BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00011778
         (3669 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...  1518   0.0  
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...  1222   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...  1173   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]    1170   0.0  
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...  1153   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...  1150   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...  1147   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]          1139   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...  1123   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...  1120   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]    1086   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]       1083   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]             1069   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]             1068   0.0  
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...  1065   0.0  
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...  1065   0.0  
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...  1064   0.0  
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...  1064   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]    1064   0.0  
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...  1063   0.0  

>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score = 1518 bits (3929), Expect = 0.0
 Identities = 748/1027 (72%), Positives = 848/1027 (82%), Gaps = 3/1027 (0%)
 Frame = +1

Query: 346  AKLDKDECAFCHEKGHWKKDCPKLKNKG--KAPQDACVAEGESEDEFSLVVSPLISRSDE 519
            AK+ KDECAFC EKGHWKKDCPKLKNKG  K   D+ VAE   + + SL VS   S S  
Sbjct: 13   AKVGKDECAFCREKGHWKKDCPKLKNKGQSKTVADSNVAEYVDDSDCSLAVSGSTSSSSA 72

Query: 520  WILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 699
            W+LDSGC+ HM P +EWF++F E+  GVVY  ND    T GIGSIRLKN DG+ R L DV
Sbjct: 73   WLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIGSIRLKNRDGAIRTLKDV 132

Query: 700  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNN-LYYYQGNTVIGT 876
            R+VP+L +NLIS+GALE KG  V    GV+K  SG+LVVMKG+R+NN LYYYQG T+IGT
Sbjct: 133  RFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQGTTIIGT 192

Query: 877  AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 1056
            AAVA S +EKE E+AKLWHMRLGHAGE+SL  L KQGLLK+++ CKLDFCEHCV GK+ R
Sbjct: 193  AAVASS-DEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTR 251

Query: 1057 VKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLG 1236
            VKFGTAIH+T+GILDYVHSDVWGPSKT SL G HY+VTF+DDFSRR+WVY MKTKDEVLG
Sbjct: 252  VKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLG 311

Query: 1237 IFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAER 1416
            IFLKWK R+E QTGRKIK  RTDNGGEYTSDPF++ C + GIVRHFTV+ TPQQNGVAER
Sbjct: 312  IFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAER 371

Query: 1417 MNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYD 1596
            MNRTL+EKVRCMLSNAGLG+Q WAEAV YA HLINRLPSSAIGGKTPLE W GKP TDYD
Sbjct: 372  MNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYD 431

Query: 1597 SLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAM 1776
            SL VFG  AYYHVKESKL+PRAK+A+FMGI SGVKGYRLWCLE+KK + SRDVTFDE  M
Sbjct: 432  SLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTM 491

Query: 1777 LKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQS 1956
            L  VT+E      Q+   TPKQVE E   + PA ++        + DEEEV  QEP  Q 
Sbjct: 492  LGKVTTE------QKKNGTPKQVEFERKIVFPANDEEKTPMVDEESDEEEVHIQEPPQQL 545

Query: 1957 EPIAVRRPRREIHKPARFADMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 2136
            E IA+R+P+R    PAR+ DMV+YA PV  DD+P T+ EAV+  E +KW+ AM EEM+SL
Sbjct: 546  ESIALRKPKRTTIMPARYVDMVSYASPVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESL 605

Query: 2137 QKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFS 2316
            ++N+TWK+  LPKGKKAIGCKWV+AKKDGF +K++VRYKARLVAKGYAQKEGIDYNEVFS
Sbjct: 606  RRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGIDYNEVFS 665

Query: 2317 PVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKL 2496
            PVVKHSSIR+               DVKTAFLHGDLEEEIYMTQPEGFKVAGKEN  CKL
Sbjct: 666  PVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQPEGFKVAGKENMFCKL 725

Query: 2497 IKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIAS 2676
             KSLYGLKQSPRQWYKRFDKFM+ QKYTRSKYDHCVYLRKL DGSFIYLLLYVDDMLIAS
Sbjct: 726  EKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHDGSFIYLLLYVDDMLIAS 785

Query: 2677 QSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMT 2856
            +++ EI+KLK QLN EFEMKDLGEAKKILGMEISRDR  G+LCLTQK+YLK+VL+RFG++
Sbjct: 786  KNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGIS 845

Query: 2857 ENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSV 3036
            + +KPVSTPLA H KLSA LSP++  E+ YM KVPYA+AVGSLMYAMVCTRPDIS AV V
Sbjct: 846  DESKPVSTPLASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGV 905

Query: 3037 VSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRS 3216
            VSRYMH+PGK HWQAVKWILRYILNTVDVGLVF+Q+ + GQ +VGYCDS+YAGDLD RRS
Sbjct: 906  VSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQE-QDGQNVVGYCDSNYAGDLDNRRS 964

Query: 3217 TTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIT 3396
            TTGY+FTLAKAPV W+STLQSTVALSTTEAEYMA++EAVKEAIWLQ LL +LG+ QKH+ 
Sbjct: 965  TTGYVFTLAKAPVCWRSTLQSTVALSTTEAEYMALTEAVKEAIWLQGLLGELGILQKHVK 1024

Query: 3397 VHCDSQS 3417
            VHCDSQS
Sbjct: 1025 VHCDSQS 1031


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 1222 bits (3163), Expect = 0.0
 Identities = 640/1216 (52%), Positives = 819/1216 (67%), Gaps = 11/1216 (0%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F      GT + +H+   N L+ +L N+DV   DED AL+LL SLP  FE+   + + GK
Sbjct: 105  FGLRMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGK 164

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDK 360
            D VSL  V +AL+S EL          I        +                  AK D 
Sbjct: 165  DTVSLEEVRSALHSRELRHKANGTSTDIQPSG-LFTSSRKGRKNGGKKNKPMSKGAKPD- 222

Query: 361  DECAFCHEKGHWKKDCPKLKNKG-KAPQDACVAEGE--SEDEFSLVVSPLISRSDEWILD 531
            D C +C EKGHWK DCPK K +  K    A VAE +  SE++ +LV       SD W+LD
Sbjct: 223  DVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLD 282

Query: 532  SGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVP 711
            SG +YH+ P +EWF  +E+++GG + M N + CK  G GSI+++ HDGS   L +VR+VP
Sbjct: 283  SGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVP 342

Query: 712  NLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVAD 891
             + KNLISL  L+SKG   + +DGVL+   GS +++KG+ R  LY+ QG+TV G+A VA 
Sbjct: 343  LMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVAS 402

Query: 892  SRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGT 1071
            S   ++ +  KLWH+RLGH GE+ +Q L+K+ LL   KV  L+FCEHCV GK  R KF  
Sbjct: 403  SEFHQK-DMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPK 461

Query: 1072 AIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKW 1251
            AIH T+G LDY+HSD WGP +  SLGG  +FV+ IDD+SR  WVY MK K E    F +W
Sbjct: 462  AIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEW 521

Query: 1252 KTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTL 1431
            K  +ENQTG+KIK LRTDNG E+    F + C   GI RH TVR TPQQNGVAERMN+TL
Sbjct: 522  KILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTL 581

Query: 1432 VEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVF 1611
            +E+ RCMLSNAGL R+ WAEAV+ A +LINR P + I  KTP+E+WSGK   DY +L+ F
Sbjct: 582  LERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGK-AADYSNLKAF 640

Query: 1612 GSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVT 1791
            G  AYYHV E KLEPRAK+ +F+G   GVKG+R+W    K+++ SR+V FDE  +L+T+ 
Sbjct: 641  GCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIV 700

Query: 1792 SEKTDSALQQVERTPKQVEVEEMAIIPAKND--NPVTEDLSDDDEEEVQTQEPLDQSEPI 1965
               T S    ++   KQVE +   +I  ++D   P  ED     E ++    P D  + I
Sbjct: 701  KPTTTSETGSLD---KQVEFQ---VIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSI 754

Query: 1966 AVRRPRRE-IHKPAR--FADMVAYALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEM 2127
            A  RPRR  +  P R  F DMV YAL V   +D   P T++EA+ S +SEKW  AM +EM
Sbjct: 755  AQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEM 814

Query: 2128 QSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2307
            +SL KN+TW +   P G+K I CKWVF KK+G      V+YKAR+VA+G+ Q+EG+DYNE
Sbjct: 815  ESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNE 874

Query: 2308 VFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2487
            +FSPVV+H+SIR+               DVKTAFLHG+LEEEIYMTQP+GF+V GKEN V
Sbjct: 875  IFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHV 934

Query: 2488 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDML 2667
            CKL KSLYGLKQSPRQWYKRFD +M+   YTRS YD CVY  +L D SFIYL+LYVDDML
Sbjct: 935  CKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDML 994

Query: 2668 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2847
            IA++ + +I KLK  L+ EFEMKDLG A+KILGMEI RDR   KL L+Q+ Y++KVL RF
Sbjct: 995  IAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARF 1054

Query: 2848 GMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 3027
            GM+ ++KP+ TP A ++ L+A  +P+++EE++YM +VPYA+AVGSLMYAMVCTRPD++ A
Sbjct: 1055 GMS-SSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHA 1113

Query: 3028 VSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 3207
            VSVVSR+M  PG+ HWQAVK I RY+  T DVGL++  D +    + GY DSDYAGD+D 
Sbjct: 1114 VSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQC--LVTGYSDSDYAGDVDT 1171

Query: 3208 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 3387
            RRS TGY+FTL  + VSWK+TLQ TV LSTTEAEYMA++EA KE IWL+ L+ DLG+   
Sbjct: 1172 RRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHD 1231

Query: 3388 HITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 3567
              TV+CDS SAI LAK+QV H RTKHIDVRYHF+R    E  I ++K+ T +NPADM TK
Sbjct: 1232 QATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTK 1288

Query: 3568 VVTSIKFKHCLDLINI 3615
             V   KF+HCLDL+NI
Sbjct: 1289 PVPQSKFQHCLDLLNI 1304


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 1173 bits (3035), Expect = 0.0
 Identities = 621/1237 (50%), Positives = 814/1237 (65%), Gaps = 34/1237 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++ DH++AF +++ADL +++V + +EDL L+LL SLP  + +   T+L+ +
Sbjct: 314  FLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSR 373

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDK 360
            D ++L  V  AL+  E            +  +  +V                   +   +
Sbjct: 374  DTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGR 433

Query: 361  DE-------CAFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEF 480
             +       C +C   GH   +C KL +K          GK  ++   A V + +S+ E 
Sbjct: 434  SKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAEL 493

Query: 481  SLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRL 660
             +  +     SD+WIL++ C YHM P ++WF  +E +  G V MG+D  C+  GIG++++
Sbjct: 494  LVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQI 553

Query: 661  KNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRN 837
            K  DG  R L+DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVVMK  I+  
Sbjct: 554  KMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSA 613

Query: 838  NLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCK 1014
            NLY+ +G T++G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + K
Sbjct: 614  NLYHLRGTTILGNVAAVSDSLSN--SDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGK 671

Query: 1015 LDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRR 1194
            L FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP++  S GG  Y +T +DD+SR+
Sbjct: 672  LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 731

Query: 1195 VWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHF 1374
            VW Y +K K +   +F +WKT +E QT RK+K+LRTDNG E+ S  F+  C   GIVRH+
Sbjct: 732  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 791

Query: 1375 TVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKT 1554
            TV  TPQQNGVAERMNRT++ K RC+LSNAGL +Q WAEAV+ A +LINR PS AI  KT
Sbjct: 792  TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 851

Query: 1555 PLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKK 1734
            P+EVWSG P  +Y  LRVFG  AY HV   KLEPRA + +F+G  SGVKGY+LWC E+KK
Sbjct: 852  PIEVWSGSP-ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKK 910

Query: 1735 ILFSRDVTFDEHAML-----KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTE 1899
            ++ SR+V F E  ML       V  E  + A  QVE         E   +    D PV E
Sbjct: 911  VVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIE 970

Query: 1900 DLSDDDEEEVQTQEPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVP 2058
                D    +  Q P      IA  RP+R I  P R+   A++VAYAL V ++      P
Sbjct: 971  ----DSNSSIVQQSP---KRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEP 1023

Query: 2059 FTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKN 2238
             T+ EA+ S +  +W  AM +EM+SL+KN TW++ +LPK KK I CKW+F +K+G  + +
Sbjct: 1024 STYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSD 1083

Query: 2239 DVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHG 2418
            + RYKARL+AKGY+Q  GID+N+VFSPVVKHSSIR                DVKTAFLHG
Sbjct: 1084 EARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHG 1143

Query: 2419 DLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDH 2598
            +LEE+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQWYKRFD FM+ QK+ RS YD 
Sbjct: 1144 ELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDS 1203

Query: 2599 CVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEIS 2778
            CVYL K+ DGS IYLLLYVDDMLIA++ + EI KLKAQL+ EFEMKDLG AKKILGMEI+
Sbjct: 1204 CVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEIT 1262

Query: 2779 RDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKV 2958
            R R S KL L+QK Y++KVL+RF M  + KPVSTPLA H +LS+ L P++D + +YM +V
Sbjct: 1263 RKRHSFKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRV 1321

Query: 2959 PYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFE 3138
            PY++AVGSLMYAMVC+RPD+S A+SVVSRYM +PGK HW+AV+WI RY+  T    L F 
Sbjct: 1322 PYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF- 1380

Query: 3139 QDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMA 3318
              G+   G+VGY DSD+AGDLD+ RS  GY+FT+    VSWK++LQ+TVALSTTEAEYMA
Sbjct: 1381 --GRSRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMA 1438

Query: 3319 VSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREI 3498
            +SEA KEAIWL+ L   L      I + CDSQSAI L K+Q+ H RTKHIDVRYHF+R +
Sbjct: 1439 ISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGL 1498

Query: 3499 LEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLI 3609
            + EG++ + KI   +NPADM+TK V + KF+ C  L+
Sbjct: 1499 IAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 1170 bits (3028), Expect = 0.0
 Identities = 618/1237 (49%), Positives = 816/1237 (65%), Gaps = 32/1237 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++ DH++AF ++VADL +++V + +EDL L+LL SLP  + +   T+L+ +
Sbjct: 16   FLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSR 75

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDK 360
            D ++L  V  AL++ E            +  +  +V                       +
Sbjct: 76   DTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGR 135

Query: 361  DE-------CAFCHEKGHWKKDCPKLKNKGKAPQD-------------ACVAEGESEDEF 480
             +       C +C   GH   +C KL++K K  +              A V + +S+ E 
Sbjct: 136  SKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAEL 195

Query: 481  SLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRL 660
             +  +     SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++
Sbjct: 196  LVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQI 255

Query: 661  KNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRN 837
            K  DG  R L DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVVMK  I+  
Sbjct: 256  KMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYA 315

Query: 838  NLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCK 1014
            NLY+ +G T++G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + K
Sbjct: 316  NLYHLRGTTILGNVAAVSDSLSN--SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGK 373

Query: 1015 LDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRR 1194
            L FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP++  S GG  Y +T +DD+SR+
Sbjct: 374  LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 433

Query: 1195 VWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHF 1374
            VW Y +K K +   +F +WKT +E QT RK+K+LRTDNG E  S  F+  C   GIVRH+
Sbjct: 434  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHY 493

Query: 1375 TVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKT 1554
            TV  TPQQNGVAERMNRT++ K RCMLSNA L +Q WAEAV+ A +LINR PS AI  KT
Sbjct: 494  TVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKT 553

Query: 1555 PLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKK 1734
            P+EVWSG P  +Y  LRVFG  AY HV   KLEPR  + +F+G  SGVKGY+LWC E+KK
Sbjct: 554  PIEVWSGSP-ANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKK 612

Query: 1735 ILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE-VEEMAIIPAKNDNPVTED--L 1905
            ++ SR+V F E  ML    S  T+  ++  E+   QVE +      P K D  + +D  +
Sbjct: 613  VVISRNVVFHESIMLHDKPS--TNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPV 670

Query: 1906 SDDDEEEVQTQEPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFT 2064
             +D +  +  Q P      IA  RP+R    P R+   A++VAYAL V ++      P T
Sbjct: 671  IEDSDSSIVQQSP---KRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPST 727

Query: 2065 FREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDV 2244
            + +A+ S +  +W  AM +EM+SL+KN +W++ +LPK KK I CKW+F +K+G    ++ 
Sbjct: 728  YSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEA 787

Query: 2245 RYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDL 2424
            RYKARLVAKGY+Q  GID+N+VFSPVVKHSSIR                DVKTAFLHG+L
Sbjct: 788  RYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGEL 847

Query: 2425 EEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCV 2604
            EE+IYM QPEGF V GKEN VC+L KSLYGLKQSPRQWYKRFD FM+ QK+ RS YD CV
Sbjct: 848  EEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCV 907

Query: 2605 YLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRD 2784
            YL K+ DGS IYLLLYVDDMLIA++ + EI KLKAQL+ EFEMKDLG AKKILGMEI+R+
Sbjct: 908  YL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 966

Query: 2785 RTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPY 2964
            R SGKL L+QK Y++KVL RF M  + K VST LA H +LS+ L P++  + +YM +VPY
Sbjct: 967  RHSGKLYLSQKCYIEKVLHRFNM-HDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPY 1025

Query: 2965 ANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQD 3144
            ++AV SLMYAMVC+RPD+S A+SVVSRYM +PGK HW+AV+WI RY+  T    L F   
Sbjct: 1026 SSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF--- 1082

Query: 3145 GKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVS 3324
            G+   G+VGY DSD+AGDLD+RRS TGY+FT+    VSWK++LQ+TVALSTTEAEYMA+S
Sbjct: 1083 GRSSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAIS 1142

Query: 3325 EAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILE 3504
            EA KE IWL+ L  +L      I + CDSQSAI L K+Q+ H RTKHID+RYHF+R ++ 
Sbjct: 1143 EACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIA 1202

Query: 3505 EGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINI 3615
            EG++ + KI T +NP DM+TK V + KF+ C  L+ +
Sbjct: 1203 EGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGV 1239


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 576/1037 (55%), Positives = 750/1037 (72%), Gaps = 15/1037 (1%)
 Frame = +1

Query: 550  MSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNL 729
            M P K+ F   E ++ GVV MGND  CK  GIG+I++K HDG+ + L++VR++P+LK+NL
Sbjct: 1    MCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNL 60

Query: 730  ISLGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKE 909
            ISLG LES G   +   GVLK + G++V++K  R  +LY  QG+ V G+AAV+ S ++K+
Sbjct: 61   ISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKD 120

Query: 910  SEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTE 1089
              A KLWHMRLGH  EK +  L+KQGLL +  + KL+FCEHCV GKQKRV F TA H T+
Sbjct: 121  --ATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTK 178

Query: 1090 GILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIEN 1269
            G LDY+HSD+WGPSK PS GG  Y +T IDDFSR+VWVY ++ K+E    F KWKT +E 
Sbjct: 179  GTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVET 238

Query: 1270 QTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRC 1449
            QTG+K+K LRTDNG E+    F E C  +GI RH T+   PQQNGVAER+NRT++E+ RC
Sbjct: 239  QTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARC 298

Query: 1450 MLSNAGLGRQH--WAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 1623
            MLSNAGL  Q   W EA + A +LINR P S++  K P E+WSG P+ DY +LR+FG  A
Sbjct: 299  MLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPI-DYSNLRIFGCPA 357

Query: 1624 YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESK--KILFSRDVTFDEHAMLKT-VTS 1794
            Y HV + KL PRA + +F+G  S  KGYRLWC ESK  +++ SRDVTF+E A+L +   S
Sbjct: 358  YAHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDALLSSGKQS 417

Query: 1795 EKTDSALQQVERTPKQVEVEEMAIIPAKN--DNPVTEDLSDD--DEEEVQTQEPLDQSEP 1962
              + S+   ++ T ++VE+E  ++ P  +   +  TE   DD  D+  +Q QE  +    
Sbjct: 418  SVSSSSTNNLQGTSEKVELELKSVAPNVDVPSSSTTESSIDDHGDDHPIQQQEEYN---- 473

Query: 1963 IAVRRPRREIHKPARFAD--MVAYALPV---IDDDV-PFTFREAVRSPESEKWKGAMEEE 2124
            IA  R RR+I  PAR+ D  + AYAL +   ++DDV P ++ EAV   +S KW  AM EE
Sbjct: 474  IARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCVDSAKWLVAMNEE 533

Query: 2125 MQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYN 2304
            ++SL KN TW +T+LPKGK+ + CKW++ KKDG P   D R KARLV KG+ QKEGID+N
Sbjct: 534  IESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFN 593

Query: 2305 EVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENW 2484
            E+FSPVV+H+SIRI               DVKTAFLHG+LEEEIYM QPEGF V  KE+ 
Sbjct: 594  EIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHL 653

Query: 2485 VCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDM 2664
            VC+L KSLYGLKQ+PRQWYK+FD FM+GQ Y+RSKYD C+Y ++  DG+FIYLLLYVDDM
Sbjct: 654  VCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDM 713

Query: 2665 LIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQR 2844
            LIAS+ +  I KLKAQLN EFEMK+LG AKKILGMEI RDR  GKL L+Q++Y++++L R
Sbjct: 714  LIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDR 773

Query: 2845 FGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQ 3024
            F M  N KPVSTPLA H KLS+ L P+  EE + M  VPYA+AVGSLMYAMVCTRPD++ 
Sbjct: 774  FNM-NNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAY 832

Query: 3025 AVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLD 3204
            AVS+VSRYMH+PGK HW AVKWI RY+  T ++GLVF+++      + G+ DSDY GDLD
Sbjct: 833  AVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLD 892

Query: 3205 KRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQ 3384
            +RRS +GY+FTL  + +SWK++LQS  ALSTTEAEY++ +E VKEA+W++ L+++LG+ Q
Sbjct: 893  RRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQ 952

Query: 3385 KHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLT 3564
              +TV CDSQSAIHL KN   H +TKHIDV++HF+R+I+  G +LL+K+HT+ENPADMLT
Sbjct: 953  DVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLT 1012

Query: 3565 KVVTSIKFKHCLDLINI 3615
            K + + KF+HCL L+ +
Sbjct: 1013 KPLPNAKFQHCLGLVGL 1029


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1150 bits (2976), Expect = 0.0
 Identities = 605/1236 (48%), Positives = 805/1236 (65%), Gaps = 30/1236 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++  H+  F ++VADL++++V + DEDL L+LL SLP+ + +   T+L  +
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEAL-VAXXXXXXXXXXXXXXXXXXAKL- 354
            D+++L  V  AL + E            ++  EAL V                   +K  
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSK 224

Query: 355  ---DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLI 504
               +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  +
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCV 284

Query: 505  SRSDEWILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGST 681
            +  DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG T
Sbjct: 285  AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344

Query: 682  RVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQG 858
            R L +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G
Sbjct: 345  RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 404

Query: 859  NTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCV 1038
             T+ G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+
Sbjct: 405  CTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCI 464

Query: 1039 LGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKT 1218
             GK KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K 
Sbjct: 465  FGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKH 524

Query: 1219 KDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQ 1398
            KD+    F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQ
Sbjct: 525  KDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQ 584

Query: 1399 NGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK 1578
            NGVAERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG 
Sbjct: 585  NGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGM 644

Query: 1579 PVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1758
            P  DY  L+VFG  AY HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V 
Sbjct: 645  P-ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVV 703

Query: 1759 FDEHAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-E 1920
            F+E  M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  
Sbjct: 704  FNESVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAH 761

Query: 1921 EEVQTQEPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFR 2070
            ++VQ   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++
Sbjct: 762  DDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYK 821

Query: 2071 EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRY 2250
            EAVR  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +Y
Sbjct: 822  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKY 881

Query: 2251 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 2430
            KARLVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE
Sbjct: 882  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941

Query: 2431 EIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYL 2610
            +IYM QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY+
Sbjct: 942  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1001

Query: 2611 RKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRT 2790
            + + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR 
Sbjct: 1002 KHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1060

Query: 2791 SGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYAN 2970
            SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++
Sbjct: 1061 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSS 1119

Query: 2971 AVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGK 3150
            AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+  T    L F   G+
Sbjct: 1120 AVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GR 1176

Query: 3151 LGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEA 3330
              +G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA
Sbjct: 1177 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1236

Query: 3331 VKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEG 3510
             KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG
Sbjct: 1237 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1296

Query: 3511 NILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 3618
             + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1297 KLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1147 bits (2967), Expect = 0.0
 Identities = 603/1236 (48%), Positives = 803/1236 (64%), Gaps = 30/1236 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++  H+  F ++VADL++++V + DEDL L+LL SLP+ + +   T+L  +
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEAL-VAXXXXXXXXXXXXXXXXXXAKL- 354
            D+++L  V  AL + E            ++  EAL V                   +K  
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSK 224

Query: 355  ---DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLI 504
               +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  +
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCV 284

Query: 505  SRSDEWILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGST 681
            +  DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG T
Sbjct: 285  AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344

Query: 682  RVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQG 858
            R L +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G
Sbjct: 345  RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 404

Query: 859  NTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCV 1038
             T+ G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+
Sbjct: 405  CTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCI 464

Query: 1039 LGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKT 1218
             GK KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K 
Sbjct: 465  FGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKH 524

Query: 1219 KDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQ 1398
            KD+    F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQ
Sbjct: 525  KDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQ 584

Query: 1399 NGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK 1578
            NGVAERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG 
Sbjct: 585  NGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGT 644

Query: 1579 PVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1758
            P  DY  L+VFG  AY HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V 
Sbjct: 645  P-ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVV 703

Query: 1759 FDEHAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-E 1920
            F+E  M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  
Sbjct: 704  FNESVMFTNSLPSEHVPE--KELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAH 761

Query: 1921 EEVQTQEPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFR 2070
            ++VQ   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++
Sbjct: 762  DDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYK 821

Query: 2071 EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRY 2250
            EAVR  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +Y
Sbjct: 822  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKY 881

Query: 2251 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 2430
            KARLVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE
Sbjct: 882  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941

Query: 2431 EIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYL 2610
            +IYM QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY+
Sbjct: 942  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1001

Query: 2611 RKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRT 2790
            + + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKIL MEISRDR 
Sbjct: 1002 KHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRK 1060

Query: 2791 SGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYAN 2970
            SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++
Sbjct: 1061 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSS 1119

Query: 2971 AVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGK 3150
            AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+ V+WI RY+  T    L F   G+
Sbjct: 1120 AVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF---GR 1176

Query: 3151 LGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEA 3330
              +G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA
Sbjct: 1177 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1236

Query: 3331 VKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEG 3510
             KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG
Sbjct: 1237 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1296

Query: 3511 NILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 3618
             + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1297 KLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 1139 bits (2946), Expect = 0.0
 Identities = 601/1236 (48%), Positives = 800/1236 (64%), Gaps = 30/1236 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++  HI  F ++VADL++++V + DEDL L+LL SLP+ + +   T+L  +
Sbjct: 107  FTLKMKEEDSVITHIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 166

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEAL-VAXXXXXXXXXXXXXXXXXXAKL- 354
            D+++L  V  AL + E            ++  EAL V                   +K  
Sbjct: 167  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSK 226

Query: 355  ---DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLI 504
               +K  C +C  K H   +C K+     KNK  GK    +     +   +  +V +  +
Sbjct: 227  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCV 286

Query: 505  SRSDEWILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGST 681
            +  DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG T
Sbjct: 287  AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 346

Query: 682  RVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQG 858
            R L +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G
Sbjct: 347  RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 406

Query: 859  NTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCV 1038
             T+ G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+
Sbjct: 407  CTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCI 466

Query: 1039 LGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKT 1218
             GK KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K 
Sbjct: 467  FGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKH 526

Query: 1219 KDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQ 1398
            KD+    F  WK  IE QT RK+K+L TDNGGE+ S  F + C + GIVRH T+  TPQQ
Sbjct: 527  KDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQ 586

Query: 1399 NGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK 1578
            NGVAERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG 
Sbjct: 587  NGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGT 646

Query: 1579 PVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1758
            P  DY  L+VFG  AY HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V 
Sbjct: 647  P-ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVV 705

Query: 1759 FDEHAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-E 1920
            F+E  M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  
Sbjct: 706  FNESVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAH 763

Query: 1921 EEVQTQEPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFR 2070
            ++VQ   P+ Q E    IA R+ +R    P R     ++  YAL   +       P T++
Sbjct: 764  DDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYK 823

Query: 2071 EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRY 2250
            EAVR  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+        +Y
Sbjct: 824  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKY 883

Query: 2251 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 2430
            KARLVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE
Sbjct: 884  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 943

Query: 2431 EIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYL 2610
            +IYM QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY+
Sbjct: 944  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1003

Query: 2611 RKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRT 2790
            + + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR 
Sbjct: 1004 KHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1062

Query: 2791 SGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYAN 2970
            SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++
Sbjct: 1063 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSS 1121

Query: 2971 AVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGK 3150
            AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A++WI RY+  T    L F   G+
Sbjct: 1122 AVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKF---GR 1178

Query: 3151 LGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEA 3330
              +G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA
Sbjct: 1179 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1238

Query: 3331 VKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEG 3510
             KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG
Sbjct: 1239 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1298

Query: 3511 NILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 3618
             + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1299 KLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGLI 1334


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 1123 bits (2904), Expect = 0.0
 Identities = 595/1223 (48%), Positives = 791/1223 (64%), Gaps = 21/1223 (1%)
 Frame = +1

Query: 13   YRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVS 192
            + SG+ +N HI+ F ++VADL++++V F DEDL L+LL SLP  + +   T+L  +D+++
Sbjct: 114  HESGSVLN-HISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELT 172

Query: 193  LAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK-----LD 357
            LA V  AL + E            +  +   V                   ++       
Sbjct: 173  LAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRG 232

Query: 358  KDECAFCHEKGHWKKDCPKLKNKGKAPQDACV-----AEGESEDEFSLVVSPLISRSDEW 522
            K  C +C +K H+ ++C KL+NK K   D        AE     +  +V +  ++  DEW
Sbjct: 233  KKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEW 292

Query: 523  ILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 699
            ILD+ C++H+   ++WF +++ + N  VV MG+DN  +  GIGS+++K HDG TR L DV
Sbjct: 293  ILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352

Query: 700  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT 876
            R++P + +NLISL  L+++G   +   GV+K + GSLV M G +   NLY  +G+T+ G+
Sbjct: 353  RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412

Query: 877  AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 1056
               A    ++ S+   LWHMRLGH  E  +  L K+ LL       + FCEHCV GK KR
Sbjct: 413  VTAAAVTKDEPSKT-NLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKR 471

Query: 1057 VKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLG 1236
            VKF T++H T+GILDYVH+D+WGPS+ PSLGG  Y +T IDD+SR+ W Y +K KD+   
Sbjct: 472  VKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFA 531

Query: 1237 IFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAER 1416
             F + K  IE QT +++KVL TDNGGE+ SD F + C K GIVRH T+  TPQQNGVAER
Sbjct: 532  AFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAER 591

Query: 1417 MNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYD 1596
            MNRT++ K RCMLSNA + ++ WAEA   A +LINR PS  +  KTP+E+WSG P  DY 
Sbjct: 592  MNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP-ADYS 650

Query: 1597 SLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAM 1776
             LRVFG  AY HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR+V F+E  M
Sbjct: 651  QLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVM 710

Query: 1777 LKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPL--D 1950
                            E+    V+VE +       D+  TE + +D  + VQ    +   
Sbjct: 711  FNDSLPTDVIPGGSDEEQQYVSVQVEHV-------DDQETEIVGNDVNDTVQHSPSVLQP 763

Query: 1951 QSEPIAVRRPRREIHKPARF---ADMV----AYALPVIDDDVPFTFREAVRSPESEKWKG 2109
            Q EPIA RR +R    P R     DMV    +YA  V +   P T+ EAV S + EKW  
Sbjct: 764  QDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWIS 823

Query: 2110 AMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKE 2289
            A++EEMQSL+KN TW++  LPK KK + CKW+F +K+G       R+K RLVAKG++Q  
Sbjct: 824  AIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIA 883

Query: 2290 GIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVA 2469
            G+DYN+VFSPVVKHSSIR                DVKT FLHG+LEEEIYM QPEGF V 
Sbjct: 884  GVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVP 943

Query: 2470 GKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLL 2649
            GKE++VCKL +SLYGLKQSPRQWYKRFD FM+   + RS++D CVY+ K  +GS IYLLL
Sbjct: 944  GKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYI-KFVNGSPIYLLL 1002

Query: 2650 YVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLK 2829
            YVDDMLIA++S+ +I  LK QL+ EF+MKDLG AKKILGMEI+RDR SG L L+Q+ Y+K
Sbjct: 1003 YVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIK 1062

Query: 2830 KVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTR 3009
            KVLQRF M  + KPVSTP+APH KLSA      DE+ +YM +VPY++AVGSLMYAMVC+ 
Sbjct: 1063 KVLQRFNM-HDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSW 1121

Query: 3010 PDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDY 3189
            PD+S A+S+VSRYM +PGK HW+AV+WI RY+  T D  L F   G++ +G+VGY DSD+
Sbjct: 1122 PDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKF---GRIDKGLVGYVDSDF 1178

Query: 3190 AGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLED 3369
            A DLDKRRS TGY+FT+    VSWK+TLQ  VA STTEAEYMA++EA KE++WL+ L  +
Sbjct: 1179 AADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAE 1238

Query: 3370 LGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENP 3549
            L      I + CDSQSAI L K+Q+ H RTKHID++YH+VR+I+ +G + + KI   +NP
Sbjct: 1239 LCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNP 1298

Query: 3550 ADMLTKVVTSIKFKHCLDLINIL 3618
            ADM+TK +   KF+ C  L+ I+
Sbjct: 1299 ADMMTKPIPVAKFELCSSLVGIV 1321


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 1120 bits (2898), Expect = 0.0
 Identities = 590/1204 (49%), Positives = 784/1204 (65%), Gaps = 30/1204 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++  H+  F ++VADL++++V + DEDL L+LL SLP+ + +   T+L  +
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEAL-VAXXXXXXXXXXXXXXXXXXAKL- 354
            D+++L  V  AL + E            ++  EAL V                   +K  
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSK 224

Query: 355  ---DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLI 504
               +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  +
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCV 284

Query: 505  SRSDEWILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGST 681
            +  DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG T
Sbjct: 285  AGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMT 344

Query: 682  RVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQG 858
            R L +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G
Sbjct: 345  RTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRG 404

Query: 859  NTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCV 1038
             T+ G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+
Sbjct: 405  CTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCI 464

Query: 1039 LGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKT 1218
             GK KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K 
Sbjct: 465  FGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKH 524

Query: 1219 KDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQ 1398
            KD+    F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQ
Sbjct: 525  KDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQ 584

Query: 1399 NGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK 1578
            NGVAERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG 
Sbjct: 585  NGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGT 644

Query: 1579 PVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1758
            P  DY  L+VFG  AY HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V 
Sbjct: 645  P-ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVV 703

Query: 1759 FDEHAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-E 1920
            F+E  M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  
Sbjct: 704  FNESVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAH 761

Query: 1921 EEVQTQEPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFR 2070
            ++VQ   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++
Sbjct: 762  DDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYK 821

Query: 2071 EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRY 2250
            EAVR  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +Y
Sbjct: 822  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKY 881

Query: 2251 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 2430
            KARLVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE
Sbjct: 882  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941

Query: 2431 EIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYL 2610
            +IYM QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY+
Sbjct: 942  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1001

Query: 2611 RKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRT 2790
            + + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR 
Sbjct: 1002 KHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1060

Query: 2791 SGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYAN 2970
            SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++
Sbjct: 1061 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSS 1119

Query: 2971 AVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGK 3150
            AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+  T    L F   G+
Sbjct: 1120 AVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GR 1176

Query: 3151 LGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEA 3330
              +G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA
Sbjct: 1177 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1236

Query: 3331 VKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEG 3510
             KE IWL+ L  +L   +  I++HCDS+SAI+L K+Q+ H RTKHID++YHFVR+++EE 
Sbjct: 1237 CKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIEED 1296

Query: 3511 NILL 3522
            + L+
Sbjct: 1297 DWLI 1300


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 1086 bits (2809), Expect = 0.0
 Identities = 587/1224 (47%), Positives = 774/1224 (63%), Gaps = 28/1224 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  +   G  +NDHI  F   +A+L  +     DED A+MLL SLP  F+H +TT++  K
Sbjct: 82   FGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-K 140

Query: 181  DDVSLAVVCAALYSY---ELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK 351
            + ++L+ VC    SY   E                E   +                   K
Sbjct: 141  ELITLSKVCENPKSYIRLEREEDSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGK 200

Query: 352  LDKDECAFCHEKGHWKKDCPKLKNK-----GKAPQDACVAEG-ESEDEFSLVVSPLISRS 513
              KD C       HWK++C + K K     G++ Q A V  G   ED   L +S      
Sbjct: 201  GKKDGCFIYGSPDHWKRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAISTSSGAP 260

Query: 514  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 693
              W LD+ CT+H    ++WF  ++E N   V MGND+  +  GIG ++++ HDG  R L 
Sbjct: 261  RHWTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALG 320

Query: 694  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVI 870
            +VR+ P L +NLISL  ++  G     ++GVLK   G +V MKG I+ +N+Y   G+TV 
Sbjct: 321  NVRHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVE 380

Query: 871  GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQ 1050
            G A V       E +  +LW  RLGH  ++ LQ L K+  L  V    L+FC +C LGKQ
Sbjct: 381  GGAGVCT-----EEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQ 435

Query: 1051 KRVKFG--TAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKD 1224
             RV F   ++ + ++G+LDY+H+DVWGPS T S GG  YFV+FIDDFSR+VW++ MKTK+
Sbjct: 436  TRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKN 495

Query: 1225 EVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNG 1404
            EV   F +WK  + NQTGRKIK LR+DNGGEY    F ++C   GI RHFTV+++PQQNG
Sbjct: 496  EVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNG 555

Query: 1405 VAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPV 1584
            VAERMNRTL+EK R M  +AGL  + WAEA  +A +LINR PS AI  K   EVWSGKPV
Sbjct: 556  VAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPV 615

Query: 1585 TDYDSLRVFGSLAYYHV---KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDV 1755
             DY +LRVFG  AY H+   + +KLEP++   LF+G   GVKGY+LW + ++K + SRDV
Sbjct: 616  -DYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDV 674

Query: 1756 TFDEHAMLKTVTSEKT----DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEE 1923
             FDE   +    ++ +    ++ ++Q E+   +V +EE    P     P      +   +
Sbjct: 675  VFDEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEE----PEHQQQPTVMAQVEQSPQ 730

Query: 1924 EVQT----QEPLDQSEPIAVRRPRREIHKPARFA----DMVAYALPVIDDDVPFTFREAV 2079
              Q     Q P      IA+ +P+R      RF     + V+ AL +   D P T+ +A+
Sbjct: 731  RGQNSPIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGD-PTTYEDAI 789

Query: 2080 RSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKAR 2259
             S ES  W GAM EEM+SL KN  W++   PK +K +GCKWVF KK+G    + + YKAR
Sbjct: 790  ESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKAR 849

Query: 2260 LVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIY 2439
            LVAKGY+QKEG+DY+E+FSPVVKH+SIR+               DVKTAFLHGDLEE+IY
Sbjct: 850  LVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIY 909

Query: 2440 MTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKL 2619
            M+QPEGF   GKEN VC+L KSLYGLKQSPRQWYK FD +M+   YTR +YD CVY    
Sbjct: 910  MSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVF 969

Query: 2620 QDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGK 2799
            +DG  I LLLYVDDMLIA +  L+I KLK +L  EF+MKDLG A+KILG+EI RDR +GK
Sbjct: 970  EDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGK 1029

Query: 2800 LCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVG 2979
            + L+Q++Y+ K+L+RF M E  K VS PLA H +LSA+  P + +E D M  VPYA+AVG
Sbjct: 1030 IWLSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVG 1088

Query: 2980 SLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQ 3159
             LMYAM+CTRPD++QA+SVVS+YM +PGK HW+AVKWI +Y+ NT  +G++FE+  + G+
Sbjct: 1089 CLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER--RQGE 1146

Query: 3160 G-IVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVK 3336
              + G+ DSD+AGDLD+RRST GY+FT    PVSWK+TLQ+  ALSTTEAEYMA++EA K
Sbjct: 1147 ACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASK 1206

Query: 3337 EAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNI 3516
            EAIWL  L   LGV Q+ + V CDSQSAIHLAKNQV HARTKHID RYH +R+ +E G I
Sbjct: 1207 EAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVI 1266

Query: 3517 LLEKIHTTENPADMLTKVVTSIKF 3588
            ++EK+HT +N AD LTK V+  K+
Sbjct: 1267 IVEKVHTDDNAADFLTKPVSVEKY 1290


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 1083 bits (2802), Expect = 0.0
 Identities = 578/1234 (46%), Positives = 787/1234 (63%), Gaps = 28/1234 (2%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLD-VTFSDEDLALMLLSSLPDEFEHLETTLLHG 177
            + F  R G T+ DHI  FN+++ DL  ++ V   DED A  LLSSLP  +E    T+L+G
Sbjct: 110  YTFSMREGVTIQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYG 169

Query: 178  KDDVSLAVVCAALYSYELXXXXXXXXXX---IAADDEALVAXXXXXXXXXXXXXXXXXXA 348
            +  ++L  V A+L S E+             + A  E                       
Sbjct: 170  RTTLTLEDVKASLSSKEIQKNCELETSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADK 229

Query: 349  KLDKDECAFCHEKGHWKKDCPKLKNKGKAPQ--DACVAEGESEDEFS---LVVSPLISRS 513
            K  K +C +C ++GH+ +DC + K K    +  DA VA  +  D +    L+V+   +  
Sbjct: 230  KKKKRKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTK 289

Query: 514  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSI-RLKNHDGSTRVL 690
             +W++DSGC++H+ P K  F+ +E ++GG V MGN+N C   GI    R +      R L
Sbjct: 290  GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSL 349

Query: 691  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVI 870
             +VR+ P LK+NLISLG L+S G     R G L+   G+ +VMKG+  N LY  QG++V 
Sbjct: 350  HEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVP 409

Query: 871  ---GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVL 1041
               G +AV+      E +  KLWH+RLGH   K LQ L+KQGLL   ++ +L+FCE+C+ 
Sbjct: 410  VQEGVSAVS------EEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIF 463

Query: 1042 GKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTK 1221
            GK  R KF    H ++ +LDY H D WGP++ PSL G  YF++ IDD+SR+VW+Y +K K
Sbjct: 464  GKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIK 523

Query: 1222 DEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQN 1401
            D+ L  F  WK+ +ENQ+  K+K LRTDNG E+ S  F+E C K+GI RH TVR TPQQN
Sbjct: 524  DQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQN 583

Query: 1402 GVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKP 1581
            G+AERMNRTLV+K RCML N+ L R  WAEAV  A +L+NR PSSAIG KTP E+W+GKP
Sbjct: 584  GLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKP 643

Query: 1582 VTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTF 1761
              +Y +LRVFG  AY H+ + KLE RA + +F+G   GVKGY++WC +  K + SRDV F
Sbjct: 644  A-NYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVF 702

Query: 1762 DEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAI-IPAKNDNPVTEDLSDDDEEEVQTQ 1938
             E  +LK   S + D+ LQ      K+   E   + +    D    ++ + DDE      
Sbjct: 703  HESVLLKE--SAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAES 760

Query: 1939 EPLDQSE---------PIAVRRPRREIHKPARF--ADMVAYALPVIDD---DVPFTFREA 2076
            E  + SE          +A  R RRE+  P R+  AD++AYAL   D+   + P  F EA
Sbjct: 761  EEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEA 820

Query: 2077 VRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKA 2256
            + S   +KW  AM++EM+SLQ+N+TW +   P  K+ I CKW+F + +G P+    +YKA
Sbjct: 821  MESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKA 880

Query: 2257 RLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEI 2436
            RLVA+G+ Q+EG+D+NE+FSPVVKHSSIRI               DVKTAFLHG+LEE+I
Sbjct: 881  RLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQI 940

Query: 2437 YMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRK 2616
             M QPEGF+   KE++VC L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVY   
Sbjct: 941  LMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGG 1000

Query: 2617 LQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSG 2796
               G   YLLLYVDDMLIAS+ + EI++LK  L  EFEMKDLG AK+ILGM+I RDR++G
Sbjct: 1001 SDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAG 1060

Query: 2797 KLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAV 2976
             L L+Q +Y+KKVL+RF M ++ KPV TPL P  KLSA  +    E+   M++ PYA AV
Sbjct: 1061 TLFLSQGKYIKKVLERFEM-QDCKPVQTPLGPQFKLSAATT---SEDESQMNEFPYAQAV 1116

Query: 2977 GSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLG 3156
            GSLMYAMVCTR DI+ AVSVVSRY+  PGK HW AVKWI+RY+  +   GL++ +     
Sbjct: 1117 GSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDK 1176

Query: 3157 QGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVK 3336
              ++G+ DSD+AGDLD+R+ST+ Y+F L    +SWKS+LQS  ALS+TEAE++A +EAVK
Sbjct: 1177 IEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVK 1236

Query: 3337 EAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNI 3516
            EA+WL+ LL +L + QK + V CD+Q+AIHL KNQ+ H RTKHIDV+  F+R+ + +G +
Sbjct: 1237 EAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTV 1296

Query: 3517 LLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 3618
            ++ KIHT+ NPAD LTK + + KF+ C++L+ I+
Sbjct: 1297 VVSKIHTSVNPADALTKSLPTAKFEFCVNLMGIM 1330


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1069 bits (2764), Expect = 0.0
 Identities = 581/1226 (47%), Positives = 780/1226 (63%), Gaps = 28/1226 (2%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T++ DHI   N L + L   D   ++ + A +LL SLPD ++ L   + +    D +   
Sbjct: 111  TSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFD 170

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDE---C 369
             V  A+   E            +   EAL                    +K  + +   C
Sbjct: 171  DVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKC 230

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS-------DE 519
              C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       D 
Sbjct: 231  YGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDV 290

Query: 520  WILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 699
            WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R +  V
Sbjct: 291  WIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGV 350

Query: 700  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVI-G 873
            R+V  LKKNL+S+G L+  G  +    G+LK   G+LVVMK  +  +NLY   G+T+   
Sbjct: 351  RHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEA 410

Query: 874  TAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQK 1053
             A+VA +  E   E   +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ KQ 
Sbjct: 411  DASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQH 467

Query: 1054 RVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVL 1233
            R+KF      ++ ILD +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +V 
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVF 526

Query: 1234 GIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAE 1413
             +F  +K +IE +TG+KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAE
Sbjct: 527  PVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAE 586

Query: 1414 RMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDY 1593
            RMNRTL+E+ R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY
Sbjct: 587  RMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DY 645

Query: 1594 DSLRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFD 1764
             SL VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F 
Sbjct: 646  SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705

Query: 1765 EHAMLKTVTSEKT--DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1938
            E+ +     ++ T  ++A+ Q+E   K+ +  E          PV E+   DD       
Sbjct: 706  ENELQSKQKNDSTSKETAIVQMEEKSKESDSSEA--------EPVHEEQEPDDVNN---- 753

Query: 1939 EPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 2103
                      VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W
Sbjct: 754  ---------GVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQW 803

Query: 2104 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYA 2280
              AM EEM++L +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYA
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYA 861

Query: 2281 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2460
            QKEGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 862  QKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGF 921

Query: 2461 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIY 2640
            K  GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y+R   DHC Y ++     FI 
Sbjct: 922  KEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFII 981

Query: 2641 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2820
            LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK 
Sbjct: 982  LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKN 1041

Query: 2821 YLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 3000
            YL+KVL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+
Sbjct: 1042 YLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMI 1100

Query: 3001 CTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3180
            CTRPDI+QAV VVSR+M DPGK HW AVK I+RYI  T  V + F   G     + GY D
Sbjct: 1101 CTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVD 1157

Query: 3181 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3360
            SD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3361 LEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3540
            +E+LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 3541 ENPADMLTKVVTSIKFKHCLDLINIL 3618
            +N AD +TK + + KF  C  L  +L
Sbjct: 1278 DNLADAMTKSINTDKFIWCRSLYGLL 1303


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1068 bits (2761), Expect = 0.0
 Identities = 582/1224 (47%), Positives = 785/1224 (64%), Gaps = 26/1224 (2%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T++ DHI   N L + L   D   ++ + A +LL SLPD ++ L   + +    D +   
Sbjct: 111  TSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFD 170

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDE---C 369
             V  A+   E            +   EAL                    +K  + +   C
Sbjct: 171  DVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKC 230

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS-------DE 519
              C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       D 
Sbjct: 231  YGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDV 290

Query: 520  WILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 699
            WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R +  V
Sbjct: 291  WIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGV 350

Query: 700  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVI-G 873
            R+V  LKKNL+S+G L+  G  +    G+LK   G+LVVMK  +  +NLY   G+T+   
Sbjct: 351  RHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEA 410

Query: 874  TAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQK 1053
             A+VA S  E   E   +WH RLGH  E+ L+ LA++ LL  +K   L FCEHCV+ KQ 
Sbjct: 411  DASVAASSQE---ETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQH 467

Query: 1054 RVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVL 1233
            R+KF      ++ ILD +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +V 
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVF 526

Query: 1234 GIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAE 1413
             +F  +K +IE +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAE
Sbjct: 527  PVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAE 586

Query: 1414 RMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDY 1593
            RMNRTL+E+ R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY
Sbjct: 587  RMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DY 645

Query: 1594 DSLRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFD 1764
             SL VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F 
Sbjct: 646  SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705

Query: 1765 EHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEP 1944
            E+ +    + +K DS       T K+  + +M     ++D+   E + ++       QEP
Sbjct: 706  ENELQ---SEQKNDS-------TSKETAIVQMEEKSKESDSSEAESVHEE-------QEP 748

Query: 1945 LDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKG 2109
             D ++   VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W  
Sbjct: 749  DDVND--GVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQWMT 805

Query: 2110 AMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQK 2286
            AM EEM++L +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQK
Sbjct: 806  AMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQK 863

Query: 2287 EGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKV 2466
            EGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGFK 
Sbjct: 864  EGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKE 923

Query: 2467 AGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLL 2646
             GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y+R   DHC Y ++     FI LL
Sbjct: 924  QGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILL 983

Query: 2647 LYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYL 2826
            LYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL
Sbjct: 984  LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYL 1043

Query: 2827 KKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCT 3006
            +KVL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CT
Sbjct: 1044 RKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT 1102

Query: 3007 RPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSD 3186
            RPDI+QAV VVSR+M DPGK HW AVK I+RYI  T  V + F   G     + GY DSD
Sbjct: 1103 RPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSD 1159

Query: 3187 YAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLE 3366
            +AGD DKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLME 1219

Query: 3367 DLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTEN 3546
            +LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N
Sbjct: 1220 ELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDN 1279

Query: 3547 PADMLTKVVTSIKFKHCLDLINIL 3618
             AD++TK + + KF  C     +L
Sbjct: 1280 LADVMTKPINADKFVWCRSSYGLL 1303


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score = 1065 bits (2753), Expect = 0.0
 Identities = 580/1222 (47%), Positives = 781/1222 (63%), Gaps = 24/1222 (1%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T + DHI   N L A L   D    + + A +LL SLPD ++ L   + +      +S  
Sbjct: 62   TAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSFE 121

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK---LDKDEC 369
             V  A+   E            +   EAL                    +K       +C
Sbjct: 122  DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKC 181

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRSDE------W 522
              C  +GH KKDC   K+ G    +A  ++G    ++++  ++ S  IS   E      W
Sbjct: 182  YNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYSEAISSRGEKQLHECW 241

Query: 523  ILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 702
            ILDSG T+HM+P ++WF  +E I+GG V+MGND+A +  G+G+I+LK +DG+ R +  VR
Sbjct: 242  ILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVR 301

Query: 703  YVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVIGTA 879
            +V  LKKNL+S+G L+     + +  G+LK   G+LVVMK  +  +NLY   G T+    
Sbjct: 302  HVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETL--QE 359

Query: 880  AVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRV 1059
            A A      + EA  +WH RLGH  E+ L+ LA++ LL  +K+  L FCEHCV  KQ R+
Sbjct: 360  ADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRL 419

Query: 1060 KFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGI 1239
            +F      ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K +V  +
Sbjct: 420  QFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPV 478

Query: 1240 FLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERM 1419
            F ++K ++E  TG++IK LRTDNGGEY    F   C + GI R FTV  TPQQNGVAERM
Sbjct: 479  FKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERM 538

Query: 1420 NRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDS 1599
            NRTL+E+ R ML  AGL +  WAEAV  A +LINR PS+AIG KTP+E+W+GKP ++Y S
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKP-SNYSS 597

Query: 1600 LRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            L VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E 
Sbjct: 598  LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD 1950
             + K           Q+ + T K   + E+     K+D       + + E+E + QEP D
Sbjct: 658  ELQKE----------QENDSTIKDTSIVEIGGKSKKDD-------TSEAEQEHEEQEP-D 699

Query: 1951 QSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAM 2115
            ++    V++ RRE  +P+  +D V     AY L + ++  P TF+EA+RS +  +W  AM
Sbjct: 700  EANDEEVQQIRRERRRPSWHSDYVMASHDAYCL-LTEEGEPSTFQEALRSSDVSQWMAAM 758

Query: 2116 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKGYAQKEG 2292
             EE+++L +NKTW++  LPKG+KAIGCKWV+  K+DG  N    RY+ARLV KGYAQKEG
Sbjct: 759  HEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEG 816

Query: 2293 IDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAG 2472
            ID+NE+FSPVV+ ++IR+               DVKTAFLHG+L+EEIYM QPEGFK  G
Sbjct: 817  IDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQG 876

Query: 2473 KENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLY 2652
            KEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y  +  D  FI LLLY
Sbjct: 877  KENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLY 936

Query: 2653 VDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKK 2832
            VDDML+   ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL K
Sbjct: 937  VDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLK 996

Query: 2833 VLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRP 3012
            VL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRP
Sbjct: 997  VLRRFNM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRP 1055

Query: 3013 DISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYA 3192
            DI+QAV  VSR+M DPG+ HW  VK ILRYI  T DV L FE        + GY DSD+A
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFA 1112

Query: 3193 GDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDL 3372
            GDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+L
Sbjct: 1113 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1172

Query: 3373 GVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPA 3552
            G  Q+ ITV+CDSQSA+H+A+N   H+RTKHI ++YHFVRE++EEG + ++KIHT +N A
Sbjct: 1173 GHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIA 1232

Query: 3553 DMLTKVVTSIKFKHCLDLINIL 3618
            D++TK V + KF  C  L  +L
Sbjct: 1233 DVMTKPVNTDKFTWCRSLFGLL 1254


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score = 1065 bits (2753), Expect = 0.0
 Identities = 580/1222 (47%), Positives = 781/1222 (63%), Gaps = 24/1222 (1%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T + DHI   N L A L   D    + + A +LL SLPD ++ L   + +      +S  
Sbjct: 111  TAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSFE 170

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK---LDKDEC 369
             V  A+   E            +   EAL                    +K       +C
Sbjct: 171  DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKC 230

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRSDE------W 522
              C  +GH KKDC   K+ G    +A  ++G    ++++  ++ S  IS   E      W
Sbjct: 231  YNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYSEAISSRGEKQLHECW 290

Query: 523  ILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 702
            ILDSG T+HM+P ++WF  +E I+GG V+MGND+A +  G+G+I+LK +DG+ R +  VR
Sbjct: 291  ILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVR 350

Query: 703  YVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVIGTA 879
            +V  LKKNL+S+G L+     + +  G+LK   G+LVVMK  +  +NLY   G T+    
Sbjct: 351  HVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETL--QE 408

Query: 880  AVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRV 1059
            A A      + EA  +WH RLGH  E+ L+ LA++ LL  +K+  L FCEHCV  KQ R+
Sbjct: 409  ADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRL 468

Query: 1060 KFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGI 1239
            +F      ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K +V  +
Sbjct: 469  QFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPV 527

Query: 1240 FLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERM 1419
            F ++K ++E  TG++IK LRTDNGGEY    F   C + GI R FTV  TPQQNGVAERM
Sbjct: 528  FKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERM 587

Query: 1420 NRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDS 1599
            NRTL+E+ R ML  AGL +  WAEAV  A +LINR PS+AIG KTP+E+W+GKP ++Y S
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKP-SNYSS 646

Query: 1600 LRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            L VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E 
Sbjct: 647  LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 706

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD 1950
             + K           Q+ + T K   + E+     K+D       + + E+E + QEP D
Sbjct: 707  ELQKE----------QENDSTIKDTSIVEIGGKSKKDD-------TSEAEQEHEEQEP-D 748

Query: 1951 QSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAM 2115
            ++    V++ RRE  +P+  +D V     AY L + ++  P TF+EA+RS +  +W  AM
Sbjct: 749  EANDEEVQQIRRERRRPSWHSDYVMASHDAYCL-LTEEGEPSTFQEALRSSDVSQWMAAM 807

Query: 2116 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKGYAQKEG 2292
             EE+++L +NKTW++  LPKG+KAIGCKWV+  K+DG  N    RY+ARLV KGYAQKEG
Sbjct: 808  HEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEG 865

Query: 2293 IDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAG 2472
            ID+NE+FSPVV+ ++IR+               DVKTAFLHG+L+EEIYM QPEGFK  G
Sbjct: 866  IDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQG 925

Query: 2473 KENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLY 2652
            KEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y  +  D  FI LLLY
Sbjct: 926  KENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLY 985

Query: 2653 VDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKK 2832
            VDDML+   ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL K
Sbjct: 986  VDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLK 1045

Query: 2833 VLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRP 3012
            VL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRP
Sbjct: 1046 VLRRFNM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRP 1104

Query: 3013 DISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYA 3192
            DI+QAV  VSR+M DPG+ HW  VK ILRYI  T DV L FE        + GY DSD+A
Sbjct: 1105 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFA 1161

Query: 3193 GDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDL 3372
            GDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+L
Sbjct: 1162 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1221

Query: 3373 GVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPA 3552
            G  Q+ ITV+CDSQSA+H+A+N   H+RTKHI ++YHFVRE++EEG + ++KIHT +N A
Sbjct: 1222 GHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIA 1281

Query: 3553 DMLTKVVTSIKFKHCLDLINIL 3618
            D++TK V + KF  C  L  +L
Sbjct: 1282 DVMTKPVNTDKFTWCRSLFGLL 1303


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 581/1222 (47%), Positives = 781/1222 (63%), Gaps = 24/1222 (1%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T + DHI   N L A L   D    + + A +LL SLPD ++ L   + +      +S  
Sbjct: 111  TAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSFE 170

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK---LDKDEC 369
             V  A+   E            +   EAL                    +K       +C
Sbjct: 171  DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKC 230

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRSDE------W 522
              C  +GH KKDC   K+ G    +A  ++G    ++++  ++ S  IS   E      W
Sbjct: 231  YNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYSEAISSRGEKQLHECW 290

Query: 523  ILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 702
            ILDSG T+HM+P ++WF  +E I+GG V+MGND+A +  G+G+I+LK +DG+ R +  VR
Sbjct: 291  ILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVR 350

Query: 703  YVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVIGTA 879
            +V  LKKNL+S+G L+     + +  G+LK   G+LVVMK  +  +NLY   G T+    
Sbjct: 351  HVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETL--QE 408

Query: 880  AVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRV 1059
            A A      + EA  +WH RLGH  E+ L+ LA++ LL  +K+  L FCEHCV  KQ R+
Sbjct: 409  ADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRL 468

Query: 1060 KFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGI 1239
            +F      ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K +V  +
Sbjct: 469  QFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPV 527

Query: 1240 FLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERM 1419
            F ++K ++E  TG++IK LRTDNGGEY    F   C + GI R FTV  TPQQNGVAERM
Sbjct: 528  FKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERM 587

Query: 1420 NRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDS 1599
            NRTL+E+ R ML  AGL +  WAEAV  A +LINR PS+AIG KTP+E+WSGKP ++Y S
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKP-SNYSS 646

Query: 1600 LRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            L VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E 
Sbjct: 647  LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 706

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD 1950
             + K           Q+ + T K   + E+     K+D       + + E+E + QEP D
Sbjct: 707  ELQKE----------QENDSTIKDTSIVEIGGKSKKDD-------TSEAEQEHEEQEP-D 748

Query: 1951 QSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAM 2115
            ++    V++ RRE  +P+  +D V     AY L + ++  P TF+EA+RS +  +W  AM
Sbjct: 749  EANDEEVQQIRRERRRPSWHSDYVMASHDAYCL-LTEEGEPSTFQEALRSSDVSQWMAAM 807

Query: 2116 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKGYAQKEG 2292
             EE+++L +NKTW++  LPKG+KAIGCKWV+  K+DG  N    RY+ARLV KGYAQK G
Sbjct: 808  HEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKAG 865

Query: 2293 IDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAG 2472
            ID+NE+FSPVV+ ++IR+               DVKTAFLHG+L+EEIYM QPEGFK  G
Sbjct: 866  IDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQG 925

Query: 2473 KENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLY 2652
            KEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y  +  D  FI LLLY
Sbjct: 926  KENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLY 985

Query: 2653 VDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKK 2832
            VDDML+   ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL K
Sbjct: 986  VDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLK 1045

Query: 2833 VLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRP 3012
            VL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRP
Sbjct: 1046 VLRRFNM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRP 1104

Query: 3013 DISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYA 3192
            DI+QAV  VSR+M DPG+ HW  VK ILRYI  T DV L FE    +   + GY DSD+A
Sbjct: 1105 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFV---VRGYVDSDFA 1161

Query: 3193 GDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDL 3372
            GDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+L
Sbjct: 1162 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1221

Query: 3373 GVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPA 3552
            G  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG + ++KIHT +N A
Sbjct: 1222 GHKQEKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGKVDMQKIHTKDNIA 1281

Query: 3553 DMLTKVVTSIKFKHCLDLINIL 3618
            D++TK V + KF  C  L  +L
Sbjct: 1282 DVMTKPVNTDKFTWCRSLFGLL 1303


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 580/1222 (47%), Positives = 780/1222 (63%), Gaps = 24/1222 (1%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T + DHI   N L A L   D    + + A +LL SLPD ++ L   + +      +S  
Sbjct: 62   TAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSFE 121

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK---LDKDEC 369
             V  A+   E            +   EAL                    +K       +C
Sbjct: 122  DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKC 181

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRSDE------W 522
              C  +GH KKDC   K+ G    +A  ++G    ++++  ++ S  IS   E      W
Sbjct: 182  YNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYSEAISSRGEKQLHECW 241

Query: 523  ILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 702
            ILDSG T+HM+P ++WF  +E I+GG V+MGND+A +  G+G+I+LK +DG+ R +  VR
Sbjct: 242  ILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVR 301

Query: 703  YVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVIGTA 879
            +V  LKKNL+S+G L+     + +  G+LK   G+LVVMK  +  +NLY   G T+    
Sbjct: 302  HVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETL--QE 359

Query: 880  AVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRV 1059
            A A      + EA  +WH RLGH  E+ L+ LA++ LL  +K+  L FCEHCV  KQ R+
Sbjct: 360  ADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRL 419

Query: 1060 KFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGI 1239
            +F      ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K +V  +
Sbjct: 420  QFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPV 478

Query: 1240 FLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERM 1419
            F ++K ++E  TG++IK LRTDNGGEY    F   C + GI R FTV  TPQQNGVAERM
Sbjct: 479  FKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERM 538

Query: 1420 NRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDS 1599
            NRTL+E+ R ML  AGL +  WAEAV  A +LINR PS+AIG KTP+E+WSGKP ++Y S
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKP-SNYSS 597

Query: 1600 LRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            L VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E 
Sbjct: 598  LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD 1950
             + K           Q+ + T K   + E+     K+D       + + E+E + QEP D
Sbjct: 658  ELQKE----------QENDSTIKDTSIVEIGGKSKKDD-------TSEAEQEHEEQEP-D 699

Query: 1951 QSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAM 2115
            ++    V++ RRE  +P+  +D V     AY L + ++  P TF+EA+RS +  +W  AM
Sbjct: 700  EANDEEVQQIRRERRRPSWHSDYVMASHDAYCL-LTEEGEPSTFQEALRSSDVSQWMAAM 758

Query: 2116 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKGYAQKEG 2292
             EE+++L +NKTW++  LPKG+KAIGCKWV+  K+DG  N    RY+ARLV KGYAQKEG
Sbjct: 759  HEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEG 816

Query: 2293 IDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAG 2472
            ID+NE+FSPVV+ ++IR+               DVKTAFLHG+L+EEIYM QPEGFK  G
Sbjct: 817  IDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQG 876

Query: 2473 KENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLY 2652
            KEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y  +  D  FI LLLY
Sbjct: 877  KENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLY 936

Query: 2653 VDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKK 2832
            VDDML+   ++ +I +LKAQL +EF+MKDLG A KILGM+I RD+   K+ L+Q+ YL K
Sbjct: 937  VDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDKKDRKIWLSQRNYLLK 996

Query: 2833 VLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRP 3012
            VL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRP
Sbjct: 997  VLRRFNM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRP 1055

Query: 3013 DISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYA 3192
            DI+QAV  VSR+M DPG+ HW  VK ILRYI  T DV L FE        + GY DSD+A
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFA 1112

Query: 3193 GDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDL 3372
            GDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+L
Sbjct: 1113 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1172

Query: 3373 GVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPA 3552
            G  Q+ ITV+CDSQSA+H+A+N   H+RTKHI ++YHFVRE++EEG + ++KIHT +N A
Sbjct: 1173 GHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIA 1232

Query: 3553 DMLTKVVTSIKFKHCLDLINIL 3618
            D++TK V + KF  C  L  +L
Sbjct: 1233 DVMTKPVNTDKFTWCRSLFGLL 1254


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 575/1166 (49%), Positives = 764/1166 (65%), Gaps = 20/1166 (1%)
 Frame = +1

Query: 1    FRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK 180
            F  + +   ++ DH++AF ++VADL +++V + ++DL L+LL SLP  + +   T+L+ +
Sbjct: 107  FLHKLQDDESVMDHLSAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSR 166

Query: 181  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDK 360
            D ++L  V  A ++ E            +  +  +V                   +   +
Sbjct: 167  DTLTLKEVYDAFHAKEKMKKMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGR 226

Query: 361  DE-------CAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGESEDEF-SLVVSPLISRSD 516
             +       C +C   GH   +C KL++K K      + +G+ E+E  + VV+   S ++
Sbjct: 227  TKSRGRYKSCKYCKRDGHDISECWKLQDKDKRT-GKYIPKGKKEEEGKAAVVTDEKSDAE 285

Query: 517  EWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTD 696
              +  +GC    +  ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R L+D
Sbjct: 286  LLVAYAGCA--QTSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSD 343

Query: 697  VRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMK-GIRRNNLYYYQGNTVIG 873
            V+++PNLK++LISL              G+LK T GSLVVMK  I+  NLY+ +G T++G
Sbjct: 344  VQHIPNLKRSLISLY-------------GILKVTKGSLVVMKVDIKSANLYHLRGTTILG 390

Query: 874  T-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQ 1050
              AAV DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK 
Sbjct: 391  NVAAVFDSLSN--SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKH 448

Query: 1051 KRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEV 1230
            KRVKF T+ H TEGILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K + 
Sbjct: 449  KRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQA 508

Query: 1231 LGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVA 1410
               F +WKT +E QT RK+K+LRTDNG E+ S  F+  C   GIV H+T   TPQQN VA
Sbjct: 509  FDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVA 568

Query: 1411 ERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTD 1590
            ERMNRT++ K RCMLSNAGL +Q WAEAV+ A +LINR P  AI  KTP+EVWSG P T+
Sbjct: 569  ERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSP-TN 627

Query: 1591 YDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            Y  LRVFG  AY HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E 
Sbjct: 628  YSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHES 687

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVE-VEEMAIIPAKNDNPVTED--LSDDDEEEVQTQE 1941
             +L    S  T+  ++  E+   QVE +      P K D  + +D  + +D +  +  Q 
Sbjct: 688  VILHDKPS--TNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQS 745

Query: 1942 PLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVID----DDVPFTFREAVRSPESEK 2100
            P      IA  +P+R I  P R+   A +VAYAL V +    +  P T+ EA+ S +  +
Sbjct: 746  P---KRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNR 802

Query: 2101 WKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYA 2280
            W  AM +EM+SL+KN TW++ +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+
Sbjct: 803  WITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYS 862

Query: 2281 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2460
            Q  GID+N+VFSPVVKHSSIR                +VKTAFLHG+LEE+IYM QPEGF
Sbjct: 863  QIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGF 922

Query: 2461 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIY 2640
             V GKEN VC+L KSLYGLKQSPRQWYKRFD FM+ QK+  S YD CVYL K+ DGS IY
Sbjct: 923  VVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYL-KVVDGSVIY 981

Query: 2641 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2820
            LLLYVDDMLIA++ + EI+KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+QK 
Sbjct: 982  LLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKG 1041

Query: 2821 YLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 3000
            Y++KVL+RF M  + KPVSTPLA H +LS+ L P +D + +YM +VPY++AVGSLMYAMV
Sbjct: 1042 YIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMV 1100

Query: 3001 CTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3180
            C RPD+S A+SVV+RYM +PGK HW+AV+WI RY+  T    L FE+      G+VGY D
Sbjct: 1101 CCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERS---RDGLVGYVD 1157

Query: 3181 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3360
            SD+AGDLD+RRS TGY+FT+    VSWK++LQ+TVALSTTEAEYMA+ EA KEAIWL+ L
Sbjct: 1158 SDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKEAIWLRGL 1217

Query: 3361 LEDLGVGQKHITVHCDSQSAIHLAKN 3438
              +L      I + CDSQSAI+L K+
Sbjct: 1218 YTELCGVTSCINIFCDSQSAIYLTKD 1243


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score = 1063 bits (2750), Expect = 0.0
 Identities = 580/1222 (47%), Positives = 778/1222 (63%), Gaps = 24/1222 (1%)
 Frame = +1

Query: 25   TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLA 198
            T + DHI   N L A L   D    + + A +LL SLPD ++ L   + +      +S  
Sbjct: 62   TAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSFE 121

Query: 199  VVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK---LDKDEC 369
             V  A+   E            +   EAL                    +K       +C
Sbjct: 122  DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKC 181

Query: 370  AFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRSDE------W 522
              C  +GH KKDC   K+ G    +A  ++G    ++++  ++ S  IS   E      W
Sbjct: 182  YNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYSEAISSRGEKQLHECW 241

Query: 523  ILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 702
            ILDSG T+HM+P ++WF  +E I+GG V+MGND+A +  G+G+I+LK +DG+ R +  VR
Sbjct: 242  ILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVR 301

Query: 703  YVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVMKGIR-RNNLYYYQGNTVIGTA 879
            +V  LKKNL+S+G L+     + +  G+LK   G+LVVMK  +  +NLY   G T+    
Sbjct: 302  HVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETL--QE 359

Query: 880  AVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRV 1059
            A A      + EA  +WH RLGH  E+ L+ LA++ LL  +K+  L FCEHCV  KQ R+
Sbjct: 360  ADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRL 419

Query: 1060 KFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGI 1239
            +F      ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K +V  +
Sbjct: 420  QFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPV 478

Query: 1240 FLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERM 1419
            F ++K ++E  TG++IK LRTDNGGEY    F   C + GI R FTV  TPQQNGVAERM
Sbjct: 479  FKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERM 538

Query: 1420 NRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDS 1599
            NRTL+E+ R ML  AGL +  WAEAV  A +LINR PS+AIG KTP+E+W+GKP ++Y S
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKP-SNYSS 597

Query: 1600 LRVFGSLAY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEH 1770
            L VFG   Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E 
Sbjct: 598  LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657

Query: 1771 AMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD 1950
             + K           Q+ + T K   + E+            ED + + E+E   QEP +
Sbjct: 658  ELQKE----------QENDSTIKDTSIVEIG-------GKSKEDDTSEAEQEHDEQEPNE 700

Query: 1951 QSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAM 2115
             ++   VRR  R+  KP+  +D V     AY L + ++  P TF+EA+RS +  +W  AM
Sbjct: 701  DNDG-DVRRTTRQTKKPSWHSDYVMASHDAYCL-LTEEGEPSTFQEALRSSDVSQWMAAM 758

Query: 2116 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKGYAQKEG 2292
             EE+++L +NKTW++  LPKG+KAIGCKWV+  K+DG  N    RY+ARLV KGYAQKEG
Sbjct: 759  HEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEG 816

Query: 2293 IDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAG 2472
            ID+NE+FSPVV+ ++IR+               DVKTAFLHG+L+EEIYM QPEGFK  G
Sbjct: 817  IDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQG 876

Query: 2473 KENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDGSFIYLLLY 2652
            KEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y  +  D  FI LLLY
Sbjct: 877  KENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLY 936

Query: 2653 VDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKK 2832
            VDDML+   ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL K
Sbjct: 937  VDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLK 996

Query: 2833 VLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRP 3012
            VL+RF M ++ KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRP
Sbjct: 997  VLRRFNM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRP 1055

Query: 3013 DISQAVSVVSRYMHDPGKGHWQAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYA 3192
            DI+QAV  VSR+M DPG+ HW  VK ILRYI  T DV L FE        + GY DSD+A
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFA 1112

Query: 3193 GDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDL 3372
            GDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+L
Sbjct: 1113 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1172

Query: 3373 GVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPA 3552
            G  Q+ ITV+CDSQSA+H+A+N   H+RTKHI ++YHFVRE++EEG + ++KIHT +N A
Sbjct: 1173 GHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIA 1232

Query: 3553 DMLTKVVTSIKFKHCLDLINIL 3618
            D++TK V + KF  C  L  +L
Sbjct: 1233 DVMTKPVNTDKFTWCRSLFGLL 1254