BLASTX nr result
ID: Rehmannia28_contig00012277
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00012277
(2381 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009104375.1| putative polymerase [Cassava Ivorian bacilli... 995 0.0
ref|YP_006576519.1| replication protein 2a [Amazon lily mild mot... 991 0.0
gb|AHG25372.3| replicase [Pelargonium zonate spot virus] 635 0.0
ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot vi... 634 0.0
gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus] 634 0.0
emb|CAA41362.1| 2a protein [Brome mosaic virus] 476 e-153
gb|ABF83486.1| 2a protein [Brome mosaic virus] 476 e-153
dbj|BAJ41521.1| 2a protein [Brome mosaic virus] 475 e-153
gb|ADW09018.1| polymerase 2a [Brome mosaic virus] 474 e-152
ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic viru... 473 e-152
ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus] gi|1... 468 e-150
gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus] 467 e-150
gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus] 467 e-150
gb|AHA10985.1| 2a protein [Tomato aspermy virus] 467 e-149
ref|NP_620761.1| 2a protein [Tomato aspermy virus] gi|137276|sp|... 467 e-149
gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus] 461 e-147
gb|ADR82074.1| 2a protein [Tomato aspermy virus] 461 e-147
ref|YP_002640501.1| 2a protein [Gayfeather mild mottle virus] gi... 459 e-147
emb|CAJ65581.1| RNA-dependent RNA polymerase [Cucumber mosaic vi... 460 e-146
emb|CAI30263.2| replicase protein [Cucumber mosaic virus] 457 e-146
>ref|YP_009104375.1| putative polymerase [Cassava Ivorian bacilliform virus]
gi|586908845|gb|AHJ89006.1| putative polymerase [Cassava
Ivorian bacilliform virus]
Length = 680
Score = 995 bits (2573), Expect = 0.0
Identities = 506/711 (71%), Positives = 568/711 (79%), Gaps = 10/711 (1%)
Frame = -1
Query: 2336 MDLFMMFNSGLLNANCESLIRYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLV 2157
MD+F +FN G L+A+ + R+VKLGF + FDQ+ + +EM+E+LS +L VSVDRLLV
Sbjct: 1 MDVFALFNGGFLSADNVDIFRFVKLGFRPEDFDQSDFSTKVEMAEILSPELGVSVDRLLV 60
Query: 2156 ALFNGTDLADLEPDLEVCHEGLG-FESAHTVDCASMTDYLT--------TIEVTFPVRPD 2004
L NG DLAD+EP+ E+ E LG F S + V S D T T+E + +
Sbjct: 61 GLINGEDLADIEPE-EITEESLGEFVSDNVV---SFDDLFTRFSSVSESTVETELSAKAE 116
Query: 2003 MDSSQTEPLVLQIXXXXXXXXXXXXXXXXXTLIKDLESDFPLVHSESEVRLMETSYGSHF 1824
+ S V+ +LES LV E RLMET YG HF
Sbjct: 117 VSVSDGLSSVV-----------------------NLES---LV--EGSDRLMETGYGDHF 148
Query: 1823 TLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILP 1644
TLVQEEF+EE P A++N+A P+ QI CD+E PIP+ GRSDRV LEKLQ TVD+ILP
Sbjct: 149 TLVQEEFVEEIPMASLNIAPVVPLEQIFSCDIEQPIPLTKGRSDRVCLEKLQATVDSILP 208
Query: 1643 THARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQK 1464
TH+RFDDTFHQAFVEN DI+LDF+RI+LKQY GDWY+DPD FY+P L SGGCARR+G+QK
Sbjct: 209 THSRFDDTFHQAFVENSDINLDFERIKLKQYTGDWYRDPDRFYEPALKSGGCARRVGTQK 268
Query: 1463 EALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWAD 1284
EALIAIRKRNADVPELAGSV+ID+ AKW AD F K++V ++ PL QVM+RM+AY KW D
Sbjct: 269 EALIAIRKRNADVPELAGSVDIDKTAKWVADVFFKSYVSSLKPLEQVMSRMKAYCDKWKD 328
Query: 1283 RVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTAL 1104
RVDPL VL TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDK+ C+NFSPWFTAL
Sbjct: 329 RVDPLAVLSGTNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKITCANFSPWFTAL 388
Query: 1103 FDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRL 924
FDGFQKSL RVRIPSGPISTLEM YGFKNKYYVEIDLSKFDKSQGELHLEFQRL+LLRL
Sbjct: 389 FDGFQKSLIDRVRIPSGPISTLEMNYGFKNKYYVEIDLSKFDKSQGELHLEFQRLLLLRL 448
Query: 923 GLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCS 744
GLPAHLVNWWCELH++S++SDPNAGVAF CAYQRRTGDAFTYFGNTLVTMAEFACCFDCS
Sbjct: 449 GLPAHLVNWWCELHIKSFISDPNAGVAFPCAYQRRTGDAFTYFGNTLVTMAEFACCFDCS 508
Query: 743 QFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFS 564
QFE MLFSGDDSLAVSNNPI GDTDLF SLFNMESK M +PVPYICSKFLIEDSFG SFS
Sbjct: 509 QFEIMLFSGDDSLAVSNNPIAGDTDLFTSLFNMESKSMEDPVPYICSKFLIEDSFGRSFS 568
Query: 563 VPDPIREFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNK 384
VPDPIREFQRLGKKKI +Q + D LFEQYQGFRDRMKYLRH+DD MIDQLKVYFDMKY K
Sbjct: 569 VPDPIREFQRLGKKKILIQPNCDPLFEQYQGFRDRMKYLRHMDDFMIDQLKVYFDMKYKK 628
Query: 383 GKDCIDDFLGGCIYYADNFKHFCELYNT-HAVEVRALVTLVDKGSLRLPSR 234
GKDCIDDFLGGCIYYADNF+HF EL+ T A+EV+ALV LVDKG L LPSR
Sbjct: 629 GKDCIDDFLGGCIYYADNFQHFKELFFTPQAIEVKALVNLVDKGCLGLPSR 679
>ref|YP_006576519.1| replication protein 2a [Amazon lily mild mottle virus]
gi|398650494|dbj|BAM34544.1| replication protein 2a
[Amazon lily mild mottle virus]
Length = 657
Score = 991 bits (2561), Expect = 0.0
Identities = 492/650 (75%), Positives = 552/650 (84%), Gaps = 4/650 (0%)
Frame = -1
Query: 2168 RLLVALFNGTDLADLEPDL--EVCHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS 1995
+L+ ALF G D++D+ P++ EVC F S H +D +S++ + +++ ++ D+
Sbjct: 14 KLVAALFRGEDISDISPEVVTEVCDGS--FVSYHCLD-SSVSPFDVCVDILDTIKNDV-- 68
Query: 1994 SQTEPLVLQIXXXXXXXXXXXXXXXXXTLIKDLESDFPLVHSESEVRLMETSYGSHFTLV 1815
S + V+ L +D + V +E RLME+SYG+HFTLV
Sbjct: 69 SVVDDCVVTTSDEEVTSERLERVKRTLDL-EDCVVNSCSVCTEGNERLMESSYGNHFTLV 127
Query: 1814 QEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHA 1635
EEFIEECPAAAINVA+ P+ Q ECDL P+P+L GRSDRV+LEKLQ TVDAILPTHA
Sbjct: 128 GEEFIEECPAAAINVASVVPIDQQFECDLTAPLPVLKGRSDRVTLEKLQTTVDAILPTHA 187
Query: 1634 RFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEAL 1455
RFDDTFHQAFVEN D+SLDF+RIRLKQYAGDWY+DPD FY+P L SGGC+RR+GSQKEAL
Sbjct: 188 RFDDTFHQAFVENADVSLDFERIRLKQYAGDWYRDPDNFYEPVLKSGGCSRRVGSQKEAL 247
Query: 1454 IAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVD 1275
IAIRKRNADVPELAGSVNID+VA+WAADNFMK+FVVNV+PLVQVM++M+AYM KW+DRVD
Sbjct: 248 IAIRKRNADVPELAGSVNIDQVAEWAADNFMKSFVVNVSPLVQVMSKMKAYMEKWSDRVD 307
Query: 1274 PLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDG 1095
PL VLGETNLQRYQHMIKTDVKP+ DGMNLERA+PATITFHDKMVCSNFSPWFTALFDG
Sbjct: 308 PLMVLGETNLQRYQHMIKTDVKPITNDGMNLERAIPATITFHDKMVCSNFSPWFTALFDG 367
Query: 1094 FQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP 915
QKSLNSRVRIPSGPISTLEM YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP
Sbjct: 368 LQKSLNSRVRIPSGPISTLEMHYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP 427
Query: 914 AHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFE 735
AHLVNWWCELH+RS++SDP AGVAFQCAYQRRTGDAFT+FGNTLVTMAEFACCFDCSQFE
Sbjct: 428 AHLVNWWCELHIRSFISDPTAGVAFQCAYQRRTGDAFTFFGNTLVTMAEFACCFDCSQFE 487
Query: 734 CMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPD 555
MLF+GDDSLAVSN+PITGDTDLF SLFNMESK MANPVPYICSKFLIED FGNSFSVPD
Sbjct: 488 MMLFAGDDSLAVSNSPITGDTDLFTSLFNMESKSMANPVPYICSKFLIEDCFGNSFSVPD 547
Query: 554 PIREFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKD 375
PIREFQRLGKKKIQ+Q DALFEQYQGFRDRMKYLRHLDD MIDQLKVYFD+KYNKGKD
Sbjct: 548 PIREFQRLGKKKIQIQPRADALFEQYQGFRDRMKYLRHLDDFMIDQLKVYFDIKYNKGKD 607
Query: 374 CIDDFLGGCIYYADNFKHFCELY--NTHAVEVRALVTLVDKGSLRLPSRI 231
CIDDFLGGCIYYADNFKHFCEL+ ++HA+EV ALV VD L +PSR+
Sbjct: 608 CIDDFLGGCIYYADNFKHFCELFVNHSHAIEVGALVNFVDDKPLGIPSRL 657
>gb|AHG25372.3| replicase [Pelargonium zonate spot virus]
Length = 687
Score = 635 bits (1639), Expect = 0.0
Identities = 334/685 (48%), Positives = 453/685 (66%), Gaps = 6/685 (0%)
Frame = -1
Query: 2276 RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLA---DLEPDLEV 2106
++ LG + +D+ W++ ++ + Q + S D LV L+N +L D E EV
Sbjct: 21 KFKALGLNTEDYDEQRWELLVKCVDSGLMQFSCSRDEALVLLWNEEELPRDDDDEVPYEV 80
Query: 2105 CHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 1929
E+ D + T++ D + S+T VL +
Sbjct: 81 PCWAPDTEATLIDDVSEWLVGKTSVRDAVTACSDYVAVSETPVEVLSVE----------- 129
Query: 1928 XXXXXTLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 1749
L +D E D ++ + S+ +FT+V+EEF+EE P ++N PV
Sbjct: 130 ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPVR 180
Query: 1748 QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 1572
L+ P+ + GR DRV+LE LQ ++ LP+HA FDDT+HQ FVE + +DFD
Sbjct: 181 TFEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDFD 240
Query: 1571 RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 1392
IRL+Q +D D +YQP L +G +RRIG+QKEAL+AIRKRNADVPELA SV+++
Sbjct: 241 NIRLRQSEVFCDRDLDKYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300
Query: 1391 VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1212
+++ A F+ ++V ++ P+V VM +M+AY KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301 LSESVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360
Query: 1211 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1032
KP VA M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361 KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420
Query: 1031 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 852
+ +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP HL NWWC+ H +S++SDP A
Sbjct: 421 DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTHLANWWCDFHYKSFISDPRA 480
Query: 851 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 672
V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D QFE MLF+GDDSLA+S++PI G +
Sbjct: 481 KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540
Query: 671 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 492
D F SLFNME+K+M VPYICSKFL+ D G FS PDPIREFQRLGKKKI + DA
Sbjct: 541 DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599
Query: 491 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 312
LFEQY GF+DRM ++R+ + I QLK++F++KY + + I+D++G C++Y+DNFK+F
Sbjct: 600 LFEQYVGFKDRMSHMRNFSEHEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659
Query: 311 LY-NTHAVEVRALVTLVDKGSLRLP 240
L+ T+A V AL V RLP
Sbjct: 660 LFTKTNAPLVAALNKRVKDKPFRLP 684
>ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot virus]
gi|81968684|sp|Q9DUT2.1|RDRP_PZSVT RecName:
Full=RNA-directed RNA polymerase 2a; Short=protein 2a
gi|10185104|emb|CAC08527.1| putative 2a protein
[Pelargonium zonate spot virus]
Length = 687
Score = 634 bits (1635), Expect = 0.0
Identities = 339/686 (49%), Positives = 460/686 (67%), Gaps = 7/686 (1%)
Frame = -1
Query: 2276 RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLADLEPDLEVCHE 2097
++ LG + +D+ W++ ++ + Q + S D LV L+N +L + D EV +E
Sbjct: 21 KFRALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDDDD-EVPYE 79
Query: 2096 GLGF--ESAHTV--DCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXX 1932
+ ++ TV D + T++ T V D D+ S+T VL +
Sbjct: 80 VPCWTPDTDATVIDDVSEWLAEKTSVRDTVVVCSDYDAVSETPVEVLSVE---------- 129
Query: 1931 XXXXXXTLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPV 1752
L +D E D ++ + S+ +FT+V+EEF+EE P ++N PV
Sbjct: 130 -------LEEDSEED---TIADVCLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPV 179
Query: 1751 MQITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDF 1575
LE P+ + GR DRV+LE LQ ++ LP+HA FDDT+HQ FVE + +DF
Sbjct: 180 RTHEVTSLEKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDF 239
Query: 1574 DRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNID 1395
D IRL+Q +D D +YQP L +G +RRIG+QKEAL+AIRKRNADVPELA SV+++
Sbjct: 240 DNIRLRQSEVFCDRDLDRYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVE 299
Query: 1394 EVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTD 1215
+++ A F+ ++V ++ P+V VM +M+AY KW D++DP+F+L E NLQRY+HMIKTD
Sbjct: 300 RLSESVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTD 359
Query: 1214 VKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLE 1035
VKP VA M++ERA+PATITFH K +C+ FSP FTALFD FQKSL+ RV IPSGPIST+E
Sbjct: 360 VKPTVAHSMHVERAIPATITFHGKSICAGFSPSFTALFDEFQKSLDERVVIPSGPISTIE 419
Query: 1034 MKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPN 855
M + +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLPAHL NWWC+ H +S++SDP
Sbjct: 420 MDFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPAHLANWWCDFHYKSFISDPR 479
Query: 854 AGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGD 675
A V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D QFE MLF+GDDSLA+S++PI G
Sbjct: 480 AKVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGC 539
Query: 674 TDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHD 495
+D F SLFNME+K+M VPYICSKFL+ D G FS PDPIREFQRLGKKKI + D
Sbjct: 540 SDYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDD 598
Query: 494 ALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFC 315
ALFEQY GF+DRM ++R+ + I QLK++F++KY + + I+D++G C++Y+DNFK+F
Sbjct: 599 ALFEQYVGFKDRMSHMRNFSEYEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFK 658
Query: 314 ELY-NTHAVEVRALVTLVDKGSLRLP 240
L+ T A V AL V RLP
Sbjct: 659 TLFTKTCAPLVAALNKRVKDKPFRLP 684
>gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus]
Length = 687
Score = 634 bits (1634), Expect = 0.0
Identities = 333/685 (48%), Positives = 454/685 (66%), Gaps = 6/685 (0%)
Frame = -1
Query: 2276 RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLA---DLEPDLEV 2106
++ LG + +D+ W++ ++ + Q + S D LV L+N +L D E EV
Sbjct: 21 KFKALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDYDDEVPYEV 80
Query: 2105 CHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 1929
E+ D + T++ V D + S+T VL +
Sbjct: 81 PCWTPDTEATLIDDVSEWLMGKTSVRDAATVCSDYCAVSETPVEVLSVE----------- 129
Query: 1928 XXXXXTLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 1749
L +D E D ++ + S+ +FT+V+EE +EE P ++N P+
Sbjct: 130 ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEELVEEDPLISLNDGNVCPIR 180
Query: 1748 QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 1572
+ L+ P+ + GR DRV+LE LQ ++ LP+HA FDDT+HQ FVE + +DFD
Sbjct: 181 TLEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDFD 240
Query: 1571 RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 1392
IRL+Q +D D +YQP L +G +RRIG+QKEAL+AIRKRNADVPELA SV+++
Sbjct: 241 NIRLRQSEVFCDRDLDRYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300
Query: 1391 VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1212
+++ A F+ ++V ++ P+V VM +M+AY KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301 LSELVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360
Query: 1211 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1032
KP VA M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361 KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420
Query: 1031 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 852
+ +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP HL NWWC+ H +S++SDP A
Sbjct: 421 DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTHLANWWCDFHYKSFISDPRA 480
Query: 851 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 672
V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D QFE MLF+GDDSLA+S++PI G +
Sbjct: 481 KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540
Query: 671 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 492
D F SLFNME+K+M VPYICSKFL+ D G FS PDPIREFQRLGKKKI + DA
Sbjct: 541 DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599
Query: 491 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 312
LFEQY GF+DRM ++R+ + I QLK++F++KY + + I+D++G C++Y+DNFK+F
Sbjct: 600 LFEQYVGFKDRMSHMRNFSEYEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659
Query: 311 LY-NTHAVEVRALVTLVDKGSLRLP 240
L+ T+A V AL V RLP
Sbjct: 660 LFTKTNAPLVAALNKRVKDKPFRLP 684
>emb|CAA41362.1| 2a protein [Brome mosaic virus]
Length = 822
Score = 476 bits (1226), Expect = e-153
Identities = 275/571 (48%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
Frame = -1
Query: 1904 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1755
+D SD L S EVR+ E + G + + EEF I + P
Sbjct: 137 EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196
Query: 1754 VMQI------TECDLELPIPILTGRS--DRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1599
+ T C + P I TG +RVSL + + T +ILPTHA FDD++HQA VE
Sbjct: 197 IEHRVSRVIDTHCHPDNP-DISTGPIYVERVSLARTEATSHSILPTHAYFDDSYHQALVE 255
Query: 1598 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 1419
NGD S+DFDRIRLKQ DWYKDPD ++QP + G RR+G+QKE L A++KRNADVPE
Sbjct: 256 NGDYSMDFDRIRLKQSDVDWYKDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315
Query: 1418 LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1263
+ ++N+ E AK A F F+ NV+ + VMT+ Y KW +D + V
Sbjct: 316 MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374
Query: 1262 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1083
ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+ +
Sbjct: 375 AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434
Query: 1082 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 906
L SR +P G IS+LE+K N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435 LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494
Query: 905 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 726
NWW + H SY+SDP+A V ++QRRTGDAFTYFGNTLVTMA A D S +C +
Sbjct: 495 TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554
Query: 725 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 546
FSGDDSL +S DTD+F SLFNME KVM VPY+CSKFL+E GN S+PDP+R
Sbjct: 555 FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPMR 614
Query: 545 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 366
E QRL K+KI + L + F DRMK++ LD+ MI L + +KY K K I
Sbjct: 615 EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672
Query: 365 D----FLGGCIYYADNFKHFCELYNTHAVEV 285
+ L Y++NF F + Y T + V
Sbjct: 673 EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703
>gb|ABF83486.1| 2a protein [Brome mosaic virus]
Length = 822
Score = 476 bits (1224), Expect = e-153
Identities = 274/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
Frame = -1
Query: 1904 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1755
+D SD L S EVR+ E + G + + EEF I + P
Sbjct: 137 EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196
Query: 1754 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1599
+ T C + P I TG +RVSL + + T +ILPTHA FDD++HQA VE
Sbjct: 197 IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255
Query: 1598 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 1419
NGD S+DFDRIRLKQ DWY+DPD ++QP + G RR+G+QKE L A++KRNADVPE
Sbjct: 256 NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315
Query: 1418 LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1263
+ ++N+ E AK A F F+ NV+ + VMT+ Y KW +D + V
Sbjct: 316 MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374
Query: 1262 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1083
ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+ +
Sbjct: 375 AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434
Query: 1082 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 906
L SR +P G IS+LE+K N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435 LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494
Query: 905 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 726
NWW + H SY+SDP+A V ++QRRTGDAFTYFGNTLVTMA A D S +C +
Sbjct: 495 TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554
Query: 725 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 546
FSGDDSL +S DTD+F SLFNME KVM VPY+CSKFL+E GN S+PDP+R
Sbjct: 555 FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNWVSIPDPMR 614
Query: 545 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 366
E QRL K+KI + L + F DRMK++ LD+ MI L + +KY K K I
Sbjct: 615 EIQRLAKRKI--LREEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672
Query: 365 D----FLGGCIYYADNFKHFCELYNTHAVEV 285
+ L Y++NF F + Y T + V
Sbjct: 673 EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703
>dbj|BAJ41521.1| 2a protein [Brome mosaic virus]
Length = 822
Score = 475 bits (1223), Expect = e-153
Identities = 274/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
Frame = -1
Query: 1904 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1755
+D SD L S EVR+ E + G + + EEF I + P
Sbjct: 137 EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196
Query: 1754 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1599
+ T C + P I TG +RVSL + + T +ILPTHA FDD++HQA VE
Sbjct: 197 IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255
Query: 1598 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 1419
NGD S+DFDRIRLKQ DWY+DPD ++QP + G RR+G+QKE L A++KRNADVPE
Sbjct: 256 NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315
Query: 1418 LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1263
+ ++N+ E AK A F F+ NV+ + VMT+ Y KW +D + V
Sbjct: 316 MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374
Query: 1262 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1083
ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+ +
Sbjct: 375 AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434
Query: 1082 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 906
L SR +P G IS+LE+K N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435 LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494
Query: 905 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 726
NWW + H SY+SDP+A V ++QRRTGDAFTYFGNTLVTMA A D S +C +
Sbjct: 495 TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554
Query: 725 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 546
FSGDDSL +S DTD+F SLFNME KVM VPY+CSKFL+E GN S+PDP+R
Sbjct: 555 FSGDDSLIISKVRPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPMR 614
Query: 545 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 366
E QRL K+KI + L + F DRMK++ LD+ MI L + +KY K K I
Sbjct: 615 EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672
Query: 365 D----FLGGCIYYADNFKHFCELYNTHAVEV 285
+ L Y++NF F + Y T + V
Sbjct: 673 EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703
>gb|ADW09018.1| polymerase 2a [Brome mosaic virus]
Length = 822
Score = 474 bits (1219), Expect = e-152
Identities = 273/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
Frame = -1
Query: 1904 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1755
+D SD L S EVR+ E + G + + EEF I + P
Sbjct: 137 EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196
Query: 1754 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1599
+ + T C + P I TG +RVSL + + T +ILPTHA FDD++HQA VE
Sbjct: 197 IERRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255
Query: 1598 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 1419
NGD S+DFDRIRLKQ DWYKDPD ++QP + G RR+G+QKE L A++KRNADVPE
Sbjct: 256 NGDYSMDFDRIRLKQSDVDWYKDPDRYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315
Query: 1418 LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1263
+ ++N+ + AK A F F+ NV+ + VMT+ Y KW +D + V
Sbjct: 316 MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374
Query: 1262 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1083
ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+ +
Sbjct: 375 AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434
Query: 1082 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 906
L SR +P G IS+LE+K N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435 LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494
Query: 905 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 726
NWW + H SY+SDP+A V ++QRRTGDAFTYFGNTLVTMA A D S +C +
Sbjct: 495 TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554
Query: 725 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 546
FSGDDSL +S DTD+F SLFNME KVM VPY+CSKFL+E GN S+PDP+R
Sbjct: 555 FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPLR 614
Query: 545 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 366
E QRL ++KI + L + F DRMK++ LD+ MI L + +KY K K I
Sbjct: 615 EIQRLARRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672
Query: 365 D----FLGGCIYYADNFKHFCELYNTHAVEV 285
+ L Y++NF F + Y T + V
Sbjct: 673 EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703
>ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic virus]
gi|137271|sp|P03594.1|RDRP_BMV RecName: Full=RNA-directed
RNA polymerase 2a; Short=protein 2a
gi|58731|emb|CAA25834.1| unnamed protein product [Brome
mosaic virus]
Length = 822
Score = 473 bits (1218), Expect = e-152
Identities = 274/571 (47%), Positives = 347/571 (60%), Gaps = 31/571 (5%)
Frame = -1
Query: 1904 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1755
+D SD L S EVR+ E + G + + EEF I + P
Sbjct: 137 EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196
Query: 1754 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1599
+ T C + P I TG +RVSL + + T +ILPTHA FDD++HQA VE
Sbjct: 197 IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255
Query: 1598 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 1419
NGD S+DFDRIRLKQ DWY+DPD ++QP + G RR+G+QKE L A++KRNADVPE
Sbjct: 256 NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315
Query: 1418 LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1263
+ ++N+ + AK A F F+ NV+ + VMT+ Y KW +D + V
Sbjct: 316 MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374
Query: 1262 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1083
ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+ +
Sbjct: 375 AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434
Query: 1082 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 906
L SR +P G IS+LE+K N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435 LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494
Query: 905 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 726
NWW + H SY+SDP+A V ++QRRTGDAFTYFGNTLVTMA A D S +C +
Sbjct: 495 TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554
Query: 725 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 546
FSGDDSL +S DTD+F SLFNME KVM VPY+CSKFL+E GN SVPDP+R
Sbjct: 555 FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSVPDPLR 614
Query: 545 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 366
E QRL K+KI + L + F DRMK++ LD+ MI L + +KY K K I
Sbjct: 615 EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITTLCHFVYLKYGKEKPWIF 672
Query: 365 D----FLGGCIYYADNFKHFCELYNTHAVEV 285
+ L Y++NF F + Y T + V
Sbjct: 673 EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703
>ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus]
gi|137272|sp|P20179.1|RDRP_CCMV RecName:
Full=RNA-directed RNA polymerase 2a; Short=protein 2a
gi|331606|gb|AAA46371.1| 2a protein [Cowpea chlorotic
mottle virus]
Length = 808
Score = 468 bits (1203), Expect = e-150
Identities = 254/507 (50%), Positives = 330/507 (65%), Gaps = 11/507 (2%)
Frame = -1
Query: 1772 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1593
V CE + +E D P + DR+SL+ L+ +LPTHA FDDT++QA E G
Sbjct: 213 VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268
Query: 1592 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 1413
D ++D ++ ++Q DWY+DP+ +Y+P L G RRIG+QK L A++KRNADVPELA
Sbjct: 269 DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328
Query: 1412 GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1254
SV+I VA A+ F +A++ + + + VM+R Y KW D D + VL E
Sbjct: 329 DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388
Query: 1253 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1074
NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389 INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448
Query: 1073 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 897
R +P G IS+LE+K NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449 RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508
Query: 896 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 717
WC+ H S +SDP+AGV ++QRRTGDAFTYFGNTLVTMA A C D + +C +FSG
Sbjct: 509 WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568
Query: 716 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 537
DDSL + + D ++F SLFNME KVM +PY+CSKFL+E N SVPDP+RE Q
Sbjct: 569 DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628
Query: 536 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 360
RL K+KI K + L ++ F DRMK+L LD+ MI+ L + +KY K D +D
Sbjct: 629 RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685
Query: 359 --LGGCIYYADNFKHFCELYNTHAVEV 285
+ YY++NF FCE Y T V +
Sbjct: 686 VAIAAFGYYSENFLRFCECYATEGVNI 712
>gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus]
Length = 808
Score = 467 bits (1202), Expect = e-150
Identities = 254/507 (50%), Positives = 329/507 (64%), Gaps = 11/507 (2%)
Frame = -1
Query: 1772 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1593
V CE + +E D P + DR+SL+ L+ +LPTHA FDDT++QA E G
Sbjct: 213 VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268
Query: 1592 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 1413
D ++D ++ ++Q DWY+DP+ +Y+P L G RRIG+QK L A++KRNADVPELA
Sbjct: 269 DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328
Query: 1412 GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1254
SV+I VA A+ F +A++ + + + VM+R Y KW D D + VL E
Sbjct: 329 DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388
Query: 1253 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1074
NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389 INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448
Query: 1073 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 897
R +P G IS+LE+K NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449 RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508
Query: 896 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 717
WC+ H S +SDP+AGV ++QRRTGDAFTYFGNTLVTMA A C D +C +FSG
Sbjct: 509 WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568
Query: 716 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 537
DDSL + + D ++F SLFNME KVM +PY+CSKFL+E N SVPDP+RE Q
Sbjct: 569 DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628
Query: 536 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 360
RL K+KI K + L ++ F DRMK+L LD+ MI+ L + +KY K D +D
Sbjct: 629 RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685
Query: 359 --LGGCIYYADNFKHFCELYNTHAVEV 285
+ YY++NF FCE Y T V +
Sbjct: 686 VAIAAFGYYSENFLRFCECYATEGVNI 712
>gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus]
Length = 808
Score = 467 bits (1202), Expect = e-150
Identities = 254/507 (50%), Positives = 329/507 (64%), Gaps = 11/507 (2%)
Frame = -1
Query: 1772 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1593
V CE + +E D P + DR+SL+ L+ +LPTHA FDDT++QA E G
Sbjct: 213 VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268
Query: 1592 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 1413
D ++D ++ ++Q DWY+DP+ +Y+P L G RRIG+QK L A++KRNADVPELA
Sbjct: 269 DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328
Query: 1412 GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1254
SV+I VA A+ F +A++ + + + VM+R Y KW D D + VL E
Sbjct: 329 DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388
Query: 1253 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1074
NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389 INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448
Query: 1073 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 897
R +P G IS+LE+K NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449 RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508
Query: 896 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 717
WC+ H S +SDP+AGV ++QRRTGDAFTYFGNTLVTMA A C D +C +FSG
Sbjct: 509 WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568
Query: 716 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 537
DDSL + + D ++F SLFNME KVM +PY+CSKFL+E N SVPDP+RE Q
Sbjct: 569 DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628
Query: 536 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 360
RL K+KI K + L ++ F DRMK+L LD+ MI+ L + +KY K D +D
Sbjct: 629 RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685
Query: 359 --LGGCIYYADNFKHFCELYNTHAVEV 285
+ YY++NF FCE Y T V +
Sbjct: 686 VAIAAFGYYSENFLRFCECYATEGVNI 712
>gb|AHA10985.1| 2a protein [Tomato aspermy virus]
Length = 828
Score = 467 bits (1201), Expect = e-149
Identities = 244/477 (51%), Positives = 318/477 (66%), Gaps = 7/477 (1%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P LT +DRV+++ LQ D+ LPTH +DDT+HQ F+EN D S+D DR+RLKQ
Sbjct: 274 PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333
Query: 1535 KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1356
+G +P L +G +RIG+ +E L AI+KRNADVPEL GSVN+ ++ A+ FM +
Sbjct: 334 VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393
Query: 1355 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1194
F+ + + + +++ AYMSKW + D L L NLQ Y+HM+K+DVKP V D
Sbjct: 394 FMNGDKLCSSNFINIVSDFHAYMSKWQSILSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453
Query: 1193 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1017
+N++R +PATITFH K + S FSP FTALF FQ+ L RV +P G IS+LE+K +
Sbjct: 454 TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513
Query: 1016 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 837
NK+ +EIDLSKFDKSQGELHL Q IL RLG P H+ WWC+ H SY+ D AGV+
Sbjct: 514 NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573
Query: 836 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 657
++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL S GD LF S
Sbjct: 574 ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633
Query: 656 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 477
LFNME+KVM VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + + +L +
Sbjct: 634 LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693
Query: 476 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
F DR+K+L H++ + QL ++++MKY K D I LG Y NF + ELY
Sbjct: 694 MSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKELY 750
>ref|NP_620761.1| 2a protein [Tomato aspermy virus] gi|137276|sp|P29035.1|RDRP_TAV
RecName: Full=RNA-directed RNA polymerase 2a;
Short=protein 2a gi|222668|dbj|BAA01514.1| 2a protein
[Tomato aspermy virus] gi|17978218|emb|CAC86464.1| 2a
protein [Tomato aspermy virus]
Length = 828
Score = 467 bits (1201), Expect = e-149
Identities = 244/477 (51%), Positives = 318/477 (66%), Gaps = 7/477 (1%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P LT +DRV+++ LQ D+ LPTH +DDT+HQ F+EN D S+D DR+RLKQ
Sbjct: 274 PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333
Query: 1535 KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1356
+G +P L +G +RIG+ +E L AI+KRNADVPEL GSVN+ ++ A+ FM +
Sbjct: 334 VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393
Query: 1355 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1194
F+ + + + +++ AYMSKW + D L L NLQ Y+HM+K+DVKP V D
Sbjct: 394 FMNGDKLCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453
Query: 1193 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1017
+N++R +PATITFH K + S FSP FTALF FQ+ L RV +P G IS+LE+K +
Sbjct: 454 TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513
Query: 1016 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 837
NK+ +EIDLSKFDKSQGELHL Q IL RLG P H+ WWC+ H SY+ D AGV+
Sbjct: 514 NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573
Query: 836 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 657
++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL S GD LF S
Sbjct: 574 ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633
Query: 656 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 477
LFNME+KVM VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + + +L +
Sbjct: 634 LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693
Query: 476 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
F DR+K+L H++ + QL ++++MKY K D I LG Y NF + ELY
Sbjct: 694 MSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKELY 750
>gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus]
Length = 808
Score = 461 bits (1187), Expect = e-147
Identities = 252/507 (49%), Positives = 328/507 (64%), Gaps = 11/507 (2%)
Frame = -1
Query: 1772 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1593
V CE + +E D P + DR+SL+ L+ +LPTHA FDDT++QA E G
Sbjct: 213 VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268
Query: 1592 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 1413
D ++D ++ ++Q DWY+DP+ +Y+P L G RRIG+QK L A++KRNADVPELA
Sbjct: 269 DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328
Query: 1412 GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1254
SV+I VA A+ F +A++ + + + VM+R Y KW D D + VL E
Sbjct: 329 DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388
Query: 1253 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1074
NLQRYQ MIK+D+KP V+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389 INLQRYQDMIKSDIKPGVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448
Query: 1073 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 897
R +P G IS+LE+K NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449 RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508
Query: 896 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 717
WC+ H S +SDP+AGV ++QRRTGDAFTYFGNTLVTMA A C D + +C +FSG
Sbjct: 509 WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568
Query: 716 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 537
DDSL + + D ++F SLFNME KVM +PY+CSKFL+E N SVPDP+RE Q
Sbjct: 569 DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628
Query: 536 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 360
RL K+KI K + L ++ F DRMK+L LD+ MI+ L + +KY K D +D
Sbjct: 629 RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685
Query: 359 --LGGCIYYADNFKHFCELYNTHAVEV 285
+ YY++NF FCE Y T V +
Sbjct: 686 VAIAAFGYYSENFLRFCECYATEGVNI 712
>gb|ADR82074.1| 2a protein [Tomato aspermy virus]
Length = 828
Score = 461 bits (1187), Expect = e-147
Identities = 242/477 (50%), Positives = 316/477 (66%), Gaps = 7/477 (1%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P LT +DRV+++ LQ D+ L TH R+DDT+HQ F+EN D S+D DR+RLKQ
Sbjct: 274 PELTRPTDRVTVDLLQAVCDSTLLTHVRYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333
Query: 1535 KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1356
+G +P L +G +RIG+ +E L AI+KRNADVPEL GSVN+ ++ A+ FM +
Sbjct: 334 VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393
Query: 1355 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1194
F+ + + + +++ AYMSKW + D L L NLQ Y+HM+K+DVKP V D
Sbjct: 394 FMNGDKLCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453
Query: 1193 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1017
+N++R +PATITFH K + S FSP FTALF FQ+ L RV +P G IS+LE+K +
Sbjct: 454 TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513
Query: 1016 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 837
NK+ +EIDLSKFDKSQGELHL Q IL RLG P H+ WWC+ H SY+ D AGV+
Sbjct: 514 NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573
Query: 836 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 657
++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL S GD LF S
Sbjct: 574 ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633
Query: 656 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 477
LFNME+KVM VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + + +L +
Sbjct: 634 LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693
Query: 476 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
F DR+K+L H++ + QL ++++ KY K D I LG Y NF + LY
Sbjct: 694 MSFVDRLKFLNHMNQTSMTQLSLFYETKYRKSGDDILLVLGAFNKYTANFNAYKGLY 750
>ref|YP_002640501.1| 2a protein [Gayfeather mild mottle virus]
gi|224492620|emb|CAT02557.1| 2a protein [Gayfeather mild
mottle virus]
Length = 777
Score = 459 bits (1182), Expect = e-147
Identities = 244/478 (51%), Positives = 310/478 (64%), Gaps = 8/478 (1%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P L +DRV ++ +Q D++LPTH +DDT+HQ FVE+ D S+D DRIRLKQ
Sbjct: 271 PSLARPTDRVDVDVVQAVCDSMLPTHVNYDDTYHQVFVEDSDYSVDIDRIRLKQSDLLPK 330
Query: 1535 KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1356
DG P L +G +R+G+QKE AI+KRNADVPEL SVN+ +++ A+ F+ +
Sbjct: 331 VSDDGHMHPVLNTGSGHKRVGTQKEVHTAIKKRNADVPELGDSVNLTRLSEAVAERFISS 390
Query: 1355 FVVNVNPLVQ-----VMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVA 1197
++ NVN LV V+ AYM KW + D L L NLQ Y+HM+K+DVKP V
Sbjct: 391 YM-NVNALVSSNFINVVGNFHAYMQKWHSSLSYDDLPDLNAENLQFYEHMVKSDVKPSVT 449
Query: 1196 DGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGF 1020
D +N++R VPATITFH K + S FSP FTALF+ FQ+ L S+V +P G IS+LE++ +
Sbjct: 450 DTLNVDRPVPATITFHKKQITSQFSPLFTALFERFQRCLRSKVVLPVGKISSLELEDFSV 509
Query: 1019 KNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAF 840
K+ +EIDLSKFDKSQGELHL Q IL RLG PAH+ WWC+ H +SY+ D AGV
Sbjct: 510 IGKHCLEIDLSKFDKSQGELHLMIQEQILNRLGCPAHVSKWWCDFHRQSYIKDKRAGVGM 569
Query: 839 QCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFA 660
++QRRTGDAFTYFGNTLVTMA F C+D QF+ MLFSGDDSLA S+ GD F
Sbjct: 570 ALSFQRRTGDAFTYFGNTLVTMALFCWCYDTEQFDRMLFSGDDSLAFSSIAPVGDPSKFT 629
Query: 659 SLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQ 480
+LFNME+KVM VPYICSKFL+ D FG +FSVPDP+RE QRLG KKI L
Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLTDEFGQTFSVPDPLREIQRLGSKKIPYSDDDSFLHAH 689
Query: 479 YQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
+ F DR+K+L + IDQL ++++MKY K LG Y NF + ELY
Sbjct: 690 FMSFVDRLKFLERMSQFTIDQLTLFYEMKYKKSGADASLVLGAFKKYTTNFNAYKELY 747
>emb|CAJ65581.1| RNA-dependent RNA polymerase [Cucumber mosaic virus (strain Ri-8)]
Length = 857
Score = 460 bits (1184), Expect = e-146
Identities = 244/479 (50%), Positives = 312/479 (65%), Gaps = 9/479 (1%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P L +DRV + +Q D+ LPTH+ +DD+FHQ FVE+ D S+D D +RL+Q +
Sbjct: 269 PDLNRATDRVDINLVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQ-SDLIA 327
Query: 1535 KDPD-GFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMK 1359
K PD G P L +G +R+G+ KE L AI+KRNADVPEL SVN+ ++K A+ F
Sbjct: 328 KIPDSGHMIPVLNTGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFI 387
Query: 1358 AFV----VNVNPLVQVMTRMQAYMSKWADR---VDPLFVLGETNLQRYQHMIKTDVKPVV 1200
+++ + + LV V++ YM KW D L L NLQ Y HMIK+DVKPVV
Sbjct: 388 SYINGNSLASSNLVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVV 447
Query: 1199 ADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YG 1023
+D +N++R VPATIT+H K + S FSP FTALF+ FQ+ L R+ +P G IS+LEM +
Sbjct: 448 SDTLNIDRPVPATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFD 507
Query: 1022 FKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVA 843
KNKY +EIDLSKFDKSQGE HL Q IL LG PA + WWC+ H SY+ D AGV
Sbjct: 508 VKNKYCLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVG 567
Query: 842 FQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLF 663
++QRRTGDAFTYFGNT+VTMAEFA C+D QFE +LFSGDDSL S P GD F
Sbjct: 568 MPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSQLPPVGDPSKF 627
Query: 662 ASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFE 483
+LFNME+KVM VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + + LF
Sbjct: 628 TTLFNMEAKVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFA 687
Query: 482 QYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
+ F DR+K+L + IDQL ++F++KY K + LG Y NF+ + ELY
Sbjct: 688 HFMSFVDRLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELY 746
>emb|CAI30263.2| replicase protein [Cucumber mosaic virus]
Length = 772
Score = 457 bits (1177), Expect = e-146
Identities = 245/480 (51%), Positives = 313/480 (65%), Gaps = 10/480 (2%)
Frame = -1
Query: 1715 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 1536
P L +DRV + +Q D+ LPTH+ +DD+FHQ FVE+ D S+D D +RL+Q +
Sbjct: 269 PDLNRATDRVDINLVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQ-SDLIA 327
Query: 1535 KDPD-GFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMK 1359
K PD G P L +G +R+G+ KE L AI+KRNADVPEL SVN+ ++K A+ F
Sbjct: 328 KIPDSGHMIPVLNTGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFI 387
Query: 1358 AFVVNVNPL-----VQVMTRMQAYMSKWADR---VDPLFVLGETNLQRYQHMIKTDVKPV 1203
+++ N N L V V++ YM KW D L L NLQ Y HMIK+DVKPV
Sbjct: 388 SYI-NGNSLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPV 446
Query: 1202 VADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-Y 1026
V+D +N++R VPATIT+H K + S FSP FTALF+ FQ+ L R+ +P G IS+LEM +
Sbjct: 447 VSDTLNIDRPVPATITYHKKSITSQFSPLFTALFERFQRCLRERIFLPVGKISSLEMAGF 506
Query: 1025 GFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGV 846
KNK+ +EIDLSKFDKSQGE HL Q IL LG PA + WWC+ H SY+ D AGV
Sbjct: 507 DVKNKHCLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566
Query: 845 AFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDL 666
++QRRTGDAFTYFGNT+VTMAEFA C+D QFE +LFSGDDSL S P GD+
Sbjct: 567 GMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDSSK 626
Query: 665 FASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALF 486
F +LFNME+KVM VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + + LF
Sbjct: 627 FTTLFNMEAKVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLF 686
Query: 485 EQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 306
+ F DR+K+L + IDQL ++F++KY K + LG Y NF+ + ELY
Sbjct: 687 AHFMSFVDRLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELY 746