BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00011881
         (3317 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...  1310   0.0  
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...  1305   0.0  
gb|AAK29467.1| polyprotein-like [Solanum chilense]                   1192   0.0  
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...  1154   0.0  
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]          1149   0.0  
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...  1118   0.0  
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo...  1118   0.0  
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]        1108   0.0  
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]  1045   0.0  
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]     1033   0.0  
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]  1005   0.0  
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]  1002   0.0  
emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera]   991   0.0  
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo...   988   0.0  
emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera]   973   0.0  
emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera]   948   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  935   0.0  
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   935   0.0  
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   933   0.0  
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   933   0.0  

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 646/1046 (61%), Positives = 785/1046 (75%), Gaps = 16/1046 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H TP +D F  Y AGDFG VKM                KTNVG T+ LKDVRHVPDLR
Sbjct: 301  SHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLR 360

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            +NL+SGIALD+ GY+++F    W+L++G++V+A+G   GTLY+T+ +IC   LN A+ E 
Sbjct: 361  MNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEI 420

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
            S +LWH+R+GHMSEKGL  L KK LI+  K   + PC++CLFGKQ               
Sbjct: 421  SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 541  XXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 720
               V+SDVCGP+E+ES+GGNKYF+TFIDDASRKLWVY LKTKDQVF+ F+ FH +VERET
Sbjct: 481  LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 721  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 900
            G KLK LRSDNGGEYTS+ F+ YC ++GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML
Sbjct: 541  GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 901  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1080
             MAKLPK FWGEAV+ ACYLINRSPSVPL FE+PE++W+ K+ SYSHL+VFGC A+AHV 
Sbjct: 601  RMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVP 660

Query: 1081 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHES--KTMEDIEK--- 1245
            KE R KLD ++ PCIFIGYGDEEFGYRLWDP +KKVIRSRDVVF ES  +T  D+ +   
Sbjct: 661  KEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVK 720

Query: 1246 ----------PTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXX 1395
                      P+ S         +D   E   + G+V+ +                    
Sbjct: 721  NGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEH------- 773

Query: 1396 XXLPNVPIPSESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVS 1575
                  P   E Q+        P V            Y  ++Y+L+++D EPES +E +S
Sbjct: 774  ------PTQGEEQHQPLRRSERPRVESRR--------YPSTEYVLISDDREPESLKEVLS 819

Query: 1576 HKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLV 1755
            H +K + ++AMQ+EMESLQKN TY++VELPKGK+ L+ KWVFKLKKDG  K+V++KARLV
Sbjct: 820  HPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLV 879

Query: 1756 VKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYME 1935
            VKGF+QKKGIDFDEIFSPVVKMTSIR IL L AS++LE+EQ+DVKTAFLHGDL+EEIYME
Sbjct: 880  VKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYME 939

Query: 1936 QPEGFEISGD-NLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFAD 2112
            QPEGFE++G  ++VCKL KSLYGLKQAPRQWY KFDS M SQ Y KT +D CVY ++F++
Sbjct: 940  QPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSE 999

Query: 2113 GNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLW 2292
             NF             GKD   I++LK +LSKSFDMKDLGPAQQILGM+IVR+R +R+LW
Sbjct: 1000 NNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLW 1059

Query: 2293 LSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLM 2472
            LSQEKYIERVLERFNM NAKPVS PLA H KLSK  CP++ EE G M+ VPYSSAVGSLM
Sbjct: 1060 LSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLM 1119

Query: 2473 YAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYT 2652
            YAMVCTRPDIAHAVG VSRFL NPGKEHWEAVKWILRYL+GT+  CLC+GG+DP+L+GYT
Sbjct: 1120 YAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYT 1179

Query: 2653 DADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKR 2832
            DADMAGD+D+RKS++G+L+TF+GGA+SWQS+LQKCVALSTT          GKEM+WLKR
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKR 1239

Query: 2833 YLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHT 3012
            +LQELG+ QK+Y V+CDSQSA+DLSKNSMYH+RTKHID+RYHWIRE ++ + LK++KI T
Sbjct: 1240 FLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIST 1299

Query: 3013 KENPSDMLTKVVTREKLELCRDIAGM 3090
             ENP+DMLTKVV R K ELC+++ GM
Sbjct: 1300 NENPADMLTKVVPRNKFELCKELVGM 1325


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score = 1305 bits (3377), Expect = 0.0
 Identities = 631/1038 (60%), Positives = 775/1038 (74%), Gaps = 6/1038 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            SYH  P ++YFTTY+ GDFG V M                +T VG T+ LKDVRH+PD+R
Sbjct: 294  SYHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQTGVGCTLILKDVRHIPDIR 353

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            LNL+S   LDK+GY++    G WKL++G++VVA+G +C TLYKT+VK+C   LN  E +A
Sbjct: 354  LNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKTYVKVCKGQLNAVENDA 413

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
            S NLWH+RL H+SEKGL  L K+ LI   K   L+PC++C+FGK                
Sbjct: 414  SPNLWHRRLAHISEKGLQLLAKQSLIPQAKGDFLNPCDYCVFGKHHRVSFKKSSNRKKNK 473

Query: 541  XXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 720
               VHSDVCGP+EVESLGGNKYF+TFIDDASRK WVY L+ K QVF+ F+ FH MVERET
Sbjct: 474  LELVHSDVCGPMEVESLGGNKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFHAMVERET 533

Query: 721  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 900
            G +LKC+R+DNGGEY SK F  YC  YGIRHEKTVP TPQHNG+AERMNRTI+E+VR ML
Sbjct: 534  GKQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIAERMNRTIVEKVRCML 593

Query: 901  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1080
             MAKLPKPFWGEAV+ A YLINR PSVPL F++PE++W+GK+ SYSHL+VFGC A+ HV 
Sbjct: 594  RMAKLPKPFWGEAVQTAVYLINRLPSVPLGFDIPERVWAGKEVSYSHLKVFGCKAFMHVP 653

Query: 1081 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQ 1260
            KE R KLD +  PC+F+GYG+EEFGY+LWDP+ K+++RSRDV+FHE +T+ED++    ++
Sbjct: 654  KEQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIFHEHETIEDLKGGEAAK 713

Query: 1261 KSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPSESQND 1440
                G   +   P     DG    E                         V +P    N+
Sbjct: 714  PMEDGVNPTSHVPSECATDGRQTQE------PEHETEEPVFGDEESVDEEVVVPDTEANE 767

Query: 1441 GGSP-----QIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQA 1605
             G P     Q+ P++            Y  S+Y+L+ ++GEPESFQE  SHKDK  W++A
Sbjct: 768  QGEPSYTSGQVEPQIRRSTRERQPSTKYPSSEYILIADEGEPESFQEVQSHKDKGCWVKA 827

Query: 1606 MQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKGI 1785
            MQ+EM+SL++N+TYE+V+LPKG++ L+NKWVFKLKKDG  K+V+HKARLVVKGF QK+GI
Sbjct: 828  MQEEMDSLKRNNTYELVQLPKGRRVLKNKWVFKLKKDGD-KLVRHKARLVVKGFSQKQGI 886

Query: 1786 DFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISG- 1962
            DF+EIFSPVVKM SIRVILGLVASM+LELEQ+DVKTAFLHGDL EEIYMEQPEGFE+ G 
Sbjct: 887  DFEEIFSPVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEIYMEQPEGFEVKGK 946

Query: 1963 DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXXX 2142
            +++VCKLKKSLYGLKQAPRQWY KFDS + SQG+K+T+AD CVYI ++ +G F       
Sbjct: 947  EDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLILLLYV 1006

Query: 2143 XXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIERV 2322
                  G+D   I  LK ELSK+FDMKD+G A+ ILGM I+RDRK  +LWLSQE+YIERV
Sbjct: 1007 DDMLIVGQDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDRKAGKLWLSQERYIERV 1066

Query: 2323 LERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDI 2502
            LERFNM NAKPV  PL  HFKLSK +CP+ +E   +MS++PYSSAVGSLMYAMVCTRPDI
Sbjct: 1067 LERFNMKNAKPVITPLVGHFKLSKKSCPTIRE---KMSTIPYSSAVGSLMYAMVCTRPDI 1123

Query: 2503 AHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLDS 2682
            AHAVG VSR+LSNPGK HWEAVKWILRYL+GTSK+CL +GGA P+LEGYTDADMAGDLD 
Sbjct: 1124 AHAVGVVSRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKPILEGYTDADMAGDLDD 1183

Query: 2683 RKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQK 2862
            RKSTSG+++TF+GGA+SWQS+LQKC++LSTT          GKEMLW+K++LQELG+KQ+
Sbjct: 1184 RKSTSGYIFTFSGGAISWQSKLQKCISLSTTEAEYVAATEAGKEMLWMKKFLQELGLKQE 1243

Query: 2863 DYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLTK 3042
            +Y V+CDSQSALDLSKN+MYHSRTKHID+RYHWIR  IE+Q  +L KIHT  N +DMLTK
Sbjct: 1244 EYIVYCDSQSALDLSKNTMYHSRTKHIDVRYHWIRLAIEKQLFQLKKIHTDRNAADMLTK 1303

Query: 3043 VVTREKLELCRDIAGMLI 3096
             VTREKL  C ++ GM +
Sbjct: 1304 NVTREKLRQCIELVGMTV 1321


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 594/1034 (57%), Positives = 747/1034 (72%), Gaps = 4/1034 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            SYH TP +D F  Y AGD+G VKM                KTNVG T+ LKDVRHVPDLR
Sbjct: 302  SYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLR 361

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            +NL+SGIALD+ GY+N+F    W+L++G +V+A+G   GTLY+T+ +IC   LN A +E 
Sbjct: 362  MNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAEICQGELNAAHEEN 421

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
            S +LWH+R+GH SEKGL  L KK LI+  K   + PCN+ LFGKQ               
Sbjct: 422  SADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSSERKSNI 481

Query: 541  XXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 720
               V+SDVCGP+E+ES+GGNKYF+TFIDDASRKLWVY  + KDQVF+ F+ FH +VERET
Sbjct: 482  LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFHALVERET 541

Query: 721  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 900
            G K K LR+DNGGEYTS+ F+ YC  +GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML
Sbjct: 542  GRKRKRLRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 601

Query: 901  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1080
             MAKLPK FWGEAVR ACYLINRSPSVPL F++PE++W+ K+ SYSHL+VFGC A+AHV 
Sbjct: 602  RMAKLPKTFWGEAVRTACYLINRSPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVP 661

Query: 1081 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESK--TMEDIEKPTM 1254
            KE R KLD ++ PCIFIGYGDEEFGYRLWD  +KKVIRSRDV+F ES+  T  D+ +   
Sbjct: 662  KEQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSRDVIFRESEVGTAADLSEKAK 721

Query: 1255 SQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPSESQ 1434
             +   I   ++  +        +   +++                       +  P E Q
Sbjct: 722  KKNGIIPNLVTIPSSSNHPTSAESTIDEVVEQEEQPDEIVEQGEQLGDNTEQMEYPEEEQ 781

Query: 1435 NDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQAMQD 1614
            +          +            Y  S+Y+L+  +GEPE+ +E +SH +K +W++AM +
Sbjct: 782  SQ--------PLRRSERQRVESTKYPSSEYVLIKYEGEPENLKEVLSHPEKSQWMKAMHE 833

Query: 1615 EMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKGIDFD 1794
            EM SLQKN TY++VELPKGK+ L+ KWVFKLKKDG+GK+V++KARLVVKGF+QKKGIDFD
Sbjct: 834  EMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGKLVRYKARLVVKGFEQKKGIDFD 893

Query: 1795 EIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISGD-NL 1971
            EIFSPVVKMTSIR IL + AS++LE+EQ+DVKTAFLHGDL+EEIYMEQ EGFE+SG  ++
Sbjct: 894  EIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAFLHGDLEEEIYMEQGEGFEVSGKKHM 953

Query: 1972 VCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXXXXXX 2151
            VCKL KSLYGLKQAPRQWY KFDS M SQ Y+ T +  CVY ++F+D NF          
Sbjct: 954  VCKLNKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFIILLLYTDYM 1013

Query: 2152 XXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIERVLER 2331
               GKD   I++L+K+ SKSFDMKDLGPA+QILGM+I R+ + ++L LS EKYIERVLER
Sbjct: 1014 LIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIAREEQ-KKLGLSHEKYIERVLER 1072

Query: 2332 FNMNNAKPVSIPLANHFKLSKSACPSSKE-EIGEMSSVPYSSAVGSLMYAMVCTRPDIAH 2508
            FNM +AKP+S PL ++ KL+K   P+ K+ E G+M+ VPYSSAVGS MYAMVCTRP+I  
Sbjct: 1073 FNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYSSAVGSFMYAMVCTRPNIV- 1131

Query: 2509 AVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLDSRK 2688
            AV  VSRFL  PGKEH EAVKWILRYL+ T++   C+ G+DP+ +GYT+ DM GDLD+RK
Sbjct: 1132 AVCVVSRFLEIPGKEHLEAVKWILRYLRRTTRDYFCFEGSDPISKGYTNVDMEGDLDNRK 1191

Query: 2689 STSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQKDY 2868
            ST+ +L+TF+GG +SWQS+LQK VALSTT           KEMLWLKR+LQE G+ QK+Y
Sbjct: 1192 STTCYLFTFSGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGLHQKEY 1251

Query: 2869 KVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLTKVV 3048
             V+C+SQSA+DLSK +MYH+ TKHID+RYHWIRE ++   L++VKI T ENP+DM+TKVV
Sbjct: 1252 VVYCESQSAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVKIPTSENPADMVTKVV 1311

Query: 3049 TREKLELCRDIAGM 3090
              EK EL +++ GM
Sbjct: 1312 QNEKFELWKELVGM 1325


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 581/1033 (56%), Positives = 733/1033 (70%), Gaps = 3/1033 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+HVTPH+++F++Y+ GDFG VKM                 T  G+ + LK+VRHVPD+R
Sbjct: 296  SFHVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLMLKEVRHVPDMR 355

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            LNL+S   LD+ G  N F+   WKLSRG+M+VARG   G+LY    KIC   +N+A+ +A
Sbjct: 356  LNLISVSKLDEAGMINQFSADRWKLSRGSMIVARGKKEGSLYTMQGKICKGDMNVAQ-DA 414

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
            S+ LWH+RLGHMSEKGL  L K  L N+ K   L+ C  CL GKQ               
Sbjct: 415  SKELWHRRLGHMSEKGLEILAKDHLPNI-KGQPLESCEDCLAGKQHRVSFRRPDDARRRK 473

Query: 541  XXX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVER 714
                 VHSDVC   E  S+GG +YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER
Sbjct: 474  HILDLVHSDVCSTSE-RSIGGAQYFVTFIDDHSRKVWVYPLKTKDQVLQAFKEFHALVER 532

Query: 715  ETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRS 894
             TG KLKC+R+DNGGEY    F+ YCKT+GIRHEK  P+TPQ NGVAERMNRTI E+VRS
Sbjct: 533  ATGRKLKCIRTDNGGEYLGP-FEYYCKTHGIRHEKVPPKTPQMNGVAERMNRTIAEKVRS 591

Query: 895  MLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAH 1074
            MLS AK+PK FWGEAV  A  LIN SPS PLN E+PE++WSGK   Y HL+VFGC A+ H
Sbjct: 592  MLSHAKIPKSFWGEAVLTAADLINLSPSRPLNGEIPEEVWSGKKAYYGHLKVFGCRAFVH 651

Query: 1075 VSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTM 1254
            + K+ R KLDA+   CI++    +E G+RLWDP  KK++RSRDV+F E +T++DI+KP  
Sbjct: 652  IPKDERTKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFFEDQTIQDIKKPEK 711

Query: 1255 SQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPSESQ 1434
             ++     ++ D++P      G  + + I                            E Q
Sbjct: 712  PKQK----EVQDSSPIVINNSGGEISQRIDEPNQTEQPESEQSQTM----------QEEQ 757

Query: 1435 NDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQAMQD 1614
             +    +  PEV            Y   DY+ LT++GEP+SF EA+   DKEKWLQAM++
Sbjct: 758  METNQEEQEPEVRRSMRVRQPSKRYFSDDYVNLTDEGEPQSFIEAIEMNDKEKWLQAMEE 817

Query: 1615 EMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKGIDFD 1794
            E++SL++N TYE+VELP+G+KAL+NKWVFKLK + +    ++KAR+VVKG  QKKGIDF+
Sbjct: 818  ELQSLKENETYELVELPQGRKALKNKWVFKLKTEENNTKPRYKARIVVKGCNQKKGIDFE 877

Query: 1795 EIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISG-DNL 1971
            EIFSPVVKMTSIR ILGL A ++LE+EQ+DVKTAFLHGDL+EEIYMEQPEGF   G ++L
Sbjct: 878  EIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFAEPGKEHL 937

Query: 1972 VCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXXXXXX 2151
            VC+LKKSLYGLKQAPRQWY KFD  M    +KKT+AD+CV+++ + +G            
Sbjct: 938  VCRLKKSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVFVKNYENGESIILLLYVDDM 997

Query: 2152 XXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIERVLER 2331
               GKD TKI+ LKK LSKSF MKDLG  ++ILGM+I+RDR  R LW+SQE YI++VLER
Sbjct: 998  LIVGKDKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDRSKRMLWMSQEDYIKKVLER 1057

Query: 2332 FNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIAHA 2511
            FNM+NAK V +PL  H KLSK  CP ++E+  EMS VPYSSAVGSLMYAMVCTRPDIA+A
Sbjct: 1058 FNMHNAKSVHVPLPGHLKLSKKQCPVNEEK-EEMSKVPYSSAVGSLMYAMVCTRPDIAYA 1116

Query: 2512 VGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLDSRKS 2691
            VG VSRFLSNPGKEHW AVKWILRYLKGT+K CLC+G  + +L GY+DADMAGD+DSRKS
Sbjct: 1117 VGVVSRFLSNPGKEHWNAVKWILRYLKGTAKSCLCFGNGNLMLTGYSDADMAGDVDSRKS 1176

Query: 2692 TSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQKDYK 2871
            TSG+L TFAGGA+SWQSRLQKC+ALSTT           KE+LW+K++LQELG  Q+ Y 
Sbjct: 1177 TSGYLITFAGGAISWQSRLQKCIALSTTEAEFIAITEGCKEILWMKKFLQELGQDQESYV 1236

Query: 2872 VHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLTKVVT 3051
            ++CDSQSA+ LSKNS +HSR+KHID+RYHWIR+ +E + LK+ KIHTK+N +DM+TK + 
Sbjct: 1237 LYCDSQSAIHLSKNSTFHSRSKHIDVRYHWIRDVLESKMLKIEKIHTKDNGADMMTKSLP 1296

Query: 3052 REKLELCRDIAGM 3090
            REK+E+C+++AG+
Sbjct: 1297 REKIEVCKEVAGL 1309


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score = 1149 bits (2971), Expect = 0.0
 Identities = 574/1053 (54%), Positives = 737/1053 (69%), Gaps = 15/1053 (1%)
 Frame = +1

Query: 7    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 186
            H TP ++ F++Y  GDFG VKM                +T  G  + L+DVRHVPD+RLN
Sbjct: 301  HATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLN 360

Query: 187  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 366
            L+S   LD++GY N F  G WKL++G+++VARG     LY T   I    +N+AE +++ 
Sbjct: 361  LISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNI 420

Query: 367  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 543
             LWH+RLGHMSEK ++ L+KK  +    +  L  C  CL GKQ +               
Sbjct: 421  KLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVL 480

Query: 544  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 723
              VHSDVCGP + +SLGG +YF+TFIDD SRK WVY LKTKDQVF+ FK F  +VERETG
Sbjct: 481  DLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETG 539

Query: 724  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 903
             KLKC+R+DNGGEY  + FDAYCK +GIRH+ T P+TPQ NG+AERMNRT++ER R +LS
Sbjct: 540  KKLKCIRTDNGGEYQGQ-FDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLS 598

Query: 904  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1083
             +KLPK FWGEA+  A Y++N SP VPL ++ PEK+W G+D SY  LRVFGC AY HV K
Sbjct: 599  HSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVPK 658

Query: 1084 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1263
            + R KLD +T  C+FIGYG +  GY+ +DP EKK++RSRDVVF E +T+EDI+K   S  
Sbjct: 659  DERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKSTD 718

Query: 1264 SN-------------IGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXL 1404
             +             +G  + D  PE        +P +                      
Sbjct: 719  DSAEFELPPTVVPRQVGDDVQDNQPE-----APGLPNEDELADTEGNEDNGDDDADEEDQ 773

Query: 1405 PNVPIPSESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKD 1584
            P  PI +       S ++V +             YS  +Y+LLT+ GEP+SF+EA+  + 
Sbjct: 774  PQPPILNNPPYHTRSGRVVQQ----------STRYSPHEYVLLTDGGEPDSFEEAIDDEH 823

Query: 1585 KEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKG 1764
            KEKW++AMQDE++SL +N T+E+V+LPKGK+AL+NKWVFK+K D    + + KARLVVKG
Sbjct: 824  KEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKG 883

Query: 1765 FQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPE 1944
            F Q+KGIDFDEIFSPVVKMTSIR +LGL AS+NLE+EQMDVKTAFLHGDL+EEIYMEQP+
Sbjct: 884  FNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPD 943

Query: 1945 GFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNF 2121
            GF+  G ++ VC+L+KSLYGLKQAPRQWY KF+S M   GYKKT +D CV+ QKF+D +F
Sbjct: 944  GFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDF 1003

Query: 2122 XXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQ 2301
                         G++ ++I+ LK++LSK F MKDLGPA+QILGM+I+RDR+ ++LWLSQ
Sbjct: 1004 IILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQ 1063

Query: 2302 EKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAM 2481
            EKYIE+VL+RFNM   K VS PLANHF+LS    PS+ +E  +M  +PY+SAVGSLMYAM
Sbjct: 1064 EKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAM 1123

Query: 2482 VCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDAD 2661
            VCTRPDIAHAVG VSRFLSNPGKEHW+AVKWILRYL+GTSK+CLC+G  +PVL GYTDAD
Sbjct: 1124 VCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDAD 1183

Query: 2662 MAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQ 2841
            MAGD+DSRKSTSG+L  F+GGAVSWQS+LQKCVALSTT           KE++W+K++L 
Sbjct: 1184 MAGDVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLT 1243

Query: 2842 ELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKEN 3021
            ELG  Q  Y++ CDSQSA+ L+KN+ +HSR+KHID+RY+WIR+ +E++ L+L KIHT EN
Sbjct: 1244 ELGFSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDEN 1303

Query: 3022 PSDMLTKVVTREKLELCRDIAGMLIPDMAGGGE 3120
             SDMLTK + + K E CR+ AG++ P  +  GE
Sbjct: 1304 GSDMLTKTLPKGKFEFCREAAGIVDPPYSWKGE 1336


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 566/1050 (53%), Positives = 732/1050 (69%), Gaps = 17/1050 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+HVTPH  +F++Y++GDFG V+M                 T+ G  + LKDVRHVP +R
Sbjct: 286  SFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMR 345

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            LNL+S   LD  G  N+F +G WKL++G++V+ARG   G+LY    K+C   +NI   + 
Sbjct: 346  LNLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDI 405

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
               +WH+RLGH+SEKGL  L +K+L++  K  +LDPC HCL GKQ               
Sbjct: 406  E--VWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQRSSPPVRRK 463

Query: 541  XXX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVER 714
                 VH+DVC   E +S+GG  YF+TFIDD SRK+W++ LK+KDQV + FK FH +VER
Sbjct: 464  NILDLVHTDVCSMSE-KSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVER 522

Query: 715  ETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRS 894
            ETG K+KC+RSDNGGEY    F+ YCK +GIR EKT P+TPQ NG+AERMNRTI ERVR 
Sbjct: 523  ETGRKIKCVRSDNGGEYRGP-FETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRC 581

Query: 895  MLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAH 1074
            +LS AKLPK FWGEA+     ++N +PSVPL   +P+++W+GK  SY+HL+VFGC A+ H
Sbjct: 582  VLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVFGCRAFVH 641

Query: 1075 VSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDI---EK 1245
            + K+ R KLDA+T  CI++    +EFGYRLWDP  KKV+RSRDVVF E +T+EDI   EK
Sbjct: 642  IPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEK 701

Query: 1246 PTMSQKSNI-------GAQISDAAPE---PFVRDGDVVPEDIPXXXXXXXXXXXXXXXXX 1395
            P + + + +            D  PE   P +   +    D P                 
Sbjct: 702  PRLRKSTELTPVQHENNETHQDNDPEEDEPVLEQSNQETHDEP----------------- 744

Query: 1396 XXLPNVPIPSESQNDGGSPQI-VPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAV 1572
                       +Q D  S  +  PE             Y+  +Y++LT++GEP+S++EA+
Sbjct: 745  -----------AQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAI 793

Query: 1573 SHKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARL 1752
                KE+W +AMQ+EM+SL +N TYE+VELPKG++AL+NKWV+++K + +    ++KARL
Sbjct: 794  KDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARL 853

Query: 1753 VVKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYM 1932
            VVKGF Q+KGIDF+EIFSPVVKM+SIRVILG+ A+ +LE+EQ+DVKTAFLHGDL+EEIYM
Sbjct: 854  VVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYM 913

Query: 1933 EQPEGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFA 2109
            EQPEGF++ G +NLVC+L KSLYGLKQAPRQWY KF+S M    +KKT +D CV+I+++A
Sbjct: 914  EQPEGFKVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYA 973

Query: 2110 DGNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRL 2289
             G+F             G+D  KI+ LKK+LSKSF MKDLGPA+QILGM+I RDR  R L
Sbjct: 974  SGDFLILLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLL 1033

Query: 2290 WLSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSL 2469
            WLSQE+YIE+VLE+FNM+  KPV+ PLA HF+LS    P+S+ E+ EM  +PYSS VGSL
Sbjct: 1034 WLSQERYIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSL 1093

Query: 2470 MYAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGY 2649
            MYAM+CTRPDIA+AVG VSRFL++PG EHW AVKWILRYL+GTSK CLC+G   PVL+GY
Sbjct: 1094 MYAMICTRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGY 1153

Query: 2650 TDADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLK 2829
            TDAD+AGD+DSRKSTSG+L TFAGGAVSWQS+LQKCVALSTT           KEMLW+K
Sbjct: 1154 TDADLAGDIDSRKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMK 1213

Query: 2830 RYLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIH 3009
              L ELG++Q+ Y V CD+QSA+ L+KNS +HSRTKHID RYHWIRE +E ++L L K+H
Sbjct: 1214 NMLLELGVEQERYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVH 1273

Query: 3010 TKENPSDMLTKVVTREKLELCRDIAGMLIP 3099
            T EN SDM+TKV+  +K E C   AG+L+P
Sbjct: 1274 TDENWSDMMTKVIPTKKFEDCCQGAGLLLP 1303


>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 566/1050 (53%), Positives = 732/1050 (69%), Gaps = 17/1050 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+HVTPH  +F++Y++GDFG V+M                 T+ G  + LKDVRHVP +R
Sbjct: 286  SFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMR 345

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            LNL+S   LD  G  N+F +G WKL++G++V+ARG   G+LY    K+C   +NI   + 
Sbjct: 346  LNLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDL 405

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
               +WH+RLGH+SEKGL  L +K+L++  K  +LDPC HCL GKQ               
Sbjct: 406  E--VWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQRSSPPVRRK 463

Query: 541  XXX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVER 714
                 VH+DVC   E +S+GG  YF+TFIDD SRK+W++ LK+KDQV + FK FH +VER
Sbjct: 464  NILDLVHTDVCSMSE-KSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVER 522

Query: 715  ETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRS 894
            ETG K+KC+RSDNGGEY    F+ YCK +GIR EKT P+TPQ NG+AERMNRTI ERVR 
Sbjct: 523  ETGRKIKCVRSDNGGEYRGP-FETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRC 581

Query: 895  MLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAH 1074
            +LS AKLPK FWGEA+     ++N +PSVPL   +P+++W+GK  SY+HL+VFGC A+ H
Sbjct: 582  VLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVFGCRAFVH 641

Query: 1075 VSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDI---EK 1245
            + K+ R KLDA+T  CI++    +EFGYRLWDP  KKV+RSRDVVF E +T+EDI   EK
Sbjct: 642  IPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEK 701

Query: 1246 PTMSQKSNI-------GAQISDAAPE---PFVRDGDVVPEDIPXXXXXXXXXXXXXXXXX 1395
            P + + + +            D  PE   P +   +    D P                 
Sbjct: 702  PRLRKSTELTPVQHENNETHQDNDPEEDEPVLEQSNQETHDEP----------------- 744

Query: 1396 XXLPNVPIPSESQNDGGSPQI-VPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAV 1572
                       +Q D  S  +  PE             Y+  +Y++LT++GEP+S++EA+
Sbjct: 745  -----------AQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAI 793

Query: 1573 SHKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARL 1752
                KE+W +AMQ+EM+SL +N TYE+VELPKG++AL+NKWV+++K + +    ++KARL
Sbjct: 794  KDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARL 853

Query: 1753 VVKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYM 1932
            VVKGF Q+KGIDF+EIFSPVVKM+SIRVILG+ A+ +LE+EQ+DVKTAFLHGDL+EEIYM
Sbjct: 854  VVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYM 913

Query: 1933 EQPEGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFA 2109
            EQPEGF++ G +NLVC+L KSLYGLKQAPRQWY KF+S M    +KKT +D CV+I+++A
Sbjct: 914  EQPEGFKVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYA 973

Query: 2110 DGNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRL 2289
             G+F             G+D  KI+ LKK+LSKSF MKDLGPA+QILGM+I RDR  R L
Sbjct: 974  SGDFLILLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLL 1033

Query: 2290 WLSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSL 2469
            WLSQE+YIE+VLE+FNM+  KPV+ PLA HF+LS    P+S+ E+ EM  +PYSS VGSL
Sbjct: 1034 WLSQERYIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSL 1093

Query: 2470 MYAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGY 2649
            MYAM+CTRPDIA+AVG VSRFL++PG EHW AVKWILRYL+GTSK CLC+G   PVL+GY
Sbjct: 1094 MYAMICTRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGY 1153

Query: 2650 TDADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLK 2829
            TDAD+AGD+DSRKSTSG+L TFAGGAVSWQS+LQKCVALSTT           KEMLW+K
Sbjct: 1154 TDADLAGDIDSRKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMK 1213

Query: 2830 RYLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIH 3009
              L ELG++Q+ Y V CD+QSA+ L+KNS +HSRTKHID RYHWIRE +E ++L L K+H
Sbjct: 1214 NMLLELGVEQERYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVH 1273

Query: 3010 TKENPSDMLTKVVTREKLELCRDIAGMLIP 3099
            T EN SDM+TKV+  +K E C   AG+L+P
Sbjct: 1274 TDENWSDMMTKVIPTKKFEDCCQGAGLLLP 1303


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score = 1108 bits (2867), Expect = 0.0
 Identities = 560/1036 (54%), Positives = 708/1036 (68%), Gaps = 14/1036 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            +YHVTP K++FT+Y  GDFG ++M                +T+ G+ + LK+V+H PD+R
Sbjct: 296  AYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIR 355

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            LNL+S   LD  G+   F  G WK+++G++VVARG+    LY     +  DS+N+ EKE 
Sbjct: 356  LNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKEC 415

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
            +  LWH+RLGHMS KG+  L KK  ++  KEA LD C HCL GKQ+              
Sbjct: 416  ASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCLAGKQRRVSFMSHPPTRKSE 475

Query: 541  XXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                +HSDVCGP++V SLGG  YF+TFIDD SRKLWVY LK K  V   FK FH +VER+
Sbjct: 476  PLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQ 535

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            TG KLKC+R+DNGGEY    FD YC+ YGIRH+KT P+ PQ NG+AERMNRTIMERVR M
Sbjct: 536  TGKKLKCIRTDNGGEYCGP-FDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCM 594

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
            L  AKLP  FW EAV  A ++IN SP + L  EVP+K+W GKD SY HLRVFGC A+ HV
Sbjct: 595  LDDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHV 654

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMS 1257
             ++ R KLD++T  CIFIGYG +EFGYRL+DP EKK++RSRDVVF E++T+EDI+K    
Sbjct: 655  PRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQP 714

Query: 1258 QKSNIGAQISDAAP------------EPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXX 1401
            +  + G+ + D  P            +  V++GD VP+                      
Sbjct: 715  ESRDSGSLV-DIEPVSRRYTDDVDEVQENVQNGDPVPDYQGDTVDVDGHADDVVHQEQEV 773

Query: 1402 LPNVPIPSESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHK 1581
               VP+    ++D                      YS S Y+LLT+ GEPES++EA+   
Sbjct: 774  PSQVPVDLPRRSD--------------RERRPSTRYSPSQYVLLTDGGEPESYEEAMESD 819

Query: 1582 DKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVK 1761
             K +W +AMQ+EM SL  N T+E+V+ PK +KAL+N+WV+++K +    V + KARLVVK
Sbjct: 820  QKRQWFEAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVK 879

Query: 1762 GFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQP 1941
            GF QKKGIDFDEIFSPVVK +SIRV+LGL A +++E+EQMDVKTAFLHGDL EEIYMEQP
Sbjct: 880  GFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQP 939

Query: 1942 EGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGN 2118
            EGF++ G ++ VC+LKKSLYGLKQAPRQWY KF S M   GYKKT++D CV++ +++D +
Sbjct: 940  EGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDD 999

Query: 2119 FXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLS 2298
            F             G++A++I +LK+ELSKSF MKD+GPA+QILGM+I+RDR+N++LWLS
Sbjct: 1000 FVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLS 1059

Query: 2299 QEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYA 2478
            QEKYIE+VLERF+MN AKPVS PL  HFKL K  CPSS++E  EM  VPYSSAVGSLMYA
Sbjct: 1060 QEKYIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYA 1119

Query: 2479 MVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDA 2658
            MVCTRPDIAHAVG VSRFLSNPG+EHW+AVKWILRYL+GTS + LC+G   P+L GYTD+
Sbjct: 1120 MVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILTGYTDS 1179

Query: 2659 DMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYL 2838
            DMAGD+D+RKSTSG+L T+AGGAVSWQSRLQKCV LSTT           KEMLW+K++L
Sbjct: 1180 DMAGDIDTRKSTSGYLITYAGGAVSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFL 1239

Query: 2839 QELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKE 3018
            QELG  Q                       R+KHID RYHWIR+ +E + L+L KIHT +
Sbjct: 1240 QELGFVQ----------------------DRSKHIDTRYHWIRDILECKMLELEKIHTDD 1277

Query: 3019 NPSDMLTKVVTREKLE 3066
            N SDM+TK + R K E
Sbjct: 1278 NGSDMMTKALPRGKFE 1293


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 527/1050 (50%), Positives = 708/1050 (67%), Gaps = 19/1050 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S H TP KD+FT+Y +GDFG+V+M                +T+ G+ +TLK+V+H+PD+R
Sbjct: 278  SIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIR 337

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
            +NL+S   LD +G+ N F    WKL+RG+MV+A+G+   +LY    ++   S+N  + ++
Sbjct: 338  MNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDS 397

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXX 537
            +  LWH +LGHMSEKGL  L KK L+   K+ +L  C HCL GKQ +             
Sbjct: 398  TFELWHNKLGHMSEKGLMILAKKNLLXGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPG 457

Query: 538  XXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                V+SDV GP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER+
Sbjct: 458  MLDLVYSDVYGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQ 517

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            +G KLKC+R+DNGGEY S  FD YC+ +G RH+KT P+TPQ NG+AERMNRT++ERVR +
Sbjct: 518  SGEKLKCIRTDNGGEY-SGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCL 576

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
            LS ++LP+ FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+
Sbjct: 577  LSQSQLPRSFWGEALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHI 636

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK--PT 1251
             K+ R KLDA+T PC+FIGYG +E GY+ +D  +KK+ RS DVVF E  T++DIEK  P 
Sbjct: 637  PKDERSKLDAKTRPCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEKTNPM 696

Query: 1252 MSQKS------------NIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXX 1395
             SQ S            N+  Q+ D A +     GDV   + P                 
Sbjct: 697  ESQHSGDLIDLDPAPLTNLPTQVEDGAHDDQHDMGDV---ETPTQVEDETHDDQHDMGDV 753

Query: 1396 XXLPNVPIPS---ESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQE 1566
                 V +     E      +P  +P +            YS  DY+LLT++GEPES+ E
Sbjct: 754  ETPTQVEVDDDVHEQSPTAEAPSDIP-LRRSTRDRHPSTRYSVDDYVLLTDEGEPESYVE 812

Query: 1567 AVSHKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKA 1746
            A+  ++K KW+ AM+DEMESL +N ++E+V+LPKGK+AL+N+WV+++K++      ++KA
Sbjct: 813  AMKDENKMKWVDAMRDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKA 872

Query: 1747 RLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEI 1926
            RLVVK  Q K+  D                         LE++QMDVKTAFLHGDL +EI
Sbjct: 873  RLVVKRVQSKESFD-------------------------LEIQQMDVKTAFLHGDLDKEI 907

Query: 1927 YMEQPEGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQK 2103
            YMEQPEGF + G ++ VCKLKKSLYGLKQAPRQWY KF+S M  QGY+KT +D CV++QK
Sbjct: 908  YMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQK 967

Query: 2104 FADGNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNR 2283
            F+D +F              ++ ++I  LKK+LSKSF MKDLGP ++ILG++I RDR ++
Sbjct: 968  FSDDDFVILLLYVDDILIVCRNVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIERDRASK 1027

Query: 2284 RLWLSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVG 2463
            +L + QE+YIE+V  RFNM+  K VS PLA+HFKLS    PS+ +E  +M  VPY+SA+G
Sbjct: 1028 KLCMLQEQYIEKVFARFNMSKFKVVSSPLASHFKLSSRHSPSTDKEKEDMRRVPYASAIG 1087

Query: 2464 SLMYAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLE 2643
            SLMYAMVCTRPDIA+AVG VSRFLSNPG+ HWEAVKWI+RYL+GTSK+ L +G   P+L 
Sbjct: 1088 SLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTFGSGKPILV 1147

Query: 2644 GYTDADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLW 2823
            GYTD+DMAGD+D+RKSTSG+L TF+GGAVSWQSRLQKCVALSTT           KE+LW
Sbjct: 1148 GYTDSDMAGDVDNRKSTSGYLMTFSGGAVSWQSRLQKCVALSTTEAEYIAAVEACKELLW 1207

Query: 2824 LKRYLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVK 3003
            +K ++QELG KQ+ Y V+CD+QSA+ LSKNS YH+R+KHID+RYHW+R+ +     ++ K
Sbjct: 1208 MKCFMQELGFKQQRYVVYCDNQSAIHLSKNSTYHARSKHIDVRYHWMRDALNDNLFEIEK 1267

Query: 3004 IHTKENPSDMLTKVVTREKLELCRDIAGML 3093
            IHT  N SDMLTK + REKL +C  IAGM+
Sbjct: 1268 IHTDNNGSDMLTKTLPREKLGVCCSIAGMI 1297


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 527/997 (52%), Positives = 686/997 (68%), Gaps = 8/997 (0%)
 Frame = +1

Query: 121  KTNVGSTITLKDVRHVPDLRLNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGT 300
            +TN+G  + L+ V+H PD+R NLLS   LD  G++NHF  G WKLSRG ++VA+G     
Sbjct: 335  QTNMGMQLLLRGVKHAPDVRFNLLSVQMLDDSGFENHFGLGKWKLSRGNLIVAKGDRISK 394

Query: 301  LYKTHVKICTDSLNIAEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHC 480
            LY T   +  DS+N  + +AS  LWH+RL H+SEKGL+ L KK++++  K A L+ C+HC
Sbjct: 395  LYWTKALVAKDSVNAMDMDAS--LWHRRLSHISEKGLNCLAKKDVLSGLKNAELEKCSHC 452

Query: 481  LFGKQ-QXXXXXXXXXXXXXXXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFL 657
            + GKQ +                 VHSDVCGPL+V+S  G  YF+TFIDD SRKLWVY L
Sbjct: 453  MAGKQTRVSFKKHPPSKKSELLELVHSDVCGPLKVKSFTGTIYFVTFIDDCSRKLWVYAL 512

Query: 658  KTKDQVFEYFKLFHVMVERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTP 837
            KTKDQV   FK FHV+VER++G KLKC+R+DNGGEY    FDAYCK +GIRHEKT P+TP
Sbjct: 513  KTKDQVLAKFKEFHVLVERQSGKKLKCIRTDNGGEYCGP-FDAYCKQHGIRHEKTPPKTP 571

Query: 838  QHNGVAERMNRTIMERVRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWS 1017
            Q NG+AERMNRT++ERVR MLS AKLPK FWGEA+  A ++IN SP++ LN EVP+K+W 
Sbjct: 572  QLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPAIALNAEVPDKVWF 631

Query: 1018 GKDPSYSHLRVFGCLAYAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRS 1197
            GK+  Y HLRVFGC AY H                                   KK +RS
Sbjct: 632  GKNVKYDHLRVFGCKAYVH-----------------------------------KKAVRS 656

Query: 1198 RDVVFHESKTMEDIEKP------TMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXX 1359
            RDV F E +T+EDI+K       T ++ SN+   +SD   +      DV  + +      
Sbjct: 657  RDVKFMEDQTIEDIDKTEKITSETDNRLSNVDPVLSDEQHD------DVDDQQLGDAF-- 708

Query: 1360 XXXXXXXXXXXXXXLPNVPIPSESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTE 1539
                            +VPI  +S+ + G  Q                 Y   DY+ LT+
Sbjct: 709  ----------------DVPI-DDSEEEHGMSQDEDLGDAPEPPQVQIRRYPSDDYVTLTD 751

Query: 1540 DGEPESFQEAVSHKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDG 1719
            +GEPE + EA+  ++K+KWL AMQDEM+SL  N T+++V+LPK KKAL N+W++++K++ 
Sbjct: 752  EGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQES 811

Query: 1720 SGKVVKHKARLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAF 1899
            +    ++KARLVVKGF+Q+KGIDF+EIFSPVVKM+SIR++L L A+++LE+EQMDVKTAF
Sbjct: 812  NSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAF 871

Query: 1900 LHGDLKEEIYMEQPEGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTN 2076
            LHGDL+EEIYM+QP+GF + G ++ VC+L+KSLYGLKQAPRQWY KF+S M  QGYKKT 
Sbjct: 872  LHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTT 931

Query: 2077 ADECVYIQKFADGNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGM 2256
            +D CV+++KFA+ +F             GKD + I++LKK+LS+SF MKD+G A+QILG+
Sbjct: 932  SDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGI 991

Query: 2257 QIVRDRKNRRLWLSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMS 2436
            +I+RDR+ ++LWLSQE Y++RVL+RF M NAK VS PLA HFKLS    PS + E  +M 
Sbjct: 992  RIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQ 1051

Query: 2437 SVPYSSAVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLC 2616
             +PY+SAVGSLMYAMVCTRPDIAH VGTVSRF+SNPG+EHW AVKWILRYL+GT+ + LC
Sbjct: 1052 RIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLC 1111

Query: 2617 YGGADPVLEGYTDADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXX 2796
            +GG  P L GYTD+DM GD+DSR+STSG++  FAGGAV+WQSRLQKCVALSTT       
Sbjct: 1112 FGGDKPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAI 1171

Query: 2797 XXXGKEMLWLKRYLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETI 2976
                KE+LW+K+ LQEL   Q  Y + CDSQSA+ L KNS +HSR+KHID+RYHWIR+ +
Sbjct: 1172 TEACKELLWVKKLLQELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDAL 1231

Query: 2977 ERQQLKLVKIHTKENPSDMLTKVVTREKLELCRDIAG 3087
            E + L+L K+HT +N +DM+TK + R K E C  IAG
Sbjct: 1232 EARLLELAKVHTDDNCADMMTKSLPRSKSETCCKIAG 1268


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 522/1031 (50%), Positives = 672/1031 (65%), Gaps = 7/1031 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H TPH++    Y AGDFG V +                    GS   L+ VRH+PDLR
Sbjct: 293  SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLR 352

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
             NL+S   LD +G+   F  GTWK+++G  V+ARG   GTLY T      D++ +A+   
Sbjct: 353  RNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCP--RDTIAVADAST 410

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
              +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GKQ+              
Sbjct: 411  DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAE 470

Query: 541  XXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                VH+D+ GP  V SLGG++Y++TFIDD+SRK+WVYFLK K  VF  FK +  MVE E
Sbjct: 471  KLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETE 530

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            TG K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NGVAERMNRT+ ER RSM
Sbjct: 531  TGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 590

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
               A LPK FW +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+
Sbjct: 591  RLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHI 650

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPT-- 1251
              + R KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D    T  
Sbjct: 651  DSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRLTVTSX 710

Query: 1252 ---MSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIP 1422
               + QK +    + +       + G+   E++                     P V + 
Sbjct: 711  VTEIDQKKSEFVNLDELTESTVQKRGEEDKENV-------------NSKVDLRTPVVEVR 757

Query: 1423 SESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQ 1602
              S+N     +  P +                +YLLLT+ GEPE + EA+  ++  KW  
Sbjct: 758  RSSRNIRPPQRYSPVL----------------NYLLLTDGGEPECYNEALQDENSSKWEL 801

Query: 1603 AMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKG 1782
            AM+DEM+SL  N T+E+ ELP GKKAL NKWV+++K +  G   ++KARLVVKGFQQK+G
Sbjct: 802  AMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEG 860

Query: 1783 IDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISG 1962
            ID+ EIFSPVVKM++IR++LG+VA  NL LEQ+DVKT FLHGDL+E++YM QPEGF + G
Sbjct: 861  IDYIEIFSPVVKMSTIRLVLGMVAVENLHLEQLDVKTTFLHGDLEEDLYMIQPEGFIVQG 920

Query: 1963 -DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXX 2139
             +NLVCKL+KSLYGLKQAPRQWY KFD+ M   G+K+  AD C Y++ F D ++      
Sbjct: 921  QENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSF-DNSYIILLLY 979

Query: 2140 XXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIER 2319
                   G D  KI+ LKK+LSK F MKDLG A+QILGM+I+RD+ N  L LSQ +Y+++
Sbjct: 980  VDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKK 1039

Query: 2320 VLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPD 2499
            VL RFNMN AKPVS PL +HFKLSK   P ++EE   MS VPY+S +GSLMYAMVCTRPD
Sbjct: 1040 VLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASTIGSLMYAMVCTRPD 1099

Query: 2500 IAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLD 2679
            IAHAVG VSRF+S PGK++WEAVKWILRYLKG+   CLC+ GA   L+GY DAD AGD+D
Sbjct: 1100 IAHAVGIVSRFMSRPGKQNWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDID 1159

Query: 2680 SRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQ 2859
            SRKST+GF++T  G A+SW S LQK V LSTT          GKEM+WL  +L ELG KQ
Sbjct: 1160 SRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQ 1219

Query: 2860 KDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLT 3039
            +   +H DSQSA+ L+KNS +HS++KHI  +YH+IR  +E + + L KI   +NP+DMLT
Sbjct: 1220 EMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLT 1279

Query: 3040 KVVTREKLELC 3072
            K VT EKL+LC
Sbjct: 1280 KGVTIEKLKLC 1290


>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
          Length = 1261

 Score = 1002 bits (2590), Expect = 0.0
 Identities = 524/1039 (50%), Positives = 675/1039 (64%), Gaps = 8/1039 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H TPH++    Y AGDFG V +                    GS   L+ VR++PDLR
Sbjct: 256  SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRYIPDLR 315

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
             NL+S   LD +G+   F  GTWK+++G  V+ARG    TLY T      D++ +A+   
Sbjct: 316  RNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYMTSCP--RDTIAVADAST 373

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
              +LWH+RLGHMSEK +  L+ K  +   K    D C  C+ GKQ+              
Sbjct: 374  DTSLWHRRLGHMSEKWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAE 433

Query: 541  XXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                VH+D+ GP  V SLGG++Y++TFI+D+SRK+WVYFLK K  VF  FK +  MVE E
Sbjct: 434  KLELVHTDLWGPSPVASLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETE 493

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            TG K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NGVAERMNRT+ ER RSM
Sbjct: 494  TGLKVKCLRSDNGGEYIDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 553

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
               A LPK FW +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+
Sbjct: 554  RLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHI 613

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPT-- 1251
              + R KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D    T  
Sbjct: 614  DSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSD 673

Query: 1252 ---MSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIP 1422
               + QK +    + +       + G+   E++                           
Sbjct: 674  VTEIDQKKSEFVNLDELTESTVQKGGEEDKENV--------------------------- 706

Query: 1423 SESQNDGGSPQIVPEVXXXXXXXXXXXXYSES-DYLLLTEDGEPESFQEAVSHKDKEKWL 1599
              SQ D  +P  + EV            YS   +YLLLT+ GEPE + EA+  ++  KW 
Sbjct: 707  -NSQVDLSTP--IVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWE 763

Query: 1600 QAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKK 1779
             AM+DEM+SL  N T+++ ELP GKKAL NKWV+++K +  G   ++KARLVVKGFQQK+
Sbjct: 764  LAMKDEMDSLLGNQTWZLTELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKE 822

Query: 1780 GIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEIS 1959
            GID+ EIFSPVVKM++IR++LG+VA+ NL LEQ+DVKTAFLHGDL+E++YM QPEGF + 
Sbjct: 823  GIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQ 882

Query: 1960 G-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXX 2136
            G +NLVCKL+KSLYGLKQAPRQWY KFD+ M   G+K+  AD C Y + F D ++     
Sbjct: 883  GQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSF-DNSYIILLL 941

Query: 2137 XXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIE 2316
                    G D  KI+ LKK+LSK F MKDLG A+QILGM+I+RD+ N  L LSQ +Y++
Sbjct: 942  YVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVK 1001

Query: 2317 RVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRP 2496
            +VL RFNMN AKPVS PL +HFKLSK   P ++EE   MS VPY+SA+GSLMYAMVCTR 
Sbjct: 1002 KVLXRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPYASAIGSLMYAMVCTRL 1061

Query: 2497 DIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDL 2676
            DIAHAVG VSRF+S PGK+HWEAVKWILRYLKG+   CLC+ GA   L+GY DAD AGD+
Sbjct: 1062 DIAHAVGVVSRFMSXPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDI 1121

Query: 2677 DSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIK 2856
            DSRKST+GF++T  G A+SW S LQK V LSTT          GKEM+WL  +L ELG K
Sbjct: 1122 DSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKK 1181

Query: 2857 QKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDML 3036
            Q+   +H DSQSA+ L+KNS +HS++KHI  +YH+IR  +E + + L KI   +NP+DML
Sbjct: 1182 QEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADML 1241

Query: 3037 TKVVTREKLELCRDIAGML 3093
            TK VT EKL+LC    G+L
Sbjct: 1242 TKGVTIEKLKLCAASIGLL 1260


>emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera]
          Length = 1298

 Score =  991 bits (2563), Expect = 0.0
 Identities = 525/1039 (50%), Positives = 669/1039 (64%), Gaps = 8/1039 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H TPH++    Y AGDFG V +                    GS   L+ VRH+PDLR
Sbjct: 293  SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLR 352

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
             NL+S   LD +G+   F  GTWK+++G  V+ARG    TLY T      D++ +A+   
Sbjct: 353  RNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTXTLYMTSCP--RDTIAVADAST 410

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
              +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GKQ+              
Sbjct: 411  DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAE 470

Query: 541  XXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                VH+D+ GP  V SLGG++Y++TFIDD+SRK+WVYFLK K  VF  FK +  MVE E
Sbjct: 471  KLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFXTFKKWKAMVETE 530

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            T  K KCLRSDNGGEY    F  YC   GI  EKT+P TPQ NGV ER N T+ ER RSM
Sbjct: 531  TXLKXKCLRSDNGGEYIDGGFSEYCAAQGIXMEKTIPGTPQQNGVXERXNXTLNERARSM 590

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
               A LPK F  +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+
Sbjct: 591  RLHAGLPKTFXADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHI 650

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPT-- 1251
              +   KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D    T  
Sbjct: 651  DSDAXSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTXD 710

Query: 1252 ---MSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIP 1422
               + QK +    + +       + G+   E++                           
Sbjct: 711  VTEIDQKKSEFVNLDEXTESTVQKGGEKNKENV--------------------------- 743

Query: 1423 SESQNDGGSPQIVPEVXXXXXXXXXXXXYSES-DYLLLTEDGEPESFQEAVSHKDKEKWL 1599
              SQ    +P  V EV            YS   +YLLLT+ GEPE + EA+  ++  KW 
Sbjct: 744  -NSQVXLSTP--VAEVRRSXRNIRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWE 800

Query: 1600 QAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKK 1779
             AM+DEM+SL  N T+E+ ELP GKKAL NKWV+++K +  G   ++KARLVVKGFQQK+
Sbjct: 801  LAMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKE 859

Query: 1780 GIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEIS 1959
            GID+ EIFSPVVKM++IR++LG+VA+ NL LEQ+DVKTAFLHGDL+E++YM QPEGF + 
Sbjct: 860  GIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQ 919

Query: 1960 G-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXX 2136
            G +NLVCKL+KSLYGLKQAPRQWY KFD+ M   G+K+  AD C Y + F D ++     
Sbjct: 920  GQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYXKSF-DNSYIILLL 978

Query: 2137 XXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIE 2316
                    G D  KI+ LKK+LSK F MKDLG A+QILGM+I+RD+ N  L LSQ +Y++
Sbjct: 979  YVDDMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVK 1038

Query: 2317 RVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRP 2496
            +VL RFNMN AKPVS PL +HFKLSK   P ++EE   MS VPY+SA+GSLMYAMVCTRP
Sbjct: 1039 KVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRP 1098

Query: 2497 DIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDL 2676
            DIAHAVG VSRF+S PGK HWEAVKWILRYLKG+   CLC+ GA   L+GY DAD AGD+
Sbjct: 1099 DIAHAVGVVSRFMSRPGKXHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDI 1158

Query: 2677 DSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIK 2856
            DSRKST GF++T  G A+SW S LQK V LSTT          GKEM+WL  +L ELG K
Sbjct: 1159 DSRKSTXGFVFTLGGTAISWTSNLQKIVTLSTTEXEYVAATEAGKEMIWLHGFLDELGKK 1218

Query: 2857 QKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDML 3036
            Q+   +H DSQSA+ L+KNS +HS++KHI  +YH+IR  +E + + L KI   +NP+DML
Sbjct: 1219 QEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADML 1278

Query: 3037 TKVVTREKLELCRDIAGML 3093
            TK VT EKL+LC    G+L
Sbjct: 1279 TKGVTIEKLKLCAASIGLL 1297


>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1269

 Score =  988 bits (2555), Expect = 0.0
 Identities = 518/1037 (49%), Positives = 665/1037 (64%), Gaps = 7/1037 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H T  K+ F  Y +G+ G V +                K N GS   LK+VRH+PDL 
Sbjct: 271  SFHATSQKELFENYVSGNLGKVYLGNEQSCEIVGKGVVKIKLN-GSVWELKNVRHIPDLT 329

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
             NL+S   L   GY   F    WK+S+G M +ARG   GTLYKT     T++ ++    A
Sbjct: 330  KNLISVGQLASDGYTTIFQGEQWKISKGAMTIARGKKSGTLYKT-----TEACHLITVAA 384

Query: 361  SQN--LWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXX 534
            + N  LWHQRLGHMSEKG+  +  K  +   +   ++ C  C+FGKQ+            
Sbjct: 385  NDNPNLWHQRLGHMSEKGMKIMHSKGKLPGLQSMEIEMCEDCIFGKQKRVSFQKGGRTPK 444

Query: 535  XXXXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVE 711
                  VHSDV GP  V S+ G +YF+TFIDD SRK+WVYFLK K +VFE FK++  MVE
Sbjct: 445  KERLELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVE 504

Query: 712  RETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVR 891
             ETG K+K LR+DNGGEY    F  +C  +GIR E+TVP TPQ NGVAERMNRT+ ER R
Sbjct: 505  NETGLKIKKLRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERAR 564

Query: 892  SMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYA 1071
            SM   + LPK FW EAV  A YLINR PSVPL  ++PE++WSGK+   SHLRVFGC+AY 
Sbjct: 565  SMRMQSGLPKQFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYV 624

Query: 1072 HVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPT 1251
            H+S + R KLD ++  C FIGYG++EFGYRLWD + KK+IRSRDV+F+E    +D +  +
Sbjct: 625  HISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIFNEGVMYKDKQNTS 684

Query: 1252 MSQKSNIG---AQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIP 1422
             S    I     ++ DA   P V     V                               
Sbjct: 685  ASNSKPIEPTYVEVDDALESPPVESSQSV------------------------------- 713

Query: 1423 SESQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQ 1602
             ES       Q VPE                 +Y+LLT+ GEPE + EA   +D  KW  
Sbjct: 714  -ESIEPDRGQQCVPEPELRRSSRVPVPNRRYMNYMLLTDGGEPEDYSEACQTRDASKWEL 772

Query: 1603 AMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKG 1782
            AM++EM+SL  N T+E+ +LP GKKAL NKWV+++K++  G   ++KARLVVKGFQQK+G
Sbjct: 773  AMKEEMKSLISNQTWELAKLPMGKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEG 831

Query: 1783 IDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISG 1962
            +D+ EIFSPVVK+ +IR +L +VAS  L LEQ+DVKTAFLHGDL EEIYM QPEGF   G
Sbjct: 832  VDYTEIFSPVVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKG 891

Query: 1963 -DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXX 2139
             +N+VC+LKKSLYGLKQAPRQWY KF+S M  +G+KK NAD C + +++ + ++      
Sbjct: 892  KENMVCRLKKSLYGLKQAPRQWYRKFESFMHKEGFKKCNADHCCFFKRY-NSSYIILLLY 950

Query: 2140 XXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIER 2319
                   G +  +I  LKK+LSK FDMKDLGPA++ILGMQI RD++   L LSQ +YI R
Sbjct: 951  VDDMLVAGSNMIEIRNLKKQLSKEFDMKDLGPAKKILGMQITRDKQKGTLQLSQAEYINR 1010

Query: 2320 VLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPD 2499
            VL+RFNM+NAKPVS PLA+HF+LS    P ++EE   M+  PY+SA+GSLMYAMVCTRPD
Sbjct: 1011 VLQRFNMSNAKPVSTPLASHFRLSTDQSPKTEEEKELMAKTPYASAIGSLMYAMVCTRPD 1070

Query: 2500 IAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLD 2679
            I +AVG VSRF+SNPGK HWEAVKWILRYL+ T + CLC+   +  ++GY DAD AG++D
Sbjct: 1071 IGYAVGVVSRFMSNPGKAHWEAVKWILRYLRATKEKCLCFSKGELKVQGYVDADFAGEID 1130

Query: 2680 SRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQ 2859
             R+ST+G+++T    AVSW S++QK VALSTT           KE++WL+  L ELG  Q
Sbjct: 1131 HRRSTTGYIFTVGTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQ 1190

Query: 2860 KDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLT 3039
            +   +H DSQSA+ L+KNS +HSRTKHID+RYH+IR  +E + L L KI   +NP+DMLT
Sbjct: 1191 ERSVLHSDSQSAIHLAKNSTFHSRTKHIDLRYHFIRSLLEDEVLTLRKILGSKNPADMLT 1250

Query: 3040 KVVTREKLELCRDIAGM 3090
            KVVT EKL LC    G+
Sbjct: 1251 KVVTTEKLRLCSTSIGL 1267


>emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera]
          Length = 1287

 Score =  973 bits (2516), Expect = 0.0
 Identities = 516/1045 (49%), Positives = 663/1045 (63%), Gaps = 14/1045 (1%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            S+H TPH++    Y AGDFG V +                    GS   L+ VRH+PDLR
Sbjct: 293  SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLR 352

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEA 360
             NL+S   LD +G+   F  GTWK+++G  V+A G   GTLY T      D++ +A+   
Sbjct: 353  RNLISVGQLDDEGHAILFVGGTWKVTKGARVLAHGKKTGTLYMTSCP--RDTIAVADAST 410

Query: 361  SQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXX 540
              +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GKQ+              
Sbjct: 411  DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAE 470

Query: 541  XXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 717
                VH+D+ GP  V SLGG++Y++TFIDD+SRK W                   MVE E
Sbjct: 471  KLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKKW-----------------KXMVETE 513

Query: 718  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 897
            T  K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NGVAERMNRT+ ER RSM
Sbjct: 514  TSLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 573

Query: 898  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1077
               A LPK FW +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+
Sbjct: 574  RLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCISYVHI 633

Query: 1078 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMED-----IE 1242
              + R KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D      +
Sbjct: 634  DSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSSVVSD 693

Query: 1243 KPTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIP 1422
               + QK +    + +       + G+   E++                           
Sbjct: 694  VTEIDQKKSEFVNLDELTKSTVQKGGEEDKENV--------------------------- 726

Query: 1423 SESQNDGGSPQIVPEVXXXXXXXXXXXXYSES-DYLLLTEDGEPESFQEAVSHKDKEKWL 1599
              SQ D  +P  V EV            YS   +YLLLT+ GEPE + EA+  ++  KW 
Sbjct: 727  -NSQVDLSTP--VVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWE 783

Query: 1600 QAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKK 1779
             AM+DEM+SL  N T+E+ ELP GKKAL NKWV+++K +  G   ++KARLVVKGFQQK+
Sbjct: 784  LAMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKE 842

Query: 1780 GIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEIS 1959
            GID+ EIFSPVVKM++IR++LG+VA+ NL LEQ+DVKTAFLHGDL+E++YM QPEGF + 
Sbjct: 843  GIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQ 902

Query: 1960 G-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXX 2136
            G +NLVCKL+KSLYGLKQAPRQWY KFD+ M   G+K+  AD C Y++ F D ++     
Sbjct: 903  GQENLVCKLRKSLYGLKQAPRQWYKKFDNXMHRIGFKRCEADHCCYVKSF-DNSYIILLL 961

Query: 2137 XXXXXXXXGKDATKISQLKK------ELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLS 2298
                    G D  KI+ LKK      +LSK F MKDLG A+QILGM+I+RD+ N  L LS
Sbjct: 962  YVDDMLIVGSDIEKINNLKKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLS 1021

Query: 2299 QEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYA 2478
            Q +Y+++VL RFNMN AKPV  PL +HFKLSK   P ++EE   MS VPY+SA+GSLMYA
Sbjct: 1022 QSEYVKKVLSRFNMNEAKPVXTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYA 1081

Query: 2479 MVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDA 2658
            MVCTRPDIAHAVG VSRF+S PGK+HWEAVKWILRYLKG+   CLC+ GA   L+GY DA
Sbjct: 1082 MVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDA 1141

Query: 2659 DMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYL 2838
            D AGD+DSRKST+GF++T  G  +SW S LQK V LSTT          GKEM+WL  +L
Sbjct: 1142 DFAGDIDSRKSTTGFVFTLGGTXISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFL 1201

Query: 2839 QELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKE 3018
             ELG KQ+   +H DSQSA+ L+KNS +HS++KHI  +YH+IR  +E + + L KI   +
Sbjct: 1202 DELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSK 1261

Query: 3019 NPSDMLTKVVTREKLELCRDIAGML 3093
            NP+DMLTK VT EKL+LC    G+L
Sbjct: 1262 NPADMLTKGVTIEKLKLCAASIGLL 1286


>emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera]
          Length = 1211

 Score =  948 bits (2451), Expect = 0.0
 Identities = 503/990 (50%), Positives = 644/990 (65%), Gaps = 3/990 (0%)
 Frame = +1

Query: 133  GSTITLKDVRHVPDLRLNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKT 312
            GS   L+ VRH+P+LR NL+S   LD +G+   F  GTWK+++G  V+A G   GTLY T
Sbjct: 276  GSVWLLEKVRHIPELRRNLISIGQLDDEGHAILFVGGTWKVTKGXRVLAHGKKTGTLYMT 335

Query: 313  HVKICTDSLNIAEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGK 492
                  D++ +A+     +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GK
Sbjct: 336  SCP--RDTIVVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGK 393

Query: 493  QQXXXXXXXXXXXXXXXXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKD 669
            Q+                  VH+D+ GP  V SLGG++Y++TFIDD+SRK+WVYFLK K 
Sbjct: 394  QKKVSFLKTGRTSKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKS 453

Query: 670  QVFEYFKLFHVMVERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNG 849
             VF  FK + VMVE ETG K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NG
Sbjct: 454  DVFVTFKKWKVMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNG 513

Query: 850  VAERMNRTIMERVRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDP 1029
            VAERMNRT+ ER RSM   A LPK FW +AV  A YLINR PS P+ F + E++WSGK+ 
Sbjct: 514  VAERMNRTLNERARSMRLHAGLPKNFWADAVSTAAYLINRGPSXPMEFRLXEEVWSGKEV 573

Query: 1030 SYSHLRVFGCLAYAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVV 1209
             +SHL+VFGC++Y H+  + R KLDA++  C FIGYGDE+FGYR                
Sbjct: 574  KFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYR---------------- 617

Query: 1210 FHESKTMEDIEKPTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXX 1389
               + T + IE   + QK +    + +       + G+   E++                
Sbjct: 618  --STVTSDVIE---IDQKKSEFVNLDELTESTVQKGGEEDKENV---------------- 656

Query: 1390 XXXXLPNVPIPSESQNDGGSPQIVPEVXXXXXXXXXXXXYSES-DYLLLTEDGEPESFQE 1566
                         SQ D  +P  V EV            YS   +YLLLT+  EPE + E
Sbjct: 657  ------------NSQVDLSTP--VAEVRRSSRNIRPLQRYSPVLNYLLLTDGDEPEGYDE 702

Query: 1567 AVSHKDKEKWLQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKA 1746
            A+  ++  KW  AM+DEM+SL  N T+E+ ELP GKKAL NKWV+++K +  G   ++KA
Sbjct: 703  ALQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWVYRIKNEYDGSK-RYKA 761

Query: 1747 RLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEI 1926
            RLVVKGFQQK+GID+ EIFSPVVKM++IR++LG+VA+ NL LEQ+DVKTAFLHGDL+E++
Sbjct: 762  RLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAKNLHLEQLDVKTAFLHGDLEEDL 821

Query: 1927 YMEQPEGFEISG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQK 2103
            YM QPEGF + G +NLVCKL+KSLYGLKQAPRQWY KFD+ M   G+K+  AD C Y + 
Sbjct: 822  YMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKS 881

Query: 2104 FADGNFXXXXXXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNR 2283
            F D ++             G D  KI+ LKK+LSK F MKDLG A+QILGM+I+RD+ N 
Sbjct: 882  F-DNSYIILLLYVDDMLITGFDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANG 940

Query: 2284 RLWLSQEKYIERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVG 2463
             L LSQ +Y+++VL RFNMN AKPVS PL +HFKLSK   P ++EE   MS VPY+SA+G
Sbjct: 941  TLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIG 1000

Query: 2464 SLMYAMVCTRPDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLE 2643
            SLMYAMVCTRPDIAHAVG VSRF+S PGK+HWEAVKWILRYLKG+   CLC+ GA   L+
Sbjct: 1001 SLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQ 1060

Query: 2644 GYTDADMAGDLDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLW 2823
            GY DAD AGD+DSRKST+GF++T  G  +SW S LQK V LSTT          GKEM+W
Sbjct: 1061 GYVDADFAGDIDSRKSTTGFVFTLGGTTISWTSNLQKIVTLSTTEAEYVAATEAGKEMIW 1120

Query: 2824 LKRYLQELGIKQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVK 3003
            L  +L ELG KQ+   +H DSQSA+ L+KNS +HS++K+I  +YH+IR  +E + + L K
Sbjct: 1121 LHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKNIQTKYHFIRYLVEDKLVILEK 1180

Query: 3004 IHTKENPSDMLTKVVTREKLELCRDIAGML 3093
            I   +NP++MLTK VT EKL+LC    G+L
Sbjct: 1181 ICGSKNPANMLTKGVTIEKLKLCAASIGLL 1210


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  935 bits (2417), Expect = 0.0
 Identities = 485/1036 (46%), Positives = 655/1036 (63%), Gaps = 5/1036 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            ++H+TP +D+F TY+    G V M                K   G+  TL++VRHV +L 
Sbjct: 298  TWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELA 357

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGH-ICGTLYKT---HVKICTDSLNIA 348
             NLLS   LD  GY      G  K+ +G++VV +   +   LY       ++   S+ + 
Sbjct: 358  KNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVAVG 417

Query: 349  EKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXX 528
             +E +  +WH+RLGHMSE+GL  L ++ LI   K  +L  C HC+  KQ           
Sbjct: 418  SQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTAR 477

Query: 529  XXXXXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMV 708
                   +HSDV    EV S+GG KYF++FIDD SR+LWVY +K K  V+  FK F   V
Sbjct: 478  SKHILDLIHSDVWESPEV-SIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQV 536

Query: 709  ERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERV 888
            E ETG ++KCLR+DNGGEYT   F A+CK  GI  + TV  TPQ NGVAERMNRT++ER 
Sbjct: 537  ELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 889  RSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAY 1068
            R+ML  A L K FW EA + ACY+INRSPS  +  + P ++W GK   YS LRVFGC  Y
Sbjct: 597  RAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGCPVY 656

Query: 1069 AHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKP 1248
               + + R KLD ++  C F+GY D   GYRLWDP  +K+  SRDV+F        +E  
Sbjct: 657  VMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIF--------VENE 708

Query: 1249 TMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPSE 1428
               ++ N G     A  E   + G+   E  P                         P+E
Sbjct: 709  LQKEQKNDGTTKETATVEIEEKSGEENSEAEPEHEEQE-------------------PNE 749

Query: 1429 SQNDGGSPQIVPEVXXXXXXXXXXXXYSESDYLLLTEDGEPESFQEAVSHKDKEKWLQAM 1608
              +    P+                  S   Y LL+EDGEP +F EAV+  D   W+ AM
Sbjct: 750  VND--AEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAM 807

Query: 1609 QDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQKKGID 1788
            Q+E+E+L +N+T+E+VELPKG+KA+ NKWVFK+K+DG+ +V +++ARLVVKG+ QK+GID
Sbjct: 808  QEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARLVVKGYAQKEGID 867

Query: 1789 FDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEISG-D 1965
            F+EIFSPVV++T+IR++L + A+  L LEQ+DVKTAFLHG+L+EEIYM QPEGFE    +
Sbjct: 868  FNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERE 927

Query: 1966 NLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXXXXXX 2145
            NLVC+L KSLYGLKQAPR WY +FDS ++S GY + ++D C Y ++F DG+F        
Sbjct: 928  NLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVD 987

Query: 2146 XXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYIERVL 2325
                 G +  ++ +LK +L++ FDMKDLGPA +ILGMQI RDRK+R++WLSQ+ Y+++VL
Sbjct: 988  DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVL 1047

Query: 2326 ERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIA 2505
             RFNM +  P+S PL  ++KLS S  PSS+ E  EMS VPY+SAVGSLMYAM+CTRPDIA
Sbjct: 1048 RRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIA 1107

Query: 2506 HAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGDLDSR 2685
             AVGTVSRF+++PGKEHW AVK ILRY++GTS   LC+GG++  + GY D+D AGDLD R
Sbjct: 1108 QAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFTIRGYVDSDFAGDLDKR 1167

Query: 2686 KSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGIKQKD 2865
            KST+G+++T AGGAVSW S+LQ  VALSTT           KE +W +R L+ELG KQ+ 
Sbjct: 1168 KSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQK 1227

Query: 2866 YKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDMLTKV 3045
              V+CDS SAL +++N  +HSRTKHI ++YH++RE +E   + + KIHTK+N +D++TK 
Sbjct: 1228 ITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKP 1287

Query: 3046 VTREKLELCRDIAGML 3093
            +  +K   CR   G+L
Sbjct: 1288 INSDKFIWCRSSYGLL 1303


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  935 bits (2416), Expect = 0.0
 Identities = 486/1040 (46%), Positives = 669/1040 (64%), Gaps = 9/1040 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            ++H+TP++D+F TY++   G+V M                K   G+  T++ VRHV  L+
Sbjct: 297  TWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLK 356

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGH-ICGTLY----KTHVKICTDSLNI 345
             NLLS   LD      H   G  K+ +G +VV +   I   LY    +T  +       I
Sbjct: 357  KNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAI 416

Query: 346  AEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXX 525
            +++EA+  +WH+RLGHMSE+GL  L ++ L++  K   L  C HC+  KQ          
Sbjct: 417  SQEEATM-MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTT 475

Query: 526  XXXXXXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVM 705
                    +HSDV    E+ S+GG KYF++FIDD SR+LWVY +K K  VF  FK F   
Sbjct: 476  RSKHILDLIHSDVWESPEI-SMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQ 534

Query: 706  VERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMER 885
            VE +TG ++KCLR+DNGGEY    F A+CK  GI+ + TV  TPQ NGVAERMNRT++ER
Sbjct: 535  VELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLER 594

Query: 886  VRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLA 1065
             R+ML  A L K FW EAV+ ACYLINRSPS  +  + P ++WSGK  +YS L VFGC  
Sbjct: 595  TRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSLHVFGCPV 654

Query: 1066 YAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1245
            Y   + + R KLD ++  CIF+GY D   GYRLWDP  +KV+ SRDVVF E++  ++ E 
Sbjct: 655  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQEN 714

Query: 1246 PTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPS 1425
             +  + ++I  +I   + +    + +   E                              
Sbjct: 715  DSTIKDTSI-VEIGGKSKKDDTSEAEQEHE------------------------------ 743

Query: 1426 ESQNDGGSPQIVPEVXXXXXXXXXXXXY---SESDYLLLTEDGEPESFQEAVSHKDKEKW 1596
            E + D  + + V ++            Y   S   Y LLTE+GEP +FQEA+   D  +W
Sbjct: 744  EQEPDEANDEEVQQIRRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQW 803

Query: 1597 LQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQK 1776
            + AM +E+E+L +N T+E+V+LPKG+KA+  KWV+K+K+DG+ +V +++ARLVVKG+ QK
Sbjct: 804  MAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQK 863

Query: 1777 KGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEI 1956
             GIDF+EIFSPVV++T+IRV+L + A+ NL LEQ+DVKTAFLHG+L+EEIYM QPEGF+ 
Sbjct: 864  AGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKE 923

Query: 1957 SG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXX 2133
             G +NLVC+L KSLYGLKQAPR WY +FDS ++S GY + ++D C Y  +F D +F    
Sbjct: 924  QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILL 983

Query: 2134 XXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYI 2313
                     G +  +I +LK +L++ FDMKDLGPA +ILGMQI RDRKNRR+WLSQ+ Y+
Sbjct: 984  LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 1043

Query: 2314 ERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTR 2493
             +VL RFNM + KP+S PL  ++KLS S  PS++ E  EMS VPY+SAVGSLMYAM+CTR
Sbjct: 1044 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103

Query: 2494 PDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGD 2673
            PDIA AVG VSRF+++PG+EHW  VK ILRY+KGTS + LC+ G++ V+ GY D+D AGD
Sbjct: 1104 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFVVRGYVDSDFAGD 1163

Query: 2674 LDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGI 2853
            LD RKST+G+++T AGGAVSW S+LQ  VALSTT           KE +W++R L+ELG 
Sbjct: 1164 LDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGH 1223

Query: 2854 KQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDM 3033
            KQ+   V+CDSQSAL +++N  +HSRTKHI ++YH++RE +E  ++ + KIHTK+N +D+
Sbjct: 1224 KQEKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGKVDMQKIHTKDNIADV 1283

Query: 3034 LTKVVTREKLELCRDIAGML 3093
            +TK V  +K   CR + G+L
Sbjct: 1284 MTKPVNTDKFTWCRSLFGLL 1303


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  933 bits (2411), Expect = 0.0
 Identities = 485/1040 (46%), Positives = 669/1040 (64%), Gaps = 9/1040 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            ++H+TP++D+F TY++   G+V M                K   G+  T++ VRHV  L+
Sbjct: 248  TWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLK 307

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGH-ICGTLY----KTHVKICTDSLNI 345
             NLLS   LD      H   G  K+ +G +VV +   I   LY    +T  +       I
Sbjct: 308  KNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAI 367

Query: 346  AEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXX 525
            +++EA+  +WH+RLGHMSE+GL  L ++ L++  K   L  C HC+  KQ          
Sbjct: 368  SQEEATM-MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTT 426

Query: 526  XXXXXXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVM 705
                    +HSDV    E+ S+GG KYF++FIDD SR+LWVY +K K  VF  FK F   
Sbjct: 427  RSKHILDLIHSDVWESPEI-SMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQ 485

Query: 706  VERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMER 885
            VE +TG ++KCLR+DNGGEY    F A+CK  GI+ + TV  TPQ NGVAERMNRT++ER
Sbjct: 486  VELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLER 545

Query: 886  VRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLA 1065
             R+ML  A L K FW EAV+ ACYLINRSPS  +  + P ++W+GK  +YS L VFGC  
Sbjct: 546  TRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPV 605

Query: 1066 YAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1245
            Y   + + R KLD ++  CIF+GY D   GYRLWDP  +KV+ SRDVVF E++  ++ E 
Sbjct: 606  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQEN 665

Query: 1246 PTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPS 1425
             +  + ++I  +I   + +    + +   E                              
Sbjct: 666  DSTIKDTSI-VEIGGKSKKDDTSEAEQEHE------------------------------ 694

Query: 1426 ESQNDGGSPQIVPEVXXXXXXXXXXXXY---SESDYLLLTEDGEPESFQEAVSHKDKEKW 1596
            E + D  + + V ++            Y   S   Y LLTE+GEP +FQEA+   D  +W
Sbjct: 695  EQEPDEANDEEVQQIRRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQW 754

Query: 1597 LQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQK 1776
            + AM +E+E+L +N T+E+V+LPKG+KA+  KWV+K+K+DG+ +V +++ARLVVKG+ QK
Sbjct: 755  MAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQK 814

Query: 1777 KGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEI 1956
            +GIDF+EIFSPVV++T+IRV+L + A+ NL LEQ+DVKTAFLHG+L+EEIYM QPEGF+ 
Sbjct: 815  EGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKE 874

Query: 1957 SG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXX 2133
             G +NLVC+L KSLYGLKQAPR WY +FDS ++S GY + ++D C Y  +F D +F    
Sbjct: 875  QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILL 934

Query: 2134 XXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYI 2313
                     G +  +I +LK +L++ FDMKDLGPA +ILGMQI RDRKNRR+WLSQ+ Y+
Sbjct: 935  LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 994

Query: 2314 ERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTR 2493
             +VL RFNM + KP+S PL  ++KLS S  PS++ E  EMS VPY+SAVGSLMYAM+CTR
Sbjct: 995  LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1054

Query: 2494 PDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGD 2673
            PDIA AVG VSRF+++PG+EHW  VK ILRY+KGTS + LC+ G++  + GY D+D AGD
Sbjct: 1055 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFFVRGYVDSDFAGD 1114

Query: 2674 LDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGI 2853
            LD RKST+G+++T AGGAVSW S+LQ  VALSTT           KE +W++R L+ELG 
Sbjct: 1115 LDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGH 1174

Query: 2854 KQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDM 3033
            KQ+   V+CDSQSAL +++N  +HSRTKHI I+YH++RE +E  ++ + KIHTK+N +D+
Sbjct: 1175 KQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADV 1234

Query: 3034 LTKVVTREKLELCRDIAGML 3093
            +TK V  +K   CR + G+L
Sbjct: 1235 MTKPVNTDKFTWCRSLFGLL 1254


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  933 bits (2411), Expect = 0.0
 Identities = 485/1040 (46%), Positives = 669/1040 (64%), Gaps = 9/1040 (0%)
 Frame = +1

Query: 1    SYHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLR 180
            ++H+TP++D+F TY++   G+V M                K   G+  T++ VRHV  L+
Sbjct: 297  TWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLK 356

Query: 181  LNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGH-ICGTLY----KTHVKICTDSLNI 345
             NLLS   LD      H   G  K+ +G +VV +   I   LY    +T  +       I
Sbjct: 357  KNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAI 416

Query: 346  AEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXX 525
            +++EA+  +WH+RLGHMSE+GL  L ++ L++  K   L  C HC+  KQ          
Sbjct: 417  SQEEATM-MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTT 475

Query: 526  XXXXXXXXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVM 705
                    +HSDV    E+ S+GG KYF++FIDD SR+LWVY +K K  VF  FK F   
Sbjct: 476  RSKHILDLIHSDVWESPEI-SMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQ 534

Query: 706  VERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMER 885
            VE +TG ++KCLR+DNGGEY    F A+CK  GI+ + TV  TPQ NGVAERMNRT++ER
Sbjct: 535  VELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLER 594

Query: 886  VRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLA 1065
             R+ML  A L K FW EAV+ ACYLINRSPS  +  + P ++W+GK  +YS L VFGC  
Sbjct: 595  TRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPV 654

Query: 1066 YAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1245
            Y   + + R KLD ++  CIF+GY D   GYRLWDP  +KV+ SRDVVF E++  ++ E 
Sbjct: 655  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQEN 714

Query: 1246 PTMSQKSNIGAQISDAAPEPFVRDGDVVPEDIPXXXXXXXXXXXXXXXXXXXLPNVPIPS 1425
             +  + ++I  +I   + +    + +   E                              
Sbjct: 715  DSTIKDTSI-VEIGGKSKKDDTSEAEQEHE------------------------------ 743

Query: 1426 ESQNDGGSPQIVPEVXXXXXXXXXXXXY---SESDYLLLTEDGEPESFQEAVSHKDKEKW 1596
            E + D  + + V ++            Y   S   Y LLTE+GEP +FQEA+   D  +W
Sbjct: 744  EQEPDEANDEEVQQIRRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQW 803

Query: 1597 LQAMQDEMESLQKNSTYEIVELPKGKKALRNKWVFKLKKDGSGKVVKHKARLVVKGFQQK 1776
            + AM +E+E+L +N T+E+V+LPKG+KA+  KWV+K+K+DG+ +V +++ARLVVKG+ QK
Sbjct: 804  MAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQK 863

Query: 1777 KGIDFDEIFSPVVKMTSIRVILGLVASMNLELEQMDVKTAFLHGDLKEEIYMEQPEGFEI 1956
            +GIDF+EIFSPVV++T+IRV+L + A+ NL LEQ+DVKTAFLHG+L+EEIYM QPEGF+ 
Sbjct: 864  EGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKE 923

Query: 1957 SG-DNLVCKLKKSLYGLKQAPRQWYTKFDSCMVSQGYKKTNADECVYIQKFADGNFXXXX 2133
             G +NLVC+L KSLYGLKQAPR WY +FDS ++S GY + ++D C Y  +F D +F    
Sbjct: 924  QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILL 983

Query: 2134 XXXXXXXXXGKDATKISQLKKELSKSFDMKDLGPAQQILGMQIVRDRKNRRLWLSQEKYI 2313
                     G +  +I +LK +L++ FDMKDLGPA +ILGMQI RDRKNRR+WLSQ+ Y+
Sbjct: 984  LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 1043

Query: 2314 ERVLERFNMNNAKPVSIPLANHFKLSKSACPSSKEEIGEMSSVPYSSAVGSLMYAMVCTR 2493
             +VL RFNM + KP+S PL  ++KLS S  PS++ E  EMS VPY+SAVGSLMYAM+CTR
Sbjct: 1044 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103

Query: 2494 PDIAHAVGTVSRFLSNPGKEHWEAVKWILRYLKGTSKICLCYGGADPVLEGYTDADMAGD 2673
            PDIA AVG VSRF+++PG+EHW  VK ILRY+KGTS + LC+ G++  + GY D+D AGD
Sbjct: 1104 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFFVRGYVDSDFAGD 1163

Query: 2674 LDSRKSTSGFLYTFAGGAVSWQSRLQKCVALSTTXXXXXXXXXXGKEMLWLKRYLQELGI 2853
            LD RKST+G+++T AGGAVSW S+LQ  VALSTT           KE +W++R L+ELG 
Sbjct: 1164 LDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGH 1223

Query: 2854 KQKDYKVHCDSQSALDLSKNSMYHSRTKHIDIRYHWIRETIERQQLKLVKIHTKENPSDM 3033
            KQ+   V+CDSQSAL +++N  +HSRTKHI I+YH++RE +E  ++ + KIHTK+N +D+
Sbjct: 1224 KQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADV 1283

Query: 3034 LTKVVTREKLELCRDIAGML 3093
            +TK V  +K   CR + G+L
Sbjct: 1284 MTKPVNTDKFTWCRSLFGLL 1303