BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00002023
         (3511 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II su...  2120   0.0  
ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II su...  2113   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2108   0.0  
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su...  2099   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...  2098   0.0  
ref|XP_002519060.1| PREDICTED: DNA-directed RNA polymerase II su...  2098   0.0  
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su...  2097   0.0  
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i...  2094   0.0  
ref|XP_015889960.1| PREDICTED: DNA-directed RNA polymerase II su...  2093   0.0  
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  2093   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  2092   0.0  
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su...  2092   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  2092   0.0  
ref|XP_015066015.1| PREDICTED: DNA-directed RNA polymerase II su...  2091   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  2091   0.0  
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su...  2090   0.0  
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su...  2090   0.0  
ref|XP_014501986.1| PREDICTED: DNA-directed RNA polymerase II su...  2086   0.0  
gb|KOM39913.1| hypothetical protein LR48_Vigan04g011100 [Vigna a...  2086   0.0  
ref|XP_003589372.2| DNA-directed RNA polymerase subunit beta [Me...  2085   0.0  

>ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Erythranthe
            guttata] gi|604344639|gb|EYU43393.1| hypothetical protein
            MIMGU_mgv1a000385mg [Erythranthe guttata]
          Length = 1197

 Score = 2120 bits (5493), Expect = 0.0
 Identities = 1061/1152 (92%), Positives = 1073/1152 (93%), Gaps = 41/1152 (3%)
 Frame = +2

Query: 179  KESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 358
            +E  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ
Sbjct: 18   EEEDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 76

Query: 359  HNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 538
            HNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK
Sbjct: 77   HNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 136

Query: 539  RVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 718
            RVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI
Sbjct: 137  RVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 196

Query: 719  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSA 898
            INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMF+RML+RTSA
Sbjct: 197  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFIRMLARTSA 256

Query: 899  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEE 1078
            KGGSSGQYIRATLPYIR+EIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEE
Sbjct: 257  KGGSSGQYIRATLPYIRSEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEE 316

Query: 1079 AFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 1258
            AFVIQNQQVALDYIGKRGATVGVTR++RIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY
Sbjct: 317  AFVIQNQQVALDYIGKRGATVGVTRDRRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 376

Query: 1259 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 1438
            IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGK
Sbjct: 377  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 436

Query: 1439 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 1618
            DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 437  DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 496

Query: 1619 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 1798
            IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW
Sbjct: 497  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 556

Query: 1799 GTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRL 1978
            GTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVST       VDVNTEVGVVRDIRL
Sbjct: 557  GTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRL 616

Query: 1979 KELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXX 2158
            KELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKG        
Sbjct: 617  KELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGFIEYIDTE 676

Query: 2159 XXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 2338
                       NDLVSAR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 677  EEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 736

Query: 2339 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL----------------- 2467
            QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                 
Sbjct: 737  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISC 796

Query: 2468 -----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS 2578
                                     FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS
Sbjct: 797  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS 856

Query: 2579 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQA-ARYTKRDHSTSLRHSETGMVD 2755
            YDKLDDDGLAPPGTRVSGEDVIIGKTTPI PDEAQGQA ARYTKRDHSTSLRHSETGMVD
Sbjct: 857  YDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVD 916

Query: 2756 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDI 2935
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGI PDI
Sbjct: 917  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDI 976

Query: 2936 IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 3115
            IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG+E
Sbjct: 977  IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGYE 1036

Query: 3116 TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 3295
            TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 1037 TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1096

Query: 3296 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDI 3475
            GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE+CGLIAIANLKKNSFECR CKNKTDI
Sbjct: 1097 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLIAIANLKKNSFECRACKNKTDI 1156

Query: 3476 VQVHIPYACKLL 3511
            VQVHIPYACKLL
Sbjct: 1157 VQVHIPYACKLL 1168


>ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sesamum
            indicum]
          Length = 1193

 Score = 2113 bits (5475), Expect = 0.0
 Identities = 1054/1152 (91%), Positives = 1074/1152 (93%), Gaps = 40/1152 (3%)
 Frame = +2

Query: 176  KKESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 355
            ++E + + IT Q DAW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+ADIEIRPES
Sbjct: 14   EEEDEDEEIT-QEDAWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIRPES 72

Query: 356  QHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 535
            QHNPGHQP+FAETIYKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDVT
Sbjct: 73   QHNPGHQPEFAETIYKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVT 132

Query: 536  KRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 715
            KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF
Sbjct: 133  KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 192

Query: 716  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTS 895
            IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSR S
Sbjct: 193  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRAS 252

Query: 896  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLE 1075
            AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNF DTQMMELLRPSLE
Sbjct: 253  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSDTQMMELLRPSLE 312

Query: 1076 EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG 1255
            EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG
Sbjct: 313  EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG 372

Query: 1256 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNG 1435
            YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNG
Sbjct: 373  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNG 432

Query: 1436 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 1615
            KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS
Sbjct: 433  KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 492

Query: 1616 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 1795
            PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE
Sbjct: 493  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 552

Query: 1796 WGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIR 1975
            WGTENF+EISPAVIPQATKIFVNGCWVGIHRNPDMLVST       VDVNTEVGVVRDIR
Sbjct: 553  WGTENFKEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIR 612

Query: 1976 LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXX 2155
            LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI+ALQQRESP+DGGWHDLVAKG       
Sbjct: 613  LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGFIEYIDT 672

Query: 2156 XXXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 2335
                         DLV+ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT
Sbjct: 673  EEEETTMISMTIGDLVNARLNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 732

Query: 2336 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL---------------- 2467
            YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                
Sbjct: 733  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 792

Query: 2468 ------------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 2575
                                      FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG
Sbjct: 793  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 852

Query: 2576 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVD 2755
            SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+PD+AQGQAARYTKRDHSTSLRHSETG+VD
Sbjct: 853  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGIVD 912

Query: 2756 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDI 2935
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGI PDI
Sbjct: 913  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDI 972

Query: 2936 IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 3115
            IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE
Sbjct: 973  IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1032

Query: 3116 TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 3295
            TMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 1033 TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1092

Query: 3296 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDI 3475
            GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE+CGLIAIANLKKNSFECRGCKNKTDI
Sbjct: 1093 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDI 1152

Query: 3476 VQVHIPYACKLL 3511
            VQVHIPYACKLL
Sbjct: 1153 VQVHIPYACKLL 1164


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2108 bits (5463), Expect = 0.0
 Identities = 1052/1150 (91%), Positives = 1070/1150 (93%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            E +++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   EDEEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIK+KDIQALQQRE+P+DGGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLVSARLNP EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDV+IGKTTPIA DEAQG AARYT+RDHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+LTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
            curcas]
          Length = 1193

 Score = 2099 bits (5439), Expect = 0.0
 Identities = 1046/1152 (90%), Positives = 1070/1152 (92%), Gaps = 40/1152 (3%)
 Frame = +2

Query: 176  KKESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 355
            +++  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES
Sbjct: 14   EEDDGEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 72

Query: 356  QHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 535
            QHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT
Sbjct: 73   QHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 132

Query: 536  KRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 715
            KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF
Sbjct: 133  KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 192

Query: 716  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTS 895
            IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRMLSRTS
Sbjct: 193  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTS 252

Query: 896  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLE 1075
            AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLE
Sbjct: 253  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLE 312

Query: 1076 EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG 1255
            EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG
Sbjct: 313  EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG 372

Query: 1256 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNG 1435
            YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVRSYVQKCVDNG
Sbjct: 373  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQKCVDNG 432

Query: 1436 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 1615
            KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS
Sbjct: 433  KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 492

Query: 1616 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 1795
            PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE
Sbjct: 493  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 552

Query: 1796 WGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIR 1975
            WGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T       VDVNTEVGVVRDIR
Sbjct: 553  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 612

Query: 1976 LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXX 2155
            LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES ++GGWHDLVAKG       
Sbjct: 613  LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDT 672

Query: 2156 XXXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 2335
                        +DLV AR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT
Sbjct: 673  EEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 732

Query: 2336 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL---------------- 2467
            YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                
Sbjct: 733  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 792

Query: 2468 ------------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 2575
                                      FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG
Sbjct: 793  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 852

Query: 2576 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVD 2755
            SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA +EAQGQ+ARYT+RDHS SLRHSETG+VD
Sbjct: 853  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVD 912

Query: 2756 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDI 2935
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDI
Sbjct: 913  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 972

Query: 2936 IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 3115
            IVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE
Sbjct: 973  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1032

Query: 3116 TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 3295
            TMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 1033 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1092

Query: 3296 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDI 3475
            GEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDI
Sbjct: 1093 GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDI 1152

Query: 3476 VQVHIPYACKLL 3511
            VQVHIPYACKLL
Sbjct: 1153 VQVHIPYACKLL 1164


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 2098 bits (5436), Expect = 0.0
 Identities = 1044/1150 (90%), Positives = 1067/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            E +++    Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 22   EEEEEEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 81

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPG QPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KR
Sbjct: 82   NPGQQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKR 141

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 142  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 201

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE QNRPPSTMFVRMLSRTSAK
Sbjct: 202  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAK 261

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC+N  DTQMMELLRPSLEEA
Sbjct: 262  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEA 321

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 322  FVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 381

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD
Sbjct: 382  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 441

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQF IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL+SPI
Sbjct: 442  VNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPI 501

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 502  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 561

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHRNPDMLVST       VDVNTEVGVVRDIRLK
Sbjct: 562  TENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLK 621

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIKKKD+QALQQRESPDDGGWH+LVAKG         
Sbjct: 622  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEE 681

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDL+SA++NP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 682  EETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 741

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 742  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 801

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSY
Sbjct: 802  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 861

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTR SGEDVIIGKTTPI+PD+AQGQAARYTKRDHSTSLRHSETGMVDQV
Sbjct: 862  DKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQV 921

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 922  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIV 981

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 982  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1041

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L+SMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1042 YNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1101

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYRIHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1102 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQ 1161

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1162 VHIPYACKLL 1171


>ref|XP_002519060.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ricinus
            communis] gi|223541723|gb|EEF43271.1| DNA-directed RNA
            polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2098 bits (5435), Expect = 0.0
 Identities = 1045/1150 (90%), Positives = 1065/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            E + +    Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 16   EDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 76   NPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII
Sbjct: 136  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA 315

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 316  FVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 375

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD
Sbjct: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 435

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 436  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES ++GGWHDLVAKG         
Sbjct: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEE 675

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      +DLV AR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 676  EETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY
Sbjct: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 855

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPIA +EAQGQ+ARYT+RDHS SLRHSETG+VDQV
Sbjct: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQV 915

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1096 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1155

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1156 VHIPYACKLL 1165


>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
            polymerase II subunit RPB2 [Gossypium arboreum]
            gi|763801668|gb|KJB68623.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
            gi|763801669|gb|KJB68624.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
          Length = 1189

 Score = 2097 bits (5434), Expect = 0.0
 Identities = 1042/1141 (91%), Positives = 1063/1141 (93%), Gaps = 40/1141 (3%)
 Frame = +2

Query: 209  QXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFA 388
            Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFA
Sbjct: 22   QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFA 81

Query: 389  ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIRKGHDGE 568
            ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI+KGHDGE
Sbjct: 82   ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 141

Query: 569  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 748
            EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA
Sbjct: 142  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 201

Query: 749  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIR 928
            QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIR
Sbjct: 202  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 261

Query: 929  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVA 1108
            ATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVA
Sbjct: 262  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVA 321

Query: 1109 LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 1288
            LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCAL
Sbjct: 322  LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAL 381

Query: 1289 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA 1468
            GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA
Sbjct: 382  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA 441

Query: 1469 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 1648
            KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 442  KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 501

Query: 1649 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 1828
            RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP
Sbjct: 502  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 561

Query: 1829 AVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 2008
            AVIPQATKIFVNGCWVG+HRNPDMLV+T       VDVNTEVGVVRDIRLKELRIYTDYG
Sbjct: 562  AVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 621

Query: 2009 RCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXXXXXXXXXXX 2188
            RCSRPLFIVEKQRLLIKKKDI ALQQRE+P+DGGWHDLVAKG                  
Sbjct: 622  RCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 681

Query: 2189 XNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 2368
             NDLV AR+NP EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 682  INDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 741

Query: 2369 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL--------------------------- 2467
            IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                           
Sbjct: 742  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 801

Query: 2468 -------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLA 2608
                           FFRSYRDEEKKMGTLVKEDFGRPDRA TMGMRHGSYDKLDDDGLA
Sbjct: 802  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDDGLA 861

Query: 2609 PPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGL 2788
            PPGTRVSGEDVIIGKTTPI+ +EAQGQA+RY+KRDHS SLRHSETG+VDQVLLTTNADGL
Sbjct: 862  PPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSISLRHSETGIVDQVLLTTNADGL 921

Query: 2789 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHAIPSRM 2968
            RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRM
Sbjct: 922  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 981

Query: 2969 TIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKL 3148
            TIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+L
Sbjct: 982  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRL 1041

Query: 3149 TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 3328
            T+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH
Sbjct: 1042 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1101

Query: 3329 GAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 3508
            GAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL
Sbjct: 1102 GAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1161

Query: 3509 L 3511
            L
Sbjct: 1162 L 1162


>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
            polymerase family protein isoform 1 [Theobroma cacao]
          Length = 1189

 Score = 2094 bits (5426), Expect = 0.0
 Identities = 1040/1141 (91%), Positives = 1064/1141 (93%), Gaps = 40/1141 (3%)
 Frame = +2

Query: 209  QXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFA 388
            Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFA
Sbjct: 22   QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFA 81

Query: 389  ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIRKGHDGE 568
            ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI+KGHDGE
Sbjct: 82   ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 141

Query: 569  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 748
            EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA
Sbjct: 142  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 201

Query: 749  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIR 928
            QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIR
Sbjct: 202  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 261

Query: 929  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVA 1108
            ATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVA
Sbjct: 262  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVA 321

Query: 1109 LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 1288
            LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG++CETKKAYYFGYIIHRLLLCAL
Sbjct: 322  LDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLCAL 381

Query: 1289 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA 1468
            GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA
Sbjct: 382  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA 441

Query: 1469 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 1648
            KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 442  KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 501

Query: 1649 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 1828
            RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP
Sbjct: 502  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 561

Query: 1829 AVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 2008
            AVIPQATKIFVNGCWVG+HRNPDMLV+T       VDVNTEVGVVRDIRLKELRIYTDYG
Sbjct: 562  AVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 621

Query: 2009 RCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXXXXXXXXXXX 2188
            RCSRPLFIVEKQRLLIKKKDI ALQQRESP+DGGWHDLVAKG                  
Sbjct: 622  RCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 681

Query: 2189 XNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 2368
             NDLV AR+NP EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 682  INDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 741

Query: 2369 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL--------------------------- 2467
            IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                           
Sbjct: 742  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 801

Query: 2468 -------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLA 2608
                           FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLA
Sbjct: 802  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLA 861

Query: 2609 PPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGL 2788
            PPGTRVSGEDVIIGKTTPI+ +EAQGQA+RY++RDHS SLRHSETG+VDQVLLTTNADGL
Sbjct: 862  PPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGL 921

Query: 2789 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHAIPSRM 2968
            RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRM
Sbjct: 922  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 981

Query: 2969 TIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKL 3148
            TIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+L
Sbjct: 982  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRL 1041

Query: 3149 TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 3328
            ++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH
Sbjct: 1042 SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1101

Query: 3329 GAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 3508
            GAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKL
Sbjct: 1102 GAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKL 1161

Query: 3509 L 3511
            L
Sbjct: 1162 L 1162


>ref|XP_015889960.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ziziphus
            jujuba]
          Length = 1191

 Score = 2093 bits (5423), Expect = 0.0
 Identities = 1045/1151 (90%), Positives = 1066/1151 (92%), Gaps = 41/1151 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 13   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 71

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 72   NPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 131

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII
Sbjct: 132  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 191

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+K
Sbjct: 192  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSK 251

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 252  GGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFTDTQMMELLRPSLEEA 311

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYI
Sbjct: 312  FVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYI 371

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKD
Sbjct: 372  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKD 431

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 432  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 491

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 492  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 551

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 552  TENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLK 611

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRESP+DGGWHDLV+KG         
Sbjct: 612  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEE 671

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV AR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 672  EETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 731

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 732  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 791

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY
Sbjct: 792  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 851

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAA-RYTKRDHSTSLRHSETGMVDQ 2758
            DKLDDDGLAPPGTRVSGEDVIIGKTTPIA DEAQGQAA RYT+RDHS SLRHSETG+VDQ
Sbjct: 852  DKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHSETGIVDQ 911

Query: 2759 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDII 2938
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDII
Sbjct: 912  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 971

Query: 2939 VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 3118
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFET
Sbjct: 972  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFET 1031

Query: 3119 MYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 3298
            MYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG
Sbjct: 1032 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1091

Query: 3299 EMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIV 3478
            EMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIV
Sbjct: 1092 EMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIV 1151

Query: 3479 QVHIPYACKLL 3511
            QVHIPYACKLL
Sbjct: 1152 QVHIPYACKLL 1162


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Citrus
            sinensis]
          Length = 1195

 Score = 2093 bits (5423), Expect = 0.0
 Identities = 1042/1153 (90%), Positives = 1070/1153 (92%), Gaps = 40/1153 (3%)
 Frame = +2

Query: 173  RKKESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 352
            +++E +++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 14   QEEEDEEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72

Query: 353  SQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 532
            SQHNPG Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132

Query: 533  TKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 712
            TKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133  TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192

Query: 713  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRT 892
            FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRT
Sbjct: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252

Query: 893  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSL 1072
            SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FQDTQMMELLRPSL
Sbjct: 253  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312

Query: 1073 EEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYF 1252
            EEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYF
Sbjct: 313  EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372

Query: 1253 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN 1432
            GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDN
Sbjct: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432

Query: 1433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 1612
            GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492

Query: 1613 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 1792
            SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE
Sbjct: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552

Query: 1793 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDI 1972
            EWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T       VDVNTEVGVVRDI
Sbjct: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612

Query: 1973 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXX 2152
            RLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP+DGGWHDLVAKG      
Sbjct: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672

Query: 2153 XXXXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2332
                         NDLV ARL+P EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732

Query: 2333 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL--------------- 2467
            TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL               
Sbjct: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792

Query: 2468 -------------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRH 2572
                                       FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRH
Sbjct: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852

Query: 2573 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMV 2752
            GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DEAQGQA+RYT+RDHS SLRHSETGMV
Sbjct: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMV 912

Query: 2753 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPD 2932
            DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PD
Sbjct: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972

Query: 2933 IIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 3112
            IIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF
Sbjct: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032

Query: 3113 ETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 3292
            ETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092

Query: 3293 FGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTD 3472
            FGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTD
Sbjct: 1093 FGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152

Query: 3473 IVQVHIPYACKLL 3511
            IVQVHIPYACKLL
Sbjct: 1153 IVQVHIPYACKLL 1165


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
            gi|641824899|gb|KDO44201.1| hypothetical protein
            CISIN_1g000996mg [Citrus sinensis]
          Length = 1195

 Score = 2092 bits (5420), Expect = 0.0
 Identities = 1041/1153 (90%), Positives = 1070/1153 (92%), Gaps = 40/1153 (3%)
 Frame = +2

Query: 173  RKKESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 352
            +++E +++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 14   QEEEDEEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72

Query: 353  SQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 532
            SQHNPG Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132

Query: 533  TKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 712
            TKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133  TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192

Query: 713  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRT 892
            FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRT
Sbjct: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252

Query: 893  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSL 1072
            SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FQDTQMMELLRPSL
Sbjct: 253  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312

Query: 1073 EEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYF 1252
            EEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYF
Sbjct: 313  EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372

Query: 1253 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN 1432
            GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDN
Sbjct: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432

Query: 1433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 1612
            GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492

Query: 1613 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 1792
            SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE
Sbjct: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552

Query: 1793 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDI 1972
            EWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLV T       VDVNTEVGVVRDI
Sbjct: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612

Query: 1973 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXX 2152
            RLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP+DGGWHDLVAKG      
Sbjct: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672

Query: 2153 XXXXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2332
                         NDLV ARL+P EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732

Query: 2333 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL--------------- 2467
            TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL               
Sbjct: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792

Query: 2468 -------------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRH 2572
                                       FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRH
Sbjct: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852

Query: 2573 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMV 2752
            GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DEAQGQA+RYT+RDHS SLRHSETGMV
Sbjct: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMV 912

Query: 2753 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPD 2932
            DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PD
Sbjct: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972

Query: 2933 IIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 3112
            IIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF
Sbjct: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032

Query: 3113 ETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 3292
            ETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092

Query: 3293 FGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTD 3472
            FGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTD
Sbjct: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152

Query: 3473 IVQVHIPYACKLL 3511
            IVQVHIPYACKLL
Sbjct: 1153 IVQVHIPYACKLL 1165


>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1191

 Score = 2092 bits (5419), Expect = 0.0
 Identities = 1042/1150 (90%), Positives = 1067/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP++GGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV ARLNP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRA+TMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT++DHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2092 bits (5419), Expect = 0.0
 Identities = 1042/1150 (90%), Positives = 1066/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPD+GGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRA+TMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT++DHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|XP_015066015.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Solanum
            pennellii]
          Length = 1191

 Score = 2091 bits (5418), Expect = 0.0
 Identities = 1042/1150 (90%), Positives = 1065/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPD+GGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRA TMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT++DHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Solanum
            tuberosum]
          Length = 1191

 Score = 2091 bits (5417), Expect = 0.0
 Identities = 1042/1150 (90%), Positives = 1065/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPD+GGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRA TMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT++DHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
            euphratica]
          Length = 1198

 Score = 2090 bits (5416), Expect = 0.0
 Identities = 1043/1150 (90%), Positives = 1065/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            E   + IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 21   EDADEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 79

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 80   NPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 139

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII
Sbjct: 140  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 199

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 200  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAK 259

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 260  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA 319

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYI
Sbjct: 320  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYI 379

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD
Sbjct: 380  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 439

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 440  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 499

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 500  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 559

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 560  TENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLK 619

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQ+LLI+KKDI ALQQRE+PD+GGWHDLV+KG         
Sbjct: 620  ELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGFIEYIDTEE 679

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      +DLV ARLNP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 680  EETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 739

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 740  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 799

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSY
Sbjct: 800  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 859

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPIA +EAQGQ+ARYT+RDHS SLRHSETGMVDQV
Sbjct: 860  DKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGMVDQV 919

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 920  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 979

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 980  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1039

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1040 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1099

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1100 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1159

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1160 VHIPYACKLL 1169


>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana sylvestris]
          Length = 1191

 Score = 2090 bits (5414), Expect = 0.0
 Identities = 1041/1150 (90%), Positives = 1067/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            +  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 14   DDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 72

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR
Sbjct: 73   NPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 132

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFII
Sbjct: 133  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFII 192

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAK
Sbjct: 193  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAK 252

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 253  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA 312

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYI
Sbjct: 313  FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYI 372

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKD
Sbjct: 373  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 432

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 553  TENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLK 612

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP++GGWHDLVAKG         
Sbjct: 613  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEE 672

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV ARLNP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 673  EETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 732

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 733  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 792

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRA+TMGMRHGSY
Sbjct: 793  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSY 852

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT++DHSTSLRHSETGMVDQV
Sbjct: 853  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQV 912

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 913  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 972

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 973  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKK+SFECRGCKNKTDIVQ
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNKTDIVQ 1152

Query: 3482 VHIPYACKLL 3511
            VHIPYACKLL
Sbjct: 1153 VHIPYACKLL 1162


>ref|XP_014501986.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Vigna
            radiata var. radiata]
          Length = 1195

 Score = 2086 bits (5405), Expect = 0.0
 Identities = 1038/1150 (90%), Positives = 1065/1150 (92%), Gaps = 40/1150 (3%)
 Frame = +2

Query: 182  ESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 361
            E  +  IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH
Sbjct: 17   EEDEDEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75

Query: 362  NPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 541
            NPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KR
Sbjct: 76   NPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKR 135

Query: 542  VIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 721
            VI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII
Sbjct: 136  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195

Query: 722  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAK 901
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+K
Sbjct: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSK 255

Query: 902  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEA 1081
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEA
Sbjct: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA 315

Query: 1082 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 1261
            FVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYI
Sbjct: 316  FVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYI 375

Query: 1262 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 1441
            IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKD
Sbjct: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435

Query: 1442 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 1621
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 436  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495

Query: 1622 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 1801
            GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG
Sbjct: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555

Query: 1802 TENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRLK 1981
            TENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T       VDVNTEVGVVRDIRLK
Sbjct: 556  TENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLK 615

Query: 1982 ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXXX 2161
            ELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRESP++GGWHDLV+KG         
Sbjct: 616  ELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGGWHDLVSKGYIEYIDTEE 675

Query: 2162 XXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 2341
                      NDLV AR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 676  EETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735

Query: 2342 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------------------ 2467
            SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                  
Sbjct: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCY 795

Query: 2468 ----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 2581
                                    FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY
Sbjct: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSY 855

Query: 2582 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQV 2761
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+ +EAQGQA RYT+RDHS SLRHSETG+VDQV
Sbjct: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQV 915

Query: 2762 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIV 2941
            LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIV
Sbjct: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975

Query: 2942 NPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 3121
            NPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035

Query: 3122 YNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 3301
            YNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1036 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095

Query: 3302 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 3481
            MERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGCKNKTDIVQ
Sbjct: 1096 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQ 1155

Query: 3482 VHIPYACKLL 3511
            V IPYACKLL
Sbjct: 1156 VFIPYACKLL 1165


>gb|KOM39913.1| hypothetical protein LR48_Vigan04g011100 [Vigna angularis]
            gi|965664365|dbj|BAT80074.1| hypothetical protein
            VIGAN_02303700 [Vigna angularis var. angularis]
          Length = 1197

 Score = 2086 bits (5405), Expect = 0.0
 Identities = 1035/1151 (89%), Positives = 1065/1151 (92%), Gaps = 40/1151 (3%)
 Frame = +2

Query: 179  KESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 358
            +E + +    Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ
Sbjct: 17   EEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 76

Query: 359  HNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 538
            HNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K
Sbjct: 77   HNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSK 136

Query: 539  RVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 718
            RVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+
Sbjct: 137  RVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFV 196

Query: 719  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSA 898
            INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+
Sbjct: 197  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSS 256

Query: 899  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEE 1078
            KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEE
Sbjct: 257  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEE 316

Query: 1079 AFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 1258
            AFVIQNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGY
Sbjct: 317  AFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGY 376

Query: 1259 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 1438
            IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK
Sbjct: 377  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 436

Query: 1439 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 1618
            DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 437  DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 496

Query: 1619 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 1798
            IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW
Sbjct: 497  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 556

Query: 1799 GTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIRL 1978
            GTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T       VDVNTEVGVVRDIRL
Sbjct: 557  GTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRL 616

Query: 1979 KELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXXX 2158
            KELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRESP++GGWHDLV+KG        
Sbjct: 617  KELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGGWHDLVSKGFIEYIDTE 676

Query: 2159 XXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 2338
                       NDLV AR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 677  EEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 736

Query: 2339 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL----------------- 2467
            QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                 
Sbjct: 737  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISC 796

Query: 2468 -----------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS 2578
                                     FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS
Sbjct: 797  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGS 856

Query: 2579 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVDQ 2758
            YDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ +EAQGQA RYT+RDHS SLRHSETG+VDQ
Sbjct: 857  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQ 916

Query: 2759 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDII 2938
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDII
Sbjct: 917  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 976

Query: 2939 VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 3118
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET
Sbjct: 977  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1036

Query: 3119 MYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 3298
            MYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG
Sbjct: 1037 MYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1096

Query: 3299 EMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIV 3478
            EMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGCKNKTDIV
Sbjct: 1097 EMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIV 1156

Query: 3479 QVHIPYACKLL 3511
            QV IPYACKLL
Sbjct: 1157 QVFIPYACKLL 1167


>ref|XP_003589372.2| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|657401188|gb|AES59623.2| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1195

 Score = 2085 bits (5403), Expect = 0.0
 Identities = 1037/1152 (90%), Positives = 1066/1152 (92%), Gaps = 40/1152 (3%)
 Frame = +2

Query: 176  KKESKQKSITKQXDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 355
            ++E  ++ IT Q DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES
Sbjct: 16   EEEDDEEEIT-QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 74

Query: 356  QHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 535
            QHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+
Sbjct: 75   QHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVS 134

Query: 536  KRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 715
            KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF
Sbjct: 135  KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 194

Query: 716  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTS 895
            IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRMLSR S
Sbjct: 195  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRAS 254

Query: 896  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLE 1075
            AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLE
Sbjct: 255  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLE 314

Query: 1076 EAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFG 1255
            EAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAK+ILQKEMLPHVGVGEYCETKKAYYFG
Sbjct: 315  EAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFG 374

Query: 1256 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNG 1435
            YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNG
Sbjct: 375  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNG 434

Query: 1436 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 1615
            KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS
Sbjct: 435  KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 494

Query: 1616 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 1795
            PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE
Sbjct: 495  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 554

Query: 1796 WGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTXXXXXXXVDVNTEVGVVRDIR 1975
            WGTENFEEISPAVIPQATKIFVNGCW+GIHR+PDMLV T       VDVNTEVGVVRDIR
Sbjct: 555  WGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIR 614

Query: 1976 LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGXXXXXXX 2155
            LKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI +LQQRESP+DGGWHDLV+KG       
Sbjct: 615  LKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDT 674

Query: 2156 XXXXXXXXXXXXNDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 2335
                        NDLV ARLNP EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT
Sbjct: 675  EEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 734

Query: 2336 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL---------------- 2467
            YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL                
Sbjct: 735  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 794

Query: 2468 ------------------------XXFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 2575
                                      FFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG
Sbjct: 795  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG 854

Query: 2576 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEAQGQAARYTKRDHSTSLRHSETGMVD 2755
            SYDKLDDDGLAPPGTRVSGEDVIIGKTTP++ +E QGQAARY+KRDHS SLRHSETG+VD
Sbjct: 855  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVD 914

Query: 2756 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDI 2935
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDI
Sbjct: 915  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 974

Query: 2936 IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 3115
            IVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE
Sbjct: 975  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1034

Query: 3116 TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 3295
            TMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 1035 TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1094

Query: 3296 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDI 3475
            GEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDI
Sbjct: 1095 GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDI 1154

Query: 3476 VQVHIPYACKLL 3511
            VQV+IPYACKLL
Sbjct: 1155 VQVYIPYACKLL 1166