BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00013607
         (816 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   294   6e-93
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   229   4e-65
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   209   9e-61
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo...   207   2e-60
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   209   9e-60
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...   195   4e-57
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...   199   4e-57
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   206   5e-57
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   205   1e-56
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...   198   4e-56
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   201   2e-55
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        201   3e-55
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   199   1e-54
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     198   3e-54
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     198   3e-54
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   198   4e-54
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   197   4e-54
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     196   2e-53
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   195   3e-53
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         194   4e-53

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Erythranthe guttata]
          Length = 598

 Score =  294 bits (753), Expect = 6e-93
 Identities = 152/256 (59%), Positives = 190/256 (74%), Gaps = 2/256 (0%)
 Frame = -2

Query: 812  GKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITSR 633
            GK++D SNL VFG AAFVH +GDKLEPR  KC+FLGYP+GVKGYRLWL+G+ G+K I SR
Sbjct: 365  GKKVDLSNLHVFGYAAFVHHKGDKLEPRFVKCIFLGYPDGVKGYRLWLKGDFGYKIIISR 424

Query: 632  DVIFNESDFPCLSA-TLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPEN 456
            DVIFNES FPCL+   + +P+S   PN+VEQL         ++  V +  L EN      
Sbjct: 425  DVIFNESGFPCLAVPNVVIPQS--TPNEVEQL-------PIKSDDVSDSELSEN------ 469

Query: 455  VDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDN 279
                 + D  V+L +   ++L +YQLARDR RR ++R+P  FDDF + S+VF+VFES+D 
Sbjct: 470  -----LQDQTVELPN--VDDLSDYQLARDRPRREHVRKPKHFDDFHLASHVFNVFESLDG 522

Query: 278  CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEND 99
             EPK+Y+DALKS+ S EWLN+M++EMNSLHVN TW LVPKP NCS+VDC WLFKVKNE D
Sbjct: 523  NEPKSYKDALKSDKSTEWLNSMNDEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEVD 582

Query: 98   SVRYKARLVAKGFTQK 51
            S++YKARLVAKGFTQK
Sbjct: 583  SIKYKARLVAKGFTQK 598


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  229 bits (584), Expect = 4e-65
 Identities = 124/274 (45%), Positives = 171/274 (62%), Gaps = 5/274 (1%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            +GK  D+ +LKVFGC A+VH + DKLEPR+ KC+FLGYP+GVKGY+LW+  +   K I S
Sbjct: 608  TGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIIS 667

Query: 635  RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENL-PENANMPE 459
            RDV FNE D   +S   P  + E          GL  +       VE+E L PE +   +
Sbjct: 668  RDVTFNEQD---MSKQTPAKDVE----------GLDQL----QFEVEHETLQPEKS---K 707

Query: 458  NVDNAEMHDDLVDLNDNEPEE-LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESID 282
               +    +++V    NEP + L +Y L RDR +R ++ P R+   +M ++  SV E I 
Sbjct: 708  ETSSKTAQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIV 767

Query: 281  NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN-- 108
            + EPKTYQ+A+ S  + +W+ A+ EEM+SL  N TW LV KP++  +V  KW+FK K   
Sbjct: 768  DMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGT 827

Query: 107  -ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
              N++ RYKARLVAKGF+QKEG+DY EIF+PVVK
Sbjct: 828  LGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVK 861


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  209 bits (531), Expect = 9e-61
 Identities = 120/274 (43%), Positives = 167/274 (60%), Gaps = 5/274 (1%)
 Frame = -2

Query: 815 SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF-KAIT 639
           SG+++D+S L+VFGC A+ H + DKLEPR+ K +F+GYPEGVKGYRLW   EPG+ K + 
Sbjct: 178 SGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIGYPEGVKGYRLWCL-EPGYKKCLI 236

Query: 638 SRDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPE 459
           SRDV+FNE +   L            P+KVE  +     D+T  + VE   + E     +
Sbjct: 237 SRDVVFNEIEMANL----------VKPSKVE--IHEKSQDQTIKIEVEFTVITE----AK 280

Query: 458 NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSV-FESID 282
                + H    +L+D E   + +Y LARDR RR  + P R+    ++S+ F+V  +  D
Sbjct: 281 AATQRQQHILQQELDDEE-RSIQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLED 339

Query: 281 NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN-- 108
           + EPK+Y +A++S+    WL AM EEM SL  N TWILV KP+   +V  KW+FK K   
Sbjct: 340 HDEPKSYSEAMRSKDKNSWLKAMKEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGI 399

Query: 107 -ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
              +  R+K RLVA+GFTQ+EG+DY EIF+PVVK
Sbjct: 400 LGIEKARFKERLVARGFTQREGLDYKEIFSPVVK 433


>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 498

 Score =  207 bits (527), Expect = 2e-60
 Identities = 108/271 (39%), Positives = 155/271 (57%), Gaps = 3/271 (1%)
 Frame = -2

Query: 812 GKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITSR 633
           GK +D+SNL+VFG  A+ H +  KLEPR+ KCVF+GYP+GVKGY+LW   + G K I SR
Sbjct: 232 GKPVDYSNLRVFGSLAYAHVKEGKLEPRAVKCVFIGYPDGVKGYKLWKLEKGGGKCIISR 291

Query: 632 DVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPENV 453
           DV F+E+    L              ++E+     H+         +  + +  N  E  
Sbjct: 292 DVTFDETKLGILEE-----------QQMEESSSKDHVQFEVESSTHSSEINQTENSEEIT 340

Query: 452 DNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCE 273
           D A    ++        +++ +YQL RDR RR  +  +R+    +I Y  +    +   E
Sbjct: 341 DGASSSGEVA-----RNQDISSYQLVRDRARRVPKPSSRYGYADLICYALNTANEVQGFE 395

Query: 272 PKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV 93
           PKTY++A++S  +Q+W+ A+HEEM SL  N TW LV  P    ++ CKW+FK K+    V
Sbjct: 396 PKTYKEAMESSEAQDWMKAVHEEMKSLQKNLTWKLVSLPTGKKVISCKWIFKRKDGIPGV 455

Query: 92  ---RYKARLVAKGFTQKEGIDYTEIFAPVVK 9
              R+KARLVA+GFTQ EG+DY EIF+PVVK
Sbjct: 456 EAPRFKARLVARGFTQVEGVDYNEIFSPVVK 486


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 634

 Score =  209 bits (531), Expect = 9e-60
 Identities = 120/274 (43%), Positives = 167/274 (60%), Gaps = 5/274 (1%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF-KAIT 639
            SG+++D+S L+VFGC A+ H + DKLEPR+ K +F+GYPEGVKGYRLW   EPG+ K + 
Sbjct: 296  SGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIGYPEGVKGYRLWCL-EPGYKKCLI 354

Query: 638  SRDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPE 459
            SRDV+FNE +   L            P+KVE  +     D+T  + VE   + E     +
Sbjct: 355  SRDVVFNEIEMANL----------VKPSKVE--IHEKSQDQTIKIEVEFTVITE----AK 398

Query: 458  NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSV-FESID 282
                 + H    +L+D E   + +Y LARDR RR  + P R+    ++S+ F+V  +  D
Sbjct: 399  AATQRQQHILQQELDDEE-RSIQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLED 457

Query: 281  NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN-- 108
            + EPK+Y +A++S+    WL AM EEM SL  N TWILV KP+   +V  KW+FK K   
Sbjct: 458  HDEPKSYSEAMRSKDKNSWLKAMKEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGI 517

Query: 107  -ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
               +  R+K RLVA+GFTQ+EG+DY EIF+PVVK
Sbjct: 518  LGIEKARFKERLVARGFTQREGLDYKEIFSPVVK 551


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score =  195 bits (495), Expect = 4e-57
 Identities = 111/273 (40%), Positives = 166/273 (60%), Gaps = 4/273 (1%)
 Frame = -2

Query: 815 SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
           +G + D S+L+ F C+A+VH   DK  PR+ K VF+GYP G+KGYR+WL  E   K  TS
Sbjct: 40  AGTKPDLSHLRRFECSAYVHVTQDKTSPRAVKGVFMGYPFGIKGYRVWLPEEG--KCTTS 97

Query: 635 RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPEN 456
           R+V+FNE +      TL  P+               + D  ++     E    ++   EN
Sbjct: 98  RNVVFNEIEL--YKGTLSSPDGRT-----------DYYDLEDSSSQGGETSSSSSESSEN 144

Query: 455 VDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDN 279
           ++ +E +++ VD ++NE + L +Y LAR+R RR NIR P+RF D   ++Y  +  E ++ 
Sbjct: 145 LEESETNEE-VDGSENE-QSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEI 202

Query: 278 CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---N 108
            EPK+Y++A+K    ++W +AM EEM+S   ++TW L+ KPE   L+ CKW+FK+K    
Sbjct: 203 EEPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIP 262

Query: 107 ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
             +  RYK RLVAKGF+Q+EGIDY E+F+ VVK
Sbjct: 263 GLEKQRYKVRLVAKGFSQQEGIDYNEVFSLVVK 295


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score =  199 bits (507), Expect = 4e-57
 Identities = 119/279 (42%), Positives = 153/279 (54%), Gaps = 10/279 (3%)
 Frame = -2

Query: 815 SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLW-LRGEPGFKAIT 639
           SGK  D+S L++FGC A+ H    KLEPR+ KC+FLGYP GVKGYRLW        K + 
Sbjct: 29  SGKPSDYSGLRIFGCPAYAHVNDGKLEPRAMKCIFLGYPTGVKGYRLWCTENNRTKKIVI 88

Query: 638 SRDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPE 459
           SRDV FNES            + E   N          + +     VE+ N  EN N  E
Sbjct: 89  SRDVTFNESAM--------FGQKEEVENLAGNKSTNKGVHQKVEFEVEDSN-KENLNPVE 139

Query: 458 NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDF------QMISYVFSV 297
              N +           EP+      +A  RTRR IR+PTR+ D         ++Y   V
Sbjct: 140 QSSNVQ----------EEPQ-----SIATRRTRREIRKPTRYADVTNVVDTNSVAYALLV 184

Query: 296 FESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFK 117
            E++D+ EPK+Y++A++S+ + +WL AM EEM SL  N TW LVP P     V CKW+ K
Sbjct: 185 GENLDSDEPKSYKEAIQSKEASKWLIAMDEEMQSLKKNQTWELVPLPRGVKPVGCKWVLK 244

Query: 116 VKNENDSV---RYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K     V   R+KARLVAKGF+QKEGIDY E+F+PVVK
Sbjct: 245 RKEGIPGVEPSRFKARLVAKGFSQKEGIDYHEVFSPVVK 283


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  206 bits (524), Expect = 5e-57
 Identities = 121/289 (41%), Positives = 178/289 (61%), Gaps = 20/289 (6%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            +G + D S+L+ FGC+A+VH   DK  PR+ K VF+GYP G+KGYR+WL  E   K  TS
Sbjct: 539  TGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGYPCGIKGYRVWLPKEG--KCTTS 596

Query: 635  RDVIFNESDF---PCLSATLPLPESEPAPNKVEQL---LGLSH----------IDETENL 504
            R+V+FNE++       SA     E+E    K+++    +  SH           D  ++ 
Sbjct: 597  RNVVFNETELYKDTLSSADERKEEAEKEYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSS 656

Query: 503  HVENENLPENANMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDD 327
                E    ++   EN++ +EM++++V  ++NE + L +Y LARD  RR NIR P+RF+D
Sbjct: 657  SQGGETSSSSSESSENLEESEMNEEVVG-SENE-QSLDDYLLARDMKRRSNIRPPSRFED 714

Query: 326  FQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENC 147
               ++Y  +  E ++  EPK+Y++ALKS   ++W NAM EEM+S   ++TW L+ KPE  
Sbjct: 715  EDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQ 774

Query: 146  SLVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYTEIFAPVVK 9
             L+ CKW+FK+K     V   RYKARLVAKGF+Q+EGIDY E+F+ VVK
Sbjct: 775  KLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVFSLVVK 823


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  205 bits (521), Expect = 1e-56
 Identities = 118/278 (42%), Positives = 161/278 (57%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY  GVKGYRLW   +   K I S
Sbjct: 749  SGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIIS 808

Query: 635  RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPEN 456
            RDV F+ES                   +   L G S  D   N  VE E    +A M   
Sbjct: 809  RDVTFDES------------AMFGQRKEFGDLAGTSKTDLGANQKVEFE---VDAPMENG 853

Query: 455  VDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDD------FQMISYVFSVF 294
            VD+      ++D ND++        +A  R RR IR+P R+ D         +++  +V 
Sbjct: 854  VDDTSEEQPVIDQNDSQ-------SIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVA 906

Query: 293  ESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
            E I   EP++Y++A++S+ S++WL++M +EM SL  N TW LVP PE    VDCKWLFK+
Sbjct: 907  EEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKI 966

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + ++  +YK+RLVAKGF+QKEGIDY E+F+PVVK
Sbjct: 967  KDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVK 1004


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 595

 Score =  198 bits (504), Expect = 4e-56
 Identities = 109/275 (39%), Positives = 161/275 (58%), Gaps = 4/275 (1%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            +GK  ++SNL+VFGC A+ H    KL PRS+KC+F+GY +GVKGYR+W   E   K I S
Sbjct: 263  TGKPTNYSNLRVFGCNAYYHVNEGKLLPRSRKCLFMGYGDGVKGYRIWSPSEK--KVILS 320

Query: 635  RDVIFNESDFPCLSATLPLPESEPA-PNKVEQLLGLSHIDETENLHVENENLPENANMPE 459
            RDVIF+ES        +P+  +  + P +V ++  +S   E ++L  +     +     E
Sbjct: 321  RDVIFDESHLFHPKLEVPITATHNSHPPQVGKVESISEKTEDKDLLDKFSEASQEEEQSE 380

Query: 458  NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDN 279
            N    E H +       EP+ +        + +R I+ P R+    M +Y     E ID+
Sbjct: 381  NSSANESHQNA------EPDSIQLNPGISQKPKRVIKPPERYGFEDMATYALHAAEEIDS 434

Query: 278  CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---N 108
             EP TY++A+    +++W+ AM EEM SL+ N TW LV  P+   +V CKW++K K   +
Sbjct: 435  DEPTTYKEAISHPEAEKWILAMREEMESLYKNQTWKLVELPKGRHVVGCKWIYKKKSIFS 494

Query: 107  ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVKFT 3
            E + +RYKARLVAKGF+QKEG+D+ EIF+PVV+ T
Sbjct: 495  EKEEIRYKARLVAKGFSQKEGVDFNEIFSPVVRHT 529


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  201 bits (512), Expect = 2e-55
 Identities = 112/278 (40%), Positives = 164/278 (58%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVKGY+LW       K + S
Sbjct: 857  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 914

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E E++ +         N
Sbjct: 915  RNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLISSGHAPEKEDVAI---------N 963

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
              E V        + D N +  ++     +A+DR +RNI+ P R+ ++  +++Y  SV E
Sbjct: 964  QDEPV--------IEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAE 1015

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  P+    + CKW+FK 
Sbjct: 1016 EIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKR 1075

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D  RYKARL+AKG++Q  GID+ ++F+PVVK
Sbjct: 1076 KEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVK 1113


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  201 bits (511), Expect = 3e-55
 Identities = 113/277 (40%), Positives = 166/277 (59%), Gaps = 8/277 (2%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            +GK  ++ NL+VFGC A++H    KLE R+ K VF+GYP+GVKGY++W + +   K I S
Sbjct: 640  NGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVS 697

Query: 635  RDVIFNESDFPCLSATLPLP-ESEPAPNKVEQLLGLSHIDETENLHVE---NENLPENAN 468
            RDV+F+ES     SA      +  PA NK           ET  ++VE   +++  + A 
Sbjct: 698  RDVVFHESVLLKESAEHDAGLQDNPAANKRSG-------SETSKVNVELLTDKSSEKEAA 750

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFES 288
              +    AE  +   ++++    +L NYQLARDR RR +R P R+    +I+Y     + 
Sbjct: 751  SDDERATAESEEH--EVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADE 808

Query: 287  IDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN 108
            +   EP  + +A++S H  +WL AM +EM SL  N TW L+P P N  L++CKW+FK +N
Sbjct: 809  VTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RN 867

Query: 107  EN----DSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            E     +  +YKARLVA+GFTQ+EG+D+ EIF+PVVK
Sbjct: 868  EGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVK 904


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  199 bits (507), Expect = 1e-54
 Identities = 111/275 (40%), Positives = 164/275 (59%), Gaps = 4/275 (1%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SGK  D+SNLK FGC A+ H    KLEPR+KK VF+GY +GVKG+R+W   E   + I S
Sbjct: 628  SGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMS 685

Query: 635  RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPEN 456
            R+V+F+ES    L  T+  P +      +++        + E   ++NE+   +   PE 
Sbjct: 686  RNVVFDESP---LLRTIVKPTTTSETGSLDK--------QVEFQVIQNES---DLKEPEE 731

Query: 455  VDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDN 279
             D     +   D+ ++ P ++ +  +A+DR RR  +R PTR+    M+ Y   V E +D 
Sbjct: 732  EDQEPQTE--TDIPESMPSDI-HQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDT 788

Query: 278  CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---N 108
             EP TY++A+ S  S++W  AM +EM SLH N TW LV +P    ++ CKW+FK K   +
Sbjct: 789  SEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGIS 848

Query: 107  ENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVKFT 3
              + V+YKAR+VA+GF Q+EG+DY EIF+PVV+ T
Sbjct: 849  PAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHT 883


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  198 bits (504), Expect = 3e-54
 Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY  GVKGY+LW       K + S
Sbjct: 622  SGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETK--KVVIS 679

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E E++ +      ++A 
Sbjct: 680  RNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSGHAPEKEDVAIN-----QDAP 732

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
            + E+ D++ +H          P+      +A+D+ +RNI+ P R+ ++ ++++Y  SV E
Sbjct: 733  VIEDSDSSIVH--------QSPKR----SIAKDKPKRNIKPPRRYIEEAKIVAYALSVAE 780

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  P+    + CKW+FK 
Sbjct: 781  KIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKR 840

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D  RYKARLVAKG++Q  GID+ ++F+PVVK
Sbjct: 841  KEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVK 878


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  198 bits (503), Expect = 3e-54
 Identities = 108/278 (38%), Positives = 164/278 (58%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVKGY+LW       K + S
Sbjct: 685  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 742

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E EN+ + N++ P    
Sbjct: 743  RNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSGHAPEKENVAI-NQDAPV--- 796

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
                         + D + +  ++     +A+D+ +RNI+ P R+ ++  +++Y  SV E
Sbjct: 797  -------------IEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAE 843

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW  V  P+    + CKW+FK 
Sbjct: 844  EIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKR 903

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D  RYKARLVAKG++Q  GID+ ++F+P++K
Sbjct: 904  KEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMK 941


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  198 bits (503), Expect = 4e-54
 Identities = 108/278 (38%), Positives = 164/278 (58%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVKGY+LW       K + S
Sbjct: 685  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 742

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E EN+ + N++ P    
Sbjct: 743  RNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSGHAPEKENVAI-NQDAPV--- 796

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
                         + D + +  ++     +A+D+ +RNI+ P R+ ++  +++Y  SV E
Sbjct: 797  -------------IEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAE 843

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW  V  P+    + CKW+FK 
Sbjct: 844  EIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKR 903

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D  RYKARLVAKG++Q  GID+ ++F+P++K
Sbjct: 904  KEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMK 941


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  197 bits (502), Expect = 4e-54
 Identities = 113/275 (41%), Positives = 158/275 (57%), Gaps = 4/275 (1%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG  ID+SNL++FGC A+ H    KL PR+ KC+FLGY    KGYRLW       + I S
Sbjct: 341  SGNPIDYSNLRIFGCPAYAHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILS 400

Query: 635  RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENANMPEN 456
            RDV FNE     LS+     +S  + +    L G S     E + +E +++  N ++P +
Sbjct: 401  RDVTFNED--ALLSSG---KQSSVSSSSTNNLQGTS-----EKVELELKSVAPNVDVPSS 450

Query: 455  VDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI-DN 279
                   DD  D  D+  ++   Y +ARDRTRR I+ P R+ D  + +Y  S+ + + D+
Sbjct: 451  STTESSIDDHGD--DHPIQQQEEYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDD 508

Query: 278  CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEND 99
             EP +Y +A+    S +WL AM+EE+ SLH NNTW L   P+    + CKW++K K+   
Sbjct: 509  VEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIP 568

Query: 98   SV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFT 3
             V   R KARLV KGF QKEGID+ EIF+PVV+ T
Sbjct: 569  GVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHT 603


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  196 bits (498), Expect = 2e-53
 Identities = 108/278 (38%), Positives = 167/278 (60%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVK Y+LW       K + S
Sbjct: 529  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTK--KVVIS 586

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E E++ +      ++A+
Sbjct: 587  RNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLISSGHAPEKEDVAIN-----QDAS 639

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
            + E+ D++ +            ++     +A+D+ +RNI+ P R+ ++  +++Y  SV E
Sbjct: 640  VIEDSDSSAV------------QQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAE 687

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  P+    + CKW+FK 
Sbjct: 688  EIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKR 747

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D  RYKARLVAKG++Q  GID+ ++F+PV+K
Sbjct: 748  KKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLK 785


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  195 bits (496), Expect = 3e-53
 Identities = 111/278 (39%), Positives = 166/278 (59%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            +G   D+  LK FG  A++H    KL PR+KK +FLGYP+GVK +++WL  +   K + S
Sbjct: 643  TGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDR--KCVVS 700

Query: 635  RDVIFNESDFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPE---NANM 465
            RD++F E+          + E +    +VE+ L      E +NL  ++EN  E   N+N 
Sbjct: 701  RDIVFQENQMYKELQKNDMSEEDKQLTEVERTL-----IELKNLSADDENQSEGGDNSNQ 755

Query: 464  PE-NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF--DDFQMISYVFSVF 294
             + +   +   D  V+  D++ + L NY LARDR RR IR P RF  +D  ++ +  ++ 
Sbjct: 756  EQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMT 815

Query: 293  ESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
            E  +  EP+TY++A++S   ++W  A  EEM+S+  N+TW ++ KPE   ++ CKW+FK 
Sbjct: 816  EDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKR 875

Query: 113  KNENDSV---RYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K     V   RYKARLVAKGF+Q+EGIDY EIF+PVVK
Sbjct: 876  KAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVK 913


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  194 bits (494), Expect = 4e-53
 Identities = 107/278 (38%), Positives = 164/278 (58%), Gaps = 9/278 (3%)
 Frame = -2

Query: 815  SGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKAITS 636
            S   +++S+L+VFGC A+ H    KLEPR+ KC+FLGYP G+KGY+LW       K + S
Sbjct: 432  SDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGMKGYKLWCPKTK--KVVIS 489

Query: 635  RDVIFNES----DFPCLSATLPLPESEPAPNKVEQLLGLSHIDETENLHVENENLPENAN 468
            R+V+F+ES    D P  S  +P+   E A  +VE L+   H  E EN+ + N+++P    
Sbjct: 490  RNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLISSGHAPEKENVAI-NQDVPV--- 543

Query: 467  MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFE 291
                         + D + +  ++     +A+D+ +RN + P R+ ++  +++Y  SV E
Sbjct: 544  -------------IEDSDSSTVQQSPKRFIAKDKPKRNTKPPQRYIEEANIVAYALSVAE 590

Query: 290  SID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKV 114
             I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  P+    + CKW+FK 
Sbjct: 591  DIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKR 650

Query: 113  K---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVK 9
            K   + +D   YKARLVAKG++Q  GID+ ++F+PVVK
Sbjct: 651  KKGISPSDEAMYKARLVAKGYSQIPGIDFNDVFSPVVK 688