BLASTX nr result
ID: Rehmannia28_contig00011397
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00011397
(4823 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV su... 2137 0.0
ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV su... 2030 0.0
gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythra... 1911 0.0
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise... 1722 0.0
emb|CDP09818.1| unnamed protein product [Coffea canephora] 1531 0.0
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su... 1499 0.0
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su... 1497 0.0
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 1478 0.0
ref|XP_015085574.1| PREDICTED: DNA-directed RNA polymerase IV su... 1457 0.0
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV su... 1454 0.0
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 1399 0.0
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 1393 0.0
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 1361 0.0
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 1348 0.0
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1348 0.0
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 1337 0.0
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 1331 0.0
ref|XP_015901884.1| PREDICTED: DNA-directed RNA polymerase IV su... 1326 0.0
ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV su... 1318 0.0
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su... 1315 0.0
>ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Sesamum indicum]
Length = 1408
Score = 2137 bits (5536), Expect = 0.0
Identities = 1071/1410 (75%), Positives = 1192/1410 (84%), Gaps = 4/1410 (0%)
Frame = -3
Query: 4428 IIGTVNEVSDAALGLPTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQIL 4249
+I TVNEVSDAA GLPT+NA+EC TCGA++SK+CEGHFGLINFPFTILNPYFMSEVAQIL
Sbjct: 2 VITTVNEVSDAAFGLPTSNASECLTCGARSSKDCEGHFGLINFPFTILNPYFMSEVAQIL 61
Query: 4248 NKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAII 4069
NKICPGCKS+R VKK DS S HH P+ CRYC G+ K GYP+MKFKVSSKDVFAKTAII
Sbjct: 62 NKICPGCKSVRHAKVKKVDSTSRHHPPRSCRYCAGRPKDGYPKMKFKVSSKDVFAKTAII 121
Query: 4068 AEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLE 3889
AEV+E +NK+S LA DYWD+IPKD +Q GLPANKRVL PAQVY+ILK VCPR LE
Sbjct: 122 AEVNETLLNKNSVRGLAPDYWDVIPKDSAQEFSGLPANKRVLLPAQVYSILKHVCPRVLE 181
Query: 3888 ALVNRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRY 3709
AL+ RKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKL+DFRGTPNELSARVLDRY
Sbjct: 182 ALLKRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLIDFRGTPNELSARVLDRY 241
Query: 3708 KLSKIRSEKLSNLQKIYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKV 3529
K+SKIRSEKLS+L+KIYEKQ SGLKNIKELLLGKRTDHSFRMVVVGDPRIKV
Sbjct: 242 KVSKIRSEKLSSLEKIYEKQSTNDSASSASGLKNIKELLLGKRTDHSFRMVVVGDPRIKV 301
Query: 3528 NEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQK 3349
+EIGLP QIAENVLISDH+N+WNW +LE CC+FML +G FSVLRNGQR+CIWSKDML+
Sbjct: 302 DEIGLPFQIAENVLISDHINLWNWDRLEPCCDFMLYRRGYFSVLRNGQRICIWSKDMLRT 361
Query: 3348 GDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCL 3169
GDSICR L+DGDIVLINRPPSIHQHSLIALSV+ILPI SV SINPL+CSPLRGDFDGDCL
Sbjct: 362 GDSICRPLIDGDIVLINRPPSIHQHSLIALSVRILPIKSVVSINPLVCSPLRGDFDGDCL 421
Query: 3168 HGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQ 2989
HGYVPQSV SRVEL ELVSL++QL NGQ+GRN LE+GVLLNK E+Q
Sbjct: 422 HGYVPQSVTSRVELNELVSLNEQLHNGQNGRNLLSLSQDSLTAAYLFLEDGVLLNKPEMQ 481
Query: 2988 QLQMFCPCIPVLPAIIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSH 2809
QLQMFC +P+LPAIIK TS + WTGKQLF LLLPPDFEFAY SN VCIR+GELVSSSH
Sbjct: 482 QLQMFCSFMPILPAIIKSTS-GAAWTGKQLFGLLLPPDFEFAYASNDVCIRQGELVSSSH 540
Query: 2808 GSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESR 2629
GSAWL D+ +N+FQCLLRH RD+ LDFL+A QEVLCEWLSRRG D++SR
Sbjct: 541 GSAWLRDSCDNLFQCLLRHWRDKVLDFLHAAQEVLCEWLSRRGLSVSLSDLYLSPDSQSR 600
Query: 2628 KNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEF 2449
KN+LDEI+YGL +AEKLS++SLLMV N+D LVESS+E+E+M+ FLKE + I QQTKAE
Sbjct: 601 KNILDEIYYGLLQAEKLSDISLLMVDCNQDFLVESSEEHENMKNFLKEHMSIAQQTKAEL 660
Query: 2448 FQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPL 2269
FQAS+SASKSV WDMQNLVYK+ NNSF+AMLKAGSKGNLQKL QHSMCLGLQHSLAPL
Sbjct: 661 FQASISASKSVFWDMQNLVYKYSDKNNSFIAMLKAGSKGNLQKLVQHSMCLGLQHSLAPL 720
Query: 2268 SFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLT 2089
SF +PR LSCASWN+QK+ ++VHK H +QE +DSYIPC++VANSYLAGLNPLE FVLSLT
Sbjct: 721 SFSVPRYLSCASWNNQKNNFTVHKLH-NQETTDSYIPCSIVANSYLAGLNPLESFVLSLT 779
Query: 2088 TRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDL----SDA 1921
TRDSSF GHADVSGTLTRRLMFFMRDLI GYDGTVRSC+GN VVQF+YCT+D SDA
Sbjct: 780 TRDSSFSGHADVSGTLTRRLMFFMRDLIIGYDGTVRSCYGNQVVQFDYCTEDTSATHSDA 839
Query: 1920 SMGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 1741
M GHPVG ALDQPVS LEPSPLL LKKVL+CGVK+STG KSASLFLS
Sbjct: 840 LMAGHPVGSLAACAISEAAYSALDQPVSALEPSPLLALKKVLECGVKRSTGFKSASLFLS 899
Query: 1740 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEV 1561
RLRRWANG EYGALEVKDHLES+ FSDIVSEV+ICF SPWAC FHINKEV
Sbjct: 900 TRLRRWANGLEYGALEVKDHLESVFFSDIVSEVRICFSRQTKSNASISPWACIFHINKEV 959
Query: 1560 AKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALS 1381
AK+RR+KL+SVI L MNN TG+K K+ LPKL ITS+VCSE D K S ++I ISAAL+
Sbjct: 960 AKKRRIKLKSVIRTLSMNNGCTGLKFKITLPKLQITSQVCSEADINKTSHNIIYISAALT 1019
Query: 1380 ESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVV 1201
ESLK FSDLDILRDMV PVLL+TVIKGFPEFKKVDILWK E NH + +KR GE FLRVV
Sbjct: 1020 ESLKEFSDLDILRDMVIPVLLRTVIKGFPEFKKVDILWKDEANHKRFSKRPSGELFLRVV 1079
Query: 1200 TSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAIS 1021
SEYC +TKFWSIL DKCLRIRNIIDWERSHPDDIHD SEAYGID WQCFVNSLHSAIS
Sbjct: 1080 MSEYCDRTKFWSILKDKCLRIRNIIDWERSHPDDIHDYSEAYGIDTAWQCFVNSLHSAIS 1139
Query: 1020 DTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKA 841
DTGKTILPEHL+VTANCLS TGEF+ LNAKGL+ QRK AN+ +PFSQACF NPSDCLVKA
Sbjct: 1140 DTGKTILPEHLVVTANCLSTTGEFLPLNAKGLSLQRKEANIQAPFSQACFLNPSDCLVKA 1199
Query: 840 AKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKP 661
AKMGQ+D LQGSLEALSWGQTPS+GTGC FDI+YNGKGHEP KPTDVYTLLS HV KP
Sbjct: 1200 AKMGQLDALQGSLEALSWGQTPSIGTGCQFDIMYNGKGHEPEKPTDVYTLLSNHVRCAKP 1259
Query: 660 DDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLS 481
+D K S + S N K R++L+ +M SQHFS VGI+KISQRLKRMLKEYPMNS+L+
Sbjct: 1260 NDVAKHLSVRPNGLSP-NIKQRQTLVKRMVSQHFSVVGIQKISQRLKRMLKEYPMNSQLN 1318
Query: 480 GEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIH 301
GEDKSTA++ALQFHPRWE+KIGTGV+DIKVGRHPDH E+CF L+RTDGTEEDFSYNKCIH
Sbjct: 1319 GEDKSTAMRALQFHPRWEEKIGTGVMDIKVGRHPDHKESCFVLIRTDGTEEDFSYNKCIH 1378
Query: 300 HALEIIAPEKASAYRSRKQNLAQVPTVQLG 211
+AL+I+APEKA AY SRK+NL + P V++G
Sbjct: 1379 NALQIVAPEKAKAYLSRKENLNRNPEVEVG 1408
>ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata] gi|848869730|ref|XP_012835485.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata] gi|848869733|ref|XP_012835486.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata]
Length = 1447
Score = 2030 bits (5260), Expect = 0.0
Identities = 1011/1450 (69%), Positives = 1179/1450 (81%), Gaps = 5/1450 (0%)
Frame = -3
Query: 4548 MQQASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNA 4369
MQQASMDN+L +VQ +T RLK IHL ILSDEDA K+SA ++GTVNEVSDAALGLPT A
Sbjct: 1 MQQASMDNDLTVVQQITFGRLKGIHLRILSDEDAEKMSAIVVGTVNEVSDAALGLPTQYA 60
Query: 4368 TECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADS 4189
TEC TCGAKNS++CEGHFGLI FPFTILNPY+MSEV+QILNKICPGCK+ R K ADS
Sbjct: 61 TECATCGAKNSRDCEGHFGLIKFPFTILNPYYMSEVSQILNKICPGCKTFRHSKTKNADS 120
Query: 4188 ASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDY 4009
+S+H+Q + CRYC+GKSK GYP+M F+VSSKDVFAK+AIIAEV E+ VNK S LA DY
Sbjct: 121 SSAHNQSRNCRYCSGKSKDGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDY 180
Query: 4008 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 3829
WD+IPKD + H LP N+RVL PAQVYNILKDVCP TL+ L+ RKNSIFLNSLLVTPNS
Sbjct: 181 WDVIPKDSAVEHAVLPPNRRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNS 240
Query: 3828 HRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQ 3649
HRVREFGQRIT+DE T+MYRKLVDFRG+PNEL+ARVLDRYKLSKIRSEK+S++QK YE+Q
Sbjct: 241 HRVREFGQRITIDELTRMYRKLVDFRGSPNELTARVLDRYKLSKIRSEKVSSMQKEYERQ 300
Query: 3648 XXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLN 3469
S LKNIKEL+L KRTD+ FRMVVVGDPRI+V+EIGLP+ +AEN+LI+DH+N
Sbjct: 301 SLNDSASSSSALKNIKELVLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHIN 360
Query: 3468 IWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPP 3289
+WNW KLE CC+FML KGNFS+LRNG+R+ IWSKDML+ GDS+ R L+DGDIVL+NRPP
Sbjct: 361 LWNWDKLEVCCDFMLCHKGNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPP 420
Query: 3288 SIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSL 3109
SIHQHSLIALSVKILP SV SINPLICSP RGDFDGDCLHGYVPQSVNSRVEL ELVSL
Sbjct: 421 SIHQHSLIALSVKILPTTSVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSL 480
Query: 3108 DKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCP-CIPVLPAIIKPT 2932
DKQLVNGQ GRN LE+GV+LNKTEIQQLQMF C+P+LPA+I
Sbjct: 481 DKQLVNGQSGRNLLSLAQDSLTAAHLILEDGVILNKTEIQQLQMFSSSCMPILPALIDSA 540
Query: 2931 SRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRH 2752
SR++ WTGKQ+F LLPP EF+Y SN + GE++SSS GS+WLND SEN++QCL+R
Sbjct: 541 SRTNFWTGKQVFGHLLPP--EFSYASNSAHVMNGEVLSSS-GSSWLNDTSENLYQCLVRD 597
Query: 2751 NRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSE 2572
DRAL F +A QEVLCEW++RRG D SRKNLLDEI YGL+EA+ LS+
Sbjct: 598 FPDRALGFFDAAQEVLCEWIARRGLSVSLADLYLSSDQHSRKNLLDEIFYGLQEAKMLSD 657
Query: 2571 VSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLV 2392
+S LMV N+D LVE +E ME L E++LI QQTKAE FQAS+S SKSV+ D+QNL
Sbjct: 658 ISSLMVDWNQDFLVECPEE-VGMENLLTEQMLIGQQTKAEIFQASVSVSKSVVRDIQNLA 716
Query: 2391 YKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSY 2212
YK+ NNSF+AMLKAGSKGNL KLFQ S+CLGLQH+LAP+SF IPR+L+CASWN QK
Sbjct: 717 YKYPSKNNSFIAMLKAGSKGNLAKLFQQSLCLGLQHTLAPVSFSIPRDLTCASWNYQKGN 776
Query: 2211 YSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRR 2032
VH F+G E+S+SYIPC +V++S+LAGLNPLE FVLSLT RDSSF GHADVSGT+TRR
Sbjct: 777 SGVHNFNGYPEVSESYIPCALVSSSFLAGLNPLENFVLSLTARDSSFSGHADVSGTITRR 836
Query: 2031 LMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLS----DASMGGHPVGXXXXXXXXXXX 1864
+M+FMRD+I GYDGTVRS +GN VVQFNYCTK++S DA++GGHPVG
Sbjct: 837 IMYFMRDIIIGYDGTVRSSYGNQVVQFNYCTKEMSAADSDAAVGGHPVGALAACAISEAA 896
Query: 1863 XXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 1684
ALDQPVS LEPSPLL +KK+L+CGVKK+TG KSASLFLS L RW +G EYGA EVK
Sbjct: 897 YSALDQPVSALEPSPLLAMKKILECGVKKNTGYKSASLFLSRALGRWTDGLEYGAKEVKS 956
Query: 1683 HLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSVIDALYMNN 1504
HLE ++FSD+VSE +IC+ SPW CHFHINKEVA++R++++RSVI+ALY N+
Sbjct: 957 HLECIVFSDVVSETRICYSSQTNSSNSISPWVCHFHINKEVARKRQLQIRSVINALYTNS 1016
Query: 1503 KFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSDLDILRDMVKPV 1324
KF+GV K+ LPKL ITS++CSE D +SDS+ICIS +L E+ + FSDLDILRDMV PV
Sbjct: 1017 KFSGVNLKINLPKLQITSRLCSEADICNQSDSIICISVSLIETFREFSDLDILRDMVMPV 1076
Query: 1323 LLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKCL 1144
+LQTVIKGF EFKKVDILWK +P HPK ++ G+PFLRVV SEYC++TKFWSIL DKCL
Sbjct: 1077 ILQTVIKGFREFKKVDILWKDDPKHPKFSRSPPGKPFLRVVMSEYCERTKFWSILKDKCL 1136
Query: 1143 RIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCLS 964
IRNIIDW++SHPDDI D SEAYG+D WQCFV SLHSAIS TGK ILPEHLI+TANCLS
Sbjct: 1137 PIRNIIDWKQSHPDDILDISEAYGVDAAWQCFVTSLHSAISGTGKPILPEHLILTANCLS 1196
Query: 963 ATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWG 784
ATGEF+ LNAKGLA QRK ANV SPF+Q C SNPSDC +KAAKMGQMD LQGSLEAL+WG
Sbjct: 1197 ATGEFVPLNAKGLALQRKEANVHSPFNQGCLSNPSDCFLKAAKMGQMDGLQGSLEALAWG 1256
Query: 783 QTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNT 604
QTP +GTGC FDIVYNGKGH PAK DVY+LLSTH R KP+ KQ S SI S HFNT
Sbjct: 1257 QTPPIGTGCRFDIVYNGKGHIPAKNADVYSLLSTHAERAKPNAMPKQVSGISISSYHFNT 1316
Query: 603 KTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWED 424
K K+LL +M SQ+FS VGI+KISQRLKRMLK+YPMNS+L+GED+STAI+ALQFHP+W+D
Sbjct: 1317 KGCKTLLRRMVSQNFSMVGIQKISQRLKRMLKQYPMNSQLTGEDRSTAIRALQFHPQWKD 1376
Query: 423 KIGTGVLDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSRKQ 244
KIG+GV +IKVGRHP+H ETCFFLVRTDGTEEDFSYNKCI HALEIIAPEKA YRSRK+
Sbjct: 1377 KIGSGVSEIKVGRHPEHKETCFFLVRTDGTEEDFSYNKCIRHALEIIAPEKAKGYRSRKE 1436
Query: 243 NLAQVPTVQL 214
N+ + ++L
Sbjct: 1437 NVVRNQVIEL 1446
>gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythranthe guttata]
Length = 1379
Score = 1911 bits (4951), Expect = 0.0
Identities = 968/1444 (67%), Positives = 1125/1444 (77%), Gaps = 4/1444 (0%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
MDN+L +VQ +T RLK IHL ILSDEDA K+SA ++GTVNEVSDAALGLPT ATEC T
Sbjct: 1 MDNDLTVVQQITFGRLKGIHLRILSDEDAEKMSAIVVGTVNEVSDAALGLPTQYATECAT 60
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGAKNS++CEGHFGLI FPFTILNPY+MSEV+QILNKICPGCK+ R K ADS+S+H+
Sbjct: 61 CGAKNSRDCEGHFGLIKFPFTILNPYYMSEVSQILNKICPGCKTFRHSKTKNADSSSAHN 120
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 3994
Q + CRYC+GKSK GYP+M F+VSSKDVFAK+AIIAEV E+ VNK S LA DYWD+IP
Sbjct: 121 QSRNCRYCSGKSKDGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDYWDVIP 180
Query: 3993 KDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVRE 3814
KD + H LP N+RVL PAQVYNILKDVCP TL+ L+ RKNSIFLNSLLVTPNSHRVRE
Sbjct: 181 KDSAVEHAVLPPNRRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNSHRVRE 240
Query: 3813 FGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQXXXXX 3634
FGQRIT+DE T+MYRKLVDFRG+PNEL+AR L+ S
Sbjct: 241 FGQRITIDELTRMYRKLVDFRGSPNELTARSLNDSASSS--------------------- 279
Query: 3633 XXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWG 3454
S LKNIKEL+L KRTD+ FRMVVVGDPRI+V+EIGLP+ +AEN+LI+DH+N+WNW
Sbjct: 280 ----SALKNIKELVLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHINLWNWD 335
Query: 3453 KLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQH 3274
KLE CC+FML KGNFS+LRNG+R+ IWSKDML+ GDS+ R L+DGDIVL+NRPPSIHQH
Sbjct: 336 KLEVCCDFMLCHKGNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPPSIHQH 395
Query: 3273 SLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLV 3094
SLIALSVKILP SV SINPLICSP RGDFDGDCLHGYVPQSVNSRVEL ELVSLDKQLV
Sbjct: 396 SLIALSVKILPTTSVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSLDKQLV 455
Query: 3093 NGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSSLW 2914
NGQ GRN LE+GV+LNKTEIQQLQMF
Sbjct: 456 NGQSGRNLLSLAQDSLTAAHLILEDGVILNKTEIQQLQMF-------------------- 495
Query: 2913 TGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRAL 2734
LF LLPP EF+Y SN + GE++SSS GS+WLND SEN++QCL
Sbjct: 496 -SSSLFGHLLPP--EFSYASNSAHVMNGEVLSSS-GSSWLNDTSENLYQCL--------- 542
Query: 2733 DFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSLLMV 2554
EVLCEW++RRG D SRKNLLDEI YGL+EA+ LS++S LMV
Sbjct: 543 -------EVLCEWIARRGLSVSLADLYLSSDQHSRKNLLDEIFYGLQEAKMLSDISSLMV 595
Query: 2553 GGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGS 2374
N+D LVE +E ME L E++LI QQTKAE FQAS+S SKSV+ D+QNL YK+
Sbjct: 596 DWNQDFLVECPEE-VGMENLLTEQMLIGQQTKAEIFQASVSVSKSVVRDIQNLAYKYPSK 654
Query: 2373 NNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKF 2194
NNSF+AMLKAGSKGNL KLFQ S+CLGLQH+LAP+SF IPR+L+CASWN QK VH F
Sbjct: 655 NNSFIAMLKAGSKGNLAKLFQQSLCLGLQHTLAPVSFSIPRDLTCASWNYQKGNSGVHNF 714
Query: 2193 HGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMR 2014
+G E+S+SYIPC +V++S+LAGLNPLE FVLSLT RDSSF GHADVSGT+TRR+M+FMR
Sbjct: 715 NGYPEVSESYIPCALVSSSFLAGLNPLENFVLSLTARDSSFSGHADVSGTITRRIMYFMR 774
Query: 2013 DLINGYDGTVRSCHGNHVVQFNYCTKDL----SDASMGGHPVGXXXXXXXXXXXXXALDQ 1846
D+I GYDGTVRS +GN VVQFNYCTK++ SDA++GGHPVG ALDQ
Sbjct: 775 DIIIGYDGTVRSSYGNQVVQFNYCTKEMSAADSDAAVGGHPVGALAACAISEAAYSALDQ 834
Query: 1845 PVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLL 1666
PVS LEPSPLL +KK+L+CGVKK+TG KSASLFLS L RW +G EYGA EVK HLE ++
Sbjct: 835 PVSALEPSPLLAMKKILECGVKKNTGYKSASLFLSRALGRWTDGLEYGAKEVKSHLECIV 894
Query: 1665 FSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSVIDALYMNNKFTGVK 1486
FSD+VSE +IC+ SPW CHFHINKEVA++R++++RSVI+ALY N+KF+GV
Sbjct: 895 FSDVVSETRICYSSQTNSSNSISPWVCHFHINKEVARKRQLQIRSVINALYTNSKFSGVN 954
Query: 1485 SKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSDLDILRDMVKPVLLQTVI 1306
K+ LPKL ITS++CSE D +SDS+ICIS +L E+ + FSDLDILRDMV PV+LQTVI
Sbjct: 955 LKINLPKLQITSRLCSEADICNQSDSIICISVSLIETFREFSDLDILRDMVMPVILQTVI 1014
Query: 1305 KGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKCLRIRNII 1126
KGF EFKKVDILWK +P HPK ++ G+PFLRVV SEYC++TKFWSIL DKCL IRNII
Sbjct: 1015 KGFREFKKVDILWKDDPKHPKFSRSPPGKPFLRVVMSEYCERTKFWSILKDKCLPIRNII 1074
Query: 1125 DWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCLSATGEFI 946
DW++SHPDDI D SEAYG+D WQCFV SLHSAIS TGK ILPEHLI+TANCLSATGEF+
Sbjct: 1075 DWKQSHPDDILDISEAYGVDAAWQCFVTSLHSAISGTGKPILPEHLILTANCLSATGEFV 1134
Query: 945 ALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVG 766
LNAKGLA QRK ANV SPF+Q C SNPSDC +KAAKMGQMD LQGSLEAL+WGQTP +G
Sbjct: 1135 PLNAKGLALQRKEANVHSPFNQGCLSNPSDCFLKAAKMGQMDGLQGSLEALAWGQTPPIG 1194
Query: 765 TGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNTKTRKSL 586
TGC FDIVYNGKGH PAK DVY+LLSTH R KP+ KQ S SI S HFNTK K+L
Sbjct: 1195 TGCRFDIVYNGKGHIPAKNADVYSLLSTHAERAKPNAMPKQVSGISISSYHFNTKGCKTL 1254
Query: 585 LTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV 406
L +M SQ+FS VGI+KISQRLKRMLK+YPMNS+L+GED+STAI+ALQFHP+W+DKIG+GV
Sbjct: 1255 LRRMVSQNFSMVGIQKISQRLKRMLKQYPMNSQLTGEDRSTAIRALQFHPQWKDKIGSGV 1314
Query: 405 LDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSRKQNLAQVP 226
+IKVGRHP+H ETCFFLVRTDGTEEDFSYNKCI HALEIIAPEKA YRSRK+N+ +
Sbjct: 1315 SEIKVGRHPEHKETCFFLVRTDGTEEDFSYNKCIRHALEIIAPEKAKGYRSRKENVVRNQ 1374
Query: 225 TVQL 214
++L
Sbjct: 1375 VIEL 1378
>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
Length = 1380
Score = 1722 bits (4460), Expect = 0.0
Identities = 885/1398 (63%), Positives = 1065/1398 (76%), Gaps = 7/1398 (0%)
Frame = -3
Query: 4443 KISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSE 4264
KISA ++ VNEVSDA+LGLP+ NA EC TCGA ++KECEGHFG+INF +TILNPY+M E
Sbjct: 1 KISAIVVSNVNEVSDASLGLPSINARECLTCGANSAKECEGHFGVINFNYTILNPYYMPE 60
Query: 4263 VAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFA 4084
+A ILNKICPGCKSIR+ +KK DSAS + C+YCN S GYP+MKF+VS+++VFA
Sbjct: 61 IANILNKICPGCKSIRQRKIKKGDSASQQN----CKYCNVTS-LGYPKMKFRVSTREVFA 115
Query: 4083 KTAIIAEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVC 3904
KTAIIAEV EM VN+ LASDYWDIIPKD Q +P+N+RVL P+QVY+ILKDVC
Sbjct: 116 KTAIIAEVQEMAVNQHHCIGLASDYWDIIPKDSPQDQSDIPSNRRVLYPSQVYSILKDVC 175
Query: 3903 PRTLEALVNRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSAR 3724
P+TLEAL+ RKNSIFLNSLLVTPNSHRVREFG ITVD TT++YRKL DFRG+ NEL+AR
Sbjct: 176 PKTLEALLKRKNSIFLNSLLVTPNSHRVREFGGHITVDGTTRLYRKLTDFRGSANELNAR 235
Query: 3723 VLDRYKLSKIRSEKLSNLQKIYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGD 3544
VL+RYK+ SEK+S ++KIYEKQ SGL+NIKEL+L KRTD++FRMVVVGD
Sbjct: 236 VLERYKIC---SEKVSAIEKIYEKQSSNDSASSSSGLRNIKELILAKRTDNAFRMVVVGD 292
Query: 3543 PRIKVNEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFS---VLRNGQRVCI 3373
PR+KV+EIGLP QIAE+VLISD ++I +WGKLE C+ ML +K FS V+RNGQ+ I
Sbjct: 293 PRLKVDEIGLPIQIAESVLISDLISIHSWGKLESWCDLMLYKKAPFSPFSVIRNGQKTHI 352
Query: 3372 WSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLR 3193
+SKDMLQ GDSI R + DGDIVLINRPPSIHQHSL+ALSVK+LPI SV +INPL C PLR
Sbjct: 353 FSKDMLQVGDSISRPISDGDIVLINRPPSIHQHSLLALSVKVLPIKSVIAINPLTCLPLR 412
Query: 3192 GDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGV 3013
GDFDGDCLHG+VPQS+NSRVE+ EL SL KQLVNGQ+GR+ L N V
Sbjct: 413 GDFDGDCLHGFVPQSLNSRVEIGELASLKKQLVNGQNGRSLMSLGQDSLTAAYLILNNSV 472
Query: 3012 LLNKTEIQQLQMFCPCIPVLPAIIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRK 2833
LNK E QQLQMFC C+P+LPAI+ +S + WTGKQLF+LLLP D F Y S+ VCIRK
Sbjct: 473 TLNKAEFQQLQMFCSCVPILPAIVNMSSNGTWWTGKQLFTLLLPVDSGFDYVSSDVCIRK 532
Query: 2832 GELVSSSHGSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXX 2653
GEL+SSS+ ++WL D EN++ CL+RH DRAL FLN QEVLCEWLSR+G
Sbjct: 533 GELISSSNCTSWLRDADENLYLCLVRHCGDRALGFLNTAQEVLCEWLSRQGLSVSLSDLY 592
Query: 2652 XXXDTESRKNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILI 2473
D SRKNLL+E++YGL+EA +LSEVS LMV + D LVE ED +KE I
Sbjct: 593 ISSDRHSRKNLLEEVYYGLQEAGRLSEVSSLMVDQHRDFLVEHMGNMEDS---IKEHTAI 649
Query: 2472 DQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLG 2293
+AE FQAS+SAS+SV D+QNLVY++ + NSF++MLK+GSKGNLQK QHSMC+G
Sbjct: 650 SSHARAELFQASVSASRSVFRDLQNLVYRYASNENSFISMLKSGSKGNLQKFVQHSMCVG 709
Query: 2292 LQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPL 2113
LQHSLAPLSF + +L+CASWN +K Y + K +SDSYI C++V NS+L GLNP+
Sbjct: 710 LQHSLAPLSFSVADQLTCASWNKEKCYSDIPK----SVVSDSYIVCSIVKNSFLEGLNPI 765
Query: 2112 ECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKD 1933
+CF SLT+RDSSF GHADVSGT+ RRLM+FMRDLI GYDGTVR+C+GN VVQFNY + D
Sbjct: 766 QCFTHSLTSRDSSFSGHADVSGTICRRLMYFMRDLIIGYDGTVRNCYGNQVVQFNYFSGD 825
Query: 1932 LS-DASMGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSA 1756
++ DA+MGGHPVG ALD P+S LEPSPLL LK+VL+CGVK+ST K+A
Sbjct: 826 VNKDAAMGGHPVGSLAGCAISEAAYSALDLPISALEPSPLLALKEVLECGVKRSTRCKTA 885
Query: 1755 SLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFH 1576
SLFLS LRRWA+GFEYGALEVK+HLE L FSDIVS+V+IC SPW C+F+
Sbjct: 886 SLFLSKGLRRWAHGFEYGALEVKNHLERLCFSDIVSDVRIC-PWIDDNTSTTSPWTCNFY 944
Query: 1575 INKEVAKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICI 1396
INKEVAK+ R+K+ S++DAL+ NNK K K+ LP L I++K+CSE D K+SDS CI
Sbjct: 945 INKEVAKKMRLKMHSIVDALHRNNKLASKKLKIYLPALWISTKLCSEADV-KRSDS-FCI 1002
Query: 1395 SAALSESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEP 1216
+A L + FSD++ILRDMV PVLL+TVIKGFPEFKKVDILWK EPNH K +R GE
Sbjct: 1003 AAKLIMKHEKFSDMEILRDMVVPVLLKTVIKGFPEFKKVDILWKDEPNHEKVARRTSGEL 1062
Query: 1215 FLRVVTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSL 1036
F+RV SEYC KFWS L+D CLRIRN+IDWERS PDDI D S A+GI WQ FV +L
Sbjct: 1063 FIRVSMSEYCDPNKFWSNLVDSCLRIRNLIDWERSLPDDILDYSNAFGISSAWQSFVKNL 1122
Query: 1035 HSAISDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSD 856
HS+I DTGKTILPEHLIVTANCLSATGEF+ALNAKGL QRK ++ SPF+QA F NPSD
Sbjct: 1123 HSSIIDTGKTILPEHLIVTANCLSATGEFVALNAKGLVNQRKEIDIRSPFNQATFLNPSD 1182
Query: 855 CLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV 676
VKAAK Q D L GS+EALSWGQTP +GTGC FD++Y GKGHE AK DVY LL +H
Sbjct: 1183 TFVKAAKACQTDDLVGSVEALSWGQTPRIGTGCQFDLIYKGKGHETAKNEDVYGLLISHD 1242
Query: 675 ARTKPDDPMKQFSEKSIVSSH-FNTKTRKSLLTKMAS--QHFSEVGIRKISQRLKRMLKE 505
R K + + S KS H NT+ KS L ++++ H S +GI+KISQ+LKR+LKE
Sbjct: 1243 GRAKSNVKERSLSMKSSNPLHGINTQQHKSWLERLSANMNHLSVLGIKKISQKLKRILKE 1302
Query: 504 YPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNETCFFLVRTDGTEED 325
YPM+ +LSGEDKSTA+ ALQFHPRW +KIG+G+ +IKVG HP+H +TCF L R+DGTEED
Sbjct: 1303 YPMDRQLSGEDKSTALTALQFHPRWPEKIGSGIQEIKVGLHPEHQQTCFILKRSDGTEED 1362
Query: 324 FSYNKCIHHALEIIAPEK 271
FSY KCI+HALE++AP K
Sbjct: 1363 FSYRKCINHALELVAPRK 1380
>emb|CDP09818.1| unnamed protein product [Coffea canephora]
Length = 1511
Score = 1531 bits (3964), Expect = 0.0
Identities = 814/1467 (55%), Positives = 1017/1467 (69%), Gaps = 26/1467 (1%)
Frame = -3
Query: 4563 VSEGKMQQASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGL 4384
+SE M +A++D H + RL +I NILS+ DAV+ S +IG +EV+D ALG
Sbjct: 32 ISELNMDRATIDIE-HSEKLEQKGRLMSISFNILSEADAVRKSVKLIGAASEVTDPALGF 90
Query: 4383 PTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNV 4204
P C TCGAK+ +ECEGHFGLINFPFTILNPYF+ EVAQILNKICP CKS+R V
Sbjct: 91 PNL-INHCNTCGAKDRRECEGHFGLINFPFTILNPYFLPEVAQILNKICPACKSVRVNKV 149
Query: 4203 KKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFV-NKSSDW 4027
K + S S C+YC+G+S+ YP MKFKV+SKDVFAKTAI AEV E N+SS+
Sbjct: 150 KSSGSTSVRDHSDTCKYCDGRSRDSYPPMKFKVTSKDVFAKTAISAEVSERSSSNRSSNG 209
Query: 4026 VLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSL 3847
+ASDYWDIIP D Q L +NKR+LS AQVYNILKDV PR LE+ + RK+S+FLN
Sbjct: 210 SMASDYWDIIPSDAQQDLSNLGSNKRLLSHAQVYNILKDVDPRFLESFLKRKSSVFLNCF 269
Query: 3846 LVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 3667
L+TPN HRV E GQ IT D TK+Y+KL+DFRGT NELSARVLD K+SK+RSEK S +
Sbjct: 270 LLTPNCHRVTELGQHITFDTKTKLYKKLIDFRGTANELSARVLDLIKVSKVRSEKSSAIN 329
Query: 3666 KIYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 3487
+ SGLK IKELLLGKRTDH+FRMVVVGDP I + EIG+P IAE +L
Sbjct: 330 SAFSVLGFKDSAVATSGLKYIKELLLGKRTDHAFRMVVVGDPNINLGEIGMPRHIAEKLL 389
Query: 3486 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 3307
+S+H+N WN+GKL+ +L G V R G+ + D L GD + R +LDGDIV
Sbjct: 390 VSEHVNKWNFGKLKDYVALILVGGGEICVRRGGRLEKLSIIDKLCCGDVLYRPMLDGDIV 449
Query: 3306 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 3127
LINRPPSIHQHS+++LSV+ILPINSV SINPLICSPLRGDFDGDCLHGYV QSV+SRVEL
Sbjct: 450 LINRPPSIHQHSMLSLSVRILPINSVLSINPLICSPLRGDFDGDCLHGYVSQSVDSRVEL 509
Query: 3126 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPA 2947
ELV+L+KQL+NGQ GRN LE+GV L+K ++QQLQMFC C +PA
Sbjct: 510 NELVALNKQLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLDKFQMQQLQMFCSCPMPIPA 569
Query: 2946 IIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQ 2767
I K WTGKQLFSLL+PP F++ +SNGV I KGE+V+SS GS+WL DN N+F
Sbjct: 570 ITKAPGNKCFWTGKQLFSLLIPPCFDYVSQSNGVQISKGEIVTSSSGSSWLRDNDGNLFH 629
Query: 2766 CLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEA 2587
L+R ++ L FL A QEVLCEWL+ RG D SR+N+++E+ GL+EA
Sbjct: 630 SLVRCCKNEVLGFLCAAQEVLCEWLAMRGLSVSLSDLYLTSDAYSRQNMIEEVSCGLQEA 689
Query: 2586 EKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERI-LIDQQTKAEFFQASLSASKSVLW 2410
E LS + LLM+G N+D LVES++ N+ F ++ + I QQ + +AS+SA K V
Sbjct: 690 ELLSSIRLLMMGSNQDFLVESTEANKRSVDFGEQHLSSIQQQNSSVLSEASVSAFKQVFL 749
Query: 2409 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2230
D+Q+LVY + +NSF++ML AGSKGNL KL QHSMCLGLQHS+ PLSF IP +LSCA+W
Sbjct: 750 DVQHLVYHYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLGLQHSVVPLSFSIPHQLSCATW 809
Query: 2229 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2050
N K SVH+ HG+ + S SYIP ++ NS+L GLNP+ECFV SLTTRDSSF GHADVS
Sbjct: 810 NYHK--ISVHESHGTLDHSGSYIPFAVIENSFLTGLNPMECFVHSLTTRDSSFSGHADVS 867
Query: 2049 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKD---------------LSDASM 1915
GTLTR+LMFFMRDL GYDGTVR+ +GN ++QF+Y ++D +S +
Sbjct: 868 GTLTRKLMFFMRDLSIGYDGTVRNSYGNQLIQFSYNSRDTLTPCNCNDESPSETISAYDV 927
Query: 1914 GGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGR 1735
GGHPVG ALD P+S LE SPLL LKK+LDCGVKKS+G K+AS+FL +
Sbjct: 928 GGHPVGALAACAISEAAYSALDLPISALESSPLLNLKKILDCGVKKSSGDKTASIFLCKK 987
Query: 1734 LRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAK 1555
L R G EYGALEVKDHLE L+ D+VS I + SPW CHFHI+KE+ K
Sbjct: 988 LGRQTYGLEYGALEVKDHLERLMLEDVVSSSMISYSKEKCSRSQISPWICHFHISKEIIK 1047
Query: 1554 RRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAA-LSE 1378
R+R++++S+IDAL M + VK K+ LP L IT K CS + + D+ IC++ + L +
Sbjct: 1048 RKRLRVQSIIDALNMAWRSAKVKLKINLPDLQITGKACSLALKQNEKDTKICLTVSILEK 1107
Query: 1377 SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVT 1198
S K LDILR+MV P LL TVIKGFPEFKKVDI+WK N KS+K LG +LRV
Sbjct: 1108 SKKSSLRLDILRNMVMPFLLGTVIKGFPEFKKVDIMWKDCRNSSKSSKGSLGGVYLRVFM 1167
Query: 1197 SEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISD 1018
SE C +TKFWS+L+D CLRIR++IDWERSHPDDIHD + AYGID F++SL+SAISD
Sbjct: 1168 SEKCDRTKFWSVLVDNCLRIRDLIDWERSHPDDIHDMAPAYGIDAAVNHFLSSLNSAISD 1227
Query: 1017 TGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAA 838
TGKTILPEHL++TA+CLSATGEF+ALNAKGLA+QRK V SPF QACFS+P DC V+AA
Sbjct: 1228 TGKTILPEHLVLTADCLSATGEFVALNAKGLAQQRKETAVSSPFLQACFSSPGDCFVRAA 1287
Query: 837 KMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV---ART 667
K G +D LQG+++AL+WG PS+GTG FDI+Y+GKGHEPAK DVY LL + V +
Sbjct: 1288 KTGIVDNLQGTVDALAWGMVPSIGTGARFDIIYSGKGHEPAKSIDVYDLLGSIVNLNQQV 1347
Query: 666 KPDDPMKQFSEKSIVSSHF---NTKTRKSLLTK-MASQHFSEVGIRKISQRLKRMLKEYP 499
K + + S KSIV F + T+ +L + + FS I+K+S LK ML +Y
Sbjct: 1348 KFPNKDYEMSGKSIVQHLFAYDDLATKGCILPRTLLRNFFSLKDIQKLSHSLKHMLNKYD 1407
Query: 498 MNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDH-NETCFFLVRTDGTEEDF 322
++ +LS DK+ + AL FHPR +KIG G +IKVG H ++ N CF LVR DGT DF
Sbjct: 1408 VDCQLSEIDKTIVMAALSFHPRSSEKIGIGAHEIKVGYHSEYDNSRCFVLVRKDGTVADF 1467
Query: 321 SYNKCIHHALEIIAPEKASAYRSRKQN 241
SY+KC+H+AL++IAP+ A Y S+ N
Sbjct: 1468 SYHKCVHNALQLIAPDWAKKYESKWLN 1494
>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Nicotiana
sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
Length = 1447
Score = 1499 bits (3882), Expect = 0.0
Identities = 802/1449 (55%), Positives = 1004/1449 (69%), Gaps = 23/1449 (1%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++L I Q V S LK I NILS+ DA K++A +IG VNEV+D ALG P EC T
Sbjct: 1 MEHDL-IEQQVPSGTLKGIIFNILSETDAAKLAAKVIGVVNEVTDPALGFPNP-IFECST 58
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGAK+ K+CEGHFGLINFPFTILNPYF+SEVA+ILNK+CPGCKS+RR VK AD+ S+
Sbjct: 59 CGAKDGKKCEGHFGLINFPFTILNPYFISEVAKILNKVCPGCKSVRRDKVKGADTTSA-- 116
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 3994
C YC+G + GYP MKFKVS KD+F +TAIIAEV E + ++S LASDYW+ IP
Sbjct: 117 ----CNYCDGILR-GYPPMKFKVSPKDMFGRTAIIAEVSEKKLQQTSGGSLASDYWNFIP 171
Query: 3993 KDPSQ-AHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVR 3817
D Q A K+VL+ AQVY+ILKDV P LE L+ RKNSIFL S L+TPNSHRV
Sbjct: 172 DDAQQDASLNSSKYKKVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVT 231
Query: 3816 EFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEK-LSNLQKIYEKQXXX 3640
EFGQ + DE+ ++YRKL+DFRGT N+LS V +R K+SKIR+E+ L+N
Sbjct: 232 EFGQHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTN----------- 280
Query: 3639 XXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 3460
+GLK +KEL+L KRT+H+FRMVVVGDP IK+ EIG+P +AE++ +++ L+ N
Sbjct: 281 DPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRN 340
Query: 3459 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 3280
W KL C+ M+ +KG V RNG V I D LQ+GD I R L+DGD+VLINRPPSIH
Sbjct: 341 WEKLSDHCDLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIH 400
Query: 3279 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 3100
QHSLIALSV+ILPI SV SINPL+CSP RGDFDGDCLHGYVPQS++SRVEL+ELV L++Q
Sbjct: 401 QHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQ 460
Query: 3099 LVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRS- 2923
L++GQ G+N LE GV L++ ++QQLQMFCP +PAI++ SR+
Sbjct: 461 LIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSRNR 520
Query: 2922 SLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRD 2743
S WTGKQLF L LP D + + SNGVCI GE+V+SS GS+WL D SEN+F L++H+
Sbjct: 521 SYWTGKQLFGLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGG 580
Query: 2742 RALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSL 2563
LD L A Q VLCEWLS RG D SR+N++DE+ GL+EAE+LS V L
Sbjct: 581 DTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYVQL 640
Query: 2562 LMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKH 2383
LM N D L S + ++ F E + I Q A QAS++A K V D+QNLVY +
Sbjct: 641 LMTRYNHDFLAGSLEVSQKAMGFDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNY 700
Query: 2382 CGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSV 2203
NSF+AMLKAGSKGNL KL QHSMCLGLQ SL PLSF +PR+LSC +WN+ K++
Sbjct: 701 ASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPF 760
Query: 2202 HKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMF 2023
K H E SYIPC +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+LMF
Sbjct: 761 EKAHNVPERPGSYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMF 820
Query: 2022 FMRDLINGYDGTVRSCHGNHVVQFNYCTKDL-------SDASMGGHPVGXXXXXXXXXXX 1864
FMRDL GYDGTVR+ +GN +VQF+Y D + ++GGHPVG
Sbjct: 821 FMRDLYIGYDGTVRNAYGNQIVQFSYYNTDQIASTYNRASHAIGGHPVGSLAACAISEAA 880
Query: 1863 XXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 1684
ALD P+ LEPSPLL LKK+L+ GVK ++ K+ASLFLS RL RWA+GFEYGALEVK
Sbjct: 881 YSALDLPIGALEPSPLLNLKKILEAGVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKG 940
Query: 1683 HLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSVIDALYMNN 1504
HLE LL SDIVS V ICF SPW CHFHI+KE K RR+KL+SVIDAL M
Sbjct: 941 HLERLLLSDIVSTVMICFSPGTYKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRY 1000
Query: 1503 KFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLK-GFSDLDILRDMVKP 1327
+ T +++ + LP LHIT K CS V +K++S ICI+ A+ E+ K FS LD LRD+V P
Sbjct: 1001 RSTRMEAGIDLPSLHITCKDCS-VAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIP 1059
Query: 1326 VLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKC 1147
LL+TVIKGF FKKVDILW+ P+ KS++ GE +L+V SE C + FW+ L+D C
Sbjct: 1060 FLLETVIKGFSAFKKVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSC 1119
Query: 1146 LRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCL 967
L I ++IDWE SHPD++HD + AYG+DV W+ F+ +L+SA+S+TGK ILPEHL++ A+CL
Sbjct: 1120 LHIMDLIDWEWSHPDNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCL 1179
Query: 966 SATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSW 787
+ATGEF+ LN KGLA+QRK A V SPF QACFS+P D V+AAK D LQGSLEAL+W
Sbjct: 1180 TATGEFVPLNTKGLAQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAW 1239
Query: 786 GQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD-----DPMKQFSEKSIV 622
G+TPS GTG FDI+Y+GKG+EPA PTDVY LL HV K D + ++K++
Sbjct: 1240 GKTPSTGTGFSFDIIYSGKGYEPAAPTDVYALLGNHVTSNKQQVKVTLDEDNETADKALA 1299
Query: 621 S-----SHFNTKTRKSLLTKMASQHF-SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTA 460
NTK KS + + F S I+K+SQ LK+ML +Y ++ +LS DKS
Sbjct: 1300 RRLCKLDDLNTKRCKSQWSIANLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIV 1359
Query: 459 IKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLVRTDGTEEDFSYNKCIHHALEII 283
+ AL FHPR +KIG G ++IK+G H ++ ++ CF LVRTDGT EDFSY KC+ HALE+I
Sbjct: 1360 MMALHFHPRRSEKIGKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELI 1419
Query: 282 APEKASAYR 256
AP+KA Y+
Sbjct: 1420 APQKAKTYK 1428
>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana tomentosiformis]
Length = 1447
Score = 1497 bits (3875), Expect = 0.0
Identities = 798/1449 (55%), Positives = 1006/1449 (69%), Gaps = 23/1449 (1%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++L I Q V S LK I NILS+ DA K++A +IG+VNEV+D ALG P EC T
Sbjct: 1 MEHDL-IEQQVPSGTLKGIIFNILSETDAAKLAAKVIGSVNEVTDPALGFPNP-IFECST 58
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGAK+ K+CEGHFGLINFPFTILNPYF+SEVA+ILNK+CPGCKS+RR VK AD+ S+
Sbjct: 59 CGAKDGKKCEGHFGLINFPFTILNPYFISEVAKILNKVCPGCKSVRRDKVKGADTTSA-- 116
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 3994
C YC+G + GYP MKFKVS KD+F KTAI+AEV E + ++ LASDYW+ IP
Sbjct: 117 ----CNYCDGILR-GYPPMKFKVSPKDMFGKTAIMAEVSEKKLQQTCGGSLASDYWNFIP 171
Query: 3993 KDPSQ-AHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVR 3817
D Q A KRVL+ AQVY+ILKDV P LE L+ RKNSIFL S L+TPNSHRV
Sbjct: 172 DDAQQDASLNSSKYKRVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVT 231
Query: 3816 EFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEK-LSNLQKIYEKQXXX 3640
EFGQ + DE+ ++YRKL+DFRGT N+LS V +R K+SKIR+E+ L+N
Sbjct: 232 EFGQHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTN----------- 280
Query: 3639 XXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 3460
+GLK +KEL+L KRT+H+FRMVVVGDP IK+ EIG+P +AE++ +++ L+ N
Sbjct: 281 DPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRN 340
Query: 3459 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 3280
W KL C+ M+ +KG V RNG V I D LQ+GD I R L+DGD+VLINRPPSIH
Sbjct: 341 WEKLTDHCDLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIH 400
Query: 3279 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 3100
QHSLIALSV+ILPI SV SINPL+CSP RGDFDGDCLHGYVPQS++SRVEL+ELV L++Q
Sbjct: 401 QHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQ 460
Query: 3099 LVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRS- 2923
L++GQ G+N LE GV L++ ++QQLQMFCP +PAI++ SR+
Sbjct: 461 LIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSRNR 520
Query: 2922 SLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRD 2743
S WTGKQLFSL LP D + + SNGVCI GE+V+SS GS+WL D SEN+F L++H+
Sbjct: 521 SYWTGKQLFSLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGG 580
Query: 2742 RALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSL 2563
LD L A Q VLCEWLS RG D SR+N++DE+ GL+EAE+LS + L
Sbjct: 581 DTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYIQL 640
Query: 2562 LMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKH 2383
LM N D L S + ++ F E + I QQ A QAS+S+ K V D+QNLVY +
Sbjct: 641 LMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQKSASLSQASVSSFKHVFRDIQNLVYNY 700
Query: 2382 CGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSV 2203
NSF+AMLKAGSKGNL KL QHSMCLGLQ SL PLSF +PR LSC +WN+ K++
Sbjct: 701 ASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRRLSCDAWNNHKAHLPF 760
Query: 2202 HKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMF 2023
K H E YIPC +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+LMF
Sbjct: 761 EKAHNVPERPGPYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMF 820
Query: 2022 FMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-------MGGHPVGXXXXXXXXXXX 1864
FMRDL +GYDGTVR+ +GN +VQF+Y + D ++ +GGHPVG
Sbjct: 821 FMRDLYSGYDGTVRNAYGNQIVQFSYYSADQISSTYNRASHAIGGHPVGSLAACAISEAA 880
Query: 1863 XXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 1684
ALD PV LEPSPLL LKK+L+ GVK ++ K+A+LFLS RL RWA+GFEYGA+EVK
Sbjct: 881 YSALDLPVGALEPSPLLNLKKILEAGVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKG 940
Query: 1683 HLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSVIDALYMNN 1504
HLE LL SDIVS V ICF SPW CHFHI+KE K RR+KL+SVIDAL M
Sbjct: 941 HLERLLLSDIVSTVMICFSPETCKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRY 1000
Query: 1503 KFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLK-GFSDLDILRDMVKP 1327
+ T +++ + LP LHIT K CS + +K++S ICI+ A+ E+ K FS LD LRD+V P
Sbjct: 1001 RSTRMEAGIDLPSLHITCKDCSAAE-MQKANSKICITVAVVETSKDSFSLLDTLRDLVIP 1059
Query: 1326 VLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKC 1147
LL+TVIKGF FKKVDILW+ P+ KS++ GE +L+V SE C + FW+ L+D C
Sbjct: 1060 FLLETVIKGFSAFKKVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSC 1119
Query: 1146 LRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCL 967
L I ++IDWE+SHPD++HD + AYG+DV W+ F+ +L+SA+S+TGK IL EHL++ A+CL
Sbjct: 1120 LHIMDLIDWEQSHPDNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCL 1179
Query: 966 SATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSW 787
+ATGEF+ LN KGLA+QRK A V SPF QACFS+P D V+AAK D LQGSLEAL+W
Sbjct: 1180 TATGEFVPLNTKGLAQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAW 1239
Query: 786 GQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD-----DPMKQFSEKSIV 622
G+TPS GTG FDI+Y+GKG+EPA PTDVY LL HV + D + ++K++
Sbjct: 1240 GKTPSTGTGFSFDIIYSGKGYEPAAPTDVYALLGNHVTSNRQQVKVTLDEDNETADKALA 1299
Query: 621 S-----SHFNTKTRKSLLTKMASQHF-SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTA 460
NTK KS + + F S I+K+SQ LK+ML +Y ++ +LS DKS
Sbjct: 1300 RRLCKLDDLNTKRCKSQWSIANLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIV 1359
Query: 459 IKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLVRTDGTEEDFSYNKCIHHALEII 283
+ AL FHPR +KIG G ++IK+G H ++ ++ CF LVRTDGT EDFSY KC+ HALE+I
Sbjct: 1360 MMALHFHPRRSEKIGKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELI 1419
Query: 282 APEKASAYR 256
AP+KA Y+
Sbjct: 1420 APQKAKTYK 1428
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Solanum tuberosum] gi|971571222|ref|XP_015169636.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Solanum tuberosum]
gi|971571225|ref|XP_015169637.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X2 [Solanum
tuberosum]
Length = 1446
Score = 1478 bits (3827), Expect = 0.0
Identities = 793/1459 (54%), Positives = 1005/1459 (68%), Gaps = 33/1459 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++ +I Q V L I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPEGILTGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGSDRTSA-- 117
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWV---LASDYWD 4003
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E + K LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWD 172
Query: 4002 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 3826
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLKRKNSIFLKSCLLTPNSH 232
Query: 3825 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 3646
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 3645 XXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 3466
+GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESLSL 342
Query: 3465 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 3286
NW ++ C+ M+ ++G V RNG V I D LQ GD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDRLQNGDIIHRPLIDGDVVMINRPPS 402
Query: 3285 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 3106
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++SR+EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALK 462
Query: 3105 KQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 2929
+QL++GQ+G+N LE GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 2928 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2749
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++H+
Sbjct: 523 NLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHH 582
Query: 2748 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEV 2569
LD L A Q VLCEWLS RG D+ SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2568 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2389
LLM+ N+D L S +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2388 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2209
+ ++NS +AMLKAGSKGNL KL QHSMCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2208 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2029
+ K H E SYIP +V +S+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2028 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 1888
MFFMRDL GYDGTVR+ +GN +VQF+Y TK DA ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLA 882
Query: 1887 XXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 1708
ALDQPVS LE SPLL LKK+L+ G +G K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFE 942
Query: 1707 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSV 1528
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RR+KLRS+
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSI 1002
Query: 1527 IDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 1351
+DAL M + K LP LHIT K CS + RK+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 1350 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKF 1171
LRD+V P LL+TVIKGF FKKVDILWK P+ KS++ GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKF 1121
Query: 1170 WSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 991
W+ L+D CL+IR++IDWERS+PDD+HD + AYGIDV W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 990 LIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 811
L++ A+ L+ATGEF+ L+AKGL QRKAA V SPF QACFSNP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQ 1241
Query: 810 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKP--------DD 655
GSLE+L+WG+TPS+GTG FDI+Y+GKG+EPA+P DVYTLL HV P D
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDG 1301
Query: 654 PM--KQFSEKSIVSSHFNTKTRKS--LLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSK 487
M K + + N K+ KS +TK+ S S I+K+SQ LK+ML +Y ++ +
Sbjct: 1302 GMDGKSLARRLDRLDDLNKKSCKSEWSITKLRS-FISFNDIKKLSQSLKQMLSKYAIDRE 1360
Query: 486 LSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPDHNET-CFFLVRTDGTEEDFSYN 313
L+ DK A+ ALQFHPR +KIG G +IK+G H ++ ++ CF LVR+DG+ EDFSY
Sbjct: 1361 LNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYR 1420
Query: 312 KCIHHALEIIAPEKASAYR 256
KC+ HALE+IAP+KA R
Sbjct: 1421 KCMQHALELIAPQKAKTSR 1439
>ref|XP_015085574.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048058|ref|XP_015085575.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048060|ref|XP_015085576.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048062|ref|XP_015085577.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii]
Length = 1446
Score = 1457 bits (3773), Expect = 0.0
Identities = 786/1467 (53%), Positives = 998/1467 (68%), Gaps = 41/1467 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++ +I Q V L+ I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPDGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKVSDRTSA-- 117
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMF---VNKSSDWVLASDYWD 4003
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E V K++ LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWD 172
Query: 4002 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 3826
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSH 232
Query: 3825 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 3646
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 3645 XXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 3466
+GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSL 342
Query: 3465 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 3286
NW ++ C+ M+ ++G V RNG V I D LQKGD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPS 402
Query: 3285 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 3106
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++S +EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALK 462
Query: 3105 KQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 2929
+QL++GQ+G+N LE GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 2928 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2749
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++HN
Sbjct: 523 NICYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHN 582
Query: 2748 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEV 2569
LD L A Q VLCEWLS RG D+ SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2568 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2389
LLM+ N+D L + +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGNLEESKNSLGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2388 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2209
+ ++NS +AMLKAGSKGNL KL QHSMCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2208 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2029
+ K H E SYIP +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKNSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2028 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 1888
MFFMRDL GYDGTVR+ +GN +VQF+Y TK +A ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLA 882
Query: 1887 XXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 1708
ALDQPVS LE SPLL LKK+L+ G TG K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFE 942
Query: 1707 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSV 1528
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RR+KLRSV
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSV 1002
Query: 1527 IDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 1351
+DAL M + K+ LP LHIT K CS + +K+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEAQKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 1350 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKF 1171
LRD+V P LL TVIKGF FKKVDILWK P+ KS++ GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLDTVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKF 1121
Query: 1170 WSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 991
W+ L+D CL+IR++IDWERS+PDD+HD + AYGID+ W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDLAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 990 LIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 811
L++ A+ L+ATGEF+ L+AKGL QRKAA V SPF QACF+NP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTATGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQ 1241
Query: 810 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--------- 658
GSLE+L+WG+TPS+GTG FDI+Y+GKG+E A+ +VYTLL V P+
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDG 1301
Query: 657 -----------DPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRML 511
D + +KS S TK R +FS I+K+SQ LK+ML
Sbjct: 1302 GMDGTSLARRLDRLDDLDKKSCKSELSFTKLR---------SYFSFNDIKKLSQSLKQML 1352
Query: 510 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPDH-NETCFFLVRTDG 337
+Y + +L+ DK A+ ALQFHPR +KIG G +IK+G H ++ CF +VR+D
Sbjct: 1353 SKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEYEGSRCFMVVRSDD 1412
Query: 336 TEEDFSYNKCIHHALEIIAPEKASAYR 256
T EDFSY KC+ HALE+IAP+KA R
Sbjct: 1413 TVEDFSYRKCMQHALELIAPQKAKTSR 1439
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Solanum lycopersicum] gi|723724576|ref|XP_010325435.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Solanum lycopersicum]
Length = 1446
Score = 1454 bits (3764), Expect = 0.0
Identities = 784/1467 (53%), Positives = 997/1467 (67%), Gaps = 41/1467 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++ +I Q V L+ I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPDGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKVSDRTSA-- 117
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMF---VNKSSDWVLASDYWD 4003
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E V K++ LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWD 172
Query: 4002 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 3826
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSH 232
Query: 3825 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 3646
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 3645 XXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 3466
+GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSL 342
Query: 3465 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 3286
NW ++ C+ M+ ++G V RNG V I D LQKGD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPS 402
Query: 3285 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 3106
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++S +EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALK 462
Query: 3105 KQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 2929
+QL++GQ+G+N LE GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 2928 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2749
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++HN
Sbjct: 523 NICYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHN 582
Query: 2748 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEV 2569
LD L A Q VLCEWLS RG D+ SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2568 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2389
LLM+ N+D L + +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2388 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2209
+ ++NS +AMLKAGSKGNL KL QH+MCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2208 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2029
+ K H E SYIP +V +S+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2028 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 1888
MFFMRDL GYDGTVR+ +GN +VQF+Y TK +A ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLA 882
Query: 1887 XXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 1708
ALDQPVS LE SPLL LKK+L+ G TG K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFE 942
Query: 1707 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSV 1528
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RR+KLRSV
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSV 1002
Query: 1527 IDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 1351
+DAL M + K+ LP LHIT K CS + +K+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 1350 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKF 1171
LRD+V P LL+TVIKGF FKKVDILWK P+ KS++ GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKF 1121
Query: 1170 WSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 991
W+ L+D CL+IR++IDWERS+PDD+HD + AYGIDV W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 990 LIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 811
L++ A+ L+ TGEF+ L+AKGL QRKAA V SPF QACF+NP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQ 1241
Query: 810 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--------- 658
GSLE+L+WG+TPS+GTG FDI+Y+GKG+E A+ +VYTLL V P+
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDG 1301
Query: 657 -----------DPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRML 511
D + +KS S TK R +FS I+K+SQ LK+ML
Sbjct: 1302 GMDGMSLVRRLDRLDDLDKKSCKSELSFTKLR---------SYFSFNDIKKLSQSLKQML 1352
Query: 510 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPD-HNETCFFLVRTDG 337
+Y + +L+ DK A+ ALQFHPR +KIG G +IK+G H + CF +VR+D
Sbjct: 1353 SKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDD 1412
Query: 336 TEEDFSYNKCIHHALEIIAPEKASAYR 256
T EDFSY KC+ HALE+IAP+KA R
Sbjct: 1413 TVEDFSYRKCMQHALELIAPQKAKTSR 1439
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 1399 bits (3622), Expect = 0.0
Identities = 760/1466 (51%), Positives = 968/1466 (66%), Gaps = 38/1466 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
MDN+ Q V S L I ++ ++ED KIS I VNE++D LG+P + +C T
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSC-QCST 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 4177
CGAK++K+CEGHFG+I FPFTIL+PYF++EV QILNKICPGCKS R+G VK ADS S
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119
Query: 4176 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNK----SSDWVLASDY 4009
+ K C+YC S YP MKFKVSSKD+F KTAII E++E K S VL DY
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDY 179
Query: 4008 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 3829
WD IPKDP Q L N+RVLS AQV+ +LKD+ P ++ V+R +S FLN L VTPN+
Sbjct: 180 WDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNN 239
Query: 3828 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 3667
HRV E GQ + D+ ++ Y+KLVDFRGT NELS RVLD K SK+RSEK ++
Sbjct: 240 HRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD 299
Query: 3666 KIYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 3487
+ GLK IKE+LLGKRT+HSFRM+VVGDP+++++EIG+P IAE +L
Sbjct: 300 SASKMS----------GLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELL 349
Query: 3486 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 3307
IS+HLN WNW K+ C L EKG V R G + + Q GD I R L DGDIV
Sbjct: 350 ISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIV 409
Query: 3306 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 3127
LINRPPSIHQHS+IALSVK+LP+NSV SINPL CSP RGDFDGDCLHGY+PQSV+SRVEL
Sbjct: 410 LINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVEL 469
Query: 3126 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPA 2947
+ELV+L++QL+N Q GRN +E+GVLLN ++QQL+MFCP PA
Sbjct: 470 SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 529
Query: 2946 IIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIF 2770
IIK P + +WTGKQLFS+LLPP F + + NGV I GEL+SSS GSAWL D N+F
Sbjct: 530 IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 589
Query: 2769 QCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEE 2590
L++ + +ALDFL A QEVLCEWLS RG D+ SRKN++DE+ GL
Sbjct: 590 SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLV 649
Query: 2589 AEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLW 2410
AE+ L+V +++ L+ S + N++ + + ++Q A Q+S+ A K
Sbjct: 650 AEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFR 709
Query: 2409 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2230
D+QNLVY++ +NS +AMLKAGSKGNL KL Q +CLGLQHSL PLSF IP +LSCA+W
Sbjct: 710 DIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAW 769
Query: 2229 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2050
N QK + + + E ++SYIP +V NS+L GLNPLECFV S+T+RDSSF +AD+
Sbjct: 770 NKQKVPGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLP 827
Query: 2049 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-----------MGGHP 1903
GTLTRRLMFFMRDL YDGTVR+ +GN +VQF+Y + S S MGG P
Sbjct: 828 GTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQP 887
Query: 1902 VGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRW 1723
VG ALDQP+S+LEPSPLL LK+VL+CG++KST ++ SLFLS +L +
Sbjct: 888 VGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKR 947
Query: 1722 ANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRV 1543
+GFEYGALEVK+HLE LLFSDIVS V I F SPW CHFH+ +E+AK+R +
Sbjct: 948 KHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSL 1007
Query: 1542 KLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGF 1363
K S+IDALYM +SK+ LP L ITSK C VD K+ CI+ ++ S K
Sbjct: 1008 KPHSIIDALYMKCNSARAESKINLPDLQITSKDCF-VDMEKEDSDCFCITVSIVNSKKSC 1066
Query: 1362 SDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQ 1183
LD +RD+V P LL V+KG + KKVDILW P+ K G +LRV S C
Sbjct: 1067 IQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCG 1125
Query: 1182 KTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTI 1003
K FW +LMD CL+I ++IDWERSHPD+IHD YGID GW+ F+NSL SAISD GKT+
Sbjct: 1126 KKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTV 1185
Query: 1002 LPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQM 823
LPEHL++ A+CLSATGEF+ LNAKG+A Q++ ++ SPF Q CFS+P C +KA K
Sbjct: 1186 LPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVA 1245
Query: 822 DRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLL----STHVARTKPDD 655
D L GSL+AL+WG+ PSVG+G HFDI+Y+ KGHE A+P D+Y LL S H K
Sbjct: 1246 DNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKV 1305
Query: 654 PM-------KQFSEKSIVSSHFNTKTRKSL--LTKMASQHFSEVG-IRKISQRLKRMLKE 505
P+ K ++ + +K KSL ++K + F + I+K+S+RLK +L++
Sbjct: 1306 PITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQK 1365
Query: 504 YPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPD-HNETCFFLVRTDGTEE 328
YP+N +LS DK+T + AL FHPR ++KIG G +IKV H HN CF LVRTDGTEE
Sbjct: 1366 YPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEE 1425
Query: 327 DFSYNKCIHHALEIIAPEKASAYRSR 250
DFSY+KC+H ALEII P +A +Y+SR
Sbjct: 1426 DFSYHKCVHGALEIIDPRRARSYQSR 1451
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 1393 bits (3606), Expect = 0.0
Identities = 759/1468 (51%), Positives = 968/1468 (65%), Gaps = 40/1468 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
MDN+ Q V S L I ++ ++ED KIS I VNE++D LG+P + +C T
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSC-QCST 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 4177
CGAK++K+CEGHFG+I FPFTIL+PYF++EV QILNKICPGCKS R+G VK ADS S
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119
Query: 4176 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNK----SSDWVLASDY 4009
+ K C+YC S YP MKFKVSSKD+F KTAII E++E K S VL DY
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDY 179
Query: 4008 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 3829
WD IPKDP Q L N+RVLS AQV+ +LKD+ P ++ V+R +S FLN L VTPN+
Sbjct: 180 WDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNN 239
Query: 3828 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 3667
HRV E GQ + D+ ++ Y+KLVDFRGT NELS RVLD K SK+RSEK ++
Sbjct: 240 HRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD 299
Query: 3666 KIYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 3487
+ GLK IKE+LLGKRT+HSFRM+VVGDP+++++EIG+P IAE +L
Sbjct: 300 SASKMS----------GLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELL 349
Query: 3486 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 3307
IS+HLN WNW K+ C L EKG V R G + + Q GD I R L DGDIV
Sbjct: 350 ISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIV 409
Query: 3306 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 3127
LINRPPSIHQHS+IALSVK+LP+NSV SINPL CSP RGDFDGDCLHGY+PQSV+SRVEL
Sbjct: 410 LINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVEL 469
Query: 3126 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPA 2947
+ELV+L++QL+N Q GRN +E+GVLLN ++QQL+MFCP PA
Sbjct: 470 SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 529
Query: 2946 IIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIF 2770
IIK P + +WTGKQLFS+LLPP F + + NGV I GEL+SSS GSAWL D N+F
Sbjct: 530 IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 589
Query: 2769 QCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEE 2590
L++ + +ALDFL A QEVLCEWLS RG D+ SRKN++DE+ GL
Sbjct: 590 SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLV 649
Query: 2589 AEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLW 2410
AE+ L+V +++ L+ S + N++ + + ++Q A Q+S+ A K
Sbjct: 650 AEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFR 709
Query: 2409 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2230
D+QNLVY++ +NS +AMLKAGSKGNL KL Q +CLGLQHSL PLSF IP +LSCA+W
Sbjct: 710 DIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAW 769
Query: 2229 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2050
N QK + + + E ++SYIP +V NS+L GLNPLECFV S+T+RDSSF +AD+
Sbjct: 770 NKQKVPGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLP 827
Query: 2049 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-----------MGGHP 1903
GTLTRRLMFFMRDL YDGTVR+ +GN +VQF+Y + S S MGG P
Sbjct: 828 GTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQP 887
Query: 1902 VGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRW 1723
VG ALDQP+S+LEPSPLL LK+VL+CG++KST ++ SLFLS +L +
Sbjct: 888 VGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKR 947
Query: 1722 ANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRV 1543
+GFEYGALEVK+HLE LLFSDIVS V I F SPW CHFH+ +E+AK+R +
Sbjct: 948 KHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSL 1007
Query: 1542 KLRSVIDALYMNNKFTGVKSKVILPKLHITS--KVCSEVDTRKKSDSVICISAALSESLK 1369
K S+IDALYM +SK+ LP L ITS + C VD K+ CI+ ++ S K
Sbjct: 1008 KPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCF-VDMEKEDSDCFCITVSIVNSKK 1066
Query: 1368 GFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEY 1189
LD +RD+V P LL V+KG + KKVDILW P+ K G +LRV S
Sbjct: 1067 SCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGD 1125
Query: 1188 CQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGK 1009
C K FW +LMD CL+I ++IDWERSHPD+IHD YGID GW+ F+NSL SAISD GK
Sbjct: 1126 CGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGK 1185
Query: 1008 TILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMG 829
T+LPEHL++ A+CLSATGEF+ LNAKG+A Q++ ++ SPF Q CFS+P C +KA K
Sbjct: 1186 TVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRA 1245
Query: 828 QMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLL----STHVARTKP 661
D L GSL+AL+WG+ PSVG+G HFDI+Y+ KGHE A+P D+Y LL S H K
Sbjct: 1246 VADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKV 1305
Query: 660 DDPM-------KQFSEKSIVSSHFNTKTRKSL--LTKMASQHFSEVG-IRKISQRLKRML 511
P+ K ++ + +K KSL ++K + F + I+K+S+RLK +L
Sbjct: 1306 KVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFIL 1365
Query: 510 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPD-HNETCFFLVRTDGT 334
++YP+N +LS DK+T + AL FHPR ++KIG G +IKV H HN CF LVRTDGT
Sbjct: 1366 QKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGT 1425
Query: 333 EEDFSYNKCIHHALEIIAPEKASAYRSR 250
EEDFSY+KC+H ALEII P +A +Y+SR
Sbjct: 1426 EEDFSYHKCVHGALEIIDPRRARSYQSR 1453
>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 1361 bits (3522), Expect = 0.0
Identities = 695/1106 (62%), Positives = 840/1106 (75%), Gaps = 18/1106 (1%)
Frame = -3
Query: 3567 FRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNG 3388
FR VVVGDPRI+V+EIGLP +IA+N+L+SD++ +WNW KLE CC+ ML+ G FSV R+G
Sbjct: 1 FRTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDG 60
Query: 3387 QRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLI 3208
Q+ C+ S DML+ GDSI R L+DGDIVLINRPPSIHQHSLIALSVKILPINSV SINPL
Sbjct: 61 QKTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLT 120
Query: 3207 CSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXX 3028
CSPLRGDFDGDCLHGYVPQSVN+RVEL ELV+L+KQLVNGQ G+N
Sbjct: 121 CSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLI 180
Query: 3027 LENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSR-SSLWTGKQLFSLLLPPDFEFAYESN 2851
++GV LNK E+QQLQMF IP+LPAII+ TSR +S WTGKQLFS LLP DFEF+ SN
Sbjct: 181 SQDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASN 240
Query: 2850 GVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXX 2671
GV I+ GELVS S GS+WL D+ EN+FQCLLRH ++ LD L+A QEVLCEWLSRRG
Sbjct: 241 GVGIKHGELVSFSDGSSWLRDSGENLFQCLLRHCPEKTLDILHAAQEVLCEWLSRRGLSV 300
Query: 2670 XXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFL 2491
D +SRKNLLD+I GLEEAEK+S++SLLMVG N+ L+E+S+E+EDM K
Sbjct: 301 SLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLMVGHNQRFLIENSEEDEDMLKS- 359
Query: 2490 KERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQ 2311
KE + + QQT AE QASL ASKSV DMQNL+Y + G NS +AMLKAGSKGNLQKLFQ
Sbjct: 360 KEHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYAGDTNSLLAMLKAGSKGNLQKLFQ 419
Query: 2310 HSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYL 2131
HSMCLGLQHSL P+SF +P LSCASWN+QK++ S+++ G++EI DSYIPCT+V++SYL
Sbjct: 420 HSMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLYRLDGTREILDSYIPCTVVSSSYL 479
Query: 2130 AGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQF 1951
GLNPLE F+ SLTTRDSSF G ADVSGTLTR+LMFFMRD+I GYDGTVR+ +G+ +VQF
Sbjct: 480 MGLNPLESFLHSLTTRDSSFSGQADVSGTLTRKLMFFMRDIITGYDGTVRNSYGSQIVQF 539
Query: 1950 NYCTKDLS----DASMGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGV 1783
+Y T D+S D MGGHPVG ALDQPVS LEPSPL+ LKKVLDCGV
Sbjct: 540 DYGTGDMSAVNSDVLMGGHPVGSLAACAISEAAYSALDQPVSALEPSPLIALKKVLDCGV 599
Query: 1782 KKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXX 1603
K +TG KSASLFLS RL +W NGFE+GALEVKDH+ESLLFS++VSEV I F
Sbjct: 600 KNNTGGKSASLFLSRRLGKWVNGFEFGALEVKDHMESLLFSEVVSEVTISFSTERRTNIS 659
Query: 1602 XSPWACHFHINKEVAKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTR 1423
PW C+F INKEV +R +KL SV+ L N T K K+ LP L I +K CSE D
Sbjct: 660 --PWVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLKLPNLLIENKDCSEADFH 717
Query: 1422 KKSDSVICISAALSE---------SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDIL 1270
+ S S ICIS A+S+ SLK + LD LR+MV PVLL+TV+KGFPEFKKVDIL
Sbjct: 718 EDS-SRICISVAVSQNELSNLHFGSLKEYEILDYLRNMVIPVLLRTVVKGFPEFKKVDIL 776
Query: 1269 WKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHD 1090
WK E + + +K GEP++RV SE C++ +FW+IL++K LRIR++IDW+RSHPDD+HD
Sbjct: 777 WKDEQSRSRFSKCSSGEPYVRVFMSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHD 836
Query: 1089 CSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRK 910
EA+GID W CFVNSL+SAIS+TGKTILPEHLI TANCLS TGEF++LNAKGLA+QRK
Sbjct: 837 YGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRK 896
Query: 909 AANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGK 730
A + SPF QACFSNPSDC +KAAKMGQMD LQGS+++L+WGQTP +GTG FDI+Y+GK
Sbjct: 897 EATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGK 956
Query: 729 GHEPAKPTDVYTLLSTHVARTKPDDPMK---QFSEKSIVSSHFNTKTRKSLLTKMASQHF 559
GHEP+KPTDVY+LL++ V KP + +K QF+ + S + T RK L M S
Sbjct: 957 GHEPSKPTDVYSLLNSQVGFAKPSEKIKLPVQFTSGNDQSQNLKTNGRKRFLAGMKSLRS 1016
Query: 558 SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHP 379
+E IR++S LKRML EY + +L GEDK+ A++ALQ+HPRWE+K G G ++IKVGRHP
Sbjct: 1017 AEDEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQYHPRWEEKTGAGTVEIKVGRHP 1076
Query: 378 DHNET-CFFLVRTDGTEEDFSYNKCI 304
DH E+ CFF+V+TDGTEED SY K I
Sbjct: 1077 DHKESRCFFVVKTDGTEEDISYRKSI 1102
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 1348 bits (3489), Expect = 0.0
Identities = 729/1477 (49%), Positives = 958/1477 (64%), Gaps = 48/1477 (3%)
Frame = -3
Query: 4536 SMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECG 4357
SM+N+L+ + + +A + I N+ +D D K+S I +EVSD LG P + C
Sbjct: 3 SMENDLYEAEQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFS-NHCT 61
Query: 4356 TCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRG-NVKKADSASS 4180
TCGA + K CEGHFG+INFP+ IL+PYF+SEV QILNKICPGCKS+R+ +K A+S S
Sbjct: 62 TCGAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRKDLRIKGANSVSK 121
Query: 4179 HHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASDY 4009
+Q K C+YC G S YP M FK+SSKD+F K+AII EV E M V K L SDY
Sbjct: 122 VNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDY 181
Query: 4008 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 3829
WD IPKD Q + N+RVLS +QV +LKDV P ++ V +SIFLN VTPNS
Sbjct: 182 WDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNS 241
Query: 3828 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 3667
HRV E GQR+ D+ T++Y+KL DFRG NELS+ VL+ K+SK+ EK SN +
Sbjct: 242 HRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLEKPSNEE 301
Query: 3666 K--IYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAEN 3493
+ ++ SGL+ +K+++LGKR DH FRMV+ G+P +K++EI +P +AE
Sbjct: 302 SALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAER 361
Query: 3492 VLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGD 3313
+ I++ LN WN +L+ CC+ L EKG V R G+ V I + LQ GD+I R L +GD
Sbjct: 362 LQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGD 421
Query: 3312 IVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRV 3133
I+LINRPPSIHQHSLIALSVK+LP++SV SINPLICSP RGDFDGDCLHGYVPQS+ +RV
Sbjct: 422 IILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARV 481
Query: 3132 ELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVL 2953
EL ELVSL++QL+NGQ GRN E+GVLLN ++QQL+MFCP
Sbjct: 482 ELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPF 541
Query: 2952 PAIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSEN 2776
PAI+K P RSS+WTGKQL S+L P +F++ + N V IR GEL+SSS GS WL D N
Sbjct: 542 PAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGN 601
Query: 2775 IFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGL 2596
+FQ L++H + + LDFL A QEVLCEWLS RG D+ S+KN++DEI GL
Sbjct: 602 LFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGL 661
Query: 2595 EEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSV 2416
+E E+ LMV N D LV +E + E++ ++Q A QAS+ + K V
Sbjct: 662 QEIEQTCNFKQLMVDSNHDFLVGHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQV 721
Query: 2415 LWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCA 2236
D+QNL+YK+ +NS + M KAGSKGNL KL QHS+CLGLQHSL PLSF P +LSCA
Sbjct: 722 FRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCA 781
Query: 2235 SWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHAD 2056
+WN+QKS+ K + E + +YIP +V +S++ GLNPLE FV S+T+RDSSF +AD
Sbjct: 782 AWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNAD 841
Query: 2055 VSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-CTKDLSDAS------------- 1918
+ GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y KD S +
Sbjct: 842 LPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTI 901
Query: 1917 ---MGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLF 1747
+GG PVG ALDQPVS+LE SPLL LK+V++CG K+S ++ +LF
Sbjct: 902 PEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLF 961
Query: 1746 LSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINK 1567
LS +L R +G EY ALEVK+HLE L FSDIV+ V I F +PW CHFH+ K
Sbjct: 962 LSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCK 1021
Query: 1566 EVAKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITS--KVCSEVDTRKKSDSVICIS 1393
+ KRR++K++S+ID+L+M+ K+ LP + ITS + CS +D + D+ CI+
Sbjct: 1022 DTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDT-FCIT 1080
Query: 1392 AALSE-SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEP 1216
+ E S +LD++RDMV P LL+ VIKGFPE KKVDILWK K K GE
Sbjct: 1081 VTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGEL 1140
Query: 1215 FLRVVTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSL 1036
+LRV S TK W +LM+ CL+I ++IDW RSHPD+I+ AYGID GW+ F+N+L
Sbjct: 1141 YLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNL 1200
Query: 1035 HSAISDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSD 856
SAISDTGKTIL EHL+V ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS
Sbjct: 1201 KSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSA 1260
Query: 855 CLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV 676
VKAAK G D LQG+++AL+WG+ P +GTG FDI+Y+ K A+P DVY LL + +
Sbjct: 1261 SFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSI 1320
Query: 675 ARTKPDDPMKQFSEKSIVSSHFN-----------TKTRKSLLTKMAS---QHFSEVGIRK 538
+ K D + + S + ++ K + TK S + + I++
Sbjct: 1321 SSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWRELLTLDDIQR 1380
Query: 537 ISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDH-NETC 361
+S+ L+ +L +YP++ +LS D +T + AL FHPR ++KIG+G +IKVG HP+H N C
Sbjct: 1381 LSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARC 1440
Query: 360 FFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 250
F LVRTDGT DFSY+KC+ ALEIIAP +A +Y+S+
Sbjct: 1441 FSLVRTDGTIVDFSYHKCVLGALEIIAPHRAKSYKSK 1477
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 1348 bits (3488), Expect = 0.0
Identities = 736/1461 (50%), Positives = 950/1461 (65%), Gaps = 30/1461 (2%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
MDN L+ + V S + IHLN+ + ED IS I V EV+D LGLP + +C T
Sbjct: 1 MDNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSF-QCST 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 4174
CGA+ K CEGHFG I FP TIL+PY++SEVAQILNKICPGCKSIR+ K + H
Sbjct: 60 CGAEKLKCCEGHFGDIKFPCTILHPYYLSEVAQILNKICPGCKSIRQNLRAKVSYRTLHV 119
Query: 4173 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 3994
P CR NG S +PRMKFKVS++++F ++AIIAE ++ +L +DYWD IP
Sbjct: 120 DPXDCRI-NGSS-INFPRMKFKVSTRELFKRSAIIAE---------ANGILPADYWDFIP 168
Query: 3993 KDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVRE 3814
KD Q + NKRVLS AQV+ +LKDV P+ +E +V + NS+F+ S LVTPN HRV E
Sbjct: 169 KDAQQDESCMKPNKRVLSHAQVHYLLKDVDPKFIEKIVPKTNSLFMGSFLVTPNCHRVTE 228
Query: 3813 F------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEK 3652
GQR+ DE T+ YRKLVDF+G NEL +RVLD K+SK+ SEK S ++
Sbjct: 229 VMHSFSNGQRLMFDERTRAYRKLVDFKGVANELGSRVLDCLKISKLNSEKPSKDFISAQQ 288
Query: 3651 QXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHL 3472
+ SGL+ IK+++LGKR+DH FR VVVGDP IK++EIG+P QIAE + IS++L
Sbjct: 289 KNIKDDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENL 348
Query: 3471 NIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRP 3292
N WN KL+ C L KG V R G V + D LQ GD+I R L DGDIVLINRP
Sbjct: 349 NRWNIEKLDASCNLRLMVKGEMHVRRKGSLVWVRRTDELQMGDTIYRPLSDGDIVLINRP 408
Query: 3291 PSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVS 3112
PSIHQHSLIALSVKILPI SV SINPL CSP RGDFDGDCLHGY+PQS ++RVEL ELV+
Sbjct: 409 PSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVA 468
Query: 3111 LDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIK-P 2935
LDKQL+NGQ GRN +E+G LLN E+QQL+MFC + PA+IK P
Sbjct: 469 LDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAP 528
Query: 2934 TSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLR 2755
+ S WTGKQ+FS+LLP DF++ + S+GV I+ GEL+SS GS+WL D N+FQ L+
Sbjct: 529 SLNSHAWTGKQVFSMLLPSDFDYDFASDGVYIKNGELLSSE-GSSWLRDTGGNLFQSLVN 587
Query: 2754 HNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLS 2575
H + + LDFL A QEVLCEWLS RG D+ SR NL++EI GL+EAE+
Sbjct: 588 HFQGQVLDFLFAAQEVLCEWLSMRGLSVSLADLYLASDSGSRNNLMEEISCGLQEAEQAC 647
Query: 2574 EVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNL 2395
L+V ++ L+ ++EN F E ++Q A Q A K + D+Q+L
Sbjct: 648 IFKQLLVDNCQEFLMGCAEENRSPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSL 707
Query: 2394 VYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKS 2215
+K+ G +NS + MLKAGSKGNLQKL QHSMCLGLQHSL PLSF IP +LSCA+WN+QK+
Sbjct: 708 AHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKA 767
Query: 2214 YYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTR 2035
+ K G+ E +SYIP +V +S+L GLNPLECFV S+T+RDSSF G+AD+ GTLTR
Sbjct: 768 CSLIQKVEGTYECVESYIPSAVVESSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTR 827
Query: 2034 RLMFFMRDLINGYDGTVRSCHGNHVVQFNY-CTKDLSDAS-------------MGGHPVG 1897
+LMF MRDL YDGTVR+ +GN +VQF+Y D SD++ +GG PVG
Sbjct: 828 KLMFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSYAKSTTACDGIGGQPVG 887
Query: 1896 XXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWAN 1717
ALDQPVS+LE SPLL LK +L+CG KKS+ ++ SLFLS +L R +
Sbjct: 888 SLSACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTMSLFLSEKLGRRRH 947
Query: 1716 GFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKL 1537
GFEYGALEVK+HL L FSDIVS V I F SPW HFHI KE+ ++RR+K+
Sbjct: 948 GFEYGALEVKNHLVGLTFSDIVSTVMIIFSSQNNSQKRFSPWVTHFHICKEIVRKRRLKV 1007
Query: 1536 RSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFSD 1357
SV+D+LY + KV+L L ITSK CS T D CI+ + E+ K S+
Sbjct: 1008 HSVVDSLYARCNSARPELKVVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSE 1067
Query: 1356 -LDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQK 1180
LDI RD+V P LL TV+KGF E KKVDILW P K GE +LRV S +
Sbjct: 1068 QLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGR 1127
Query: 1179 TKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTIL 1000
+ WS+LMD CL+I N+IDW RSHPD++HD AYGID GW+ F+N+L +A +D GK IL
Sbjct: 1128 RRLWSMLMDNCLQIMNLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDIL 1187
Query: 999 PEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMD 820
P+HLI+ A+CLSATGEF+ LNAKG+A+Q+ A+V SPF QACFS+P C +KAAK G +D
Sbjct: 1188 PQHLILVADCLSATGEFVGLNAKGIAQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVD 1247
Query: 819 RLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--DPMK 646
L GS+EAL+WG TP GTG FDI+Y+ +G +KP + Y LL + ++ + + + K
Sbjct: 1248 ELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSSENAFETSK 1307
Query: 645 QFSEKSIVS---SHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGE 475
++ ++ + + +++ + ++ + I+K +Q LKR+L++Y +N L+
Sbjct: 1308 AWNNNTLDKCDVTSIGLEKSENVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEG 1367
Query: 474 DKSTAIKALQFHPRWEDKIGTGVLDIKV---GRHPDHNETCFFLVRTDGTEEDFSYNKCI 304
DKS AL FHP DK+G+GV DIKV + N CF LVR D TEEDFSY+KC+
Sbjct: 1368 DKSILKMALHFHPHKVDKMGSGVQDIKVHYIEKRKHENARCFMLVRIDRTEEDFSYHKCV 1427
Query: 303 HHALEIIAPEKASAYRSRKQN 241
ALEI+APE+A +YRS+ N
Sbjct: 1428 LGALEIVAPERAKSYRSKWMN 1448
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 1337 bits (3461), Expect = 0.0
Identities = 720/1480 (48%), Positives = 950/1480 (64%), Gaps = 50/1480 (3%)
Frame = -3
Query: 4539 ASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATEC 4360
ASM+++ Q ++A L I ++ +D D +S I +EVSD LG P + C
Sbjct: 2 ASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFS-NHC 60
Query: 4359 GTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSAS 4183
TC A++ K+CEGHFG+I FP+TIL+P+F+SEV ILNKICPGCKSIR+ +K A+S +
Sbjct: 61 TTCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIA 120
Query: 4182 SHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASD 4012
+ K C+YC G S YP M+FK++SK++F K+AI+ EV E M V K L +D
Sbjct: 121 RLLETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPAD 180
Query: 4011 YWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPN 3832
YWD IPKD Q + +RVLS AQV ++LKDV P ++ ++ +SIFLN VTPN
Sbjct: 181 YWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPN 240
Query: 3831 SHRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNL 3670
SHRV E QR+ DE T++Y+KLVDFRG NELS+ VL+ K+SK+ EK S
Sbjct: 241 SHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTE 300
Query: 3669 QK--IYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAE 3496
I + SGL+ +K+++LGKR DH FRMV+ G+P +K++EIG+P +AE
Sbjct: 301 DSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAE 360
Query: 3495 NVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDG 3316
+ I++ LN WN +L+ CC + EKG + R G+ V I + +Q GD+I R L DG
Sbjct: 361 KLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDG 420
Query: 3315 DIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSR 3136
D VLINRPPSIHQHSLIALSVK+LP+NSV SINPLICSP RGDFDGDCLHGYVPQS+N+R
Sbjct: 421 DTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR 480
Query: 3135 VELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPV 2956
VEL+ELVSLD+QL+NGQ GRN E+GVLLN ++QQL+MFCP
Sbjct: 481 VELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSP 540
Query: 2955 LPAIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSE 2779
LPAI+K P + +WTGKQLFS+L PP+F++ + +GV I G+L+ SS GS+WL D
Sbjct: 541 LPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADG 600
Query: 2778 NIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYG 2599
N+FQ L++H + + LDFL+A QEVLCEWLS RG DT+S+KN++DEI YG
Sbjct: 601 NLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYG 660
Query: 2598 LEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKS 2419
L+EAE+ LMV +D L + +E E++ ++Q A QAS+ + K
Sbjct: 661 LQEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQ 720
Query: 2418 VLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSC 2239
V D+QNL+YK+ +NS M KAGSKGNL KL QHSMCLGLQHSL PLSF P +LSC
Sbjct: 721 VFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSC 780
Query: 2238 ASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHA 2059
A+WN+QKS+ K + E + YIP +V +S++ GLNPLECFV S+TTRD+SF +A
Sbjct: 781 AAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA 840
Query: 2058 DVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-----------CTKDLSDA--- 1921
D+ GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y C L
Sbjct: 841 DLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSS 900
Query: 1920 ---SMGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASL 1750
+GG PVG ALDQP+S+LE SPLL LK+VL+CG K+S ++ SL
Sbjct: 901 LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL 960
Query: 1749 FLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHIN 1570
FLSG+L R +G EYGALEVK+HLE L+F DIVS V I F SPW CHFH+
Sbjct: 961 FLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVF 1020
Query: 1569 KEVAKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISA 1390
K++ RRR+ + S+IDAL+M+ K+ LP + +TSK CS +D + D+ CI+
Sbjct: 1021 KDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDT-FCITV 1079
Query: 1389 ALSESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFL 1210
+ E +LD+++DMV P LL+ V+KGFPE KKV+ILW + P S K GE +L
Sbjct: 1080 TIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYL 1139
Query: 1209 RVVTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHS 1030
RV S TK WS+LM+ CL++ +IIDW RSHPD+I+ A+GID GW+ F+N++ S
Sbjct: 1140 RVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKS 1199
Query: 1029 AISDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCL 850
AISDTGK+IL EHL + ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS C
Sbjct: 1200 AISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACF 1259
Query: 849 VKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVAR 670
VKAAK G D LQG+++ L+WG+ P +GTG FDIVY+ K E A+P DVY LL +
Sbjct: 1260 VKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINS 1319
Query: 669 TKPD-----------------DPMKQFSEKSIVS--SHFNTKTRKSLLTKMASQHFSEVG 547
K D P K S+ TKTR L ++
Sbjct: 1320 KKQDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLN-----D 1374
Query: 546 IRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNE 367
++++ + LK +L++YP++ ++S D T + AL FHP +KIG+G +IKVG HPDH +
Sbjct: 1375 VQRLERNLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVGHHPDHAD 1434
Query: 366 T-CFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 250
+ CFFLVRTD T DFSY KC+ ALEIIAP +A +Y+S+
Sbjct: 1435 SRCFFLVRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSK 1474
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 1331 bits (3445), Expect = 0.0
Identities = 717/1478 (48%), Positives = 947/1478 (64%), Gaps = 50/1478 (3%)
Frame = -3
Query: 4533 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 4354
M+++ Q ++A L I ++ +D D +S I +EVSD LG P + C T
Sbjct: 1 MESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFS-NHCTT 59
Query: 4353 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 4177
C A++ K+CEGHFG+I FP+TIL+P+F+SEV ILNKICPGCKSIR+ +K A+S +
Sbjct: 60 CDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIARL 119
Query: 4176 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASDYW 4006
+ K C+YC G S YP M+FK++SK++F K+AI+ EV E M V K L +DYW
Sbjct: 120 LETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYW 179
Query: 4005 DIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 3826
D IPKD Q + +RVLS AQV ++LKDV P ++ ++ +SIFLN VTPNSH
Sbjct: 180 DFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSH 239
Query: 3825 RVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK 3664
RV E QR+ DE T++Y+KLVDFRG NELS+ VL+ K+SK+ EK S
Sbjct: 240 RVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDS 299
Query: 3663 --IYEKQXXXXXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENV 3490
I + SGL+ +K+++LGKR DH FRMV+ G+P +K++EIG+P +AE +
Sbjct: 300 ALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKL 359
Query: 3489 LISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDI 3310
I++ LN WN +L+ CC + EKG + R G+ V I + +Q GD+I R L DGD
Sbjct: 360 QIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDT 419
Query: 3309 VLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVE 3130
VLINRPPSIHQHSLIALSVK+LP+NSV SINPLICSP RGDFDGDCLHGYVPQS+N+RVE
Sbjct: 420 VLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVE 479
Query: 3129 LTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLP 2950
L+ELVSLD+QL+NGQ GRN E+GVLLN ++QQL+MFCP LP
Sbjct: 480 LSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLP 539
Query: 2949 AIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENI 2773
AI+K P + +WTGKQLFS+L PP+F++ + +GV I G+L+ SS GS+WL D N+
Sbjct: 540 AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 599
Query: 2772 FQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLE 2593
FQ L++H + + LDFL+A QEVLCEWLS RG DT+S+KN++DEI YGL+
Sbjct: 600 FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 659
Query: 2592 EAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVL 2413
EAE+ LMV +D L + +E E++ ++Q A QAS+ + K V
Sbjct: 660 EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 719
Query: 2412 WDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCAS 2233
D+QNL+YK+ +NS M KAGSKGNL KL QHSMCLGLQHSL PLSF P +LSCA+
Sbjct: 720 RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 779
Query: 2232 WNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADV 2053
WN+QKS+ K + E + YIP +V +S++ GLNPLECFV S+TTRD+SF +AD+
Sbjct: 780 WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 839
Query: 2052 SGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-----------CTKDLSDA----- 1921
GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y C L
Sbjct: 840 PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 899
Query: 1920 -SMGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFL 1744
+GG PVG ALDQP+S+LE SPLL LK+VL+CG K+S ++ SLFL
Sbjct: 900 DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 959
Query: 1743 SGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKE 1564
SG+L R +G EYGALEVK+HLE L+F DIVS V I F SPW CHFH+ K+
Sbjct: 960 SGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVFKD 1019
Query: 1563 VAKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAAL 1384
+ RRR+ + S+IDAL+M+ K+ LP + +TSK CS +D + D+ CI+ +
Sbjct: 1020 IVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDT-FCITVTI 1078
Query: 1383 SESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRV 1204
E +LD+++DMV P LL+ V+KGFPE KKV+ILW + P S K GE +LRV
Sbjct: 1079 VECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLRV 1138
Query: 1203 VTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 1024
S TK WS+LM+ CL++ +IIDW RSHPD+I+ A+GID GW+ F+N++ SAI
Sbjct: 1139 SVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSAI 1198
Query: 1023 SDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 844
SDTGK+IL EHL + ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS C VK
Sbjct: 1199 SDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFVK 1258
Query: 843 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTK 664
AAK G D LQG+++ L+WG+ P +GTG FDIVY+ K E A+P DVY LL + K
Sbjct: 1259 AAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINSKK 1318
Query: 663 PD-----------------DPMKQFSEKSIVS--SHFNTKTRKSLLTKMASQHFSEVGIR 541
D P K S+ TKTR L ++ ++
Sbjct: 1319 QDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLN-----DVQ 1373
Query: 540 KISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET- 364
++ + LK +L++YP++ ++S D T + AL FHP +KIG+G +IKV HPDH ++
Sbjct: 1374 RLERNLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVRHHPDHADSR 1433
Query: 363 CFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 250
CFFLVRTD T DFSY KC+ ALEIIAP +A +Y+S+
Sbjct: 1434 CFFLVRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSK 1471
>ref|XP_015901884.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Ziziphus jujuba]
Length = 1455
Score = 1327 bits (3433), Expect = 0.0
Identities = 711/1442 (49%), Positives = 936/1442 (64%), Gaps = 24/1442 (1%)
Frame = -3
Query: 4503 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 4324
V A + + + + D K+S I N V+D LG+P ++ +C TCGA + K CE
Sbjct: 11 VPLALIDGLTFYVSTQADTEKMSVISIDAANGVTDPRLGVPNPSS-QCSTCGASDLKSCE 69
Query: 4323 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSHHQPKYCRYCN 4147
GHFG I FPFTIL+PYF+SEV QILNKICP CKS R+ VK +S + +HQP C YC
Sbjct: 70 GHFGHIKFPFTILHPYFLSEVVQILNKICPRCKSTRQSRQVKGPNSITGYHQPTGCSYCI 129
Query: 4146 GKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEG 3967
G S MKFKVSSKD+F+++ I EV + + K D+WD IPKD Q
Sbjct: 130 GSSS----TMKFKVSSKDLFSRSTITVEVTDKLLEKFKS---TDDFWDFIPKDAQQEESC 182
Query: 3966 LPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF------GQ 3805
+ NKRVLS AQV+ +L + P ++ V R +S+FLN VTPNSHRV EF GQ
Sbjct: 183 MKPNKRVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQ 242
Query: 3804 RITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIR-SEKLSNLQKIYEKQXXXXXXX 3628
R+ DE T+ Y+KLVDFRG N+L +RVLD K+SK+ S I +++
Sbjct: 243 RLIFDERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPS 302
Query: 3627 XXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWGKL 3448
GL+ IK+++LGKR+DH FRMVVVGDP IK+NEIG+P IAE + +S+ LN WN K
Sbjct: 303 KTCGLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKS 362
Query: 3447 EQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSL 3268
+ C L EKG V RN + V + D L GD+I R L DGDI+LINRPPSIHQHSL
Sbjct: 363 DGCWNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSL 422
Query: 3267 IALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNG 3088
IALSVK+LPI SV SINP+ CSP RGDFDGDCLHGYVPQSV++RVEL ELV+LD+QL N
Sbjct: 423 IALSVKVLPITSVVSINPICCSPFRGDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNR 482
Query: 3087 QDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTSRSSLWT 2911
Q GRN +E+ VLLN E+QQL+MFC +LPAIIK P+ +WT
Sbjct: 483 QSGRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWT 542
Query: 2910 GKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRALD 2731
GKQLFS+LLP F++ SNGVCIR GELVS S GS+WL D N+FQ L+++ LD
Sbjct: 543 GKQLFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLD 602
Query: 2730 FLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSLLMVG 2551
L+A QEVLCEWLS RG D+ SR+ ++DEI +GL+EAE+ L+
Sbjct: 603 ILHAAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNY 662
Query: 2550 GNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSN 2371
E L+ ++++N+ E +L +QT AE Q S+ A K V D+Q+L YK+ G +
Sbjct: 663 FQEFLIENNTEDNQRNVSIQMEYLLYKKQTSAELSQVSIDAFKQVFRDIQSLAYKYGGKD 722
Query: 2370 NSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFH 2191
NS M M KAGSKGNL KL Q+ MCLGLQHSL PLSF +P +LSC +WN+ K+ K
Sbjct: 723 NSLMVMFKAGSKGNLLKLVQNCMCLGLQHSLIPLSFGLPHQLSCIAWNNHKACGLTQKVD 782
Query: 2190 GSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRD 2011
S + SYIPC +V +S+L+GLNPLECFV S+T RDSSF +A++ GTL RRLM+F+RD
Sbjct: 783 ASPKYCKSYIPCAVVESSFLSGLNPLECFVHSVTCRDSSFSDNAELPGTLHRRLMYFLRD 842
Query: 2010 LINGYDGTVRSCHGNHVVQFNYCTKDLSDASMGGHPVGXXXXXXXXXXXXXALDQPVSVL 1831
L YDGTVR+ +GN +VQF Y + +G PVG ALDQP+SVL
Sbjct: 843 LYAAYDGTVRNAYGNQLVQFAYSSDVPVCNVLGSEPVGSLSACAISEAAYSALDQPISVL 902
Query: 1830 EPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIV 1651
E SPLL LK+VL+CG KKS+ ++ SL+LS L R +GFEYGALEVKDHLE L+FS++V
Sbjct: 903 ETSPLLNLKRVLECGSKKSSADQTMSLYLSEELGRQRHGFEYGALEVKDHLEGLIFSEVV 962
Query: 1650 SEVKICFXXXXXXXXXXSPWACHFHINKEVAKRRRVKLRSVIDALYMNNKFTGVKSKVIL 1471
S V I F SPW CHFHI K++ +RRR+ + S+ID+L++ K +SK
Sbjct: 963 STVMIMFSPQTGSKTCLSPWVCHFHICKDILRRRRLNVHSIIDSLHLRCKSAQTESKTNF 1022
Query: 1470 PKLHITSKVCSEVDTRKKSDSVICISAALSESLKGFS-DLDILRDMVKPVLLQTVIKGFP 1294
KL I +K CSE DT +K CI ++ E+ K S +LD+++++V P LL TVIKGF
Sbjct: 1023 SKLQIMNKNCSEADTHEKDKDPCCIVVSIPENSKNSSIELDMVQNVVIPSLLGTVIKGFR 1082
Query: 1293 EFKKVDILWKAEPNHPKSTKRHLGEPFLRVVTSEYCQKTKFWSILMDKCLRIRNIIDWER 1114
E KKVDILWK P K+ GE +LRV S +T+ WS+L++ L I ++IDW R
Sbjct: 1083 EIKKVDILWKDRPKISKAIHGSSGELYLRVSMSGSTSRTRAWSMLLNDSLPIMDMIDWSR 1142
Query: 1113 SHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLIVTANCLSATGEFIALNA 934
SHPD+I + +YGID GW+ F+N+L SAISD GKTILPEHL++ A+ LS TG+F+ LNA
Sbjct: 1143 SHPDNIKEFCVSYGIDAGWKYFLNNLESAISDIGKTILPEHLLLVADSLSVTGQFVGLNA 1202
Query: 933 KGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCH 754
KG+A+Q++ A+ SPF +ACFS P +KAAK G D LQGSL+AL+WG+ P++GTG
Sbjct: 1203 KGIAQQKEHASSSSPFMRACFSTPGAHFIKAAKAGVTDCLQGSLDALAWGKVPAMGTGGL 1262
Query: 753 FDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNTK--------- 601
FDI+Y+GKGHE AKP DVY LL + ++ K ++ +K ++++ S+ ++T+
Sbjct: 1263 FDIIYSGKGHEIAKPADVYDLLGSQISSDKQNE-IKMSTDQNHTSNKYDTQFLYGFGGSV 1321
Query: 600 ----TRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPR 433
T+ + + F+ ++ +S +LK +L +YP++ KL DKST + L FHPR
Sbjct: 1322 SKGFTKLGIAKSFIRKFFTPKDVQNLSHKLKHILHKYPIDHKLDDADKSTLMMTLYFHPR 1381
Query: 432 WEDKIGTGVLDIKVGRHPDH-NETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYR 256
+ K+G G+ DIKV HPDH N CF L+RTDGT EDFSY+KC+H ALEI+AP +A +Y
Sbjct: 1382 RDVKVGAGIQDIKVVNHPDHENSRCFMLLRTDGTSEDFSYHKCVHGALEIVAPVRAKSYW 1441
Query: 255 SR 250
S+
Sbjct: 1442 SK 1443
>ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940107|ref|XP_011014514.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940109|ref|XP_011014516.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940111|ref|XP_011014517.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940113|ref|XP_011014518.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940115|ref|XP_011014519.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940117|ref|XP_011014520.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940119|ref|XP_011014522.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica]
Length = 1488
Score = 1318 bits (3412), Expect = 0.0
Identities = 719/1470 (48%), Positives = 945/1470 (64%), Gaps = 55/1470 (3%)
Frame = -3
Query: 4503 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 4324
V SA + I +L++ D K+S I ++EV++ LGLP ++ +C TCG+++ K CE
Sbjct: 11 VPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSS-QCPTCGSRDLKSCE 69
Query: 4323 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNG 4144
GHFG+INFP+TI++PYF+SEV QILNKICPGCKSIR + + + Q K C+YC G
Sbjct: 70 GHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATELIT-KENPQRKGCKYCAG 128
Query: 4143 KSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDW---VLASDYWDIIPKDPSQAH 3973
S YP MKFKVSSK++F KTAIIAE+ E NK +LA+DYWDI PKD +
Sbjct: 129 NSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNKPQKGFKKILAADYWDIFPKDEQEEE 188
Query: 3972 EGLPA--NKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF---- 3811
E A N+RVLS +QV ++LKDV P ++ + + N+IFLN VTPNSHRV E
Sbjct: 189 EETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRVTEVTHAF 248
Query: 3810 --GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK-IYEKQXXX 3640
GQR+ DE T+ Y+K+VDFRG N LS V+D K SK+ +K N+ + +
Sbjct: 249 SNGQRLIFDERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSN 308
Query: 3639 XXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 3460
SGL+ IK+++LGKR DHSFRMV+VGDP ++++EIG+P IAE + +S+ L WN
Sbjct: 309 DYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQVSESLTAWN 368
Query: 3459 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 3280
W KL C E EKG+ V R G V + L+ GD I R L DGD VLINRPPSIH
Sbjct: 369 WEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIH 428
Query: 3279 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 3100
QHSLIAL VK+LP+ SV +INPL C P R DFDGDCLHGYVPQSV++RVELTELVSLDKQ
Sbjct: 429 QHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQ 488
Query: 3099 LVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSS 2920
L N Q GRN LE+ V L+ E+QQLQMF P +LPA+ P++ +
Sbjct: 489 LTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANAL 548
Query: 2919 LWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDR 2740
+WTG+QL S+LLP F+ + S VCIR G+LVSS GS WL D N+FQ L++H +
Sbjct: 549 VWTGRQLISMLLPVGFDHDFPSCNVCIRDGDLVSSE-GSFWLWDTDGNLFQSLVKHCHGQ 607
Query: 2739 ALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSLL 2560
LDFL A Q VLCEWLS RG D+ SRKN++DEI YGL++A+ + L
Sbjct: 608 VLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHL 667
Query: 2559 MVGGNEDLLVESSDE---NEDMEKFLK--------------ERILIDQQTKAEFFQASLS 2431
MV D L +++E N + +FL ER+ ++Q A Q+S+
Sbjct: 668 MVDSCRDFLTGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVD 727
Query: 2430 ASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPR 2251
A + V D+Q+LVY++ +NSF+AM KAGSKGNL KL QHSMCLGLQH+LA LSF +P
Sbjct: 728 AFRLVFRDIQSLVYRYASKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRMPH 787
Query: 2250 ELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSF 2071
+LSCA WN QK+ + E + YIP +V S+L+GLNP+ECFV S+T+RDSSF
Sbjct: 788 QLSCAGWNKQKA-------DDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSF 840
Query: 2070 GGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS--------- 1918
+AD+ GTL RR+MFFMRDL YDGTVR+ +GN +VQF+Y D+ +S
Sbjct: 841 SDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSSSVDEINKGD 900
Query: 1917 -MGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 1741
+ G PVG ALDQP+S+LE SPLL LK VL+CG+K+++ ++ SLFLS
Sbjct: 901 GIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLS 960
Query: 1740 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEV 1561
+L R +GFEY ALEV++HLE LLFSDIVS V+I F SPW CHFH+ KE+
Sbjct: 961 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEI 1020
Query: 1560 AKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALS 1381
K+R +K+ +IDAL KSK PK+ ITS+ C+ DT K+ CI+ +
Sbjct: 1021 VKKRSLKMHYIIDALDKQ-----CKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIV 1075
Query: 1380 ESLKG-FSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRV 1204
E+ K F +L+ ++D++ P LL+TVIKGF E +KVDILW +P PKS R GE FLRV
Sbjct: 1076 ETSKNEFIELETIQDLMIPFLLETVIKGFMEIRKVDILWNDKPKIPKSHNRLRGELFLRV 1135
Query: 1203 VTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 1024
S KT+ W+ LMD CL I +IIDW RSHPD+IH+C AYGID GW+ F+N+L SA+
Sbjct: 1136 HMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAM 1195
Query: 1023 SDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 844
SD GKT+LPEHL++ ANCLS TGEF+ LNAKGL QR+ A+V +PF QACFSNP DC ++
Sbjct: 1196 SDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIR 1255
Query: 843 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVART- 667
AAK G +D LQGS++AL+WG+ P++GTG FDIVY+GKG E +KP DVY LL + +
Sbjct: 1256 AAKAGVVDDLQGSIDALAWGKIPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMITPG 1314
Query: 666 -------------KPDDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQR 526
K D QF K K ++ + + + I+++S
Sbjct: 1315 QNTEFGVLDAQIYKSDKCGAQFLHKFGGCGRKGFKVKEGIPRSFLRRLLTYDDIQRMSYT 1374
Query: 525 LKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLV 349
++++LK+Y ++ +L+ DKS + L FHPR ++KIG G DIKV HP++ +T CF LV
Sbjct: 1375 VRKILKKYSVDQQLNERDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLV 1434
Query: 348 RTDGTEEDFSYNKCIHHALEIIAPEKASAY 259
RTDGT EDFSY KC+H+ALEIIAP++A Y
Sbjct: 1435 RTDGTIEDFSYRKCLHNALEIIAPQRAQRY 1464
>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica]
Length = 1488
Score = 1315 bits (3403), Expect = 0.0
Identities = 718/1470 (48%), Positives = 944/1470 (64%), Gaps = 55/1470 (3%)
Frame = -3
Query: 4503 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 4324
V SA + I +L++ D K+S I ++EV++ LGLP ++ +C TCG+++ K CE
Sbjct: 11 VPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSS-QCPTCGSRDLKSCE 69
Query: 4323 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNG 4144
GHFG+INFP+TI++PYF+SEV QILNKICPGCKSIR + + + Q K C+YC G
Sbjct: 70 GHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATELIT-KENPQRKGCKYCAG 128
Query: 4143 KSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDW---VLASDYWDIIPKDPSQAH 3973
S YP MKFKVSSK++F KTAIIAE+ E NK +LA+DYWDI PKD +
Sbjct: 129 NSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNKPQKGFKKILAADYWDIFPKDEQEEE 188
Query: 3972 EGLPA--NKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF---- 3811
E A N+RVLS +QV ++LKDV P ++ + + N+IFLN VTPNSHRV E
Sbjct: 189 EETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRVTEVTHAF 248
Query: 3810 --GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK-IYEKQXXX 3640
GQR+ D T+ Y+K+VDFRG N LS V+D K SK+ +K N+ + +
Sbjct: 249 SNGQRLIFDARTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSN 308
Query: 3639 XXXXXXSGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 3460
SGL+ IK+++LGKR DHSFRMV+VGDP ++++EIG+P IAE + +S+ L WN
Sbjct: 309 DYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQVSESLTAWN 368
Query: 3459 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 3280
W KL C E EKG+ V R G V + L+ GD I R L DGD VLINRPPSIH
Sbjct: 369 WEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLDDGDTVLINRPPSIH 428
Query: 3279 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 3100
QHSLIAL VK+LP+ SV +INPL C P R DFDGDCLHGYVPQSV++RVELTELVSLDKQ
Sbjct: 429 QHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQ 488
Query: 3099 LVNGQDGRNXXXXXXXXXXXXXXXLENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSS 2920
L N Q GRN LE+ V L+ E+QQLQMF P +LPA+ P++ +
Sbjct: 489 LTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANAL 548
Query: 2919 LWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDR 2740
+WTGKQL S+LLP F+ + S VCIR G+LVSS GS WL D N+FQ L++H +
Sbjct: 549 VWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSE-GSFWLWDTDGNLFQSLVKHCHGQ 607
Query: 2739 ALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXDTESRKNLLDEIHYGLEEAEKLSEVSLL 2560
LDFL A Q VLCEWLS RG D+ SRKN++DEI YGL++A+ + L
Sbjct: 608 VLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHL 667
Query: 2559 MVGGNEDLLVESSDE---NEDMEKFLK--------------ERILIDQQTKAEFFQASLS 2431
MV D L +++E N + +FL ER+ ++Q A Q+S+
Sbjct: 668 MVDSCRDFLTGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVD 727
Query: 2430 ASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPR 2251
A + V D+Q+LVY++ +NSF+AM KAGSKGNL KL QHSMCLGLQH+LA LSF +P
Sbjct: 728 AFRLVFRDIQSLVYRYASKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRMPH 787
Query: 2250 ELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSF 2071
+LSCA W+ QK+ + E + YIP +V S+L+GLNP+ECFV S+T+RDSSF
Sbjct: 788 QLSCAGWHKQKA-------DDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSF 840
Query: 2070 GGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS--------- 1918
+AD+ GTL RR+MFFMRDL YDGTVR+ +GN +VQF+Y D+ +S
Sbjct: 841 SDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSSSVDEINKGD 900
Query: 1917 -MGGHPVGXXXXXXXXXXXXXALDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 1741
+ G PVG ALDQP+S+LE SPLL LK VL+CG+K+++ ++ SLFLS
Sbjct: 901 GIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLS 960
Query: 1740 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXSPWACHFHINKEV 1561
+L R +GFEY ALEV++HLE LLFSDIVS V+I F SPW CHFH+ KE+
Sbjct: 961 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEI 1020
Query: 1560 AKRRRVKLRSVIDALYMNNKFTGVKSKVILPKLHITSKVCSEVDTRKKSDSVICISAALS 1381
K+R +K+ +IDAL KSK PK+ ITS+ C+ DT K+ CI+ +
Sbjct: 1021 VKKRSLKMHYIIDALDKQ-----CKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIV 1075
Query: 1380 ESLKG-FSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRHLGEPFLRV 1204
E+ K F +L+ ++D++ P LL+TVIKGF E +KVDILW +P PKS R GE FLRV
Sbjct: 1076 ETSKNEFIELETIQDLMIPFLLETVIKGFMEIRKVDILWNDKPKIPKSHNRLRGELFLRV 1135
Query: 1203 VTSEYCQKTKFWSILMDKCLRIRNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 1024
S KT+ W+ LMD CL I +IIDW RSHPD+IH+C AYGID GW+ F+N+L SA+
Sbjct: 1136 HMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAM 1195
Query: 1023 SDTGKTILPEHLIVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 844
SD GKT+LPEHL++ ANCLS TGEF+ LNAKGL QR+ A+V +PF QACFSNP DC ++
Sbjct: 1196 SDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIR 1255
Query: 843 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVART- 667
AAK G +D LQGS++AL+WG+ P++GTG FDIVY+GKG E +KP DVY LL + +
Sbjct: 1256 AAKAGVVDDLQGSIDALAWGKIPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMITPG 1314
Query: 666 -------------KPDDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQR 526
K D QF K K ++ + + + I+++S
Sbjct: 1315 QNTEFGVLDAQIYKSDKCGAQFLHKFGGCGRKGFKVKEGIPRSFLRRLLTYDDIQRMSYT 1374
Query: 525 LKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLV 349
++++LK+Y ++ +L+ DKS + L FHPR ++KIG G DIKV HP++ +T CF LV
Sbjct: 1375 VRKILKKYSVDQQLNERDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLV 1434
Query: 348 RTDGTEEDFSYNKCIHHALEIIAPEKASAY 259
RTDGT EDFSY KC+H+ALEIIAP++A Y
Sbjct: 1435 RTDGTIEDFSYRKCLHNALEIIAPQRAQRY 1464