGKGVSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMA 516
Query: 286 MQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGI 453
MQEELNQFERN+VW+LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGI
Sbjct: 517 MQEELNQFERNEVWDLVPLPKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGI 576
Query: 454 DFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTL 633
D+DETFAPVAR+EAIR+ LAY++ KNF +YQMDVKSAFLNGL++EEVYVEQPPGF
Sbjct: 577 DYDETFAPVARIEAIRLLLAYSSIKNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKN 636
Query: 634 GDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
+ VYKLKKALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 637 PNHVYKLKKALYGLKQAPRSWYDRLSKFLIENDYERGKVDNTLF 680
>gb|KYP38726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 749
Score = 278 bits (710), Expect = 3e-85
Identities = 135/216 (62%), Positives = 168/216 (77%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
RD + +IG++ G+ TRS ++ F+SQ+EPK + +AL D HW+ AMQEELNQF
Sbjct: 204 RDLSMDNIIGNIGKGVSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQF 263
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAP
Sbjct: 264 ERNEVWDLVPLPKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAP 323
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VAR+EAIR+ LAY++ KNF +YQMDVKSAFLNGL++EEVYVEQPPGF + VYKLK
Sbjct: 324 VARIEAIRLLLAYSSIKNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLK 383
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 384 KALYGLKQAPRSWYDRLSKFLIENDYERGKVDNTLF 419
>gb|KYP36435.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 963
Score = 281 bits (719), Expect = 5e-85
Identities = 137/229 (59%), Positives = 173/229 (75%), Gaps = 4/229 (1%)
Frame = +1
Query: 91 NPADLLQPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDT 270
N ++ L + + RD E +IG++ G+ TR ++ F+SQ+EPK + +AL D
Sbjct: 421 NTSEQLPKEWKTSRDLSMENIIGNIGKGVSTRRAIKNICNVMAFVSQVEPKTIDEALQDE 480
Query: 271 HWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYC 438
HW+ AMQEELNQFERN+VW+LV PT +IGTKWVFRNK++E G ++R LVAKGY
Sbjct: 481 HWLMAMQEELNQFERNEVWDLVPLPTDYPIIGTKWVFRNKLDESGIIIRNKARLVAKGYN 540
Query: 439 QEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGF 618
QEEGID+DETFAPVAR+EAIR+ LAY++ NF +YQMDVKSAFLNGL++EEVYVEQPPGF
Sbjct: 541 QEEGIDYDETFAPVARIEAIRLLLAYSSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGF 600
Query: 619 EQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
+ VYKLKKALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 601 VDFKYPNHVYKLKKALYGLKQAPRSWYDRLSKFLIENDYVRGKVDNTLF 649
>gb|KYP31884.1| Copia protein [Cajanus cajan]
Length = 257
Score = 262 bits (669), Expect = 9e-85
Identities = 125/186 (67%), Positives = 151/186 (81%), Gaps = 4/186 (2%)
Frame = +1
Query: 220 FISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNE 399
F+SQ+EPK + +AL D HW+ AMQEELNQFERN+VW LV PT +IGTKWVFRNK++E
Sbjct: 3 FVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWYLVPLPTDYPIIGTKWVFRNKLDE 62
Query: 400 EGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAF 567
G ++R LVAKGY QEEGID+DETFAPVAR+EAIR+ LAY++ NF +YQMDVKSAF
Sbjct: 63 SGIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSIMNFKLYQMDVKSAF 122
Query: 568 LNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGK 747
LNGL++EE+YVEQPPGF + VYKLKKALYGLKQAPR+WYD L +FL +N + +GK
Sbjct: 123 LNGLIQEELYVEQPPGFVDFKNPNHVYKLKKALYGLKQAPRSWYDRLRKFLIENDYVRGK 182
Query: 748 VDRTLF 765
VD TLF
Sbjct: 183 VDNTLF 188
>gb|KYP50151.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1006
Score = 281 bits (718), Expect = 1e-84
Identities = 136/216 (62%), Positives = 170/216 (78%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
RD + +IG++ G+ TRS ++ F+SQ+EPK++ +AL D HW+ AMQEELNQF
Sbjct: 461 RDLSMDNIIGNIGKGVTTRSAIKNICNTMAFVSQVEPKNIDEALKDEHWLMAMQEELNQF 520
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAP
Sbjct: 521 ERNEVWDLVPLPKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAP 580
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VAR+EAIR+ LAY++ KNF +YQMDVKSAFLNGL++EEVYVEQPPGFE + VYKLK
Sbjct: 581 VARIEAIRLLLAYSSLKNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEDFKNPNHVYKLK 640
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 641 KALYGLKQAPRSWYDRLSKFLIENDYERGKVDNTLF 676
>gb|KYP77961.1| Copia protein [Cajanus cajan]
Length = 656
Score = 272 bits (696), Expect = 5e-84
Identities = 133/216 (61%), Positives = 166/216 (76%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
RD + +IG++ G+ TRS ++ F+SQ+EPK + +AL D HW+ AMQEELNQF
Sbjct: 111 RDLSMDNIIGNIGKGVSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQF 170
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAP
Sbjct: 171 ERNEVWDLVPLPKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAP 230
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VAR+EAIR+ LAY++ KNF +YQMDVKS FLNGL++EEVYVEQP GF + VYKLK
Sbjct: 231 VARIEAIRLLLAYSSIKNFKLYQMDVKSVFLNGLIQEEVYVEQPLGFVDFKNPNHVYKLK 290
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 291 KALYGLKQAPRSWYDRLSKFLIENDYERGKVDNTLF 326
>gb|KYP35263.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 570
Score = 270 bits (689), Expect = 7e-84
Identities = 132/216 (61%), Positives = 165/216 (76%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
RD + +IG++ G+ TRS ++ F+SQ+EPK + +AL D HW+ AMQEELNQF
Sbjct: 219 RDLSIDNIIGNIGKGVSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQF 278
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV P +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAP
Sbjct: 279 ERNEVWDLVPLPKDYPIIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAP 338
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VAR+EAIR+ LAY++ NF +YQMDVKSAFLNGL++EEVYVEQPPGF + VYKLK
Sbjct: 339 VARIEAIRLLLAYSSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLK 398
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KAL LKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 399 KALCDLKQAPRSWYDRLSKFLIENDYERGKVDNTLF 434
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 282 bits (721), Expect = 1e-83
Identities = 149/266 (56%), Positives = 181/266 (68%), Gaps = 20/266 (7%)
Frame = +1
Query: 40 LNEDERAVQDNLAARR------------LNPADLLQPD----VRWLRDHPPELVIGDVRD 171
+ ED R + DN+A + +++ QPD R + HP EL+IGD
Sbjct: 986 VEEDVRTLGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNR 1045
Query: 172 GIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTH 351
G+ TRSR +CF+S+IEPK+V +AL D WI AMQEEL QF+RN+VWELV RP
Sbjct: 1046 GVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEG 1105
Query: 352 QNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYA 519
NVIGTKW+F+NK NEEG + R LVA+GY Q EG+DFDETFAPVARLE+IR+ L A
Sbjct: 1106 TNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVA 1165
Query: 520 AHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWY 699
F +YQMDVKSAFLNG L EEVYVEQP GF T D VY+LKKALYGLKQAPRAWY
Sbjct: 1166 CILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWY 1225
Query: 700 DTLSQFLTDNGFTKGKVDRTLFRIQD 777
+ L++FLT G+ KG +D+TLF QD
Sbjct: 1226 ERLTEFLTQQGYRKGGIDKTLFVKQD 1251
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 281 bits (720), Expect = 2e-83
Identities = 147/262 (56%), Positives = 181/262 (69%), Gaps = 4/262 (1%)
Frame = +1
Query: 4 IAESQRQLEGLQLNEDERAVQDNLAARRLNPADLLQPDVRWLRDHPPELVIGDVRDGIRT 183
+A++ + E + N D + N+ N D +P +R + HP EL+IGD G+ T
Sbjct: 998 VADTAKSAENAE-NSDSATDEPNI-----NQPDK-RPSIRIQKMHPKELIIGDPNRGVTT 1050
Query: 184 RSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTHQNVI 363
RSR +CF+S+IEPK+V +AL D WI AMQEEL QF+RN+VWELV RP NVI
Sbjct: 1051 RSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVI 1110
Query: 364 GTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKN 531
GTKW+F+NK NEEG + R LVA+GY Q EG+DFDETFAPVARLE+IR+ L A
Sbjct: 1111 GTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILK 1170
Query: 532 FTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLS 711
F +YQMDVKSAFLNG L EE YVEQP GF T D VY+LKKALYGLKQAPRAWY+ L+
Sbjct: 1171 FKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLT 1230
Query: 712 QFLTDNGFTKGKVDRTLFRIQD 777
+FLT G+ KG +D+TLF QD
Sbjct: 1231 EFLTQQGYRKGGIDKTLFVKQD 1252
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 281 bits (720), Expect = 2e-83
Identities = 147/258 (56%), Positives = 180/258 (69%), Gaps = 4/258 (1%)
Frame = +1
Query: 7 AESQRQLEGLQLNEDERAVQDNLAARRLNPADLLQPDVRWLRDHPPELVIGDVRDGIRTR 186
AES + E ++E A +D + N ++QP + HP EL+IG RTR
Sbjct: 1135 AESNSEAEPSPKVQNESASEDF----QDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTR 1190
Query: 187 SRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTHQNVIG 366
S + E +S IEPK V +AL D WI AMQEELNQF+RN VW+LV +P+ +N+IG
Sbjct: 1191 SHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIG 1250
Query: 367 TKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNF 534
TKWVFRNK+NE+G V R LVA+GY Q+EGID+ ETFAPVARLEAIR+ L+YA +
Sbjct: 1251 TKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGI 1310
Query: 535 TVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQ 714
+YQMDVKSAFLNG++EEEVYV+QPPGFE D VYKLKK+LYGLKQAPRAWYD LS
Sbjct: 1311 ILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSN 1370
Query: 715 FLTDNGFTKGKVDRTLFR 768
FL N F +G+VD TLFR
Sbjct: 1371 FLIKNDFERGQVDTTLFR 1388
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 281 bits (718), Expect = 3e-83
Identities = 143/235 (60%), Positives = 171/235 (72%), Gaps = 8/235 (3%)
Frame = +1
Query: 97 ADLLQPD----VRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALD 264
+++ QPD R + HP EL+IGD G+ TRSR +CF+S+IEPK+V +AL
Sbjct: 1015 SNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALT 1074
Query: 265 DTHWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKG 432
D WI AMQEEL QF+RN+VWELV RP NVIGTKW+F+NK NEEG + R LVA+G
Sbjct: 1075 DEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQG 1134
Query: 433 YCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPP 612
Y Q EG+DFDETFAPVARLE+IR+ L A F +YQMDVKSAFLNG L EEVYVEQP
Sbjct: 1135 YTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPK 1194
Query: 613 GFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLFRIQD 777
GF T D VY+LKKALYGLKQAPRAWY+ L++FLT G+ KG +D+TLF QD
Sbjct: 1195 GFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQD 1249
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 281 bits (718), Expect = 3e-83
Identities = 143/235 (60%), Positives = 171/235 (72%), Gaps = 8/235 (3%)
Frame = +1
Query: 97 ADLLQPD----VRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALD 264
+++ QPD R + HP EL+IGD G+ TRSR +CF+S+IEPK+V +AL
Sbjct: 1017 SNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALT 1076
Query: 265 DTHWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKG 432
D WI AMQEEL QF+RN+VWELV RP NVIGTKW+F+NK NEEG + R LVA+G
Sbjct: 1077 DEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQG 1136
Query: 433 YCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPP 612
Y Q EG+DFDETFAPVARLE+IR+ L A F +YQMDVKSAFLNG L EEVYVEQP
Sbjct: 1137 YTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPK 1196
Query: 613 GFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLFRIQD 777
GF T D VY+LKKALYGLKQAPRAWY+ L++FLT G+ KG +D+TLF QD
Sbjct: 1197 GFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQD 1251
>gb|KYP33249.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1010
Score = 276 bits (707), Expect = 5e-83
Identities = 134/216 (62%), Positives = 167/216 (77%), Gaps = 4/216 (1%)
Frame = +1
Query: 130 RDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 309
+D E +IG++ G+ TR ++ F+SQ+EPK + +AL D HW+ AMQEELNQF
Sbjct: 465 KDLSIENIIGNIGKGVSTRRSIKNICNTMAFVSQVEPKTIDEALHDEHWLMAMQEELNQF 524
Query: 310 ERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYCQEEGIDFDETFAP 477
ERN+VW+LV P+ +IGTKWVFRNK++E G ++R LVAKGY QEEGID+DETFAP
Sbjct: 525 ERNEVWDLVPLPSDYPIIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAP 584
Query: 478 VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 657
VAR+EAIR+ LAYA+ NF +YQMDVKSAFLNGL++EEVYVEQPPGF + VYKLK
Sbjct: 585 VARIEAIRLLLAYASIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKYPNHVYKLK 644
Query: 658 KALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
KALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 645 KALYGLKQAPRSWYDRLSKFLIENDYVRGKVDNTLF 680
>gb|KYP31691.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 462
Score = 264 bits (675), Expect = 6e-83
Identities = 126/186 (67%), Positives = 152/186 (81%), Gaps = 4/186 (2%)
Frame = +1
Query: 220 FISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNE 399
F+SQ+EPK + +AL D HW+ AMQEELNQFERN+VW+LV PT +IGTKWVF NK++E
Sbjct: 3 FVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPTDYPIIGTKWVFINKLDE 62
Query: 400 EGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAF 567
G ++R LVAKGY QEEGID+DETFAP+AR+EAIR+ LAY++ +NF +YQMDVKSAF
Sbjct: 63 SGIIIRNKARLVAKGYNQEEGIDYDETFAPIARIEAIRLLLAYSSIRNFKLYQMDVKSAF 122
Query: 568 LNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGK 747
LNGL++EEVYVEQPPGF VYKLKKALYGLKQAPR+WYD LS+FL +N + KGK
Sbjct: 123 LNGLIQEEVYVEQPPGFIDFKYPHLVYKLKKALYGLKQAPRSWYDRLSKFLIENDYIKGK 182
Query: 748 VDRTLF 765
VD TLF
Sbjct: 183 VDNTLF 188
>gb|KYP70668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 548
Score = 266 bits (681), Expect = 7e-83
Identities = 134/248 (54%), Positives = 174/248 (70%), Gaps = 4/248 (1%)
Frame = +1
Query: 34 LQLNEDERAVQDNLAARRLNPADLLQPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMF 213
L+ +E+ + + ++ L + + RD E +IG++ G TR ++
Sbjct: 132 LETEPNEKPKESESNETTEDTSEQLPKESKTSRDLSMENIIGNIGKGGSTRRVIKNICNT 191
Query: 214 TCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKM 393
F+SQ+EPK + +AL D HW+ MQEELNQFERN+VW+LV P +IGTKWVFRNK
Sbjct: 192 MAFVSQVEPKTIDEALKDEHWLMDMQEELNQFERNEVWDLVPLPNDYPIIGTKWVFRNKF 251
Query: 394 NEEGSVVR----LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKS 561
+E ++R LVAKGY QEEGID+DETFAPVAR+EAIR+ LAY++ NF +YQMDVKS
Sbjct: 252 DESRIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSIMNFKLYQMDVKS 311
Query: 562 AFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTK 741
AFLNGL++EEVYVEQPPGF + VYKLKKALYGLKQAPR+WYD L++FL +N + +
Sbjct: 312 AFLNGLIQEEVYVEQPPGFVDFKYPNHVYKLKKALYGLKQAPRSWYDRLNKFLIENDYVR 371
Query: 742 GKVDRTLF 765
GKVD TLF
Sbjct: 372 GKVDNTLF 379
>gb|KYP32032.1| Copia protein [Cajanus cajan]
Length = 1027
Score = 275 bits (704), Expect = 2e-82
Identities = 134/229 (58%), Positives = 172/229 (75%), Gaps = 4/229 (1%)
Frame = +1
Query: 91 NPADLLQPDVRWLRDHPPELVIGDVRDGIRTRSRAQHEAMFTCFISQIEPKDVSQALDDT 270
N ++ L + + +D E +IG++ + TR ++ F+SQ+EPK + +AL D
Sbjct: 674 NTSEQLPKEWKTSKDLSMENIIGNIGKRVSTRRAIKNICNTMAFVSQVEPKTIDEALKDE 733
Query: 271 HWIQAMQEELNQFERNKVWELVQRPTHQNVIGTKWVFRNKMNEEGSVVR----LVAKGYC 438
HW+ AMQEELNQFERN+ W+LV PT+ +IGTKWVFRNK++E G ++R LVAKGY
Sbjct: 734 HWLMAMQEELNQFERNEAWDLVPLPTNYPIIGTKWVFRNKLDESGIIIRNKARLVAKGYN 793
Query: 439 QEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGF 618
QEEGID+DETFAPVAR+EAIR+ LAY++ NF +YQMDVKSAFLNGL++EEVYVEQPPGF
Sbjct: 794 QEEGIDYDETFAPVARIEAIRLLLAYSSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGF 853
Query: 619 EQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTDNGFTKGKVDRTLF 765
+ VYKLKKALYGLKQAPR+WYD LS+FL +N + +GKVD TLF
Sbjct: 854 VDFKYPNHVYKLKKALYGLKQAPRSWYDRLSKFLIENDYVRGKVDNTLF 902