BLASTX nr result
ID: Rehmannia28_contig00001677
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00001677
(793 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011073037.1| PREDICTED: retrovirus-related Pol polyprotei... 218 5e-65
ref|XP_011070172.1| PREDICTED: glutamate receptor 2.8-like [Sesa... 191 7e-52
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 167 2e-44
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 142 7e-35
gb|AAK29467.1| polyprotein-like [Solanum chilense] 141 1e-34
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 141 1e-34
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 141 1e-34
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 139 8e-34
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 139 8e-34
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 137 3e-33
ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905... 136 7e-33
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 134 4e-32
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 130 1e-31
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 130 3e-31
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 131 4e-31
gb|KYP53137.1| Retrovirus-related Pol polyprotein from transposo... 128 4e-31
gb|KYP34487.1| Retrovirus-related Pol polyprotein from transposo... 129 5e-31
emb|CDP17738.1| unnamed protein product [Coffea canephora] 130 8e-31
gb|KYP48283.1| Retrovirus-related Pol polyprotein from transposo... 127 9e-31
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo... 129 1e-30
>ref|XP_011073037.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Sesamum indicum]
Length = 472
Score = 218 bits (556), Expect = 5e-65
Identities = 125/272 (45%), Positives = 172/272 (63%), Gaps = 8/272 (2%)
Frame = -2
Query: 792 DLKVNKGGRQNSGEVMHVRGRSQY-----RFDNQQKFDNHQNQNSNXXXXXXXXXXXXXX 628
DLKVNK Q+ E+ VRGR+++ R++++ + N++ +
Sbjct: 181 DLKVNKPS-QSHYEINSVRGRTRFGNFNSRYNSRSRSKTKTNRSKSRPRETNLRDDKIRD 239
Query: 627 XXXKCYNCGEVGHYIREC--PNKKGNQNQSNDQANLASTS-ENAGDIFMVTGICDVPIVN 457
CYNCG GHYI++C P ++ +D+ +++ S E+ G++F+V N
Sbjct: 240 RR--CYNCGTKGHYIKDCRKPRRENRDRNYDDKEKVSNVSIESNGEVFVVYE------AN 291
Query: 456 SVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKF 277
SV ST +EWLIDS CTFHMSPFK++F+N K FVSMANEKKC + G+GDI L F
Sbjct: 292 SV--STFDMHEWLIDSGCTFHMSPFKDIFTNLKYEHAGFVSMANEKKCEIKGLGDISLCF 349
Query: 276 DSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLY 97
D GY LKNVR+VPDL +NL+SCAALE++GLEGR+G GLMKI+KGSLV+FKA ++ NLY
Sbjct: 350 D-GYKMLLKNVRYVPDLSHNLISCAALEENGLEGRWGKGLMKIMKGSLVVFKAERKRNLY 408
Query: 96 VCIGKPVSFAGNSVNVVQEDKTDLWHKRLGHM 1
+C S+ + +V D T LWHKRLGH+
Sbjct: 409 IC---TASYDNIAASVSVCDLTSLWHKRLGHI 437
>ref|XP_011070172.1| PREDICTED: glutamate receptor 2.8-like [Sesamum indicum]
Length = 1131
Score = 191 bits (485), Expect = 7e-52
Identities = 105/227 (46%), Positives = 143/227 (62%), Gaps = 5/227 (2%)
Frame = -2
Query: 792 DLKVNKGGRQNSGEVMHVRGRSQYR---FDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXX 622
DL+ NK QN EV VRGR ++R ++ + +N N
Sbjct: 218 DLRANKPS-QNQHEVNSVRGRPKFRNSRYNRSKSRSKSRNGYRNKSRPRENFNNDDKTRE 276
Query: 621 XKCYNCGEVGHYIRECPN-KKGNQNQSNDQANLASTS-ENAGDIFMVTGICDVPIVNSVH 448
+CYNCG GHYI++C +K N+++ ++ + + S EN G++F+V C+ VNS
Sbjct: 277 RRCYNCGIKGHYIKDCRKPRKDNRDRYEEKEKVNNVSDENNGEVFVV---CEANSVNSFD 333
Query: 447 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 268
+EWLIDS CTFHMSPFK++F+N + FVSMANEK+C + G+GDI + F G
Sbjct: 334 M-----HEWLIDSGCTFHMSPFKDIFTNLRYEHAGFVSMANEKRCEIEGLGDISMCFKDG 388
Query: 267 YAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVI 127
Y TLKNVR+VPDL +NL+SCAALE+DGLEGR+G GLMKI+KGSLV+
Sbjct: 389 YKMTLKNVRYVPDLSHNLISCAALEEDGLEGRWGKGLMKIMKGSLVV 435
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 167 bits (422), Expect = 2e-44
Identities = 83/154 (53%), Positives = 112/154 (72%)
Frame = -2
Query: 462 VNSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICL 283
VNSV +S + ENEWL+DSAC++HM+P + +FS+Y ++KN V++A+ V GIG +CL
Sbjct: 5 VNSVLAS-LSENEWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTMIVVNGIGTVCL 63
Query: 282 KFDSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNN 103
KF SG TLKNVRHVP L +NL+SCA LEDDG G +G+G M I+KGS +FKA++ N
Sbjct: 64 KFVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRMGN 123
Query: 102 LYVCIGKPVSFAGNSVNVVQEDKTDLWHKRLGHM 1
+YVC + + S+NVVQ D ++LWHK LGHM
Sbjct: 124 MYVCSAE----SSASMNVVQNDLSELWHKGLGHM 153
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 142 bits (358), Expect = 7e-35
Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 10/270 (3%)
Frame = -2
Query: 780 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCG 601
N G + GE +HVRGR++ R N++ +D S C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-----------CVYCK 236
Query: 600 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 259
+EW++DSAC+FH+ +N FS+YK V K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 258 TLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGK 82
TLKNVR++P + NL+S + L+ +G + +G++K+ KGSLV K V LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGC 405
Query: 81 PVSFAGNSVNVVQED---KTDLWHKRLGHM 1
++ + ++ + D KT+LWH RLGHM
Sbjct: 406 TLTGSDSAAAAITNDEPSKTNLWHMRLGHM 435
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 141 bits (356), Expect = 1e-34
Identities = 79/208 (37%), Positives = 114/208 (54%), Gaps = 4/208 (1%)
Frame = -2
Query: 615 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
CYNC + GH+ R+CPN K + +S+ Q N +T+ MV DV ++ + +
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAA------MVQNNDDVVLLINEEEECM 286
Query: 435 ----CENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 268
E+EW++D+A ++H +P ++LF Y V M N + GIGDIC K + G
Sbjct: 287 HLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVG 346
Query: 267 YAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCI 88
LK+VRHVPDL NL+S AL+ DG E F N ++ KG+LVI K V R LY
Sbjct: 347 CTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTN 406
Query: 87 GKPVSFAGNSVNVVQEDKTDLWHKRLGH 4
+ N+ + +E+ DLWHKR+GH
Sbjct: 407 AEICQGELNAAH--EENSADLWHKRMGH 432
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 141 bits (356), Expect = 1e-34
Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 10/270 (3%)
Frame = -2
Query: 780 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCG 601
N G + GE +HVRGR++ R N++ +D S C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-----------CVYCK 236
Query: 600 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 259
+EW++DSAC+FH+ +N FS+YK V K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 258 TLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGK 82
TLKNVR++P + NL+S + L+ +G + +G++K+ KGSLV K + LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 405
Query: 81 PVSFAGNSVNVVQED---KTDLWHKRLGHM 1
++ + ++ V D KT+LWH RLGHM
Sbjct: 406 TLTGSDSAAAAVTNDEPSKTNLWHMRLGHM 435
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 141 bits (356), Expect = 1e-34
Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 10/270 (3%)
Frame = -2
Query: 780 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCG 601
N G + GE +HVRGR++ R N++ +D S C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-----------CVYCK 236
Query: 600 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 259
+EW++DSAC+FH+ +N FS+YK V K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 258 TLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGK 82
TLKNVR++P + NL+S + L+ +G + +G++K+ KGSLV K + LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 405
Query: 81 PVSFAGNSVNVVQED---KTDLWHKRLGHM 1
++ + ++ V D KT+LWH RLGHM
Sbjct: 406 TLTGSDSAAAAVTNDEPSKTNLWHMRLGHM 435
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 139 bits (350), Expect = 8e-34
Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 12/267 (4%)
Frame = -2
Query: 765 QNSGEVMHV--RGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCGEVG 592
+N G+ + RGRS R N + ++ N CYNC + G
Sbjct: 190 ENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN----------CYNCNQPG 239
Query: 591 HYIRECPN-KKGN---QNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCENE 424
H+ R+CPN +KG Q ND A N + + +H S E+E
Sbjct: 240 HFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFIN-----EEEECMHLSGP-ESE 293
Query: 423 WLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNV 244
W++D+A + H +P ++LF Y V M N + GIGDIC+K + G LK+V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 243 RHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLY-----VCIGKP 79
RHVPDL NL+S AL+ DG E F N ++ KGSLVI K V R LY +C G+
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGE- 412
Query: 78 VSFAGNSVNVVQED-KTDLWHKRLGHM 1
+N Q++ DLWHKR+GHM
Sbjct: 413 -------LNAAQDEISVDLWHKRMGHM 432
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 139 bits (350), Expect = 8e-34
Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Frame = -2
Query: 780 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCG 601
N G + GE +HVRGR++ + N++ +D S C C
Sbjct: 190 NDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKF-----------CVYCK 238
Query: 600 EVGHYIRECPN--KKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCEN 427
H I EC K +N+ + + ++AS + + D +G C V V +
Sbjct: 239 LKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDD----SGDCLVVFAGCVAG----HD 290
Query: 426 EWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 250
EW++DSAC+FH+ +N FS+YK V K V M ++ C + GIG + +K D G TLK
Sbjct: 291 EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 350
Query: 249 NVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVS 73
NVR++P + NL+S + L+ +G + +G++K+ KGSLV K + LYV G +
Sbjct: 351 NVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLP 410
Query: 72 FAGNSVNVVQED---KTDLWHKRLGHM 1
+ ++ V D KT+LWH RLGHM
Sbjct: 411 GSDSAAAAVTNDEPSKTNLWHMRLGHM 437
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 137 bits (344), Expect = 3e-33
Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 3/258 (1%)
Frame = -2
Query: 765 QNSGEVMHVRGRSQYR--FDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCGEVG 592
++ GE + VRGR+Q + N++ + + SN C C + G
Sbjct: 194 EDKGEGLSVRGRTQEKGSTSNKKSRSKSRGRKSNKT----------------CRYCKKFG 237
Query: 591 HYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCENEWLID 412
H I +C K Q + N A + D D ++ SV S + EW++D
Sbjct: 238 HDISDCFILKKKQERQEKGKNPAEAANVETD-------SDGDVMISVSSDKRSKTEWILD 290
Query: 411 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNVRHVP 232
S CTFHM P+K+LF+ + V + V M N+ +C + GIG I +K G TL NVR +P
Sbjct: 291 SGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIP 350
Query: 231 DLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVS-FAGNSV 55
DL NL+S LE G + G++K+ KG++V+ KA + +LY+ G V+ A S
Sbjct: 351 DLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSS 410
Query: 54 NVVQEDKTDLWHKRLGHM 1
++ +D T LWH RLGHM
Sbjct: 411 SMSDKDATKLWHMRLGHM 428
>ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris
subsp. vulgaris]
Length = 2676
Score = 136 bits (343), Expect = 7e-33
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 1/255 (0%)
Frame = -2
Query: 762 NSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCGEVGHYI 583
NS + + VRGRS +Q N C C GH
Sbjct: 192 NSSDGLFVRGRSN------DVASTYQGGNGGKNRGRSKSKKPNSNKHKTCNYCHLKGHIK 245
Query: 582 RECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCENEWLIDSAC 403
EC K N+ + + N+ D+ V + ++ V ++EW++DS C
Sbjct: 246 SECYKLK-NKQSGDSKPRKGKEPMNSADVSYVDFDSESGALD------VSKSEWIMDSGC 298
Query: 402 TFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNVRHVPDLC 223
+FH++P+K++F++Y+E V+M N C V GIG + + G TL VRHVP++
Sbjct: 299 SFHVTPYKDMFTSYEEFNGGTVTMGNNATCKVVGIGSVDITMFDGTVRTLSKVRHVPEMK 358
Query: 222 NNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGN-SVNVV 46
NL+S L+++G + G++ +++G+LV+ K +KR +LYV G VS + N S +
Sbjct: 359 KNLISLGTLDNNGCKYIAEGGVLNVIRGALVLMKGIKRGSLYVLQGSMVSGSANVSTGTM 418
Query: 45 QEDKTDLWHKRLGHM 1
+D T LWH RLGHM
Sbjct: 419 SDDDTKLWHLRLGHM 433
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 134 bits (337), Expect = 4e-32
Identities = 91/270 (33%), Positives = 132/270 (48%), Gaps = 10/270 (3%)
Frame = -2
Query: 780 NKGGRQNSGEVMHV----RGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKC 613
NK RQ+S + M RGRS R + + NH S C
Sbjct: 185 NKEDRQDSSKQMEALTVTRGRSTERGPSGSQ--NHGRSTSRRKTNLK------------C 230
Query: 612 YNCGEVGHYIREC-PNKKGNQNQSN---DQANLASTSENAGDIFMVTGICDVPIVNSVHS 445
YNCG+ GH ++C NKK + S Q +ASTS++ ++ + S
Sbjct: 231 YNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAV-------STKG 283
Query: 444 STVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 265
+ W++DS T+HM+P ++ F Y+ V V M N+ + GIG + +K G
Sbjct: 284 KNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGT 343
Query: 264 AYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCI 88
TL+ VRHV +L NL+S L+D G + G++K++KGSLV+ KA K NLY+ +
Sbjct: 344 IRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLL 403
Query: 87 GKPVSFAGNSVNV-VQEDKTDLWHKRLGHM 1
G A SV V QE+ T +WH+RLGHM
Sbjct: 404 GDTWQMADASVAVGSQEETTMMWHRRLGHM 433
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 130 bits (327), Expect = 1e-31
Identities = 77/208 (37%), Positives = 110/208 (52%), Gaps = 3/208 (1%)
Frame = -2
Query: 615 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
C C E GH+ +CP KK + + S+S+N +V I D N S+
Sbjct: 1 CNYCKEPGHWKNDCPKKKNQKPTAVTVQESTSSSDNE----LVLSIVD----NHQQSA-- 50
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 256
++W++DS C++HM P ++ F Y+E V M N+ C GIG I L+ G T
Sbjct: 51 --DQWVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIRT 108
Query: 255 LKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPV 76
L VRHVPDL NL+S L+ G + NG+M+I +GS V+ + K+ NLY+ G
Sbjct: 109 LTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKGNLYMLQGSTS 168
Query: 75 SFAGNSVNVVQE---DKTDLWHKRLGHM 1
S + SV+V ++ D T LWH RLGHM
Sbjct: 169 SIS-ESVSVAEKNIPDLTYLWHMRLGHM 195
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 130 bits (328), Expect = 3e-31
Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 3/208 (1%)
Frame = -2
Query: 615 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
C C E GH+ ++CP KK NQ A S+ EN +V I D N HS+
Sbjct: 163 CNYCKEPGHWKKDCP-KKRNQKSVAVAAQEDSSFENE----LVLSIVD----NHQHSA-- 211
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 256
+W++DS C++HM P ++ F Y++ V M N+ C GIG I +K G T
Sbjct: 212 --EQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRT 269
Query: 255 LKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPV 76
L VRHVPDL NL+S L G + G+M+I KGS V+ + +K+ NLY+ G
Sbjct: 270 LTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGS-T 328
Query: 75 SFAGNSVNVVQE---DKTDLWHKRLGHM 1
+ SV+V + D T LWH RLGHM
Sbjct: 329 NLISESVSVADKHTPDLTHLWHMRLGHM 356
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 131 bits (330), Expect = 4e-31
Identities = 72/211 (34%), Positives = 119/211 (56%), Gaps = 6/211 (2%)
Frame = -2
Query: 615 CYNCGEVGHYIREC-----PNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSV 451
C+ CG+ GH+ ++C NK Q N +++LA ++E ++ + +V
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDS 280
Query: 450 HSSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDS 271
+ NEW++D+ C+FHM+P K+ F ++KE+ + +V M N+ V GIG I ++
Sbjct: 281 IA-----NEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSD 335
Query: 270 GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 91
G L +VR++P++ NL+S LED G + +G++KI+KG I K KR+ LY+
Sbjct: 336 GSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYIL 395
Query: 90 IGKPVSFAGNSVNVVQ-EDKTDLWHKRLGHM 1
G V+ G S + + +D+T LWH RLGHM
Sbjct: 396 DG--VTEEGESHSSAEVKDETALWHSRLGHM 424
>gb|KYP53137.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 399
Score = 128 bits (321), Expect = 4e-31
Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 9/272 (3%)
Frame = -2
Query: 792 DLKVNKGGRQNSGEVMHV--RGRSQYRF-------DNQQKFDNHQNQNSNXXXXXXXXXX 640
+++ + G ++ V+H RGR+ R DN+ K NH++ N++
Sbjct: 162 EIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSRNHRSSNNSKTIK------ 215
Query: 639 XXXXXXXKCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIV 460
C+NCG+ GHY +C N NQ ++ +AN+ASTS D ++
Sbjct: 216 --------CWNCGQTGHYKNQCKNAPKNQ-EAKAEANIASTSGR-----------DDALI 255
Query: 459 NSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLK 280
S+ S E W++DS +FH + + F NY V + NE+ C + G G + +K
Sbjct: 256 CSLESK---EESWVLDSGASFHATSQREFFENYVPENLGKVYLGNEQSCEIVGKGVVKIK 312
Query: 279 FDSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNL 100
G + LKNVRH+PDL NL+S L +G F KI KG++ I + K L
Sbjct: 313 L-KGSVWELKNVRHIPDLTKNLISVGQLASEGYTTTFHGDNWKISKGAMTIARGKKSGTL 371
Query: 99 YVCIGKPVSFAGNSVNVVQEDKTDLWHKRLGH 4
Y G A + + + D LWH+RLGH
Sbjct: 372 YKTAG-----AYHLIAIAANDNPSLWHQRLGH 398
>gb|KYP34487.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 485
Score = 129 bits (324), Expect = 5e-31
Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 2/248 (0%)
Frame = -2
Query: 738 RGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXKCYNCGEVGHYIREC--PNK 565
RGRS+ R Q KF N C+NC + GH+ +C P K
Sbjct: 218 RGRSKSRAKGQPKFRND----------------------IVCWNCDKRGHFTNQCKAPKK 255
Query: 564 KGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCENEWLIDSACTFHMSP 385
N + +D + + ++ D + + D PI W++DS +FH +P
Sbjct: 256 NKNHKKRDDDESANAATDEIDDALICS--LDSPI-----------ESWIMDSGASFHTTP 302
Query: 384 FKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNVRHVPDLCNNLMSC 205
L +NY + V +A+ K N+ G GDI ++ SG +TLKNVRH+P L NL+S
Sbjct: 303 SNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIRTSSGSHWTLKNVRHIPALKRNLISV 362
Query: 204 AALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGNSVNVVQEDKTDL 25
L+D+G E FG+G K+ KG+L++ + KR +LY+ + + + N + L
Sbjct: 363 GQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSLYMVADENMIAVTEAAN-----NSFL 417
Query: 24 WHKRLGHM 1
WH+RLGHM
Sbjct: 418 WHQRLGHM 425
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 130 bits (327), Expect = 8e-31
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
Frame = -2
Query: 615 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 436
C C E GH+ ++CP K + ++ N+A +A F + +V T
Sbjct: 256 CAFCREKGHWKKDCPKLK-KKGKAPQDVNVAECKSDAESDFSL----------AVSRLTS 304
Query: 435 CENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 256
+EW++DS CT+HM+P + F ++E+ FV M N+ C GIG I L+ G
Sbjct: 305 HPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRI 364
Query: 255 LKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPV 76
LK+VR+VP+L +L+S LE GLE R +G++K+ G+L++ K V++NNLY G V
Sbjct: 365 LKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTV 424
Query: 75 ----SFAGNSVNVVQEDKTDLWHKRLG 7
+ A +S + + T LWH RLG
Sbjct: 425 VGTAAVATSSSSKKDAEATKLWHMRLG 451
>gb|KYP48283.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 431
Score = 127 bits (320), Expect = 9e-31
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 9/273 (3%)
Frame = -2
Query: 792 DLKVNKGGRQNSGEVMHV--RGRSQYRF-------DNQQKFDNHQNQNSNXXXXXXXXXX 640
+++ + G ++ V+H RGR+ R DN+ K NH++ N++
Sbjct: 162 EIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSRNHRSSNNSKTIK------ 215
Query: 639 XXXXXXXKCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIV 460
C+NCG+ GHY +C N NQ ++ +AN+ASTS D ++
Sbjct: 216 --------CWNCGQTGHYKNQCKNAPKNQ-EAKAEANIASTSGR-----------DDALI 255
Query: 459 NSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLK 280
S+ S E W++DS +FH + + F NY V + NE+ C + G G + +K
Sbjct: 256 CSLESK---EESWVLDSGASFHATSQREFFENYVPGNLGKVYLGNEQSCEIVGKGVVKIK 312
Query: 279 FDSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNL 100
G + LKNVRH+PDL NL+S L +G F KI KG++ I + K L
Sbjct: 313 L-KGSVWELKNVRHIPDLTKNLISVGQLASEGYTTTFHGDNWKISKGAMTIARGKKSGTL 371
Query: 99 YVCIGKPVSFAGNSVNVVQEDKTDLWHKRLGHM 1
Y G A + + + D +LW++RLGHM
Sbjct: 372 YKTAG-----AYHLIAIAANDNPNLWYQRLGHM 399
>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 780
Score = 129 bits (325), Expect = 1e-30
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)
Frame = -2
Query: 615 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSEN--AGDIFMVTGICDVPIVNSVHSS 442
C+ C +VGH+ + CP + +Q S D A++A+ S+ + D+ +VT +
Sbjct: 233 CFYCHKVGHFKKNCPERNRDQKSSADSADIAAISDGYESADVLVVT-------------T 279
Query: 441 TVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYA 262
+ + +W++DS C++HM P K+ F K + V + ++ C V GIG + LK
Sbjct: 280 SQTQKDWVMDSGCSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNRE 339
Query: 261 YTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA--VKRNNLYVCI 88
Y LK+VR+VPDL NL+S + + G + +G++KIL GSLVI K K N L+V
Sbjct: 340 YILKDVRYVPDLKRNLISISMFDSLGYATKTQHGVLKILNGSLVIAKGNKDKNNGLFVLD 399
Query: 87 GKPVSFAGNSVNVVQEDKTDLWHKRLGHM 1
G V A S+ DKT LWH RLGH+
Sbjct: 400 GSTV-MAHASIARNDIDKTKLWHLRLGHV 427