BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00002189
         (13,672 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]...  2721   0.0  
ref|YP_008815995.1| Ycf1 (chloroplast) [Lindenbergia philippensi...  2679   0.0  
ref|YP_009117280.1| hypothetical chloroplast RF19 (chloroplast) ...  2578   0.0  
ref|YP_009183651.1| hypothetical chloroplast RF19 (chloroplast) ...  2504   0.0  
ref|YP_004563839.1| Ycf1 protein [Olea europaea subsp. cuspidata...  2479   0.0  
ref|YP_004376479.1| Ycf1 protein [Olea europaea subsp. europaea]...  2479   0.0  
ref|YP_004564555.1| Ycf1 protein [Olea europaea subsp. maroccana...  2478   0.0  
ref|YP_003359417.2| Ycf1 (chloroplast) [Olea europaea] gi|291059...  2477   0.0  
ref|YP_004564062.1| Ycf1 protein [Olea woodiana subsp. woodiana]...  2477   0.0  
emb|CBR23797.1| Ycf1 protein (chloroplast) [Olea europaea subsp....  2472   0.0  
emb|CBR23889.1| Ycf1 protein (chloroplast) [Olea europaea subsp....  2472   0.0  
ref|YP_009110660.1| Ycf1 protein (chloroplast) [Hesperelaea palm...  2458   0.0  
ref|YP_009162320.1| photosystem I assembly protein Ycf1 (chlorop...  2445   0.0  
gb|AMQ33800.1| hypothetical chloroplast RF19 (chloroplast) [Stac...  2417   0.0  
ref|YP_009239241.1| ycf1 (chloroplast) [Pedicularis ishidoyana] ...  2414   0.0  
gb|AMQ33624.1| hypothetical chloroplast RF19 (chloroplast) [Stac...  2414   0.0  
gb|AMQ32920.1| hypothetical chloroplast RF19 (chloroplast) [Sten...  2414   0.0  
gb|AMQ33448.1| hypothetical chloroplast RF19 (chloroplast) [Sten...  2412   0.0  
gb|AMQ33096.1| hypothetical chloroplast RF19 (chloroplast) [Sten...  2408   0.0  
gb|AMQ33184.1| hypothetical chloroplast RF19 (chloroplast) [Hapl...  2406   0.0  

>ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]
             gi|438687662|emb|CCP47191.1| YCF1 protein (chloroplast)
             [Tectona grandis] gi|438688346|emb|CCP47280.1| YCF1
             protein (chloroplast) [Tectona grandis]
             gi|438688470|emb|CCP47369.1| YCF1 protein (chloroplast)
             [Tectona grandis]
          Length = 1898

 Score = 2721 bits (7053), Expect = 0.0
 Identities = 1411/1842 (76%), Positives = 1500/1842 (81%), Gaps = 6/1842 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 70    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 129

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 130   ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 189

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 190   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 249

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLFITCVYYLGRIPSP+F                          A
Sbjct: 250   LVSELRNSMARIFSILLFITCVYYLGRIPSPLFTKKLKETSKTEERVESEEERDVEIETA 309

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 12749
             SEMKGTKQEQEG             EKADPNKIDETEEIRVNGKE+EFHFRFTETGYK R
Sbjct: 310   SEMKGTKQEQEGSTEEDPSPSFFLEEKADPNKIDETEEIRVNGKENEFHFRFTETGYKNR 369

Query: 12748 PVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYIKN 12569
             PVSEESYLMN+NE+ DNSRFK FD+KTEN +P     +K LV LLFDSKRWNRP RYIKN
Sbjct: 370   PVSEESYLMNINESRDNSRFKKFDEKTENKDPFFF--DKALVTLLFDSKRWNRPLRYIKN 427

Query: 12568 THIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNELY 12389
                D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIKRRIS  TL+KF SNELY
Sbjct: 428   NQFDRAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKRRISPLTLKKFLSNELY 487

Query: 12388 NPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPFLN 12209
             NPWV+TNKQKGKSFNNEFLNRI+ALDKE ISLNILETRTRL NDD  KKYLSKRYDPFLN
Sbjct: 488   NPWVYTNKQKGKSFNNEFLNRIKALDKEDISLNILETRTRLCNDDSTKKYLSKRYDPFLN 547

Query: 12208 RSYRKIIYKNLSPSILKKTLIENFIE--KFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
              SYRK IYKNLSPS LKKTLIEN I+  KFGINRIHGILL D DYQ+FEQKKNRFDKK +
Sbjct: 548   GSYRKTIYKNLSPSTLKKTLIENSIDMDKFGINRIHGILLPDADYQEFEQKKNRFDKKPL 607

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFS-EGRIDYERRTKYLKYLLTKIVTDANGQ 11858
             STEIVDF TFISK VRES +TN N KG SLFS E RID ++ T +  YLLTKI+TDANGQ
Sbjct: 608   STEIVDFFTFISKFVRESGATNLNPKGFSLFSSEERIDSKKGTIHFNYLLTKILTDANGQ 667

Query: 11857 XXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIFXXXXX 11678
                           K+PRWSYKLITDLEQQSGEYQE+VPVDH+IRSRK KRVVIF     
Sbjct: 668   KISRKSIRIKEISKKIPRWSYKLITDLEQQSGEYQENVPVDHQIRSRKGKRVVIFTANKE 727

Query: 11677 XXXXXXXXXXXXXXXE-IALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHSPLF 11501
                            + +ALIRYSQQSDFRRG+IKGSMR+QRRK VILELFQANVHSPLF
Sbjct: 728   NTDPNTTDTNMPDQIDEVALIRYSQQSDFRRGIIKGSMRAQRRKIVILELFQANVHSPLF 787

Query: 11500 LDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKARIE 11321
             L+++QKS  FSFDISG IK  FRNW    E FKIVEYT+ QT             KARIE
Sbjct: 788   LERLQKSPFFSFDISGLIKLIFRNWGGGREAFKIVEYTKEQTKREEKKEKNKRKEKARIE 847

Query: 11320 IAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQEWNR 11141
             IAEAWD+IP AQVIRGCMLLTQ I RKYILLPS IIAKNIGRI L QLPEWSED QEWN+
Sbjct: 848   IAEAWDSIPFAQVIRGCMLLTQSIFRKYILLPSFIIAKNIGRIFLLQLPEWSEDLQEWNK 907

Query: 11140 EMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXXXXX 10961
             E+++KCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPW KSK+ SS            
Sbjct: 908   EIHLKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWHKSKLRSSQKDLMKKEKEKD 967

Query: 10960 DFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKLLRK 10781
             DFCFLTVWGMETELPFGSPRKRPSFFKPI  EF          YFRVL +FK KTKLLRK
Sbjct: 968   DFCFLTVWGMETELPFGSPRKRPSFFKPILKEFEKKIGKWKKNYFRVLTVFKGKTKLLRK 1027

Query: 10780 VSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQIIHE 10601
             VSKETKKW+IKSVI  KKIIKELSK+NPILLFRLREVEVY             SNQIIHE
Sbjct: 1028  VSKETKKWIIKSVIFIKKIIKELSKVNPILLFRLREVEVYESSKIKEEKDSIISNQIIHE 1087

Query: 10600 SFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNKTSYNA 10421
             SFSQ  SP+WTN SLTEKKMKDLTDRT+TI+NQIERI KEKKKVTP+INNLSPNKTSYNA
Sbjct: 1088  SFSQIASPSWTNSSLTEKKMKDLTDRTTTIQNQIERITKEKKKVTPKINNLSPNKTSYNA 1147

Query: 10420 KRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTKKILDK 10241
             KRFEKWQILKRRNAR+ICKLP F KFFIE+IYTDIFLS+INIPR+NTE FLE TKKI+DK
Sbjct: 1148  KRFEKWQILKRRNARLICKLPPFFKFFIEKIYTDIFLSIINIPRINTELFLELTKKIIDK 1207

Query: 10240 SIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAYVFYKL 10061
             SIYNNERKQ+              ISTIKK LDNISN K NSH FYDLSYVSQAYVFYKL
Sbjct: 1208  SIYNNERKQE--RINKKKKTPIPFISTIKKPLDNISNIK-NSHIFYDLSYVSQAYVFYKL 1264

Query: 10060 SQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQWKNWLR 9881
             SQIQVS+S  LRSV++YQ IPFFLKP+IKDSFETQG+V  KL DKK P+YEMNQWKNWLR
Sbjct: 1265  SQIQVSSS--LRSVVQYQRIPFFLKPKIKDSFETQGIVHLKLADKKHPSYEMNQWKNWLR 1322

Query: 9880  GHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSKKQFEVDLLSN 9701
             G YQY LSQIRWSR +PEKWRN VH+  IAKK+NLSK  SYEKDQLIDSKKQFEV  LSN
Sbjct: 1323  GRYQYHLSQIRWSRLIPEKWRNTVHQHRIAKKKNLSKRPSYEKDQLIDSKKQFEVYSLSN 1382

Query: 9700  QKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFSMLRSIPI 9521
             QK+NF KYYRYDLLSYKF+NYE KTECFFYRSPFQGNKNQEISYNTPKET F MLR+IPI
Sbjct: 1383  QKDNFLKYYRYDLLSYKFLNYENKTECFFYRSPFQGNKNQEISYNTPKETLFDMLRNIPI 1442

Query: 9520  NNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIRTNNSQKN 9341
              N L  V+ILYMEK  DRKYFDWKI NF LRQKVDIE WI+I+TNRNQNT+IRTNNSQ  
Sbjct: 1443  KNDLGNVNILYMEKPPDRKYFDWKIFNFYLRQKVDIETWIIINTNRNQNTQIRTNNSQII 1502

Query: 9340  SKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYNAYKTKPW 9161
             SKKDLFYL IPEIN PNSHKGFFDW+GMNEKM K PISNLE WFFPEFVLLY AYKTKPW
Sbjct: 1503  SKKDLFYLMIPEINPPNSHKGFFDWMGMNEKMPKHPISNLELWFFPEFVLLYRAYKTKPW 1562

Query: 9160  FIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRGDLGSVLS 8981
             FIP                          KGSFL+ SNKKH+NQEEKEPTSRGD  SVLS
Sbjct: 1563  FIP------SKLLLLNLNSSENKKINEKEKGSFLVVSNKKHQNQEEKEPTSRGDRRSVLS 1616

Query: 8980  QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRMINNIKVY 8801
             QQKDIEE+  RS              TEAELDFFLKRYLLFQLRWD+TLNQRMINNIKVY
Sbjct: 1617  QQKDIEENYTRSDMQKGKKKKQYKSNTEAELDFFLKRYLLFQLRWDETLNQRMINNIKVY 1676

Query: 8800  CLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFGKKDGQFI 8621
             CLLLRL+DPRKITISS+QKREMSLDIMLIQKNLTL+ELMKKGVLI+EPIRL GKKDGQFI
Sbjct: 1677  CLLLRLIDPRKITISSIQKREMSLDIMLIQKNLTLSELMKKGVLILEPIRLSGKKDGQFI 1736

Query: 8620  MYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDLLVPENIL 8441
             MYQTIGISLVHKSKHQTNQKYQE+RYVSKNN DE IS +QR+TGNR++N FDLLVPENIL
Sbjct: 1737  MYQTIGISLVHKSKHQTNQKYQERRYVSKNNFDETISSHQRITGNRDQNHFDLLVPENIL 1796

Query: 8440  SFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREEN--QLMKFK 8267
             SFR RRK RILICFNSKNRN IDRN VF N KNVKNSS+VSHDNN LDRE+N  QLMK K
Sbjct: 1797  SFRRRRKLRILICFNSKNRNYIDRNPVFWNGKNVKNSSQVSHDNNSLDREKNQLQLMKLK 1856

Query: 8266  LFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC 8141
             LFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC
Sbjct: 1857  LFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC 1898


>ref|YP_008815995.1| Ycf1 (chloroplast) [Lindenbergia philippensis]
             gi|557136922|emb|CDI43976.1| Ycf1 (chloroplast)
             [Lindenbergia philippensis]
          Length = 1871

 Score = 2679 bits (6944), Expect = 0.0
 Identities = 1379/1847 (74%), Positives = 1488/1847 (80%), Gaps = 10/1847 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 31    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 90

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 91    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 150

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQN+SIRSNKYIRSNKY
Sbjct: 151   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNNSIRSNKYIRSNKY 210

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPIF                          A
Sbjct: 211   LVAELRNSMARIFSILLFLTCVYYLGRIPSPIFTKKLKETPKTEQRVESEEERDLEIETA 270

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 12749
             S+MKGTKQEQEG             EKA+PNKIDETEEIRVNGKEDEFHFRFTETGYKKR
Sbjct: 271   SKMKGTKQEQEGSTEEDPSPSFFSEEKANPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 330

Query: 12748 PVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYIKN 12569
             PVSEESYLMN+NEN++NSRFKIF+KKT+N +P    FEKPLVNLLFDSKRWNRP RYIKN
Sbjct: 331   PVSEESYLMNINENHENSRFKIFEKKTKNKDPFFFFFEKPLVNLLFDSKRWNRPLRYIKN 390

Query: 12568 THIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNELY 12389
             TH DG V+NEMSQYFF+IC+SDGKERISFTY PSLSIFFEMIKRRIS  TLEK + N+L 
Sbjct: 391   THFDGTVRNEMSQYFFDICKSDGKERISFTYLPSLSIFFEMIKRRISPTTLEKSSPNKLS 450

Query: 12388 NPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPFLN 12209
             N WV+TN QKGKSFNNEF+NRIEALDKE  SLN+LETR RL NDDY K+YLSKRYDPFLN
Sbjct: 451   NLWVYTNTQKGKSFNNEFINRIEALDKEFSSLNMLETRIRLCNDDYTKEYLSKRYDPFLN 510

Query: 12208 RSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSIST 12029
             RSYRK IYKN SP ILKKTL+ENFIE FGINRIHGILLSDTD Q+ EQK NRFDKK +ST
Sbjct: 511   RSYRKTIYKNFSPPILKKTLVENFIENFGINRIHGILLSDTDCQELEQKINRFDKKPLST 570

Query: 12028 EIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYLLTKIVTDANGQXXX 11849
             EIVDFLTFIS+VVR+S S + NWK L LFSE RI+    TK+LKYLLT+IVT  N Q   
Sbjct: 571   EIVDFLTFISRVVRKSESIDLNWKVLFLFSEERIE----TKFLKYLLTQIVTGTNDQKII 626

Query: 11848 XXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIFXXXXXXXX 11669
                        KVPRWSYKL+TDLEQQSGEY EDVPVDH+IRSRK KRVVIF        
Sbjct: 627   RKSTKIKEISKKVPRWSYKLMTDLEQQSGEYHEDVPVDHQIRSRKGKRVVIFTANKENTD 686

Query: 11668 XXXXXXXXXXXXE--IALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHSPLFLD 11495
                            +ALIRYSQQSDFRRG+IKGSMRSQRRK VILELFQANVHS LFLD
Sbjct: 687   SNTDTNTLDQTDTDEVALIRYSQQSDFRRGIIKGSMRSQRRKIVILELFQANVHSALFLD 746

Query: 11494 KIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKARIEIA 11315
             ++QK   FSFDIS  IK   RNW  +G+ FKI+EYTE QT              ARIEIA
Sbjct: 747   RVQKPPFFSFDISRLIKLIVRNWAGKGKAFKILEYTEEQTKREEKKEKNKRKENARIEIA 806

Query: 11314 EAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQEWNREM 11135
             EAWDTIP AQVIRGCMLLTQ   RKYILLPS IIAKN+GRILLFQLPEWS D Q+W+RE+
Sbjct: 807   EAWDTIPFAQVIRGCMLLTQSTFRKYILLPSFIIAKNVGRILLFQLPEWSVDLQKWDREI 866

Query: 11134 YVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXXXXXDF 10955
             +VKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPW+KSK+GSS            DF
Sbjct: 867   HVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWNKSKLGSSRKNLMKKKKEKDDF 926

Query: 10954 CFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKLLRKVS 10775
             CFLTVWGMETE PFGSPRKR SFFKPIF EF         KY RVL++FKRK KLLRK+S
Sbjct: 927   CFLTVWGMETEFPFGSPRKRLSFFKPIFTEFEKKIGKFKKKYSRVLLVFKRKKKLLRKLS 986

Query: 10774 KETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQIIHESF 10595
             KETK+W+IK  +L KK  KELSK+NPILLF+LREVE+Y             SNQIIHESF
Sbjct: 987   KETKRWIIKITLLIKKKRKELSKVNPILLFQLREVEIYESREFKEEKDSLRSNQIIHESF 1046

Query: 10594 SQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNKTSYNAKR 10415
             S   SP+WTN S TEKK+KDL DRTSTI NQIE I K+KKKVTPRINNLSPNKT+YNAKR
Sbjct: 1047  SHIASPSWTNSSFTEKKLKDLADRTSTILNQIEIISKDKKKVTPRINNLSPNKTNYNAKR 1106

Query: 10414 FEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTKKILDKSI 10235
             FEKWQILKR NARIICKLP FLKFFIERIYTD+FLS+INI +MNTE FLES KKI+DKSI
Sbjct: 1107  FEKWQILKRINARIICKLPLFLKFFIERIYTDLFLSIINIAKMNTELFLESIKKIIDKSI 1166

Query: 10234 YNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAYVFYKLSQ 10055
              NNERKQ+              IST KKSLDNI NSKTNSHTFYDLSYVSQAYVFYKLSQ
Sbjct: 1167  SNNERKQE--IINKKKKNPIPFISTRKKSLDNIRNSKTNSHTFYDLSYVSQAYVFYKLSQ 1224

Query: 10054 IQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQWKNWLRGH 9875
             IQVSNSYKLRSVL YQEIPFFLKPEIK+S ET+ +V SKLGDKKLP YEMNQWKNWL+GH
Sbjct: 1225  IQVSNSYKLRSVLHYQEIPFFLKPEIKNSLETRKVVHSKLGDKKLPIYEMNQWKNWLKGH 1284

Query: 9874  YQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSKKQFEVDLLSNQK 9695
             YQY+LSQIRWSR +PEKWRN VH+RHIAK+ENL K HSYEKDQL+DS K+ EV  +SNQK
Sbjct: 1285  YQYNLSQIRWSRLIPEKWRNTVHQRHIAKRENLGKCHSYEKDQLMDSPKKLEVYSVSNQK 1344

Query: 9694  ENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFSMLRSIPINN 9515
             ENF+K YRYDLLS KF+NYE K ECFFYRSPFQGNKNQEI YNT KETFF MLR+ PI N
Sbjct: 1345  ENFKKDYRYDLLSSKFLNYENKAECFFYRSPFQGNKNQEICYNTSKETFFDMLRNSPIKN 1404

Query: 9514  Y------LEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIRTNN 9353
             Y      L  VDILYM+K ADRKYFDWKI+NF LRQKVD EAWI IDTNRNQNT+I TNN
Sbjct: 1405  YYYLNNNLGRVDILYMKKTADRKYFDWKIINFYLRQKVDSEAWITIDTNRNQNTQILTNN 1464

Query: 9352  SQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYNAYK 9173
             SQ  SKKDL YL IPE NLPNSHKGFFDW+GMNEKMLK PISNLE WF PEFVLLYNAYK
Sbjct: 1465  SQIISKKDLSYLMIPEKNLPNSHKGFFDWMGMNEKMLKHPISNLELWFLPEFVLLYNAYK 1524

Query: 9172  TKPWFIP--XXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRGD 8999
             TKPWFIP                            K SFLI S KK+RNQ+EKEPTSRGD
Sbjct: 1525  TKPWFIPSQLLLLNFLNLNKNEKNSSENKKINEKEKRSFLITSEKKYRNQKEKEPTSRGD 1584

Query: 8998  LGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRMI 8819
             LGSVLSQQKDIEE++ RS             KTEAELDFFLKRY LFQLRW DTLNQ+MI
Sbjct: 1585  LGSVLSQQKDIEENDVRSNMKKGKKKKQYKNKTEAELDFFLKRYFLFQLRWGDTLNQKMI 1644

Query: 8818  NNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFGK 8639
             NNIKVYCLLLRL+DPRK+TISS+ KREMSLDIMLIQKNLTLTELMK+GVLIIEPIRL GK
Sbjct: 1645  NNIKVYCLLLRLIDPRKMTISSILKREMSLDIMLIQKNLTLTELMKRGVLIIEPIRLSGK 1704

Query: 8638  KDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDLL 8459
             KDGQFIMYQTIGISL+HKSK QTNQKYQEQRY SKN+ DEAIS  QR+  NR+KNRF+L 
Sbjct: 1705  KDGQFIMYQTIGISLIHKSKRQTNQKYQEQRYDSKNHFDEAISTQQRIIENRDKNRFNLF 1764

Query: 8458  VPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQL 8279
             +PENILSFR RRK RILICFNSKNRN++DRN VF NEKN+KNS++VSHDN HL RE+NQL
Sbjct: 1765  IPENILSFRRRRKLRILICFNSKNRNNMDRNPVFWNEKNIKNSTQVSHDNKHLGREKNQL 1824

Query: 8278  MKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKICG 8138
             MK KLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLR++LYPRLKICG
Sbjct: 1825  MKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRVYLYPRLKICG 1871


>ref|YP_009117280.1| hypothetical chloroplast RF19 (chloroplast) [Premna microphylla]
             gi|748013964|gb|AJE28434.1| hypothetical chloroplast RF19
             (chloroplast) [Premna microphylla]
          Length = 1891

 Score = 2578 bits (6681), Expect = 0.0
 Identities = 1343/1867 (71%), Positives = 1457/1867 (78%), Gaps = 30/1867 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKRFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV ELRNSMARIFSILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELRNSMARIFSILLFITCVYYLGRIPSPLFTKKLKETSKTEERVESEEERDVEIETE 269

Query: 12931 --------------------ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEI 12812
                                 AS+MKGTKQEQEG             EKADPNKIDETEEI
Sbjct: 270   TSKTEERVESEEERDVEIETASKMKGTKQEQEGSTEEDPPPSFFSEEKADPNKIDETEEI 329

Query: 12811 RVNGKEDEFHFRFTETGYKKRPVSEESYLMNVNENYDNSRFK-IFDKKTENNEPXXXXFE 12635
             RV+G+E+EFHFRFTETGYK RPV EESYLMN+NEN DNSRFK  FD+KTEN +      +
Sbjct: 330   RVDGRENEFHFRFTETGYKNRPVFEESYLMNINENQDNSRFKNYFDEKTENKKDPLFF-D 388

Query: 12634 KPLVNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIF 12455
             KPLV LLFDSKRWNRPFRYIKN     AV+ EMSQYFF ICQSDGKERISFTYPPSLSIF
Sbjct: 389   KPLVTLLFDSKRWNRPFRYIKNNQFGKAVRKEMSQYFFEICQSDGKERISFTYPPSLSIF 448

Query: 12454 FEMIKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETR 12275
              EMIKRRI  P LE+F+ NELYNPWV+TN+QKGKSFNNEFLNRI+ALDKE ISLNI ETR
Sbjct: 449   LEMIKRRIPAPRLEEFSFNELYNPWVYTNRQKGKSFNNEFLNRIKALDKEDISLNIFETR 508

Query: 12274 TRLYNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILL 12095
             TRL NDD PK+YLSK YDP LN SYRK IYKNLSPS LKK LIENFIEKFGINRIHG+LL
Sbjct: 509   TRLCNDDSPKEYLSKSYDPLLNGSYRKTIYKNLSPSTLKKLLIENFIEKFGINRIHGLLL 568

Query: 12094 SDTDYQKFEQKKNRFDKKSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYER 11915
              D DYQ+FEQK NRFDKK +ST IVDFLT ISK VRES STN N KGL +    +  +++
Sbjct: 569   PDADYQEFEQKINRFDKKPLSTGIVDFLTLISKFVRESGSTNLNPKGLFIVFRRKNRFQK 628

Query: 11914 RTKYLKYLLTKIVTDANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVD 11735
             R K   YLLTKIVTD NGQ              K+PRWSYKLITDLEQQSGEYQEDVP+D
Sbjct: 629   RNKIFNYLLTKIVTDVNGQKISRKSIRIKEISKKIPRWSYKLITDLEQQSGEYQEDVPID 688

Query: 11734 HEIRSRKAKRVVIFXXXXXXXXXXXXXXXXXXXXE-----IALIRYSQQSDFRRGLIKGS 11570
             H+IRSRK KRVVIF                          +ALIRYSQQSDFRRG+IKGS
Sbjct: 689   HQIRSRKGKRVVIFTANKENTDPNTDPNTTDTNMPDQIEEMALIRYSQQSDFRRGIIKGS 748

Query: 11569 MRSQRRKTVILELFQANVHSPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEY 11390
             MR+QRRK VILELFQANV+SPLFL+++QK  LFSFDISG IK  FRN + +G+ FKIVEY
Sbjct: 749   MRAQRRKIVILELFQANVYSPLFLERLQKPPLFSFDISGLIKLIFRNCVGKGKAFKIVEY 808

Query: 11389 TENQTXXXXXXXXXXXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIA 11210
             T+ QT             KARIEIAEAWD+IP AQVIRGCMLLTQ I RKYILLPS IIA
Sbjct: 809   TKEQTKREEERKEQKRKEKARIEIAEAWDSIPFAQVIRGCMLLTQSIFRKYILLPSFIIA 868

Query: 11209 KNIGRILLFQLPEWSEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCL 11030
             KNIGRI L QLPEWSED QEWNRE+++KCTYNGVPLSETEFPKNWLTDGIQIKILFPFCL
Sbjct: 869   KNIGRIFLLQLPEWSEDLQEWNREIHLKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCL 928

Query: 11029 KPWDKSKVGSSXXXXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXX 10850
             KPW KSK+ SS            DFCFLTVWGMETELPFGSPRKRPSFFKPIF EF    
Sbjct: 929   KPWHKSKLRSSQKNLMKKKKKKDDFCFLTVWGMETELPFGSPRKRPSFFKPIFKEFKKKI 988

Query: 10849 XXXXXKYFRVLIIFKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREV 10670
                  KYFRV  +FK KTKLL+KVSKETKKWVIKSV+  K+IIKELSK+NPILLF+LREV
Sbjct: 989   GKSKKKYFRVQTVFKGKTKLLQKVSKETKKWVIKSVLFIKRIIKELSKVNPILLFKLREV 1048

Query: 10669 EVYXXXXXXXXXXXXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERI 10490
             EVY             SNQIIH+SFSQ  SP+WT  SLTEKK+KD+TDR STI+NQIERI
Sbjct: 1049  EVYESSEIKEEKDPILSNQIIHKSFSQLASPSWTTSSLTEKKIKDMTDRISTIQNQIERI 1108

Query: 10489 KKEKKKVTPRINNLSPNKTSYNAKRFEKWQ--ILKRRNARIICKLPFFLKFFIERIYTDI 10316
              KEKKKVTPRINNLSPNKTSYNAK+FEK +   ++R NA++ICKLP F KFFIE+IYTDI
Sbjct: 1109  TKEKKKVTPRINNLSPNKTSYNAKKFEKGERGNVQRGNAQLICKLPPFFKFFIEKIYTDI 1168

Query: 10315 FLSLINIPRMNTEFFLESTKKIL-DKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDN 10139
             FLS+INIPR+NTE FLE TK++L +      E K+               I TIKKSL N
Sbjct: 1169  FLSIINIPRINTELFLELTKRLLINPFTIMKENKKKQERINKKKKTPIPFILTIKKSLGN 1228

Query: 10138 ISNSKTNSHTFYDLSYVSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFET 9959
             ISN K NSH FYDLSYVSQAYVFYKLSQIQVSNS  LRSV++Y+ IPFFLKP+IKDSFET
Sbjct: 1229  ISNIKANSHIFYDLSYVSQAYVFYKLSQIQVSNS--LRSVVQYRGIPFFLKPKIKDSFET 1286

Query: 9958  QGMVRSKLGDKKLPNYEMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKEN 9779
             QGM   KL DKKLP+YE+N WKNWLRG  QY   QI+WSR +PEKWRN VH R IAKKEN
Sbjct: 1287  QGMFHLKLADKKLPSYEINHWKNWLRGQCQYHFLQIKWSRLIPEKWRNTVHPRRIAKKEN 1346

Query: 9778  LSKWHSYEKDQLIDSKKQFEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPF 9599
             LSKWHS EKDQLIDSKKQFEV  LSNQ++NF KYYRYDLLSYK INYE + ECFFYRSP 
Sbjct: 1347  LSKWHSDEKDQLIDSKKQFEVYSLSNQQDNFLKYYRYDLLSYKLINYENQMECFFYRSPL 1406

Query: 9598  QGNKNQEISYNTPKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKV 9419
             +GNKNQEISYNTPKET F M R+IPI N L  V ILYM+  ADRKYFDWKI NF LRQK 
Sbjct: 1407  RGNKNQEISYNTPKETLFDMPRNIPIKNDLGKVHILYMKNPADRKYFDWKIFNFYLRQKA 1466

Query: 9418  DIEAWIMIDTNRNQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLK 9239
             DIEAWI+IDTNRNQNT+IR NNSQ  SKKDLFYL IPEINLPNSHKGFFDW+GMNEKMLK
Sbjct: 1467  DIEAWIIIDTNRNQNTQIRINNSQIISKKDLFYLMIPEINLPNSHKGFFDWMGMNEKMLK 1526

Query: 9238  RPISNLEHWFFPEFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFL 9059
              PISNLE WFFPEFVLLY  YK KPWFIP                          +GSFL
Sbjct: 1527  HPISNLELWFFPEFVLLYKTYKMKPWFIP--SKLLLFNLNRSQNLNRSQNKKINERGSFL 1584

Query: 9058  IASNKKHRNQEEKEPTSRGDLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFF 8879
             +ASNKKHRNQEE+EPTSR D  S+LSQQKDI+E+ ARS               EAELDFF
Sbjct: 1585  VASNKKHRNQEEREPTSRIDRRSLLSQQKDIDENYARSDMKRGKKKKQYKSNAEAELDFF 1644

Query: 8878  LKRYLLFQLRWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLT 8699
             LK Y LFQLRWD+TLNQRMINNIKVYCLLLRL+DPRKITISS++KREMSLDIMLIQKNLT
Sbjct: 1645  LKCYFLFQLRWDETLNQRMINNIKVYCLLLRLIDPRKITISSIEKREMSLDIMLIQKNLT 1704

Query: 8698  LTELMKKGVLIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDE 8519
             L+ELMKKGVLI+EPIRL GKK+GQFIMYQTIGISLVHKSKHQTNQK QEQRYVSKNNLDE
Sbjct: 1705  LSELMKKGVLILEPIRLSGKKNGQFIMYQTIGISLVHKSKHQTNQKCQEQRYVSKNNLDE 1764

Query: 8518  AISPYQRLTGNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNV 8339
              I P QR+T N +KN FDLLVPENILSFR RRK RILICFNSKN+N  D+N +F N K+V
Sbjct: 1765  TILPQQRITQNSDKNHFDLLVPENILSFRRRRKLRILICFNSKNQNYRDQNPLFWNGKSV 1824

Query: 8338  KNSSKVSHDNNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLY 8159
             KNSS+VSHDNNHLDRE+NQLMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRI +Y
Sbjct: 1825  KNSSQVSHDNNHLDREKNQLMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIQMY 1884

Query: 8158  PRLKICG 8138
             PRL+I G
Sbjct: 1885  PRLQIRG 1891


>ref|YP_009183651.1| hypothetical chloroplast RF19 (chloroplast) [Scutellaria insignis]
             gi|949600210|gb|ALN11661.1| hypothetical chloroplast RF19
             (chloroplast) [Scutellaria insignis]
          Length = 1842

 Score = 2504 bits (6490), Expect = 0.0
 Identities = 1321/1840 (71%), Positives = 1439/1840 (78%), Gaps = 4/1840 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   RVMEEGTEK+VSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRARVMEEGTEKRVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FD GSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDSGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQN SIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNRSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV EL NS ARIFSILLF+TCVYYLGRIPSP+F                          A
Sbjct: 210   LVSELINSTARIFSILLFVTCVYYLGRIPSPLFTKKKKETSKTEERVEIET--------A 261

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 12749
             S+MK TK+E EG             E+ADPNKIDETEEIRVNGKE+EFHF  TETGY+ R
Sbjct: 262   SKMKATKEEHEGYTEEDLSISFFSEERADPNKIDETEEIRVNGKENEFHF--TETGYQNR 319

Query: 12748 PVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYIKN 12569
             PVSEESYLMN NEN DNSRFKIFDKKT+N +     FEKPLV +LFDSKRWNRPFRYIKN
Sbjct: 320   PVSEESYLMNTNENQDNSRFKIFDKKTKNKD--FVFFEKPLVTILFDSKRWNRPFRYIKN 377

Query: 12568 THIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNELY 12389
              + D AV+ EMSQYFF+ICQSDGKERI FTYPPSLSIF E IKRRISL   E ++ NE Y
Sbjct: 378   NNFDKAVRTEMSQYFFDICQSDGKERICFTYPPSLSIFLETIKRRISL---ENYSFNEPY 434

Query: 12388 NPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPFLN 12209
             +PWV+TNKQKGKSFNNEF+NRI+ALDKE   LNI ETRTRL N D  K+YLSKRYDPFLN
Sbjct: 435   SPWVYTNKQKGKSFNNEFINRIKALDKEDTYLNIFETRTRLCNADSTKEYLSKRYDPFLN 494

Query: 12208 RSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSIST 12029
              SYRK IYK  S   L K LIENF+  FGINRIHGIL+ D  YQ+FEQK+NRFDKK +ST
Sbjct: 495   GSYRKTIYKKPS---LSKFLIENFLNPFGINRIHGILIGDAAYQEFEQKRNRFDKKPLST 551

Query: 12028 EIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYLLT--KIVTDANGQX 11855
             EIV F TFISK VRES S+N N KG SLFSEGRID ++ TK+L YLL   KIVTDANGQ 
Sbjct: 552   EIVSFFTFISKFVRESGSSNLNPKGPSLFSEGRIDSDKGTKFLNYLLNLNKIVTDANGQK 611

Query: 11854 XXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIFXXXXXX 11675
                          K+PR SYKLITDLEQQS +YQEDVP++H+IRSRK KRVVI       
Sbjct: 612   MSRKSIRIKEISKKIPRRSYKLITDLEQQSRDYQEDVPLEHQIRSRKGKRVVILTGNKEN 671

Query: 11674 XXXXXXXXXXXXXXE-IALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHSPLFL 11498
                             +ALIRYSQQSDFRRG+IKGSMR+QRRK V+ ELFQANVHSPLF 
Sbjct: 672   TDPNTTDTNMPDQINEVALIRYSQQSDFRRGIIKGSMRAQRRKVVVFELFQANVHSPLFG 731

Query: 11497 DKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKARIEI 11318
             +++QKS LFSFDIS FI +   NW+ +GE  KIVE T+ QT             K RI+I
Sbjct: 732   ERLQKSPLFSFDISRFINQILINWVGKGEALKIVECTKEQTKREEKKEKNKRKEKERIKI 791

Query: 11317 AEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQEWNRE 11138
             AEAWD+IP AQVIRGCMLLTQ I RKYILLPS IIAKNIGRI L QLPEWSED QEWNRE
Sbjct: 792   AEAWDSIPFAQVIRGCMLLTQSIFRKYILLPSFIIAKNIGRIFLLQLPEWSEDLQEWNRE 851

Query: 11137 MYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXXXXXD 10958
             +++KCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPW KSK+ SS            D
Sbjct: 852   IHLKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWHKSKLRSSQKDLMKNKKEKDD 911

Query: 10957 FCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKLLRKV 10778
             FCFLTVWGMETELPF SPR R SFFKPI  EF         KY RVL +FK K KLLRKV
Sbjct: 912   FCFLTVWGMETELPFCSPRNRLSFFKPILKEFEKKMGNCKKKYLRVLTVFKGKLKLLRKV 971

Query: 10777 SKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQIIHES 10598
             SKETKKWVIKS+I  KKI+K+LSK+NPIL FRLREV VY             SNQIIHES
Sbjct: 972   SKETKKWVIKSIIFIKKILKKLSKVNPILFFRLREVGVYASTEIKEEKDSIRSNQIIHES 1031

Query: 10597 FSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNKTSYNAK 10418
             FSQ  SP+WTN+SLTEKKMKDLTDRTSTI NQIERI KEKKKVTPRINNLSP  TSYNAK
Sbjct: 1032  FSQITSPSWTNYSLTEKKMKDLTDRTSTIRNQIERITKEKKKVTPRINNLSP--TSYNAK 1089

Query: 10417 RFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTKKILDKS 10238
             RFEK QILK RNAR+I KL    K FIE+IYT +FLS+INIPR+NTE FL+ TKKI+DKS
Sbjct: 1090  RFEKRQILKIRNARLIYKLLPLFKIFIEKIYTALFLSIINIPRINTELFLKLTKKIIDKS 1149

Query: 10237 IYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAYVFYKLS 10058
             IYNNERK++              ISTIKK LDNISN K NSH FYDLSY+ QAYVFYKLS
Sbjct: 1150  IYNNERKEE--KINKKKKPPIPFISTIKKPLDNISNIKRNSHIFYDLSYMPQAYVFYKLS 1207

Query: 10057 QIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQWKNWLRG 9878
             QIQVSNS  LR V++YQ IP FLKP+IKDS ET+GM  SKL DKK+P+YEMN WK WLRG
Sbjct: 1208  QIQVSNS--LRPVVQYQGIPPFLKPKIKDSCETRGMFHSKLSDKKIPSYEMNPWKTWLRG 1265

Query: 9877  HYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSKKQFEVDLLSNQ 9698
             HYQY LSQIRWSR +PEKWRN V++R IAKKENLSK HS EKD L++ KKQFEV  LSNQ
Sbjct: 1266  HYQYHLSQIRWSRLIPEKWRNTVYQRRIAKKENLSKRHSSEKDSLMNYKKQFEVYSLSNQ 1325

Query: 9697  KENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFSMLRSIPIN 9518
             K+NF KYYRYDLLSYKF+NYE K ECFF RSP  GNKN+EISYNT KET F MLR+IPI 
Sbjct: 1326  KDNFLKYYRYDLLSYKFLNYENKAECFFSRSPLHGNKNKEISYNTSKETLFDMLRNIPIK 1385

Query: 9517  NYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIRTNNSQKNS 9338
             N L  VDI+YMEK +D KYFD KI  F +RQK+ IEA I+IDTNRNQNT+IRTNNSQ  S
Sbjct: 1386  NDLGKVDIIYMEKPSDIKYFDRKIFYFFIRQKIGIEASIIIDTNRNQNTQIRTNNSQIIS 1445

Query: 9337  KKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYNAYKTKPWF 9158
             KKDLFYL IPEINL NSHKGFFDW+GMNEKMLKRP SNLE WFFPEFVLLY  YK KPWF
Sbjct: 1446  KKDLFYLMIPEINLANSHKGFFDWMGMNEKMLKRPRSNLELWFFPEFVLLYKTYKLKPWF 1505

Query: 9157  IPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRGDLGSVLSQ 8978
             IP                          KGSFLIASNKK+RN+EEKE TS+ D  SVLS+
Sbjct: 1506  IP---SKLLLLNLDISETKETKKINEKEKGSFLIASNKKYRNKEEKELTSQVDRRSVLSE 1562

Query: 8977  QKDIEESNA-RSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRMINNIKVY 8801
             QKDIE + A RS              TEAELDFFLKR+LLFQLRWD+TL QR+INNIKVY
Sbjct: 1563  QKDIEANYATRSDMKKGKKKKQYKSNTEAELDFFLKRFLLFQLRWDETLTQRLINNIKVY 1622

Query: 8800  CLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFGKKDGQFI 8621
             CLLLRL+DPRKITISS+QKREM+LDIMLIQKNLTL+ELMKKGVLI+EPIRL GKKDGQFI
Sbjct: 1623  CLLLRLIDPRKITISSIQKREMNLDIMLIQKNLTLSELMKKGVLILEPIRLSGKKDGQFI 1682

Query: 8620  MYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDLLVPENIL 8441
             MYQTIGISLVHKSKHQTNQKYQEQ YV+ NN DE ISP+Q++TGNRNKN FDLLVPENIL
Sbjct: 1683  MYQTIGISLVHKSKHQTNQKYQEQGYVANNNFDETISPHQKITGNRNKNHFDLLVPENIL 1742

Query: 8440  SFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQLMKFKLF 8261
             +FRH RK RILICFNSKN N IDR+ VF N KNVKNSS+VS DNNHLDRE+NQLMK KLF
Sbjct: 1743  AFRHCRKLRILICFNSKNLNYIDRDPVFWNGKNVKNSSQVSQDNNHLDREKNQLMKLKLF 1802

Query: 8260  LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC 8141
             LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC
Sbjct: 1803  LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKIC 1842


>ref|YP_004563839.1| Ycf1 protein [Olea europaea subsp. cuspidata]
             gi|334085008|emb|CBJ04356.1| Ycf1 protein [Olea europaea
             subsp. cuspidata]
          Length = 1876

 Score = 2479 bits (6425), Expect = 0.0
 Identities = 1308/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+  KY KY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGRKYFKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGPIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFPFCLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPFCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  KFFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFKFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I+P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESITPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_004376479.1| Ycf1 protein [Olea europaea subsp. europaea]
             gi|328795491|emb|CBR30373.1| Ycf1 protein [Olea europaea
             subsp. europaea]
          Length = 1876

 Score = 2479 bits (6425), Expect = 0.0
 Identities = 1308/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGTKYLKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGSIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFP CLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPLCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  +FFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFQFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESIPPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_004564555.1| Ycf1 protein [Olea europaea subsp. maroccana]
             gi|334084922|emb|CBS29308.1| Ycf1 protein [Olea europaea
             subsp. maroccana]
          Length = 1876

 Score = 2478 bits (6422), Expect = 0.0
 Identities = 1307/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGTKYLKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGSIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFP CLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPLCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  +FFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFQFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQ+IS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQDISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESIPPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_003359417.2| Ycf1 (chloroplast) [Olea europaea] gi|291059312|gb|ADD72148.1| YCF1
             protein (chloroplast) [Olea europaea]
             gi|334084545|emb|CBR24683.1| Ycf1 protein [Olea europaea
             subsp. europaea] gi|363413092|gb|ADA69984.2| Ycf1
             (chloroplast) [Olea europaea] gi|510934462|emb|CCQ09160.1|
             Ycf1 protein (chloroplast) [Olea europaea subsp. europaea]
          Length = 1876

 Score = 2477 bits (6421), Expect = 0.0
 Identities = 1307/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGTKYLKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGSIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFP CLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPLCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  +FFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFQFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KE+FF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKESFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESIPPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_004564062.1| Ycf1 protein [Olea woodiana subsp. woodiana]
             gi|334084717|emb|CBS29411.1| Ycf1 protein [Olea woodiana
             subsp. woodiana]
          Length = 1876

 Score = 2477 bits (6419), Expect = 0.0
 Identities = 1310/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEF+FR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFNFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFYFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F+EMIKRRISL TLEKF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFWEMIKRRISLATLEKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+   +YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTNEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKYL   IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-FNSRGLSVFSDKEEGRIDSEKGTKYLKYLKNTIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGTKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK  FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGPIKPIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFPFCLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPFCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR REVEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFFKKIRKELLKVNPILLFRSREVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  KFFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFKFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNKNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG++ SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIIHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N  KW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFRKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKY +YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYSKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDIEAWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIEAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNYQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLKRYLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKRYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESIPPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN FDLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHFDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDRETNQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>emb|CBR23797.1| Ycf1 protein (chloroplast) [Olea europaea subsp. cuspidata]
          Length = 1876

 Score = 2472 bits (6408), Expect = 0.0
 Identities = 1306/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IK+   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKDNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L DTDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPDTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGTKYLKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGPIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFPFCLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPFCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  KFFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFKFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++ RN  ++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQCRNSDYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWK++NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKMINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I+P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESITPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>emb|CBR23889.1| Ycf1 protein (chloroplast) [Olea europaea subsp. cuspidata]
          Length = 1876

 Score = 2472 bits (6408), Expect = 0.0
 Identities = 1307/1856 (70%), Positives = 1438/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
              EMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFR TETG 
Sbjct: 270   YEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRLTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKPLV LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPLVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IK+   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F EMIKRRISLPTL+KF+SN
Sbjct: 390   IKDNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFLEMIKRRISLPTLQKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+  K+YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTKEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NFIEK GINRIHGI+L  TDYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFIEKVGINRIHGIILPYTDYQKIEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKY   +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-LNSRGLSVFSDKEEGRIDSEKGTKYLKYFQNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+ALIRYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   ---TGNKEHTEDTNPPDQTDEVALIRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 745

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK+ FRNW+ RG  FKIVEYTE QT              
Sbjct: 746   SPLFLDRIKKSLLFSFDISGPIKKIFRNWVGRGSAFKIVEYTEEQTKREEKKEKDKKEEN 805

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ + RKYILLPS IIAKNIGR+LL QLPEW
Sbjct: 806   KRKENARIEIAEAWDTIPFAQVIRGSMLITQSLFRKYILLPSLIIAKNIGRMLLLQLPEW 865

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFPFCLKPW +SK+  S   
Sbjct: 866   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPFCLKPWHRSKLRFSHKD 925

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFGSPRKRPSFF+PIF E          KYF +L I
Sbjct: 926   LIMKKKKEKDDFCFLTVLGMETELPFGSPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 985

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKVSKETKKWVIKSV+  KKI KEL K+NPILLFR R+VEVY          
Sbjct: 986   FKGKIKLLRKVSKETKKWVIKSVVFLKKIRKELLKVNPILLFRSRKVEVYESSETKKERD 1045

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IH+SFSQ  SP+WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1046  PIISNQMIHKSFSQIASPDWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1104

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  KFFIERIYT+IFLS+INIPRM  + F
Sbjct: 1105  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFKFFIERIYTNIFLSIINIPRMKRKLF 1164

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1165  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1222

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1223  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLKDNRLPSS 1282

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++ RN V++R + K++N SKW+ YEKDQLIDSK
Sbjct: 1283  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQCRNRVYQRRMVKRKNFSKWNLYEKDQLIDSK 1342

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1343  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1402

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              KETFF MLRSIPINNYL   DILYMEK  DRKY DWKI+NFDLRQKVDI AWI ID N 
Sbjct: 1403  YKETFFDMLRSIPINNYLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIGAWITIDANS 1462

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   +K++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1463  NQNTQIVTNNDQIIDQKNIFYLMIPEMNLPNSPKVFFDWMGMNEKILKRPILNLELWFFP 1522

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K+RNQ
Sbjct: 1523  EFLLLYNTYKTKSWFIPSKLLLLNLNRNENSNENQNQKINEKQKGSFLIPSNKKIKNRNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLK YLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKHYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPRKI+ISS+Q+ EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRKISISSIQRGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
             LIIEPIRL  K DGQFIMYQTIGI LVHKSKHQTNQ+Y+EQRYV+KNN DE+I+P++R+T
Sbjct: 1703  LIIEPIRLSVKNDGQFIMYQTIGILLVHKSKHQTNQRYREQRYVAKNNFDESITPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRND+DRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDVDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDREINQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_009110660.1| Ycf1 protein (chloroplast) [Hesperelaea palmeri]
             gi|725798344|emb|CED79820.1| Ycf1 protein (chloroplast)
             [Hesperelaea palmeri]
          Length = 1876

 Score = 2458 bits (6371), Expect = 0.0
 Identities = 1302/1856 (70%), Positives = 1432/1856 (77%), Gaps = 21/1856 (1%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             IT LALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITALALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV ELRNSMARIFSILLF+TCVYYLGRIPSPI                           A
Sbjct: 210   LVSELRNSMARIFSILLFLTCVYYLGRIPSPILTKKWKETSKMEEKVESEEERDVEIETA 269

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKE---DEFHFRFTETGY 12758
             SEMKGTKQEQE              EK DPNKIDETEEIRVNGKE   DEFHFRFTETG 
Sbjct: 270   SEMKGTKQEQERSAEEDPSPSFFSEEKEDPNKIDETEEIRVNGKEKTQDEFHFRFTETGS 329

Query: 12757 KKRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRY 12578
             K  PV E+SYLMN+NEN+DNS+FKI  KK EN +     FEKP+V LLFDS RWNRPFRY
Sbjct: 330   KNSPVYEDSYLMNINENHDNSKFKILIKKPENKDLFCFWFEKPVVTLLFDSNRWNRPFRY 389

Query: 12577 IKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASN 12398
             IKN   + AV+NEMSQYFF+ CQS GKERISFTYPPSLS F+EMIKRRISLPTLEKF+SN
Sbjct: 390   IKNNRFENAVRNEMSQYFFDTCQSAGKERISFTYPPSLSTFWEMIKRRISLPTLEKFSSN 449

Query: 12397 ELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDP 12218
             ELYN WV+TNK+K  + NNEF+NRI+ALDKES+ LNILETRTRL ND+   +YL K YDP
Sbjct: 450   ELYNHWVYTNKEKSNNLNNEFVNRIQALDKESLFLNILETRTRLCNDNTTNEYLPKIYDP 509

Query: 12217 FLNRSYRKIIYKNLSPSI--LKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDK 12044
             FLN  YR+ I K++SPSI  +KKT I+NF EK GINRIHGI+L D+DYQK EQK +RFDK
Sbjct: 510   FLNGPYRRTITKSVSPSIIKIKKTSIDNFQEKVGINRIHGIVLPDSDYQKMEQKIDRFDK 569

Query: 12043 KSISTEIVDFLTFISKVVRESRSTNQNWKGLSLFS---EGRIDYERRTKYLKYLLTKIVT 11873
             K +STEIVDFLTFI+++ +ES S   N +GLS+FS   EGRID E+ TKYLKYL  +IVT
Sbjct: 570   KPLSTEIVDFLTFINELGKESGSI-FNSRGLSIFSDEEEGRIDSEKGTKYLKYLKNRIVT 628

Query: 11872 DANGQXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF 11693
             D N Q              KVPRW YKL ++LEQ++GE QE+ P+DHEIRSRKAKRVVIF
Sbjct: 629   DTNVQKISKKSIRIKEISKKVPRWLYKLTSELEQEAGEDQENGPLDHEIRSRKAKRVVIF 688

Query: 11692 XXXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVH 11513
                                 E+AL+RYSQQSDFRRG+IKGS+R+QRRK VI ELFQANVH
Sbjct: 689   -TGNKEHTEDTNPPDQTDTDEVALLRYSQQSDFRRGIIKGSIRAQRRKIVIWELFQANVH 747

Query: 11512 SPLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQT-----XXXXXXXXX 11348
             SPLFLD+I+KS LFSFDISG IK  FRNW+ RG   KIV+YTE QT              
Sbjct: 748   SPLFLDRIKKSLLFSFDISGPIKPIFRNWVGRGSASKIVDYTEEQTKREEKKEKDKKEEN 807

Query: 11347 XXXXKARIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEW 11168
                  ARIEIAEAWDTIP AQVIRG ML+TQ I RKYI+LPS IIAKNIGR+LL QLPEW
Sbjct: 808   KRKESARIEIAEAWDTIPFAQVIRGSMLITQSIFRKYIVLPSLIIAKNIGRMLLLQLPEW 867

Query: 11167 SEDFQEWNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVG-SSXX 10991
              ED +EWNREM+VKCTYNGV LSETEFP+NWLTDGIQIKILFPFCLKPW +SK+  S   
Sbjct: 868   YEDLEEWNREMHVKCTYNGVQLSETEFPQNWLTDGIQIKILFPFCLKPWHRSKLRFSHKD 927

Query: 10990 XXXXXXXXXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLII 10811
                       DFCFLTV GMETELPFG PRKRPSFF+PIF E          KYF +L I
Sbjct: 928   LIMKKKKEKDDFCFLTVLGMETELPFGYPRKRPSFFEPIFKELEKKIGKFQKKYFLLLKI 987

Query: 10810 FKRKTKLLRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXX 10631
             FK K KLLRKV KETKKWVIKSV+  KKI KEL K+NPILLFR REVEVY          
Sbjct: 988   FKGKIKLLRKVLKETKKWVIKSVVFFKKIRKELLKVNPILLFRSREVEVYESSETKKERD 1047

Query: 10630 XXXSNQIIHESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINN 10451
                SNQ+IHESFSQ  SP WTN SLTEKKMKDLTDRT+TI NQIERI KEKKKVTP I N
Sbjct: 1048  PIISNQMIHESFSQIASPGWTNSSLTEKKMKDLTDRTNTIRNQIERITKEKKKVTPEI-N 1106

Query: 10450 LSPNKTSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFF 10271
             +S NKTSYNAKR EKWQILKRRNAR+I KLPF  +FFIERIYT+IFLS+INIPRM  + F
Sbjct: 1107  ISLNKTSYNAKRLEKWQILKRRNARLISKLPFVFQFFIERIYTNIFLSIINIPRMKRKLF 1166

Query: 10270 LESTKKILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSY 10091
             LESTKKI++KSIYNNE  Q+              ISTIKKSL NISNSKTNSH FYDLSY
Sbjct: 1167  LESTKKIMNKSIYNNETSQE--IINKKNQNPIEFISTIKKSLYNISNSKTNSHIFYDLSY 1224

Query: 10090 VSQAYVFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNY 9911
             +SQAYVFYKLSQ QV N YKL+S L+YQ IPFFLKPEIKDSFETQG+V SKL D +LP+ 
Sbjct: 1225  LSQAYVFYKLSQTQVINLYKLKSFLQYQGIPFFLKPEIKDSFETQGIVHSKLRDNRLPSS 1284

Query: 9910  EMNQWKNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK 9731
             EMNQWKNWLRGHYQYDLSQIRWSR +P++WRN V++R + K++N SKW+ YEKDQLID K
Sbjct: 1285  EMNQWKNWLRGHYQYDLSQIRWSRLIPQQWRNRVYQRRMVKRKNFSKWNLYEKDQLIDYK 1344

Query: 9730  KQ--FEVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEIS--YNT 9563
             K+   EV  L NQK+NFQKYY+YDLLSYK IN E K + F  RSPF+GNKNQEIS  YNT
Sbjct: 1345  KENILEVYSLLNQKDNFQKYYKYDLLSYKSINSENKKDSFISRSPFEGNKNQEISYNYNT 1404

Query: 9562  PKETFFSMLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNR 9383
              K+TFF MLRSIPINN L   DILYMEK  DRKY DWKI+NFDLRQKVDIEAWI ID N 
Sbjct: 1405  YKDTFFDMLRSIPINNSLGKGDILYMEKTPDRKYLDWKIINFDLRQKVDIEAWITIDANS 1464

Query: 9382  NQNTEIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFP 9203
             NQNT+I TNN Q   KK++FYL IPE+NLPNS K FFDW+GMNEK+LKRPI NLE WFFP
Sbjct: 1465  NQNTQIVTNNYQIIDKKNIFYLMIPEMNLPNSQKVFFDWMGMNEKILKRPILNLELWFFP 1524

Query: 9202  EFVLLYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNK--KHRNQ 9029
             EF+LLYN YKTK WFIP                          KGSFLI SNK  K++NQ
Sbjct: 1525  EFLLLYNTYKTKSWFIP--SKLLLLNLNRNENSNENQKINEKQKGSFLIPSNKKIKNQNQ 1582

Query: 9028  EEKEPTSRGDLGSVLS-QQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQL 8852
             EEK+ TS+GDLGSVLS QQKDIEE  ARS              TEAELD FLKRYLLFQL
Sbjct: 1583  EEKKTTSQGDLGSVLSNQQKDIEEDYARSDMKKGKKKKQYKSNTEAELDLFLKRYLLFQL 1642

Query: 8851  RWDDTLNQRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGV 8672
             RWDDTLNQRMINNIKVYC LLRL+DPR I+ISS+Q  EMSLDIMLIQKNLTL ELMK+G+
Sbjct: 1643  RWDDTLNQRMINNIKVYCFLLRLIDPRTISISSIQSGEMSLDIMLIQKNLTLPELMKRGI 1702

Query: 8671  LIIEPIRLFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLT 8492
              IIEPIR+  K DGQFIMYQTIGI LVHKSKHQ NQ+Y+EQRYV+KNN DE+I P++R+T
Sbjct: 1703  FIIEPIRVSVKNDGQFIMYQTIGILLVHKSKHQANQRYREQRYVAKNNFDESIPPHERIT 1762

Query: 8491  GNRNKNRFDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHD 8312
              NR+KN  DLLVPENI SFR RRK RILICFNSKNRNDIDRN VF NE   KNSS+V  D
Sbjct: 1763  RNRDKNHLDLLVPENIFSFRRRRKLRILICFNSKNRNDIDRNPVFCNE---KNSSQVLGD 1819

Query: 8311  NNHLDREENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             +NHLDRE NQLMK K FLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI
Sbjct: 1820  SNHLDRETNQLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 1875


>ref|YP_009162320.1| photosystem I assembly protein Ycf1 (chloroplast) [Scutellaria
             baicalensis] gi|827345828|gb|AKJ77129.1| photosystem I
             assembly protein Ycf1 (chloroplast) [Scutellaria
             baicalensis]
          Length = 1845

 Score = 2445 bits (6337), Expect = 0.0
 Identities = 1297/1843 (70%), Positives = 1417/1843 (76%), Gaps = 12/1843 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   RVMEEGTEK+VSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRARVMEEGTEKRVSATTGFITGQLMMFISIYYAPLHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FD GSTTRNSMRNFSI C+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDSGSTTRNSMRNFSIHCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQN SIRSNKYIRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNRSIRSNKYIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV EL NS ARIFSILLF+TCVYYLGRIPSP+F                           
Sbjct: 210   LVSELINSTARIFSILLFVTCVYYLGRIPSPLFTKKGEETSKTEERVETP---------- 259

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 12749
             SE+K TK+EQEG             E+A P KIDETEEIRVNGKE+EF+F FT T Y+ R
Sbjct: 260   SELKATKEEQEGSAEEDPSISFFSEERAYPKKIDETEEIRVNGKENEFNFGFTGTVYQNR 319

Query: 12748 PVSEESYLMNVNENYDNSRFKIFDKKTENNE----PXXXXFEKPLVNLLFDSKRWNRPFR 12581
             PVSEESYLMN NE  DNSRFKI DKKT+N +           KPLV +LFDSKRWNRPFR
Sbjct: 320   PVSEESYLMNTNEKQDNSRFKIVDKKTKNKDFVFFDKPLVTIKPLVTILFDSKRWNRPFR 379

Query: 12580 YIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFAS 12401
             +IKN H + AV+ EMSQYFF+ CQSDGKERISFTYPPSLSIF EMIKRRIS P LEK++ 
Sbjct: 380   FIKNNHFEKAVRTEMSQYFFDTCQSDGKERISFTYPPSLSIFLEMIKRRISPPKLEKYSF 439

Query: 12400 NELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYD 12221
             N+ Y+PWV+TNKQKGKS NNEF+NRI+ALDKE  SLNI ETRTRL N D  K+YLSKRYD
Sbjct: 440   NDPYSPWVYTNKQKGKSLNNEFINRIKALDKEETSLNIFETRTRLCNADSTKEYLSKRYD 499

Query: 12220 PFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKK 12041
             PFLN SYRK IYKN S   L K LIENF++ FGINRIHGIL+ D  YQ+FEQK  RFDKK
Sbjct: 500   PFLNGSYRKTIYKNPS---LSKFLIENFLDPFGINRIHGILIPDAAYQEFEQKITRFDKK 556

Query: 12040 SISTEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYLLTKIVTDANG 11861
              +STEIV F TF+SK VRES STN N KG SLFSEGRID E+ TK   Y L +  TD NG
Sbjct: 557   PLSTEIVYFFTFMSKFVRESGSTNLNPKGPSLFSEGRIDSEKGTKIFNYFLNR--TDPNG 614

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIFXXXX 11681
             Q              K+PR SY+LITDLEQQS +YQEDVP++H+IRSRK KRVVI     
Sbjct: 615   QKISRKSIRIKEISKKIPRRSYQLITDLEQQSRDYQEDVPLEHQIRSRKGKRVVILTANN 674

Query: 11680 XXXXXXXXXXXXXXXXE-IALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHSPL 11504
                               +ALIRYSQQSDFRRG+IKGSMR+QRRK VI ELFQAN +S L
Sbjct: 675   ENTDPNTTDTNLPDQINEVALIRYSQQSDFRRGIIKGSMRAQRRKVVIFELFQANANSLL 734

Query: 11503 FLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKARI 11324
             F++++Q+S LFSFDIS  IK+   NW+ +G+   +VE T+ QT             KARI
Sbjct: 735   FVERLQESPLFSFDISRLIKKILINWVGKGQ---VVECTKEQTKREEKKEKKKRKEKARI 791

Query: 11323 EIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQEWN 11144
             +IAEAWD+IP AQVIRGCMLLTQ I RKYILLPS IIAKNIGRI L QLPEWSED QEWN
Sbjct: 792   KIAEAWDSIPFAQVIRGCMLLTQSIFRKYILLPSFIIAKNIGRIFLLQLPEWSEDLQEWN 851

Query: 11143 REMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXXXX 10964
             RE+++KCTYNGVPLSETEFPKNWLTDGIQIKILFPFC+KPW KSK+ S            
Sbjct: 852   REIHLKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCMKPWHKSKLRSFQKDLMKKTKEK 911

Query: 10963 XDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKLLR 10784
              DFCFLTVWGMETELPF S RKR  FFKPI  EF         KYFRVL +FK KTKLLR
Sbjct: 912   DDFCFLTVWGMETELPFCSSRKRLPFFKPILKEFEKKIGKCKKKYFRVLTVFKGKTKLLR 971

Query: 10783 KVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQIIH 10604
             KVSKETKKWVIKSVI  KKI+K+LSK+NPILLFRLREV VY             SNQIIH
Sbjct: 972   KVSKETKKWVIKSVIFIKKILKKLSKVNPILLFRLREVGVYASSEIKEEKDSIRSNQIIH 1031

Query: 10603 ESFSQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNKTSYN 10424
             ESFSQ  SP+WTN SLTEKKMKDLTDRTSTI NQIERI K+KKKVTPRINNLSP  TSYN
Sbjct: 1032  ESFSQIASPSWTNSSLTEKKMKDLTDRTSTIRNQIERITKDKKKVTPRINNLSP--TSYN 1089

Query: 10423 AKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTKKILD 10244
             AKRFEK +ILKR NA++I KL   LKFFIE+IYT +FLS+INIPR+NTE FL+ TK+I+D
Sbjct: 1090  AKRFEKREILKRTNAQLIYKLLPLLKFFIEKIYTALFLSIINIPRINTELFLKLTKQIID 1149

Query: 10243 KSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAYVFYK 10064
             KSIYNNERKQ+               STIKK LDNISN K NSH FYDLSYV QAYVFYK
Sbjct: 1150  KSIYNNERKQEKINKKNKTPIPFI--STIKKPLDNISNIKINSHFFYDLSYVPQAYVFYK 1207

Query: 10063 LSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQWKNWL 9884
             LSQIQVSNS  LR V++YQ IP FLKP+IKDSFET+GM  SKL DKKLP+YEMN WK WL
Sbjct: 1208  LSQIQVSNS--LRPVVQYQGIPPFLKPKIKDSFETRGMFHSKLADKKLPSYEMNPWKTWL 1265

Query: 9883  RGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSKKQ--FEVDL 9710
             RGHYQY LSQIRWSR +PEKWRN V++R IAKKENLSK HS EKD  ++ KKQ  FEV  
Sbjct: 1266  RGHYQYHLSQIRWSRLIPEKWRNTVYQRRIAKKENLSKRHSSEKDSFMNYKKQKQFEVYS 1325

Query: 9709  LSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFSMLRS 9530
             LSN K+NF KY RYDLLSYKF+NYE K ECFFYRSP  GNKN+ ISYNT KET F MLR+
Sbjct: 1326  LSNPKDNFLKYIRYDLLSYKFLNYENKAECFFYRSPLHGNKNKGISYNTSKETLFDMLRN 1385

Query: 9529  IPINNYLEGVDILYMEKM----ADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             IPI N L  VDILYMEK     ADRKYFD KI  F +RQK+ IEA I+IDTNRNQNT+IR
Sbjct: 1386  IPIKNDLGKVDILYMEKHMEKPADRKYFDRKIFYFFIRQKIGIEASIIIDTNRNQNTQIR 1445

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             TNNSQ  SKKDLFYL IPEINL NSHKGFFDW+GMNEK +KRPISNLE WFFPEFVLLY 
Sbjct: 1446  TNNSQIISKKDLFYLMIPEINLANSHKGFFDWMGMNEKKVKRPISNLELWFFPEFVLLYK 1505

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                           GSFLIASNKK+RNQEEKEPTS+ 
Sbjct: 1506  TYKLKPWFIPSKLLLLNLDISETKETKKINEKEK---GSFLIASNKKYRNQEEKEPTSQV 1562

Query: 9001  DLGSVLSQQKDIEESNA-RSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQR 8825
             D   VLSQQKDIE + A RS              TEAELD FLKRYLLFQLRWD+TLNQR
Sbjct: 1563  DRRYVLSQQKDIEANYATRSDMKKGKNKKQYKSNTEAELDLFLKRYLLFQLRWDETLNQR 1622

Query: 8824  MINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLF 8645
             +INNIK YCLLLRL+DPRKITISS+QKREM+LDIMLIQKNLTL+ELMKKGVLI+EPIRL 
Sbjct: 1623  LINNIKAYCLLLRLIDPRKITISSIQKREMNLDIMLIQKNLTLSELMKKGVLILEPIRLS 1682

Query: 8644  GKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFD 8465
             GKKDGQFIM+QTIGISLVHKSKHQTNQK QEQRY S NN DE ISP+Q++ GNRNKN FD
Sbjct: 1683  GKKDGQFIMHQTIGISLVHKSKHQTNQKSQEQRYASNNNFDETISPHQKIIGNRNKNHFD 1742

Query: 8464  LLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREEN 8285
             LLVPENIL+FRH RK RILICFNSKNRN IDRN VF N KNVKNSS+VS DNNHLDRE+N
Sbjct: 1743  LLVPENILAFRHCRKLRILICFNSKNRNYIDRNPVFWNGKNVKNSSQVSQDNNHLDREKN 1802

Query: 8284  QLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYP 8156
             QLMK KLFLWPN RLEDLACMNRYWFDTNNGSRFSMLRIHLYP
Sbjct: 1803  QLMKLKLFLWPNSRLEDLACMNRYWFDTNNGSRFSMLRIHLYP 1845


>gb|AMQ33800.1| hypothetical chloroplast RF19 (chloroplast) [Stachys sylvatica]
          Length = 1847

 Score = 2417 bits (6264), Expect = 0.0
 Identities = 1273/1846 (68%), Positives = 1419/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIFFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF+ NE
Sbjct: 388   KNKRFDKAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKKRISPPIIEKFSFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALDKE+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDKENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSTLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+FLTFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFLTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKINRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VILELF+AN HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVILELFRANPHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE FKIVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNGLDKGEAFKIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSETEFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSETEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKFKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFS--QSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+  Q  SP+WTN SLTE KMK+L DRTSTI NQIERI KEKKKVTPRINNLSP  
Sbjct: 1045  IHESFNQIQIASPSWTNSSLTENKMKNLADRTSTIRNQIERITKEKKKVTPRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSDIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAKK N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKKANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+    
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKKLD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL FD  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKFDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEF LLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFFLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS---NMKKGKKQKQYTKAELHLFLKRYLLFQLRWDGTLNQRM 1626

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MKKGV I+EPIRL  
Sbjct: 1627  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKKGVFILEPIRLSE 1686

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+ IMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TGNR+KNRFDL
Sbjct: 1687  QKDGKLIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGNRDKNRFDL 1743

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV EN+LSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSHDNNHLDR++NQ
Sbjct: 1744  LVTENLLSFRRRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHDNNHLDRDKNQ 1800

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1801  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1846


>ref|YP_009239241.1| ycf1 (chloroplast) [Pedicularis ishidoyana]
             gi|1011056419|ref|YP_009239250.1| ycf1 (chloroplast)
             [Pedicularis ishidoyana] gi|1001185273|gb|AML80475.1| ycf1
             (chloroplast) [Pedicularis ishidoyana]
             gi|1001185274|gb|AML80476.1| ycf1 (chloroplast)
             [Pedicularis ishidoyana]
          Length = 1817

 Score = 2414 bits (6257), Expect = 0.0
 Identities = 1285/1851 (69%), Positives = 1407/1851 (76%), Gaps = 14/1851 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VME+GTEKKVSA +GFITGQ MMF+SIYY PLHLALGRPHT
Sbjct: 31    GFLTTFSIGPSYLFLLRAQVMEKGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 90

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSM+
Sbjct: 91    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSML 150

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             A+LVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQN+SIRSNKYIRSNKY
Sbjct: 151   AKLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNNSIRSNKYIRSNKY 210

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXKA 12929
             LV EL NSMARIFSILLFITCVYYLGRIPSPIF                          A
Sbjct: 211   LVSELINSMARIFSILLFITCVYYLGRIPSPIFTKKLKETPKTEQRVESEEERDVEIETA 270

Query: 12928 SEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYKKR 12749
             SEMKGTKQEQEG             E+ADPNKIDETEEIRVN KEDE H RF E      
Sbjct: 271   SEMKGTKQEQEGSIEEDLPPSFFSEERADPNKIDETEEIRVNRKEDEVHSRFLE------ 324

Query: 12748 PVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYIKN 12569
                                         N +P     EKPLVNLLFDSKRWNRPFRYIKN
Sbjct: 325   ----------------------------NRDPFFK--EKPLVNLLFDSKRWNRPFRYIKN 354

Query: 12568 THIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNELY 12389
             T   G V+NEMSQYFF+IC+SDGKERISFTYPPSLSIF EMIKRRIS PT EK + N+L 
Sbjct: 355   TDFGGTVRNEMSQYFFDICKSDGKERISFTYPPSLSIFLEMIKRRISPPTFEKSSPNKL- 413

Query: 12388 NPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPFLN 12209
               W++TNKQ  KSFNNEFLNRIEALD E ISLNILETRTRL NDDY K+YLSKRYDPFLN
Sbjct: 414   --WLYTNKQHVKSFNNEFLNRIEALDNEFISLNILETRTRLCNDDYTKEYLSKRYDPFLN 471

Query: 12208 RSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSIST 12029
             +SYRK IYKN S   LK+TLI+NFI KFG+NRIHGILLSDTDYQ F+ + NRFDKK++ST
Sbjct: 472   KSYRKTIYKNFSSPNLKQTLIKNFIHKFGMNRIHGILLSDTDYQAFKPQINRFDKKTLST 531

Query: 12028 EIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYLLTKIVTDANGQXXX 11849
             EIVDFLTF+S+V RES   + N K LSLFSEGRI     TKYLKYLLT+IVTD N Q   
Sbjct: 532   EIVDFLTFMSRVFRES---DVNCKVLSLFSEGRIV----TKYLKYLLTQIVTDVNDQKII 584

Query: 11848 XXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIFXXXXXXXX 11669
                        K  R SY+LIT+LEQQSGEYQEDVPVDHEIRSRK K VVIF        
Sbjct: 585   RKSTRIKEISKKALRRSYQLITELEQQSGEYQEDVPVDHEIRSRKGKNVVIFTVNKEDTD 644

Query: 11668 XXXXXXXXXXXXE--IALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHSPLFLD 11495
                            ++LIRYSQQSDFRRG+IKGS+RSQRRK VI+ELFQANVHSPLF D
Sbjct: 645   PNTDTNTFDQTDTGEVSLIRYSQQSDFRRGIIKGSVRSQRRKIVIIELFQANVHSPLFFD 704

Query: 11494 KIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKARIEIA 11315
             +IQK +L S DISG IK  FRN    GE FKI+EYT+ QT               R+EIA
Sbjct: 705   RIQKKNLSSLDISGLIKLIFRNR--GGEAFKILEYTKKQTKREEKKEKNKRKEDTRVEIA 762

Query: 11314 EAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQEWNREM 11135
             EAWDTIP AQ+IRGCMLLTQ   RKYI LPS IIAKNIGRILLFQLPEWS DF EW+RE+
Sbjct: 763   EAWDTIPLAQIIRGCMLLTQSFFRKYIRLPSFIIAKNIGRILLFQLPEWSADFHEWDREV 822

Query: 11134 YVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXXXXXDF 10955
             +VKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKP    K+GSS             F
Sbjct: 823   HVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKP---RKLGSSQKDLKKKPKDY--F 877

Query: 10954 CFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKLLRKVS 10775
             CFLT+WGMETELPFG PRK+ SFFKPIF EF         KYF VL++FK KTKLL K+S
Sbjct: 878   CFLTIWGMETELPFGPPRKQLSFFKPIFAEFKNKIGKFKKKYFGVLLVFKGKTKLLGKLS 937

Query: 10774 KETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQIIHESF 10595
             KE KKWVIKSV+L K  IKE+SK+NPILLFR +EVE+Y             SNQIIHES 
Sbjct: 938   KEAKKWVIKSVLLIKTKIKEISKVNPILLFRFKEVEIYESREFKEEKDSLISNQIIHESP 997

Query: 10594 SQSGSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSP-NKTSYNAK 10418
              Q  SP+W N S TEKKMKDL DRTSTI NQIE+I KEKKKVTPRINNLS  NKT+YNA 
Sbjct: 998   IQIASPSWRNSSFTEKKMKDLADRTSTILNQIEKISKEKKKVTPRINNLSSANKTNYNAN 1057

Query: 10417 RFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTKKILDKS 10238
             RFEKWQILKRRNARIICK P FLKFFIERIYTDIFLS INIP++N + FLE  KK+ DK 
Sbjct: 1058  RFEKWQILKRRNARIICKFPLFLKFFIERIYTDIFLSSINIPKINKKLFLELIKKMSDKF 1117

Query: 10237 IYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAYVFYKLS 10058
             IYNN RKQ+                 I KSLDNISN KTN H+FY LS +SQAYVFYKLS
Sbjct: 1118  IYNNSRKQEIINKKNKNPIPF-----ISKSLDNISNIKTNPHSFYHLSDISQAYVFYKLS 1172

Query: 10057 QIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQWKNWLRG 9878
             QIQVSNSYKLR VL YQ IPFF KPEIKDSFETQG+V SKLG+KKLP+YEMNQWKNWLRG
Sbjct: 1173  QIQVSNSYKLRYVLHYQGIPFFPKPEIKDSFETQGVVHSKLGNKKLPSYEMNQWKNWLRG 1232

Query: 9877  HYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSKKQFEVDLLSNQ 9698
             HYQY+LSQI+WSR +PEKWRN +H+RHIAKKE +SKW   EKD LIDSKKQFEV  LSNQ
Sbjct: 1233  HYQYNLSQIKWSRLIPEKWRNTLHKRHIAKKEIVSKWD--EKDHLIDSKKQFEVYSLSNQ 1290

Query: 9697  KENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFSMLRSIP-- 9524
             KENFQK YRYDLLSYKFI+YE KTECFFYRSPFQGNKNQEISY T K T   + R+IP  
Sbjct: 1291  KENFQKDYRYDLLSYKFIDYENKTECFFYRSPFQGNKNQEISY-TSKGTLLDISRNIPNY 1349

Query: 9523  INNYLEGVDILYM---------EKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNT 9371
             +N  L  VD LYM         EKMADRKYFDWK +NFDL+QKV+IEA  +I+TN NQN 
Sbjct: 1350  LNYNLGRVDTLYMDMENIYMDMEKMADRKYFDWKSINFDLKQKVNIEACTVINTNSNQNV 1409

Query: 9370  EIRTNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVL 9191
             +I TNNS K   KDL YL+IP+ N PNSHKGFFDW+GMNEK+LK+PI NLE WFFPEFVL
Sbjct: 1410  QIITNNSPK---KDLSYLKIPKKNPPNSHKGFFDWMGMNEKILKQPIPNLESWFFPEFVL 1466

Query: 9190  LYNAYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPT 9011
             LY+AYK KPWFIP                          KGSFLIA+ KK+ NQ EKEP 
Sbjct: 1467  LYSAYKMKPWFIPSKLLLLNLNRNENQNCSKNKKINEKEKGSFLIAAKKKYPNQNEKEPI 1526

Query: 9010  SRGDLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLN 8831
             SRG LGSVLSQ KDIEE+  +S             KT+AELD FLKRYLLFQLRWDDTLN
Sbjct: 1527  SRGGLGSVLSQPKDIEENYVKSDMKKGKKKKQYKNKTKAELDLFLKRYLLFQLRWDDTLN 1586

Query: 8830  QRMINNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIR 8651
             QRMINNIKVYCLLLRLV+PRKITISS+++RE+ LDIMLIQKNLTLTELMK+G+LIIEP R
Sbjct: 1587  QRMINNIKVYCLLLRLVNPRKITISSIRRREICLDIMLIQKNLTLTELMKRGILIIEPAR 1646

Query: 8650  LFGKKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNR 8471
             L GKKDGQFIMYQTIGISL+HKSKHQTNQKYQ+Q Y  + +  EAIS  QR+T NR++N 
Sbjct: 1647  LSGKKDGQFIMYQTIGISLIHKSKHQTNQKYQKQGYDPQTHFGEAISTQQRITENRDQNS 1706

Query: 8470  FDLLVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDRE 8291
             FDLLVPENILSF+ R+K RILICFNSKNRN+IDRN VF NEKN+KNS++VSHDN HLD+E
Sbjct: 1707  FDLLVPENILSFKRRKKLRILICFNSKNRNNIDRNPVFWNEKNLKNSTQVSHDNKHLDKE 1766

Query: 8290  ENQLMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKICG 8138
             +NQLMK KLFLWPNYRLEDLACMNRYWF+TNNGSRFSMLRI +YPRLKICG
Sbjct: 1767  KNQLMKLKLFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIQMYPRLKICG 1817


>gb|AMQ33624.1| hypothetical chloroplast RF19 (chloroplast) [Stachys chamissonis]
          Length = 1847

 Score = 2414 bits (6256), Expect = 0.0
 Identities = 1271/1846 (68%), Positives = 1417/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIIFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF+ NE
Sbjct: 388   KNKRFDKAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKKRISPPIIEKFSFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALD E+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDNENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSNLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+F TFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFFTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKMNRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VI ELF+AN HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVIFELFRANPHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE F+IVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNGLDKGEAFQIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSETEFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSETEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKFKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFSQS--GSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+Q    SP+WTN SLTE KMKDL DRTSTI NQIERI KEKKKVTPRINNLSP  
Sbjct: 1045  IHESFNQMQIASPSWTNSSLTENKMKDLADRTSTIRNQIERITKEKKKVTPRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSEIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAKK N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKKANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+  F 
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKIFD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL  D  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKLDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEFVLLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFVLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS---NMKKGKKQKQYTKAELHLFLKRYLLFQLRWDGTLNQRM 1626

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MK+GV I+EPIRL  
Sbjct: 1627  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKRGVFILEPIRLSE 1686

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+FIMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TG R+KNRFDL
Sbjct: 1687  QKDGKFIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGTRDKNRFDL 1743

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV ENILSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSHDNNHLDR++NQ
Sbjct: 1744  LVTENILSFRLRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHDNNHLDRDKNQ 1800

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1801  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1846


>gb|AMQ32920.1| hypothetical chloroplast RF19 (chloroplast) [Stenogyne haliakalae]
          Length = 1848

 Score = 2414 bits (6256), Expect = 0.0
 Identities = 1271/1846 (68%), Positives = 1417/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIIFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF  NE
Sbjct: 388   KNKRFDKAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKKRISPPIIEKFLFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALD E+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDNENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSNLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+F TFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFFTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKMNRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VI ELF+AN+HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVIFELFRANLHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE F+IVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNGLDKGEAFQIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSETEFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSETEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKFKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFSQS--GSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+Q    SP+WTN SLTE KMKDL DRTSTI NQIERI KEKKKVTPRINNLSP  
Sbjct: 1045  IHESFNQMQIASPSWTNSSLTENKMKDLADRTSTIRNQIERITKEKKKVTPRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSEIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAKK N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKKANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+  F 
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKNFD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL FD  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKFDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEF LLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFFLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS--NMKKEGKKQKQYTKAELHLFLKRYLLFQLRWDGTLNQRM 1627

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MKKGV I+EPIRL  
Sbjct: 1628  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKKGVFILEPIRLSE 1687

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+FIMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TG R+KNRFDL
Sbjct: 1688  QKDGKFIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGTRDKNRFDL 1744

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV EN+LSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSHDNNHLDR++NQ
Sbjct: 1745  LVTENLLSFRLRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHDNNHLDRDKNQ 1801

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1802  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1847


>gb|AMQ33448.1| hypothetical chloroplast RF19 (chloroplast) [Stenogyne kanehoana]
          Length = 1847

 Score = 2412 bits (6252), Expect = 0.0
 Identities = 1271/1846 (68%), Positives = 1416/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIIFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF  NE
Sbjct: 388   KNKRFDKAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFXEMIKKRISPPIIEKFLFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALD E+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDNENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSNLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+F TFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFFTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKMNRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VI ELF+AN HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVIFELFRANPHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE F+IVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNGLDKGEAFQIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSETEFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSETEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKLKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFSQS--GSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+Q    SP+WTN SLTE KMKDL DRTSTI NQIERI KEKKKVTPRINNLSP  
Sbjct: 1045  IHESFNQMQIASPSWTNSSLTENKMKDLADRTSTIRNQIERITKEKKKVTPRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSEIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAKK N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKKANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+  F 
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKNFD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL FD  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKFDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEF LLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFFLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS---NMKKGKKQKQYTKAELHLFLKRYLLFQLRWDGTLNQRM 1626

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MKKGV I+EPIRL  
Sbjct: 1627  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKKGVFILEPIRLSE 1686

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+FIMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TG R+KNRFDL
Sbjct: 1687  QKDGKFIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGTRDKNRFDL 1743

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV EN+LSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSHDNNHLDR++NQ
Sbjct: 1744  LVTENLLSFRLRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHDNNHLDRDKNQ 1800

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1801  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1846


>gb|AMQ33096.1| hypothetical chloroplast RF19 (chloroplast) [Stenogyne bifida]
          Length = 1847

 Score = 2408 bits (6241), Expect = 0.0
 Identities = 1269/1846 (68%), Positives = 1415/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIIFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF  NE
Sbjct: 388   KNKRFDKAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKKRISPPIIEKFLFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALD E+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDNENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSNLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+F TFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFFTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKMNRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VI ELF+AN HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVIFELFRANPHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE F+IVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNGLDKGEAFQIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSE+EFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSESEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKLKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFSQS--GSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+Q    SP+WTN SLTE KMKDL DRTSTI NQIERI KEKKKVT RINNLSP  
Sbjct: 1045  IHESFNQMQIASPSWTNSSLTENKMKDLADRTSTIRNQIERITKEKKKVTSRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSEIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAKK N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKKANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+  F 
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKNFD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL FD  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKFDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEF LLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFFLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS---NMKKGKKQKQYTKAELHLFLKRYLLFQLRWDGTLNQRM 1626

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MKKGV I+EPIRL  
Sbjct: 1627  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKKGVFILEPIRLSE 1686

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+FIMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TG R+KNRFDL
Sbjct: 1687  QKDGKFIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGTRDKNRFDL 1743

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV EN+LSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSHDNNHLDR++NQ
Sbjct: 1744  LVTENLLSFRLRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHDNNHLDRDKNQ 1800

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1801  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1846


>gb|AMQ33184.1| hypothetical chloroplast RF19 (chloroplast) [Haplostachys haplostachya]
          Length = 1847

 Score = 2406 bits (6236), Expect = 0.0
 Identities = 1268/1846 (68%), Positives = 1414/1846 (76%), Gaps = 11/1846 (0%)
 Frame = -1

Query: 13648 GFLTTLFVGSSYVFLRLVRVMEEGTEKKVSAISGFITGQFMMFVSIYYVPLHLALGRPHT 13469
             GFLTT  +G SY+FL   +VMEEGTEKKVSA +GFITGQ MMF+SIYY P+HLALGRPHT
Sbjct: 30    GFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPMHLALGRPHT 89

Query: 13468 ITVLALPYLLXXXXXXXXXXXFDYGSTTRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMV 13289
             ITVLALPYLL           FDYGSTTRNSMRNFSIQC+FLNNLIFQLFNHFILPSSM+
Sbjct: 90    ITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNFSIQCLFLNNLIFQLFNHFILPSSML 149

Query: 13288 ARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWLGLVLVWIRQNHSIRSNKYIRSNKY 13109
             ARLVNIYMFRCNNKMLFVTSSFVGWLIGHI FMKWLGLVLVWIRQNHSIRSN  IRSNKY
Sbjct: 150   ARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNVLIRSNKY 209

Query: 13108 LVLELRNSMARIFSILLFITCVYYLGRIPSPIFXXXXXXXXXXXXXXXXXXXXXXXXXK- 12932
             LV EL NS ARI SILLFITCVYYLGRIPSP+F                           
Sbjct: 210   LVSELTNSTARILSILLFITCVYYLGRIPSPLFTKKLKETSKTGAGERVESEEERDVEIE 269

Query: 12931 -ASEMKGTKQEQEGXXXXXXXXXXXXXEKADPNKIDETEEIRVNGKEDEFHFRFTETGYK 12755
              ASEMKGTKQEQEG             E ADPNKIDETEEI+VNGKE EFHFRFTETGY+
Sbjct: 270   TASEMKGTKQEQEGSTEEDPSLYFFSEEGADPNKIDETEEIQVNGKEKEFHFRFTETGYQ 329

Query: 12754 KRPVSEESYLMNVNENYDNSRFKIFDKKTENNEPXXXXFEKPLVNLLFDSKRWNRPFRYI 12575
               PVSEESYLMN N+N DNSR +IFD+KTEN E     F+KPL+ +LFDS RWNRPFRY 
Sbjct: 330   NGPVSEESYLMNFNDNQDNSRLQIFDQKTENKE--LIIFDKPLITILFDSNRWNRPFRYR 387

Query: 12574 KNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEMIKRRISLPTLEKFASNE 12395
             KN   D  V+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EMIK+RIS P +EKF  NE
Sbjct: 388   KNKRFDKTVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEMIKKRISPPIIEKFLFNE 447

Query: 12394 LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRLYNDDYPKKYLSKRYDPF 12215
             LYNPWV+TNKQK K+ NNEFLNRI+ALD E+I LNILETRTRL NDD  K+YLSK+YDP 
Sbjct: 448   LYNPWVYTNKQKEKNLNNEFLNRIKALDNENIYLNILETRTRLCNDDSTKEYLSKKYDPL 507

Query: 12214 LNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGILLSDTDYQKFEQKKNRFDKKSI 12035
             LN SYRK IYK+ SPS LKKTLIEN ++ FGINRIHGILL DTDYQ+FEQK NRF++KS+
Sbjct: 508   LNGSYRKTIYKSPSPSNLKKTLIENLLDPFGINRIHGILLPDTDYQEFEQKINRFEQKSL 567

Query: 12034 STEIVDFLTFISKVVRESRSTNQNWKGLSLFSEGRIDYERRTKYLKYL--LTKIVTDANG 11861
             STEIV+F TFISK V++S STN N   LSLFSEG+ID+++ TKY  YL  L KIVTDANG
Sbjct: 568   STEIVNFFTFISKFVKKSGSTNLNPSSLSLFSEGKIDFQKETKYFNYLLNLNKIVTDANG 627

Query: 11860 QXXXXXXXXXXXXXXKVPRWSYKLITDLEQQSGEYQEDVPVDHEIRSRKAKRVVIF---X 11690
             Q              K+PRWSYKLITDLEQQS EY+ED+P+DH+IRSR+ KRVVIF    
Sbjct: 628   QKMNRKSIRIKEIKKKLPRWSYKLITDLEQQSREYKEDIPIDHQIRSRRGKRVVIFTATK 687

Query: 11689 XXXXXXXXXXXXXXXXXXXEIALIRYSQQSDFRRGLIKGSMRSQRRKTVILELFQANVHS 11510
                                E+AL+RY QQ+DFR G+IKGSMR+QRRK VI ELF+AN HS
Sbjct: 688   QTTDPNTTNTKMSDKSQRKEVALMRYLQQADFRHGIIKGSMRAQRRKLVIFELFRANPHS 747

Query: 11509 PLFLDKIQKSSLFSFDISGFIKRNFRNWMWRGEGFKIVEYTENQTXXXXXXXXXXXXXKA 11330
             PLFL+++QKS    FDISG  K  F+N + +GE F+IVEYT+ QT             KA
Sbjct: 748   PLFLERLQKS---PFDISGLRKLIFKNRLDKGEAFQIVEYTKEQTKRKEKKEQNKSKEKA 804

Query: 11329 RIEIAEAWDTIPCAQVIRGCMLLTQCILRKYILLPSCIIAKNIGRILLFQLPEWSEDFQE 11150
             RI++AEAW  IP AQ IRGC+LLTQ I R+YILLPS IIAKN+GRI L QLPEWSEDFQE
Sbjct: 805   RIKVAEAWKRIPFAQGIRGCVLLTQSIFRRYILLPSLIIAKNLGRIFLLQLPEWSEDFQE 864

Query: 11149 WNREMYVKCTYNGVPLSETEFPKNWLTDGIQIKILFPFCLKPWDKSKVGSSXXXXXXXXX 10970
             WN+E+++KCTYNG PLSETEFPKNWLTDGIQIKILFPFCLKP  KSK+ S          
Sbjct: 865   WNKEIHIKCTYNGSPLSETEFPKNWLTDGIQIKILFPFCLKPSQKSKLRSFQKDLMKKKK 924

Query: 10969 XXXDFCFLTVWGMETELPFGSPRKRPSFFKPIFNEFXXXXXXXXXKYFRVLIIFKRKTKL 10790
                DFCFLTVWGMETELPF SPRK+PSFFKPI  EF         KYFRVL +FK KTKL
Sbjct: 925   QKGDFCFLTVWGMETELPFCSPRKKPSFFKPILKEFEKKIGKLKKKYFRVLTVFKGKTKL 984

Query: 10789 LRKVSKETKKWVIKSVILTKKIIKELSKINPILLFRLREVEVYXXXXXXXXXXXXXSNQI 10610
             LRKVSKETKKWV+KSV   K+IIKELS +NPILLFRLREV VY             +NQI
Sbjct: 985   LRKVSKETKKWVLKSVFFRKRIIKELSNVNPILLFRLREVGVYESSKIKEEKDSIINNQI 1044

Query: 10609 IHESFSQS--GSPNWTNFSLTEKKMKDLTDRTSTIENQIERIKKEKKKVTPRINNLSPNK 10436
             IHESF+Q    SP+WTN SLTE KMKDL DRTSTI NQIERI KEKKKVTPRINNLSP  
Sbjct: 1045  IHESFNQMQIASPSWTNSSLTENKMKDLADRTSTIRNQIERITKEKKKVTPRINNLSP-- 1102

Query: 10435 TSYNAKRFEKWQILKRRNARIICKLPFFLKFFIERIYTDIFLSLINIPRMNTEFFLESTK 10256
             TS NAK+FE  ++LKR NA++ICKL  FLKFFIE+IYTDIFLS+INIPR+NTE  L+ TK
Sbjct: 1103  TSSNAKKFENQEMLKRINAQLICKLSPFLKFFIEKIYTDIFLSIINIPRINTELLLKLTK 1162

Query: 10255 KILDKSIYNNERKQDXXXXXXXXXXXXXXISTIKKSLDNISNSKTNSHTFYDLSYVSQAY 10076
             KI+DKSIYNNERKQ+              IS+IKK LDNISN K  S  FYDLSYV QAY
Sbjct: 1163  KIIDKSIYNNERKQE--RINKKKKTPIPFISSIKKPLDNISNIKATSEIFYDLSYVPQAY 1220

Query: 10075 VFYKLSQIQVSNSYKLRSVLKYQEIPFFLKPEIKDSFETQGMVRSKLGDKKLPNYEMNQW 9896
             VFYKL++IQV+NS  LRSV++YQ IPFFLKP+IKDSFETQGM+ SK  D KLP+YEMN W
Sbjct: 1221  VFYKLAKIQVTNS--LRSVVQYQGIPFFLKPKIKDSFETQGMLDSKSADNKLPSYEMNPW 1278

Query: 9895  KNWLRGHYQYDLSQIRWSRFLPEKWRNIVHRRHIAKKENLSKWHSYEKDQLIDSK--KQF 9722
             K+WLRGH QY LSQI WS+ +PEKWRNI  +  IAK  N SK HSYEK+ L++SK  KQF
Sbjct: 1279  KSWLRGHSQYHLSQIGWSKLIPEKWRNIFRQHRIAKXANFSKRHSYEKNPLMNSKKQKQF 1338

Query: 9721  EVDLLSNQKENFQKYYRYDLLSYKFINYETKTECFFYRSPFQGNKNQEISYNTPKETFFS 9542
             EV  L NQK+NF KYYRYDLLSYKF++YE KTECFFY S FQGN N EI Y  PK+  F 
Sbjct: 1339  EVYSLFNQKDNFLKYYRYDLLSYKFLHYERKTECFFYGSSFQGNTNHEIYYTIPKKKNFD 1398

Query: 9541  MLRSIPINNYLEGVDILYMEKMADRKYFDWKILNFDLRQKVDIEAWIMIDTNRNQNTEIR 9362
             MLR+IPI N L  +   + EK  +RKYFDW+IL FD  QKVDIEAWI IDTNRNQNT+IR
Sbjct: 1399  MLRNIPIKNDLGKI---HTEKPVNRKYFDWEILKFDFIQKVDIEAWIRIDTNRNQNTQIR 1455

Query: 9361  TNNSQKNSKKDLFYLRIPEINLPNSHKGFFDWIGMNEKMLKRPISNLEHWFFPEFVLLYN 9182
             T NSQ + KKD F L+IPEINLPNSHKGF DW+GMNEKMLK PISNLE WFFPEF LLY 
Sbjct: 1456  TKNSQISYKKDFFDLKIPEINLPNSHKGFCDWMGMNEKMLKHPISNLELWFFPEFFLLYK 1515

Query: 9181  AYKTKPWFIPXXXXXXXXXXXXXXXXXXXXXXXXXXKGSFLIASNKKHRNQEEKEPTSRG 9002
              YK KPWFIP                          KG+FLIASNKKHRNQE+KEPTS G
Sbjct: 1516  TYKMKPWFIP------SKLLLLNLNRSENKKINEKEKGAFLIASNKKHRNQEDKEPTSPG 1569

Query: 9001  DLGSVLSQQKDIEESNARSXXXXXXXXXXXXXKTEAELDFFLKRYLLFQLRWDDTLNQRM 8822
             +  SVLSQQKDIEE+ ARS              T+AEL  FLKRYLLFQLRWD+TLNQRM
Sbjct: 1570  ERRSVLSQQKDIEENYARS---NMKKGKKQKQYTKAELHLFLKRYLLFQLRWDETLNQRM 1626

Query: 8821  INNIKVYCLLLRLVDPRKITISSLQKREMSLDIMLIQKNLTLTELMKKGVLIIEPIRLFG 8642
             I NI VYCLLL+L+D RKITISS+QK+EMSLDIM+I KNLTL+E MKKGV I+EPIRL  
Sbjct: 1627  IKNINVYCLLLKLIDLRKITISSIQKKEMSLDIMMINKNLTLSEFMKKGVFILEPIRLSE 1686

Query: 8641  KKDGQFIMYQTIGISLVHKSKHQTNQKYQEQRYVSKNNLDEAISPYQRLTGNRNKNRFDL 8462
             +KDG+FIMYQTIGISLVHK+KH   QKYQEQ + S NN +E IS +QR+TG R+KNRFDL
Sbjct: 1687  QKDGKFIMYQTIGISLVHKNKH---QKYQEQGHASNNNFNETISTHQRITGTRDKNRFDL 1743

Query: 8461  LVPENILSFRHRRKFRILICFNSKNRNDIDRNLVFLNEKNVKNSSKVSHDNNHLDREENQ 8282
             LV EN+LSFR RRK RILIC NSKNRN I++N VF    NVKNSS+VSH NNHLDR++NQ
Sbjct: 1744  LVTENLLSFRLRRKLRILICLNSKNRNSIEKNPVFW---NVKNSSQVSHYNNHLDRDKNQ 1800

Query: 8281  LMKFKLFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHLYPRLKI 8144
             LMK KLFLWPNYRLEDLACMNRYWFDTNNGSRF MLRIHLYPRLKI
Sbjct: 1801  LMKLKLFLWPNYRLEDLACMNRYWFDTNNGSRFGMLRIHLYPRLKI 1846