BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00005043
         (3366 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   605   0.0  
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   593   0.0  
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   551   e-175
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   534   e-175
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   532   e-174
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo...   520   e-169
gb|KYP34165.1| Copia protein [Cajanus cajan]                          514   e-168
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   538   e-166
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]            516   e-165
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   524   e-164
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo...   506   e-164
gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposo...   504   e-164
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   530   e-163
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   502   e-163
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   523   e-162
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   524   e-161
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   520   e-161
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   518   e-159
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   518   e-159
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   507   e-158

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  605 bits (1561), Expect = 0.0
 Identities = 296/538 (55%), Positives = 393/538 (73%), Gaps = 3/538 (0%)
 Frame = +3

Query: 210  HPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITN 389
            H M+TRSK GIFKP VY   ++ + EPN  QEA+   +WKEAM +E+ AL KNKTW++ +
Sbjct: 722  HHMVTRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVS 780

Query: 390  LPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLI 569
            LP  R  +GCRWVFK+KRN DGSVSRYKARLVAKGY+Q+ G DF + FSPVVKPTT R++
Sbjct: 781  LPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVV 840

Query: 570  LTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQ--VCKLHKALYGL 743
            L IA+S+ W +RQ+DV+NAFL+G L +  E+YM+QPPGF+   N+ Q  VCKLHKALYGL
Sbjct: 841  LAIAVSQSWCIRQLDVNNAFLNGELQE--EVYMDQPPGFDGKTNQEQKLVCKLHKALYGL 898

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AWF++L+  L   GF ++K+D SLF+R +  S             TG+S  ++  
Sbjct: 899  KQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHE 958

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGML-LSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            LI  L   F +KDLG+L YFLG+E+  T DG L LSQK+Y QDLL+K +M G++      
Sbjct: 959  LISRLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPM 1018

Query: 1101 XXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMK 1280
                      G+P  +   YR VVG+LQY+TITRPEI F+VNK+ QFMQ PLD HWKA+K
Sbjct: 1019 LSGLKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVK 1078

Query: 1281 RLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKK 1460
            R+LRY++GT DLG+ L  S  +++ GF D+DW SD DDR+STSG+C+F+GK+L+SWSSKK
Sbjct: 1079 RILRYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKK 1138

Query: 1461 QHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQ 1640
            QHT SRSS+EAEYRSL    SE+LWLQ+LL+EL  +    PVIW DN+STV +SANP++ 
Sbjct: 1139 QHTTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLH 1198

Query: 1641 ARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 1814
            +RTKH+E+DL+F+REKV  + ++V+H+P  DQ+AD  TKPL  +FF ++R +L V++L
Sbjct: 1199 SRTKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVASL 1256



 Score = 96.3 bits (238), Expect = 2e-16
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 26/135 (19%)
 Frame = +1

Query: 3025 GNRIHCQICGYSNHTADKCYNRFNPDF---------TPNTNSQSQRSFTEG--------- 3150
            G +  CQ+C    HT  +C+ R++P+F         TP       R+   G         
Sbjct: 178  GIKPQCQLCNKFGHTVHRCFYRYDPNFHGNMPANGPTPGVLGSGARNGASGSISSAGNVN 237

Query: 3151 --------NKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQ 3306
                    N+++++  AM+AT +      W+PDSGAT+H+T+D  NLN  A+YNG+ K+ 
Sbjct: 238  LTEYDAQENQDYSEMEAMVATPEDLQNCCWFPDSGATNHVTHDLGNLNSGAEYNGNSKIH 297

Query: 3307 IGNGAGLDISHVGSS 3351
            +GNG GL ISH+G S
Sbjct: 298  MGNGTGLKISHIGLS 312


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  593 bits (1528), Expect = 0.0
 Identities = 288/546 (52%), Positives = 388/546 (71%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            +THPMITR+K+GI KPK+   F+ A  EP++V  AL  + WK+AM  EY+ALQ+N TW++
Sbjct: 912  NTHPMITRAKSGIVKPKI---FIAAIREPSSVSAALQQDEWKKAMVAEYDALQRNNTWSL 968

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
              LP GR  IGC+WV+K K N DG+V +YKARLVAKG+ Q AG DFT+ FSPVVKP+T R
Sbjct: 969  VPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVR 1028

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
            ++ TIALS+ W ++Q+DV+NAFL+G  D   E++M+QP GF   +N   VC+LHKALYGL
Sbjct: 1029 VVFTIALSRNWAIKQLDVNNAFLNG--DLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGL 1086

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AWFE+L   L S GF ++K+D SLF+R +PN               G+    +TS
Sbjct: 1087 KQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITS 1146

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXX 1103
            LI  LN  F +KDLG++HYFLG+++ +T +G+ LSQ +Y +DLL+K +M   +       
Sbjct: 1147 LIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLP 1206

Query: 1104 XXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKR 1283
                     G+P  D   YR  VG+LQY+TITRPE++F+VNK+ QFMQNP + HWK +KR
Sbjct: 1207 TGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKR 1266

Query: 1284 LLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQ 1463
            +LRY+ GTL  GL L KS +L + GF D+DWASD DDR+STSG+C+F+G NLISW SKKQ
Sbjct: 1267 ILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQ 1326

Query: 1464 HTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQA 1643
            H VSRSS E EYRSL   ++E+ WL++LL+EL L   +PP++W DNLSTV +SANP++ A
Sbjct: 1327 HIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHA 1386

Query: 1644 RTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSL 1823
            RTKH+E+DL+F+REKV  K + V H+P++DQ+AD LTK +    F   R++L +  LS+L
Sbjct: 1387 RTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIENLSTL 1446

Query: 1824 ELTGDV 1841
             L GDV
Sbjct: 1447 SLRGDV 1452



 Score =  112 bits (281), Expect = 2e-21
 Identities = 68/212 (32%), Positives = 119/212 (56%)
 Frame = +1

Query: 2284 HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQW 2463
            HS++VKL ++NFLIWKQ I + ++GYGL+           K + +++E     +P     
Sbjct: 29   HSLSVKLDNKNFLIWKQQIVSAIRGYGLQ-----------KFVFSDDEVQFNFSPE---- 73

Query: 2464 QRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKK 2643
            + +D                   +G S  F     LE  F+S + A+  Q+K QLQ+ KK
Sbjct: 74   KMRDLEKQLRNSSSGNNRINYCSLGFSHLFLSQYFLEQYFASQTRAKAKQFKTQLQHTKK 133

Query: 2644 NSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLR 2823
               ++ EYL+KIK   D+LA+VG  ++ +D V  +L GL ++Y++ V S+I + ++ ++ 
Sbjct: 134  GGSTIDEYLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYESFVTSVILRNDDFSVE 193

Query: 2824 DVTSLLLSYESRLEAAALINTDGSLPTAHLAT 2919
            ++ +LL+++ESR+E     N+  S P+AH+A+
Sbjct: 194  EIEALLMAHESRVEKNN--NSLDSSPSAHVAS 223



 Score = 87.0 bits (214), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +1

Query: 3040 CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFA-QSSAMIATTDQGSEVNW 3216
            CQ+CG   H   +CY RF+  F    N  S+ S      +F+ Q + +I T++  S+ NW
Sbjct: 310  CQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAYYSFSPQVNGVIPTSEVFSDDNW 369

Query: 3217 YPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 3351
            YPDSGA++H+T +  NL  +A++ G  ++ +GNG GL I H+G S
Sbjct: 370  YPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQS 414


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  551 bits (1420), Expect = e-175
 Identities = 270/552 (48%), Positives = 381/552 (69%), Gaps = 6/552 (1%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFV-----DADVEPNNVQEALCDNRWKEAMAKEYEALQKN 368
            + H M TRSKAGIFKPK Y A +     D  +EPN V+EAL    W +AM  EY+AL  N
Sbjct: 456  NAHLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWLKAMKDEYQALVSN 515

Query: 369  KTWTITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVK 548
            +TW++ +LP G   IGC+W+FK K N DGS  R+KARLVAKGY Q  G+DF++ FSPVVK
Sbjct: 516  QTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKPGLDFSETFSPVVK 575

Query: 549  PTTARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHK 728
            PTT R++L++A++  W + Q+D++N FLHG L + V  YM QPPGF   +++ +VCKL+K
Sbjct: 576  PTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESV--YMSQPPGFN-TQHKDKVCKLNK 632

Query: 729  ALYGLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSD 908
            A+YGLKQA ++W+ +L N L  +GF ++K+D SLF+R S  +             TGNS 
Sbjct: 633  AIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKTTTLMLLIYVDDIIITGNSK 692

Query: 909  LQVTSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRG 1085
             ++ S+I  L+  F +KDLG LHYFLGVE+  TK+G +LL+Q +Y +++L K  M+ S  
Sbjct: 693  EEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQTKYLREILHKASMSDSTP 752

Query: 1086 XXXXXXXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLH 1265
                        + +     D   YR +VG+LQYLTITRP+++FAVNK+ Q+M  P + H
Sbjct: 753  QPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVSFAVNKVCQYMHCPQEHH 812

Query: 1266 WKAMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLIS 1445
            WKA+KR+LRY+ GT+  GL + K+  L++ GF DSDW +D DDRKSTSGYC+++G NLIS
Sbjct: 813  WKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDDRKSTSGYCVYLGSNLIS 872

Query: 1446 WSSKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSA 1625
            WSS+KQ +VSRS++EAEYRS+    ++++W+Q+LL+EL +  + P  I+ DNLS V ++A
Sbjct: 873  WSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVPKSLPR-IYCDNLSAVLITA 931

Query: 1626 NPIIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            NP++ ++TKH E+DLHF+R+KV+   + V H+PA  Q+AD LTKPL  Q F   RN+L V
Sbjct: 932  NPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLTKPLAKQHFHHFRNKLMV 991

Query: 1806 SALSSLELTGDV 1841
            + L ++ L GDV
Sbjct: 992  TTLDTMSLRGDV 1003


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  534 bits (1375), Expect = e-175
 Identities = 283/538 (52%), Positives = 366/538 (68%), Gaps = 5/538 (0%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLP 395
            M TRSK+GI KPK Y + + A  EP NV++AL D +W EAM +EY AL KN TWT+  LP
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 396  PGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILT 575
            P RN IGC+WVF+IK N+DGSV+RYKARLVAKG+ Q  G DF + FSP++KP T RLILT
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 576  IALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQAS 755
            +A+S  W + Q+DV+NAFL+G L++ V  YM+QPPGFE+  +   VCKL+KALYGLKQA 
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETV--YMQQPPGFEVPDSTL-VCKLNKALYGLKQAP 176

Query: 756  KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLIDA 935
            + WFERLQ  L   GF+ASK D SLF     ++             TGNS      LID 
Sbjct: 177  RQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQ 236

Query: 936  LNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXX 1112
            LN  F +K LGKL YFLG+E+ + ++G +LL+Q +Y +DLL++  M  +           
Sbjct: 237  LNSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSC 296

Query: 1113 XXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLR 1292
               K   +   D   YR VVG+LQY TITRPE++FAVNK+ QFM +PL+ HW A+KR+LR
Sbjct: 297  KLSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILR 356

Query: 1293 YISGTLDLGLQLFKSPHLH----VTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKK 1460
            Y+ GT+  GL L +   +H    +  + D+DWA+DPDDR+STSG  IF+G NLISW S+K
Sbjct: 357  YLKGTMFYGLHL-QPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRK 415

Query: 1461 QHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQ 1640
            Q  V+RSS+EAEYRSL  A SEVLW+QTLL EL +  +  P I+ DN STV ++ NP++ 
Sbjct: 416  QPVVARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFS-TPTIYCDNQSTVSLAHNPVLH 474

Query: 1641 ARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 1814
            +RTKH+EI+L F+REKV    + V HIPASDQ ADALTKPL    F  +R++L V  L
Sbjct: 475  SRTKHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKVVEL 532


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  532 bits (1370), Expect = e-174
 Identities = 271/534 (50%), Positives = 364/534 (68%), Gaps = 4/534 (0%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLP 395
            M TR+KAGI KP++    +   +EP N ++AL  + W  AM +EY AL  N TWT+ +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 396  PGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILT 575
            P +  IGC+WVF+IK N+DG+V++YKARLVAKG+ Q  G D+ + FSPVVKP T RLILT
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 576  IALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQAS 755
            +AL+  W ++Q+DV+NAFL+G L +  E+YM QPPGFE + ++  VCKLHKA+YGLKQA 
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQE--EVYMSQPPGFE-SSDKTLVCKLHKAIYGLKQAP 177

Query: 756  KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLIDA 935
            +AWF++L+  L  L F+ SK D SLF+    N+             TGN+   + ++I  
Sbjct: 178  RAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQ 237

Query: 936  LNHFFPIKDLGKLHYFLGVEIHYTKDGML-LSQKRYAQDLLRKVQMTGSRGXXXXXXXXX 1112
            LN  F +KDLG+L +FLG+E+    DG L L+Q +Y +DLL +  M  S           
Sbjct: 238  LNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297

Query: 1113 XXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLR 1292
               +      +D  LYR VVG+LQY TITRPEI+F+VNK+ QFM NPL+ HW A+KR+LR
Sbjct: 298  KLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILR 357

Query: 1293 YISGTLDLGLQLFKSPH---LHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQ 1463
            Y+ GT+ LGL L  +P    L +  + D+DWASDPDDR+STSG  IFVG NLISW SKKQ
Sbjct: 358  YLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQ 417

Query: 1464 HTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQA 1643
              V+RSS+EAEYRSL  A +EVLW+QTLL+ELH+ S+  PV++ DN+STV ++ NP++ A
Sbjct: 418  TVVARSSAEAEYRSLALATAEVLWIQTLLSELHV-SHHTPVVYCDNMSTVALAHNPVLHA 476

Query: 1644 RTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            RTKH+E+DL F+REKV   ++ V H+PA DQ AD LTK L    F  +R +L +
Sbjct: 477  RTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKL 530


>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 552

 Score =  520 bits (1338), Expect = e-169
 Identities = 263/546 (48%), Positives = 360/546 (65%), Gaps = 8/546 (1%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADV-------EPNNVQEALCDNRWKEAMAKEYEALQKNKT 374
            MITR+KAGI KPK Y               EP +++EA+    WK+ M +EY+AL KN T
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 375  WTITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPT 554
            W +T LP GRN+IGCRWVFK+K N+DGS++R+KARLVAKG+ Q  G DF++ FSPVVKP 
Sbjct: 61   WILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVVKPA 120

Query: 555  TARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKAL 734
            T R+IL+I +S+ W +RQ+D+ NAFL+G L +D  IYM QPPGF I  ++  VCKL K+L
Sbjct: 121  TIRIILSIVVSRSWDMRQIDIANAFLNGDLQED--IYMAQPPGF-IQTDKSLVCKLQKSL 177

Query: 735  YGLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQ 914
            YGLKQA +AWFERL   LS +GF  +K D+SLFIR   +               G+S   
Sbjct: 178  YGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSSTSA 237

Query: 915  VTSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXX 1091
            ++S+++ L   FP++DLG  +YFLG+++    +  ++L+Q +Y  DLL +  M  ++   
Sbjct: 238  ISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAKPIK 297

Query: 1092 XXXXXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 1271
                        +G    +   YR +VGSLQY+TITRPEI F+VNK+ Q+MQ P + HW 
Sbjct: 298  TPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNPHWM 357

Query: 1272 AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            A+KR+LRY+ GTL+  L L KSP   + GF D+DW S+ +DRKST+GY I++G N ISWS
Sbjct: 358  AVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPISWS 417

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  VSRS++EAEYRS+    +E+ WL+ LL ELH+ +   P+I+ DNLS V +S NP
Sbjct: 418  SKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIPTTSKPIIYCDNLSAVLLSTNP 477

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSA 1811
            I+  +TKH EIDL+F+R++VQ K + V HIP+S+Q  D LTK L    F   +N+L V  
Sbjct: 478  ILHTKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQTTDILTKALSFPAFNHCKNKLRVRL 537

Query: 1812 LSSLEL 1829
              +L L
Sbjct: 538  HPTLSL 543


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  514 bits (1325), Expect = e-168
 Identities = 269/542 (49%), Positives = 353/542 (65%), Gaps = 2/542 (0%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLP 395
            M+TR+KAGIFKPKVY A      EP NV +AL   +WK+AM  EY+AL KN TW + +LP
Sbjct: 1    MVTRAKAGIFKPKVYLA----TTEPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLP 56

Query: 396  PGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILT 575
            P R  I C+W+FK K + DGS+ R+KARLVA+G+ Q  G+D+TD FSPVV+P + R++L 
Sbjct: 57   PDRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLA 116

Query: 576  IALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQAS 755
            IA+SKGW + Q+DVDNAFL+G  D   EIYM QP GF        VCKL KA+YGLKQA 
Sbjct: 117  IAVSKGWPIHQIDVDNAFLNG--DLKEEIYMLQPQGFHQGSPN-TVCKLRKAIYGLKQAP 173

Query: 756  KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLIDA 935
            +AWF++L   L  LGF  +K+D SLFI  S  +             T NS   +  LI A
Sbjct: 174  RAWFQKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQA 233

Query: 936  LNHFFPIKDLGKLHYFLGVEIHYTK-DGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXX 1112
            L+ +FP+KDLG+LH+FLG+E+H     G+ LSQ RY  D+L ++ M+ +R          
Sbjct: 234  LHQYFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPAS 293

Query: 1113 XXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLR 1292
                       D   YR +VG+LQYLTITRP+I + VNKL QFM NPLD+HWKA KRLLR
Sbjct: 294  KLTNDGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLLR 353

Query: 1293 YISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTV 1472
            Y+ GTL  GL   K     +  + DSDWASD +D +STSG C+++G N++SW +KKQ  V
Sbjct: 354  YLKGTLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKVV 413

Query: 1473 SRSSSEAEYRSLGHAMSEVLWLQTLLAEL-HLRSNQPPVIWVDNLSTVFMSANPIIQART 1649
            SRSS+EAE+RS+   ++E+ ++Q LL+EL H+  NQ P+IW DN   V +S NP++  RT
Sbjct: 414  SRSSTEAEFRSMASLVAEIQYVQNLLSELGHINKNQ-PLIWCDNQGAVLLSLNPVLHTRT 472

Query: 1650 KHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSLEL 1829
            KH E+DL FIRE+V    I+V HIPA  Q+AD LTK      F  +R++L V   S+L L
Sbjct: 473  KHFELDLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLSL 532

Query: 1830 TG 1835
             G
Sbjct: 533  RG 534


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  538 bits (1387), Expect = e-166
 Identities = 277/542 (51%), Positives = 376/542 (69%), Gaps = 4/542 (0%)
 Frame = +3

Query: 210  HPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITN 389
            HPMITRSK GI +P++    + ++VEP  V+ AL D  W  AM  E  AL  N TWT+ +
Sbjct: 867  HPMITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLVD 926

Query: 390  LPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLI 569
            LPPGR  IGC+WVF++K N DGS+++YKARLVAKG+ Q  GVDF++ FSPVVKP T R++
Sbjct: 927  LPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRIV 986

Query: 570  LTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQ 749
            L++A++  W LRQ+D++NAFL+G+L++D  IYM QPPGF    +++ VCKLHK+LYGLKQ
Sbjct: 987  LSLAVTFQWPLRQLDINNAFLNGMLEED--IYMSQPPGFIEPNSKHLVCKLHKSLYGLKQ 1044

Query: 750  ASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLI 929
            A +AWF+RL +VL  LGF  SK D SLFI  +P++             TGNS   +   I
Sbjct: 1045 APRAWFDRLTSVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQQFI 1104

Query: 930  DALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXXXX 1106
            + L+  F +KDLG L YFLG+E+    +G +LLSQ +Y  DLL KV+M  S+G       
Sbjct: 1105 NHLHATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTPMIG 1164

Query: 1107 XXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRL 1286
                 K  G    D  LYR VVG+LQY TITRPEI F+VNK+SQFM +P++ HWK +KR+
Sbjct: 1165 GQQLAK-TGTLFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVVKRI 1223

Query: 1287 LRYISGTLDLGLQLF---KSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSK 1457
            LRY+ GTL  GL       S   ++T F+D+DWA+DP+DR+STS  CI++G NL+SW SK
Sbjct: 1224 LRYLKGTLKHGLVFTPARSSSSFNLTAFTDADWAADPNDRRSTSAACIYLGPNLVSWWSK 1283

Query: 1458 KQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPII 1637
            KQ  V+RSS+EAEYR+L  A++EVLW+Q+LL EL +R N P V+  DN STV +S NP++
Sbjct: 1284 KQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRFNTPMVL-CDNQSTVALSHNPVL 1342

Query: 1638 QARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALS 1817
             +R+KH+E+D+ F+REKV +K ++V HIP+  Q AD LTK L  + F  +R++LNV+  S
Sbjct: 1343 HSRSKHMELDIFFVREKVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNVADPS 1402

Query: 1818 SL 1823
             +
Sbjct: 1403 DM 1404



 Score =  116 bits (291), Expect = 1e-22
 Identities = 91/390 (23%), Positives = 158/390 (40%), Gaps = 46/390 (11%)
 Frame = +1

Query: 2320 LIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQRQDQXXXXXXX 2499
            + W+Q +T  ++ + LE ++      P K +  E+     VNP Y  W R+D        
Sbjct: 1    MTWQQQVTAVIRAHDLERFVVNP-KIPLKFLTPEDRDANLVNPEYTAWDRKDSLLVSWLL 59

Query: 2500 XXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNSLSVREYLSKI 2679
                      VV    S++IW  +  +F S +  +  Q +++L+ +KK + S  +YL +I
Sbjct: 60   ATLSESIQARVVSCRHSYQIWDLVFQHFQSLTKIKATQLRLELRTIKKGTRSCSDYLLRI 119

Query: 2680 KGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAV---VVSIISKTENCNLRDVTSLLLSY 2850
                + LA++G  ++ R+    +L GL  EYD++   V + +S+ ++ +  ++ +++L+ 
Sbjct: 120  STIVETLASIGSPISPREHAECILGGLPPEYDSLISTVTAFVSRDDHFSPAELETMILAQ 179

Query: 2851 ESRLEAAALI--------------NTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXX 2988
            E+RL+ A                 +   ++P  +LA Q        P   +         
Sbjct: 180  EARLDQAKTAAIQEPLSINLAQASSVPTNVPNVNLAFQPPLMTNSQPNPVQNFSPQPQAG 239

Query: 2989 XXXXXXXXXXSFGNR-----IHCQICGYSNHTADKCYNRFN------------------- 3096
                      S G R     + CQIC    H A  CY   N                   
Sbjct: 240  FNNHGGRGRGSRGGRNRGSQVQCQICHKRGHEASTCYQLSNSLALGASWSPYSLGGSLPG 299

Query: 3097 -----PDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFS 3261
                 P FT  T   +  +     +  + S+A  A     +   W PDSGA+HH T D  
Sbjct: 300  SVFHPPGFTYPT---APANPPPRPRTASASAAPPAAPTLNTATAWIPDSGASHHATPDPQ 356

Query: 3262 NLNFAADYNGHGKLQIGNGAGLDISHVGSS 3351
             L  +A + G   + + NG G  I+ VGS+
Sbjct: 357  YLLQSAQFTGAEHIAMANGQGTSITSVGSN 386


>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
          Length = 821

 Score =  516 bits (1330), Expect = e-165
 Identities = 261/539 (48%), Positives = 355/539 (65%), Gaps = 11/539 (2%)
 Frame = +3

Query: 222  TRSKAGIFKPKVYGAFVDADV---------EPNNVQEALCDNRWKEAMAKEYEALQKNKT 374
            TR ++GI K KVY    D  V         EP +++EA+ +  WKEAM  EY AL +NKT
Sbjct: 279  TRLQSGIRKEKVY---TDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKT 335

Query: 375  WTITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPT 554
            W +     GRNVI C+WV+K+KR ADGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  
Sbjct: 336  WHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAA 395

Query: 555  TARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKAL 734
            T R++L++A+S+GW LRQ+DV NAFLHG+L++  E+YMEQPPG+E       VCKL KAL
Sbjct: 396  TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEE--EVYMEQPPGYEKKSMPNYVCKLDKAL 453

Query: 735  YGLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQ 914
            YGLKQA +AW+ RL   LS LGF  SKAD SLF                      +    
Sbjct: 454  YGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDA 513

Query: 915  VTSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXX 1094
             ++L+  L+  F +KDLG LHYFLG+E+H  KDG++LSQ++YA DLLR+V M   +    
Sbjct: 514  TSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVST 573

Query: 1095 XXXXXXXXXKFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHW 1268
                       +G      D   YR VVG+LQYLT+TRP+I+F++NK+ QF+  P   HW
Sbjct: 574  PLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHW 633

Query: 1269 KAMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISW 1448
             A+KR+LRY+  T+D GL+  ++P L V+GFSD+DWA  PDDR+ST G+ +F+G NL+SW
Sbjct: 634  AAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSW 693

Query: 1449 SSKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSAN 1628
            S++KQ TVSRSS+EAEY++L +A +E++W+QTLL EL + S +   +W DNL   ++SAN
Sbjct: 694  SARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSAN 753

Query: 1629 PIIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            PI  ARTKH+E+D HF+RE+V  K + + +I   DQ+AD  TK +  +     +N LN+
Sbjct: 754  PIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  524 bits (1350), Expect = e-164
 Identities = 268/538 (49%), Positives = 362/538 (67%), Gaps = 4/538 (0%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            + HPM TR+K GI KP++    +   VEP   ++AL +  W  AM  EY AL  N TW++
Sbjct: 533  NVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSL 592

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
              LPP R  IGC+WVF++K N +GSV +YKARLVAKG+ Q  G D+ + FSPV+KP T R
Sbjct: 593  VPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 652

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
            LILT+AL+  W ++Q+DV+NAFL+G L++  E+YM+QPPGFE + ++  VCKLHKA+YGL
Sbjct: 653  LILTLALTHRWPIQQLDVNNAFLNGTLEE--EVYMQQPPGFEAS-DKNLVCKLHKAIYGL 709

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AWF++L++ L  L F ASK D SLFI    N+             TGN+   + +
Sbjct: 710  KQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHT 769

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            L+  L+  F +KDLG L +FLG+E+    DG ++L+Q +Y +DLL +  M GS+      
Sbjct: 770  LVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPM 829

Query: 1101 XXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMK 1280
                   K      +D  LYR VVG+LQY TITRPEI+F+VNK+ QFM +PL  HW A+K
Sbjct: 830  ISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVK 889

Query: 1281 RLLRYISGTLDLGLQL---FKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            R+LRY+ GT   GL+L     S  L +  + D+DWASDPDDR+STSG  IF+G NL+SW 
Sbjct: 890  RILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWW 949

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  V+RSS+EAEYRSL  A +EV W+QTLL+EL + ++  P+I+ DNLSTV ++ NP
Sbjct: 950  SKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV-THSTPIIFCDNLSTVALAHNP 1008

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            ++ ARTKH+E+DL F+REKV  K + V H+PA DQ AD LTK L    F  +R++L V
Sbjct: 1009 VLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQV 1066


>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 553

 Score =  506 bits (1303), Expect = e-164
 Identities = 262/553 (47%), Positives = 359/553 (64%), Gaps = 11/553 (1%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFV------DADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTW 377
            MITRSK GIFKPK Y          D   EP  ++EAL    WK+AM +EY AL  NKTW
Sbjct: 1    MITRSKHGIFKPKTYEVTTPTQKLHDPFKEPKTIKEALAIPNWKQAMDQEYNALIHNKTW 60

Query: 378  TITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTT 557
             +T+LP G N++GC+W+FK+K NADG+++R+KARL+AKG+ Q +G+DFT+ F PVVKP T
Sbjct: 61   VLTHLPVGANLVGCKWIFKVKTNADGTINRHKARLMAKGFNQQSGLDFTETFIPVVKPIT 120

Query: 558  ARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALY 737
             R +LTIALS  W LRQ+D+ NAFL+G  D    IYM QPPGF  N ++  VCKL K LY
Sbjct: 121  IRTVLTIALSLNWSLRQLDIANAFLNG--DLQETIYMAQPPGFT-NGDKNMVCKLQKFLY 177

Query: 738  GLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQV 917
            GLKQA +AWF++L + LS LGF  +K+D SLF R++ ++             +G+S  ++
Sbjct: 178  GLKQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFRITTSNIILILVYVDDLIISGSSQTEI 237

Query: 918  TSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGML-LSQKRYAQDLLRKVQMTGSRGXXX 1094
             S++  L   FP +DLG  +YF G+++    +  L L+Q +Y  DLL++  M  ++    
Sbjct: 238  DSVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLTQTKYINDLLKRANMVTAKPVTT 297

Query: 1095 XXXXXXXXXKFQGN----PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDL 1262
                         N    P  +  LYR +VGSLQYL ITRPEI+F+VNK+ QFMQ P   
Sbjct: 298  RMFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLIITRPEISFSVNKVCQFMQEPKAT 357

Query: 1263 HWKAMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLI 1442
            HW+A+KR+LRY+ GT   G+ L KS +LH+  F D+DW  D DDRKST+G+C+F+G N I
Sbjct: 358  HWQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADWGVDVDDRKSTTGFCVFLGCNPI 417

Query: 1443 SWSSKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMS 1622
            SWSS+KQ  VSRS+ EAEYRSL    +E+ W++ LL EL + + + P I+ DNLS V ++
Sbjct: 418  SWSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHELQVPNIRTPKIYCDNLSAVLLA 477

Query: 1623 ANPIIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLN 1802
            ANPI+ ++TKH E+DL+F+R+KVQ + I V HIP+ +Q AD  TKPL    F+    +L 
Sbjct: 478  ANPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQTADIFTKPLTYPSFSSCMYKLR 537

Query: 1803 VSALSSLELTGDV 1841
            +   S + L   V
Sbjct: 538  LHFCSPISLRESV 550


>gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 513

 Score =  504 bits (1298), Expect = e-164
 Identities = 252/515 (48%), Positives = 347/515 (67%), Gaps = 8/515 (1%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADV-------EPNNVQEALCDNRWKEAMAKEYEALQKNKT 374
            MITR+KAGI KPK Y               EP +++EA+    WK+ M +EY+AL KN T
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 375  WTITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPT 554
            W +T LP GRN+IGCRWVFK+K N+DGS++R+KARLVAKG+ Q  G DF++ FSPVVKP 
Sbjct: 61   WILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVVKPA 120

Query: 555  TARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKAL 734
            T R+IL+I +S+ W +RQ+D+ NAFL+G L +D  IYM QPPGF I  ++  VCKL K+L
Sbjct: 121  TIRIILSIVVSRSWDMRQIDIANAFLNGDLQED--IYMAQPPGF-IQTDKSLVCKLQKSL 177

Query: 735  YGLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQ 914
            YGLKQA +AWFERL   LS +GF  +K D+SLFIR   +               G+S   
Sbjct: 178  YGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSSTSA 237

Query: 915  VTSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXX 1091
            ++S+++ L   FP++DLG  +YFLG+++    +  ++L+Q +Y  DLL +  M  ++   
Sbjct: 238  ISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAKPIK 297

Query: 1092 XXXXXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 1271
                        +G    +   YR +VGSLQY+TITRPEI F+VNK+ Q+MQ P + HW 
Sbjct: 298  TPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNPHWM 357

Query: 1272 AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            A+KR+LRY+ GTL+  L L KSP   + GF D+DW S+ +DRKST+GY I++G N ISWS
Sbjct: 358  AVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPISWS 417

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  VSRS++EAEYRS+    +E+ WL+ LL ELH+ +   P+I+ DNLS V +S NP
Sbjct: 418  SKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIPTTSKPIIYCDNLSAVLLSTNP 477

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQ 1736
            I+ ++TKH EIDL+F+R++VQ K + V HIP+S+Q
Sbjct: 478  ILHSKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQ 512


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  530 bits (1365), Expect = e-163
 Identities = 272/544 (50%), Positives = 362/544 (66%), Gaps = 1/544 (0%)
 Frame = +3

Query: 210  HPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITN 389
            HPMITR+K G+FKPK   AF+ A  EP +V +AL +  WK+AM  EY AL KN TW + +
Sbjct: 862  HPMITRAKIGVFKPK---AFL-ATSEPISVAQALDNKHWKQAMQDEYNALLKNHTWDLVS 917

Query: 390  LPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLI 569
            LPPGR  I C+W+FK K   DGS+ R+KARLVA+G++Q  G+D+TD FSPVVKP + R++
Sbjct: 918  LPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSIRIV 977

Query: 570  LTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQ 749
            L +A+SKGW + Q+DVDNAFL+G L +D  IYM QP GF  N     VCKL KALYGLKQ
Sbjct: 978  LALAVSKGWPIHQIDVDNAFLNGDLKED--IYMLQPQGFH-NGAPNTVCKLRKALYGLKQ 1034

Query: 750  ASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLI 929
            A +AWF++L  +L  LGF+ +++D+SLF   S  +             T NS   + +LI
Sbjct: 1035 APRAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVDDIIITSNSPAAIQTLI 1094

Query: 930  DALNHFFPIKDLGKLHYFLGVEIHYT-KDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXX 1106
              L+ FFP+KDLG LHYFLG+E++     G+ LSQ +Y +D+L K+ M+ ++        
Sbjct: 1095 STLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLSQTKYLKDILDKLNMSNAKPVKTPMAP 1154

Query: 1107 XXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRL 1286
                         D  LYR V+G+LQYLTITRP+I + VNKL QFM +PL+ HWKA+KRL
Sbjct: 1155 SLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPDIAYTVNKLCQFMHHPLESHWKAVKRL 1214

Query: 1287 LRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQH 1466
            LRY+ GTL  GL   KS    +  + DSDWASD +D +STSG C+++G N++SW +KKQ 
Sbjct: 1215 LRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDHEDMRSTSGNCVYLGPNIVSWMAKKQR 1274

Query: 1467 TVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQAR 1646
             VSRSS+EAE+RSL   ++EV ++Q LL+ELH  S QPP+IW DN   V +SANP++  +
Sbjct: 1275 VVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNSSTQPPLIWCDNQGAVLLSANPVLHTK 1334

Query: 1647 TKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSLE 1826
            TKH E+DL F+RE+V    I V HIPA  Q+AD LTK      F  +R++L V   S+L 
Sbjct: 1335 TKHFELDLWFVRERVARGQIQVKHIPARFQVADLLTKAPSSSIFLALRHKLTVDKQSTLS 1394

Query: 1827 LTGD 1838
            L GD
Sbjct: 1395 LKGD 1398



 Score =  186 bits (473), Expect = 2e-44
 Identities = 106/359 (29%), Positives = 184/359 (51%), Gaps = 5/359 (1%)
 Frame = +1

Query: 2290 VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 2469
            ++ KL+++NFL W+Q   +T++GY L+ ++ G++  P +    E++    ++P Y  + +
Sbjct: 20   ISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQHKTDEDKAKGVLSPEYEDYDQ 79

Query: 2470 QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 2649
            QD                  +VG     +IW  LE  F+S + AR+ Q KIQL+ +KK +
Sbjct: 80   QDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQLRGIKKTT 139

Query: 2650 LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 2829
             ++ +YL +IK   + LAA+G  +N  + +  +  GL  EYD  + S++++TE  ++  +
Sbjct: 140  -AINQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSVEQI 198

Query: 2830 TSLLLSYESRLE---AAALINTDGSLPTAHLATQTQGRN-AQTPQYNKXXXXXXXXXXXX 2997
             SLL++ E RLE   A+  +    +L      ++ Q  N  +    N             
Sbjct: 199  ESLLMAQEERLEKHKASESVPLQANLAQGSFNSRKQFTNQGRGSNNNGTHGRGPHRGRGR 258

Query: 2998 XXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSA 3177
                     GN+  CQ+CG   H A  C++R++  +T    + +   +  GN+   Q  A
Sbjct: 259  GRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQ--QMQA 316

Query: 3178 MIA-TTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 3351
            MIA + +   +  WYPDSGAT+H+T+D +NL    DY G  K+ +GNG  + I+H G+S
Sbjct: 317  MIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTS 375


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  502 bits (1293), Expect = e-163
 Identities = 261/534 (48%), Positives = 354/534 (66%), Gaps = 4/534 (0%)
 Frame = +3

Query: 216  MITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLP 395
            M TR+KAGI KP++    +    EP + ++AL ++ W  AM +EY AL  N TWT+ +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 396  PGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILT 575
            P +  IGC+WVF+IK N DG+V++YKARLVAKG+ Q  G D+ + FSPVVKP T RLILT
Sbjct: 61   PNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 576  IALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQAS 755
            +AL+  W ++Q+DV+N FL+G L++  E+YM QPPGFE + ++  V K+HK +YGLKQA 
Sbjct: 121  LALTHHWSIQQLDVNNTFLNGNLEE--EVYMSQPPGFE-SSDKALVYKIHKEIYGLKQAP 177

Query: 756  KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLIDA 935
            +AWF++L+  L  L F+ SK + SLF+    N              TGN+   + S+I  
Sbjct: 178  RAWFDKLKATLFQLNFQISKCNPSLFVYSHGNHVIYILVYVDDIIITGNNSSILRSIIAQ 237

Query: 936  LNHFFPIKDLGKLHYFLGVEIHYTKDGM-LLSQKRYAQDLLRKVQMTGSRGXXXXXXXXX 1112
            LN  F +KDLG+L +FLG+E     DG   L+Q +Y +DLL +  M  S           
Sbjct: 238  LNSAFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297

Query: 1113 XXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLR 1292
               K      +D  LYR VVG+LQY TITRP+I+F+VNK+ QFM NPL+ HW A+KR+LR
Sbjct: 298  KLSKTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAIKRILR 357

Query: 1293 YISGTLDLGLQLFKSPH---LHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQ 1463
            Y+ GT+  GL L  +P    L +  + D+DWASDPDD +STSG  IFVG NLISW SKKQ
Sbjct: 358  YLKGTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISWWSKKQ 417

Query: 1464 HTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQA 1643
              V+RSS+EAEYRSL  A +E LW+QTLL+ELH+ S+  PV++ DN+STV ++ N ++ A
Sbjct: 418  TVVARSSAEAEYRSLALATAEALWIQTLLSELHV-SHHTPVVYCDNMSTVSLAHNHVLHA 476

Query: 1644 RTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            RTKH+E+DL F+REKV   ++ V H+PA DQ AD LTK L    F  +R +L +
Sbjct: 477  RTKHMEMDLFFVREKVSANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKL 530


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  523 bits (1348), Expect = e-162
 Identities = 262/540 (48%), Positives = 361/540 (66%), Gaps = 9/540 (1%)
 Frame = +3

Query: 222  TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 380
            TR + G+ KPKVY       G F  +  EP ++ EAL D  WK+AM  EY AL KNKTW 
Sbjct: 777  TRLQQGVRKPKVYTDGTIRYGCFTSSG-EPYDLNEALGDVNWKDAMDIEYSALMKNKTWH 835

Query: 381  ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 560
            +     GRNVIGC+WV+KIKR ADGS+ RYKARLVAKGY Q  G+D+ D FSPVVK  T 
Sbjct: 836  LVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATI 895

Query: 561  RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 740
            R+IL+IA+S+GW L Q+DV NAFLHG+L++  E+YM+QPPG+E +     VCKL KALYG
Sbjct: 896  RIILSIAVSRGWSLCQLDVQNAFLHGVLEE--EVYMQQPPGYEDSTKLNYVCKLDKALYG 953

Query: 741  LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVT 920
            LKQA +AW+ RL N L SLGF+ASKAD SLF     +                ++     
Sbjct: 954  LKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATE 1013

Query: 921  SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            +L+  LN  F +KDLG L+YFLG+E++  +DG++L+Q +YA DLL+KV M+  +      
Sbjct: 1014 ALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPL 1073

Query: 1101 XXXXXXXKFQGNPSVDGQL--YRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 1274
                     +G+P  +  +  YR +VG+LQYLT+TRP+I F+VNK+ QF+  P  LHW A
Sbjct: 1074 STSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAA 1133

Query: 1275 MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 1454
            +KR+LRYI    +LGL + +S    V+ FSD+DWA   DDRKST G+ +F+G NL+SWS+
Sbjct: 1134 VKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSA 1193

Query: 1455 KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 1634
            +KQ TVSRSS+E+EY++L +A +E++W+Q LL E+ ++S +   +W DNL   ++SANPI
Sbjct: 1194 RKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPI 1253

Query: 1635 IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 1814
              ARTKH+E+D HF+R++V  K + + ++P  DQ+AD  TKPL  +     +  LN++ L
Sbjct: 1254 FHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNLTRL 1313



 Score =  139 bits (349), Expect = 1e-29
 Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 13/344 (3%)
 Frame = +1

Query: 2329 KQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQRQDQXXXXXXXXXX 2508
            K  +   ++G  LEGYL G+   P +    + +G    NPA+ +W+ +DQ          
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDEET-VDNKGKKSPNPAFEEWEAKDQQILSYLLSSI 63

Query: 2509 XXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNSLSVREYLSKIKGY 2688
                   V    T+ E W  +E+ F+S + AR +  ++ L   KK S++V EY +K+KGY
Sbjct: 64   SREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGY 123

Query: 2689 CDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDVTSLLLSYESRLE- 2865
             D +AA G  + + + V ++L+GL  E+  +V +++++ +  +L D+ S LL++E++L+ 
Sbjct: 124  GDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKLDL 183

Query: 2866 -AAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXXXXXXXXXXXXSFGNRIH- 3039
                     GS   A    +   R     +  +                   + G  I  
Sbjct: 184  MRGGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGYIRR 243

Query: 3040 ----------CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIAT 3189
                      CQ+C    HTA +C++RF  DF P+                 +  A  AT
Sbjct: 244  SNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPD-----------------EKLAGAAT 286

Query: 3190 TDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGA 3321
                 + NWY D+GAT HIT +   L+    Y G  ++   +G+
Sbjct: 287  NSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGS 330


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  524 bits (1350), Expect = e-161
 Identities = 268/538 (49%), Positives = 362/538 (67%), Gaps = 4/538 (0%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            + HPM TR+K GI KP++    +   VEP   ++AL +  W  AM  EY AL  N TW++
Sbjct: 868  NVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSL 927

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
              LPP R  IGC+WVF++K N +GSV +YKARLVAKG+ Q  G D+ + FSPV+KP T R
Sbjct: 928  VPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 987

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
            LILT+AL+  W ++Q+DV+NAFL+G L++  E+YM+QPPGFE + ++  VCKLHKA+YGL
Sbjct: 988  LILTLALTHRWPIQQLDVNNAFLNGTLEE--EVYMQQPPGFEAS-DKNLVCKLHKAIYGL 1044

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AWF++L++ L  L F ASK D SLFI    N+             TGN+   + +
Sbjct: 1045 KQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHT 1104

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            L+  L+  F +KDLG L +FLG+E+    DG ++L+Q +Y +DLL +  M GS+      
Sbjct: 1105 LVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPM 1164

Query: 1101 XXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMK 1280
                   K      +D  LYR VVG+LQY TITRPEI+F+VNK+ QFM +PL  HW A+K
Sbjct: 1165 ISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVK 1224

Query: 1281 RLLRYISGTLDLGLQL---FKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            R+LRY+ GT   GL+L     S  L +  + D+DWASDPDDR+STSG  IF+G NL+SW 
Sbjct: 1225 RILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWW 1284

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  V+RSS+EAEYRSL  A +EV W+QTLL+EL + ++  P+I+ DNLSTV ++ NP
Sbjct: 1285 SKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV-THSTPIIFCDNLSTVALAHNP 1343

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            ++ ARTKH+E+DL F+REKV  K + V H+PA DQ AD LTK L    F  +R++L V
Sbjct: 1344 VLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQV 1401



 Score =  163 bits (413), Expect = 3e-37
 Identities = 100/368 (27%), Positives = 174/368 (47%), Gaps = 14/368 (3%)
 Frame = +1

Query: 2284 HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQW 2463
            H+++ KL  +N+L+W Q +   +KG+ L  YL      P K     +     ++ +Y+ W
Sbjct: 38   HTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNP-QIPQKFATLADRDAGHISESYLAW 96

Query: 2464 QRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKK 2643
            ++QDQ                 V+G  +SF++W  + + F SH  A+  Q + +L++   
Sbjct: 97   EQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTL 156

Query: 2644 NSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLR 2823
            ++LS+ EY+ +I+   DAL A+G  ++ ++ +  +L GL  EY++ V  I S+ +   + 
Sbjct: 157  DNLSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTID 216

Query: 2824 DVTSLLLSYESRLE-----AAALINTDGSL---------PTAHLATQTQGRNAQTPQYNK 2961
            +V +LLL +ESRL+     AAA IN   ++         P AHL   T   N   P + +
Sbjct: 217  EVETLLLGHESRLDKFKKKAAASINVTTAVTEPDPSATNPQAHL---THQNNQSGPSHRR 273

Query: 2962 XXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSF 3141
                                      CQ+C    H A  CY RF+  + P++  ++  ++
Sbjct: 274  GGRTNSRGGRFSNWAGRGRGRFAGYQCQVCHRYGHVASACYYRFDETYVPSSPLEAP-AY 332

Query: 3142 TEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGA 3321
               N++         T       NWYPDSGA++H+TN   N++    + G  ++ +GNG 
Sbjct: 333  PSNNQH---------TNPGACNNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQ 383

Query: 3322 GLDISHVG 3345
            GL I+  G
Sbjct: 384  GLHINSTG 391


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  520 bits (1339), Expect = e-161
 Identities = 260/543 (47%), Positives = 357/543 (65%)
 Frame = +3

Query: 210  HPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITN 389
            HPM+TR+K GI K KVY  F     EP    +A+ D+ W  AM KE+ ALQ+N TW +  
Sbjct: 688  HPMVTRAKNGISKKKVY--FSSHISEPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLVP 745

Query: 390  LPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLI 569
             P   N+IGC+WV+K+K   DG+V RYKARLVA+G+TQ  G+++ + FSPVVK +T R+I
Sbjct: 746  PPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLBYFETFSPVVKASTIRII 805

Query: 570  LTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQ 749
            L +ALS  W + Q+DV NAFLHG  D +  ++M+QPPGF  ++    VCKL+KALYGLKQ
Sbjct: 806  LAVALSFNWSVHQLDVQNAFLHG--DLEEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQ 863

Query: 750  ASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTSLI 929
            A +AW+ +L   L   GF+AS+AD+S+FI  S +              TG+S  QV+S I
Sbjct: 864  APRAWYNKLSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFI 923

Query: 930  DALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXX 1109
              LN  F ++DLG ++YFLG+E+  +     LSQ +Y QDLL +  M  S+         
Sbjct: 924  TRLNSSFALRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLG 983

Query: 1110 XXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLL 1289
                   G P  D  LYR  VG+LQYLT+TRP+I+FAVNK  QFM  P   HW A+KR+L
Sbjct: 984  QTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRIL 1043

Query: 1290 RYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHT 1469
            RY+ GTL  G+Q+ +S  L + G++D+DWAS PDDR+ST GY IF+G NL+SWSS KQ  
Sbjct: 1044 RYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKV 1103

Query: 1470 VSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQART 1649
            VSRSS+E+EYR+L  A SE++W+Q +L EL L S+ PP++W DN S   ++ANP+  ART
Sbjct: 1104 VSRSSAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHART 1163

Query: 1650 KHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSLEL 1829
            KH+E+DLHFIR+ V  K +++ ++P+++Q+AD  TK +    F   R +L+V   S + L
Sbjct: 1164 KHIEMDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSV-VPSPVSL 1222

Query: 1830 TGD 1838
             GD
Sbjct: 1223 RGD 1225



 Score =  154 bits (389), Expect = 2e-34
 Identities = 94/347 (27%), Positives = 171/347 (49%), Gaps = 3/347 (0%)
 Frame = +1

Query: 2284 HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQW 2463
            H++ +KL   N+++W+  +   +   G E +++G      K+ P ++    + NP ++ W
Sbjct: 137  HALPIKLDRNNYILWRTQMENVVFANGFEDHIEG-----LKICPPQKTSSGETNPDFVMW 191

Query: 2464 QRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKK 2643
            +R D+                 +VG  +S   W  LE  FS+ S AR+MQ +++ Q  +K
Sbjct: 192  RRFDRMILSWIYSSLTPEIMGQIVGYQSSHAAWFALERIFSASSRARVMQLRLEFQTTRK 251

Query: 2644 NSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLR 2823
             SL++ EY+ K+K   D LAA+G  + +RDQ++ +L GLG++Y+++V S+ +        
Sbjct: 252  GSLTMMEYILKLKSLADNLAAIGEPVTDRDQILQLLGGLGADYNSIVASLTAP-----FY 306

Query: 2824 DVTSLLLSYESRLEAAALINTDGSLPT-AHLAT-QTQGRNAQTPQYNKXXXXXXXXXXXX 2997
                  LS+++ +    +I+ + + P   H    ++ G+N Q+                 
Sbjct: 307  SPMKQRLSFQNSVAEDNVISANLATPQYQHFNNKRSSGQNRQS----------GFNTRRG 356

Query: 2998 XXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTP-NTNSQSQRSFTEGNKNFAQSS 3174
                   S  +R  CQ+CG   HT  +CY+RF+ +F   N N  + ++     KN  Q  
Sbjct: 357  TNGGRSQSSQHRPQCQLCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKN--QVQ 414

Query: 3175 AMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGN 3315
            AM+A+    S+  W+ D+GATHH++     L+    Y G+ K+ +GN
Sbjct: 415  AMMASPSTISDEAWFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGN 461


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  518 bits (1334), Expect = e-159
 Identities = 262/538 (48%), Positives = 364/538 (67%), Gaps = 4/538 (0%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            + HPMITR+K G  KPKV+ A +    EP +V+ AL D  W +AM  EY+AL  N+TWT+
Sbjct: 888  NAHPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTL 943

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
              LP  R  IGC+W+F++K N DG+V+++KARLVAKG+ Q AG DFT+ FSPV+KP T R
Sbjct: 944  VPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIR 1003

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
            +ILT+A++  W ++Q+DV+NAFL+G+L +  E+YM QP GFE + ++  VCKLHK+LYGL
Sbjct: 1004 IILTLAVTFKWSVQQIDVNNAFLNGILQE--EVYMTQPAGFEAS-DKSLVCKLHKSLYGL 1060

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AW++RL   L  LGF  SK D SL I     +             TG++   ++ 
Sbjct: 1061 KQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISD 1120

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            LI  LN  F +K LG++ YFLG+E+H+   G +LL+Q +Y +DLL K  M  S       
Sbjct: 1121 LIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAPIGSPM 1180

Query: 1101 XXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMK 1280
                   K+  +   D  LYR +VG+LQY T+TRP+I F+VNK+ QFM +PL+ HWKA+K
Sbjct: 1181 VSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVK 1240

Query: 1281 RLLRYISGTLDLGLQLF---KSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            R+LRY++GTL  GL L     SP   +  +SD+DWA+D DDR+STSG CI+ G NLISW 
Sbjct: 1241 RILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWG 1300

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  V+RSS+EAEYRS+ +  +++LW+Q+LL EL +    P ++  DNLS V +S NP
Sbjct: 1301 SKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVSLSHNP 1359

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            I+ ++TKH+E+D+HF+REKV +K + + H+PA DQ+AD LTKPL     T +R +L V
Sbjct: 1360 ILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTKLKV 1417



 Score =  152 bits (384), Expect = 9e-34
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 24/378 (6%)
 Frame = +1

Query: 2290 VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 2469
            + +KL ++NFL+W Q +   +  + L  ++      P +    E+  L   +  Y QW  
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59

Query: 2470 QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 2649
            +DQ                 V+    + E+W  +   F+S   +R  Q + +L+N KK S
Sbjct: 60   KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119

Query: 2650 LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 2829
             SV EYL +IK   ++L AVG  ++E++QV  +L GL  E+++ V+ + S+ +   + DV
Sbjct: 120  RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179

Query: 2830 TSLLLSYESRLE--AAALINTDGSLPTAHLATQTQGRNAQ-------TPQYNKXXXXXXX 2982
             +LLL  E++ E     L +   S   AH  T     N++       T  YN        
Sbjct: 180  EALLLLQEAQFEKFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGRG 239

Query: 2983 XXXXXXXXXXXXSFGN--RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNK 3156
                           N  ++ CQIC   NH A  C+ R++P    N NS+        N+
Sbjct: 240  RGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQ-AMNQNSRGGYQVGPSNR 298

Query: 3157 -----NFAQSSAMIA--------TTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHG 3297
                  + + +A +A          DQ S   WYPDSGA+HH+T + +NL++++ Y G  
Sbjct: 299  PQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQD 358

Query: 3298 KLQIGNGAGLDISHVGSS 3351
            ++ +GNG G+ I  +G S
Sbjct: 359  QVVMGNGQGVSIHSLGQS 376


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  518 bits (1334), Expect = e-159
 Identities = 262/538 (48%), Positives = 364/538 (67%), Gaps = 4/538 (0%)
 Frame = +3

Query: 204  HTHPMITRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            + HPMITR+K G  KPKV+ A +    EP +V+ AL D  W +AM  EY+AL  N+TWT+
Sbjct: 888  NAHPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTL 943

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
              LP  R  IGC+W+F++K N DG+V+++KARLVAKG+ Q AG DFT+ FSPV+KP T R
Sbjct: 944  VPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIR 1003

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
            +ILT+A++  W ++Q+DV+NAFL+G+L +  E+YM QP GFE + ++  VCKLHK+LYGL
Sbjct: 1004 IILTLAVTFKWSVQQIDVNNAFLNGILQE--EVYMTQPAGFEAS-DKSLVCKLHKSLYGL 1060

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AW++RL   L  LGF  SK D SL I     +             TG++   ++ 
Sbjct: 1061 KQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISD 1120

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDG-MLLSQKRYAQDLLRKVQMTGSRGXXXXX 1100
            LI  LN  F +K LG++ YFLG+E+H+   G +LL+Q +Y +DLL K  M  S       
Sbjct: 1121 LIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAPIGSPM 1180

Query: 1101 XXXXXXXKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMK 1280
                   K+  +   D  LYR +VG+LQY T+TRP+I F+VNK+ QFM +PL+ HWKA+K
Sbjct: 1181 VSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVK 1240

Query: 1281 RLLRYISGTLDLGLQLF---KSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 1451
            R+LRY++GTL  GL L     SP   +  +SD+DWA+D DDR+STSG CI+ G NLISW 
Sbjct: 1241 RILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWG 1300

Query: 1452 SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 1631
            SKKQ  V+RSS+EAEYRS+ +  +++LW+Q+LL EL +    P ++  DNLS V +S NP
Sbjct: 1301 SKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVSLSHNP 1359

Query: 1632 IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 1805
            I+ ++TKH+E+D+HF+REKV +K + + H+PA DQ+AD LTKPL     T +R +L V
Sbjct: 1360 ILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTKLKV 1417



 Score =  152 bits (384), Expect = 9e-34
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 24/378 (6%)
 Frame = +1

Query: 2290 VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 2469
            + +KL ++NFL+W Q +   +  + L  ++      P +    E+  L   +  Y QW  
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59

Query: 2470 QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 2649
            +DQ                 V+    + E+W  +   F+S   +R  Q + +L+N KK S
Sbjct: 60   KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119

Query: 2650 LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 2829
             SV EYL +IK   ++L AVG  ++E++QV  +L GL  E+++ V+ + S+ +   + DV
Sbjct: 120  RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179

Query: 2830 TSLLLSYESRLE--AAALINTDGSLPTAHLATQTQGRNAQ-------TPQYNKXXXXXXX 2982
             +LLL  E++ E     L +   S   AH  T     N++       T  YN        
Sbjct: 180  EALLLLQEAQFEKFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGRG 239

Query: 2983 XXXXXXXXXXXXSFGN--RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNK 3156
                           N  ++ CQIC   NH A  C+ R++P    N NS+        N+
Sbjct: 240  RGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQ-AMNQNSRGGYQVGPSNR 298

Query: 3157 -----NFAQSSAMIA--------TTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHG 3297
                  + + +A +A          DQ S   WYPDSGA+HH+T + +NL++++ Y G  
Sbjct: 299  PQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQD 358

Query: 3298 KLQIGNGAGLDISHVGSS 3351
            ++ +GNG G+ I  +G S
Sbjct: 359  QVVMGNGQGVSIHSLGQS 376


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  507 bits (1306), Expect = e-158
 Identities = 254/537 (47%), Positives = 355/537 (66%), Gaps = 8/537 (1%)
 Frame = +3

Query: 222  TRSKAGIFKPKVYG------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 383
            TR ++GI K K+Y       +   +  EP  + EAL D  WKEAM  EY+AL KNKTW  
Sbjct: 496  TRLQSGIRKEKIYTDGTVRYSCFTSSGEPQTLHEALGDKNWKEAMDSEYQALMKNKTWHR 555

Query: 384  TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 563
                 G+N+I C+WV+K+KR ADGS+ RYKARLVAKG+ Q  G+D+ D F PVVK  T R
Sbjct: 556  VPSKKGQNIIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFRPVVKAATIR 615

Query: 564  LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 743
             IL+IA+S+GW LRQ+DV NAFLHG+L++DV  +M QPPG+E  K+ Y VCKL KALYGL
Sbjct: 616  TILSIAISRGWTLRQLDVQNAFLHGVLEEDV--FMRQPPGYE-QKDGY-VCKLDKALYGL 671

Query: 744  KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXXTGNSDLQVTS 923
            KQA +AW+ RL   L  LGF++SK+D SLF     +                +S +   +
Sbjct: 672  KQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDIIVASSSIVATNA 731

Query: 924  LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXX 1103
            L+  LN  F +KDLG+LHYFLG+E+    DG++L+Q++YA D+L++V M+  +       
Sbjct: 732  LLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLS 791

Query: 1104 XXXXXXKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAM 1277
                    +GNP    D   YR +VG+LQYLT+TRP+++F+VNK+ Q++      HW A 
Sbjct: 792  ISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAA 851

Query: 1278 KRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSK 1457
            KR+LRY+  T+ LGL++ KS  L V+ FSD+DWA   DDR+ST G+ +F+G NL+SWS++
Sbjct: 852  KRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSAR 911

Query: 1458 KQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPII 1637
            KQ TVSRSS+EAEY++L +A +E++W+QTLL EL ++  +   +W DN+   +M+ANP+ 
Sbjct: 912  KQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVF 971

Query: 1638 QARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVS 1808
             ARTKH+E+D HF+RE+V  K + V +I   DQ+AD  TK L  +     RN LN++
Sbjct: 972  HARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLT 1028



 Score =  136 bits (342), Expect = 7e-29
 Identities = 97/368 (26%), Positives = 155/368 (42%), Gaps = 13/368 (3%)
 Frame = +1

Query: 2281 GHSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEG------LLKV 2442
            G  ++ KLT +N  +W   I TTL+G  LE ++  + + P   I  E+        ++  
Sbjct: 16   GLQISEKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIP 75

Query: 2443 NPAYIQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKI 2622
            NP Y  W  QDQ                 V G  T+ + W  ++  FS  S A  +   +
Sbjct: 76   NPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLL 135

Query: 2623 QLQNLKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSII-- 2796
             L   +K  +S+ EY++K++   D +AA G  ++E + V ++++GL SE+DA V  ++  
Sbjct: 136  ALTTTQKGPMSISEYIAKMRSLADEMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMAT 195

Query: 2797 SKTENCNLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQ---YNKXX 2967
            ++    ++  V S LLSYE+R+       T  S   A+      GR + T          
Sbjct: 196  ARIAPVSISHVYSQLLSYENRIRIRQAYLTT-SANAANRGGGRGGRGSSTGNRGGRRGGF 254

Query: 2968 XXXXXXXXXXXXXXXXXSFGN--RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSF 3141
                               GN  R  CQ+C    H A  C++R++  + P+         
Sbjct: 255  GRGGRGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPD--------- 305

Query: 3142 TEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGA 3321
                    +     AT   G + NWY D+GAT HIT     L     Y G  ++   +G 
Sbjct: 306  --------EKLGGAATYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGE 357

Query: 3322 GLDISHVG 3345
            G+ I HVG
Sbjct: 358  GMSIKHVG 365