BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00001501
         (1795 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   837   0.0  
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   819   0.0  
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   815   0.0  
ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF,...   785   0.0  
emb|CDP06761.1| unnamed protein product [Coffea canephora]            633   0.0  
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   627   0.0  
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              622   0.0  
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   622   0.0  
ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF,...   621   0.0  
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     620   0.0  
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   619   0.0  
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   616   0.0  
ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF,...   610   0.0  
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   609   0.0  
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   609   0.0  
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   608   0.0  
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   607   0.0  
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   607   0.0  
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   606   0.0  
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   605   0.0  

>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  837 bits (2162), Expect = 0.0
 Identities = 430/536 (80%), Positives = 471/536 (87%), Gaps = 10/536 (1%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCLKADSTYQ--QTLDKRQ 175
            SVLLLH+QVTPA+TSLSTT L R  PTSVL QDQ NESR +LC K DS +Q  QTL  RQ
Sbjct: 27   SVLLLHDQVTPALTSLSTT-LARHSPTSVLTQDQHNESRSMLCSKEDSVFQLKQTLGMRQ 85

Query: 176  LLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSENLTG-- 349
             +MAP  SS +GN NVDPD+YVN+FQLQLLRRPELWYLW SLQ +EQ FS T E+++   
Sbjct: 86   AVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWPSLQTKEQLFSMTMESISNKN 145

Query: 350  -----VEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRST 514
                 VEAD VVALAREAFSACKEAA+I KDA LFGA LDD SSIR L  VP +R VRST
Sbjct: 146  EKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLDDSSSIRSLTGVPAQRTVRST 205

Query: 515  RLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAK 691
            RL+ERQ KRR VPKPKIE+QETNHRRKPES RK +EGFDPNDPLR+FL GPET QLLT+K
Sbjct: 206  RLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDPNDPLRLFLRGPETRQLLTSK 265

Query: 692  EESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKL 871
            EESELIVKIQELM+LQE++SRL+ QFSREPTLVEWA AAG SC  LQSQ+HCG+SSR KL
Sbjct: 266  EESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAGISCQALQSQIHCGDSSRQKL 325

Query: 872  IYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSI 1051
            I ANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLM+SVEKFKPQAGCRFATYAYWWIRQSI
Sbjct: 326  ICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFATYAYWWIRQSI 385

Query: 1052 RKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLY 1231
            RKALFQHSRTIRLPENVYSLLS+VYEAKK C+QQGNH PTKEDIAACAG+SVE LE+LLY
Sbjct: 386  RKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPTKEDIAACAGMSVEGLERLLY 445

Query: 1232 TARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKII 1411
            TAR+PLS+Q+PVW DQ+TT+QEITADTTIEVP+VG +KQ+MRQH RNLLSVL+PRERKII
Sbjct: 446  TARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQLMRQHIRNLLSVLSPRERKII 505

Query: 1412 RLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 1579
            RLRFGIE GEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCL S GL AYA+M+I
Sbjct: 506  RLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLGSHGLAAYANMII 561


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Erythranthe guttata] gi|604329105|gb|EYU34473.1|
            hypothetical protein MIMGU_mgv1a003862mg [Erythranthe
            guttata]
          Length = 559

 Score =  819 bits (2116), Expect = 0.0
 Identities = 415/535 (77%), Positives = 467/535 (87%), Gaps = 9/535 (1%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCLKADSTYQQTLDKRQLL 181
            SVLLLHEQVTPA+TSLST SL R   TSVLIQDQRNESRPLL LK D+T+QQT D+RQ++
Sbjct: 29   SVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQRNESRPLLSLKDDNTFQQTFDRRQMV 88

Query: 182  MAPGLSS-REGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFS--------STS 334
              P  SS  EGN  +DPD+Y ND QLQLLRRPELWYLW+SLQK+E  F         ST+
Sbjct: 89   TTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELWYLWSSLQKKEHPFPTTTPNSLPSTA 148

Query: 335  ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRST 514
            EN+TG EA+HV+ALAREAFSACKEAASIA+DARL+    D+ SS R L   PV+RIVRS 
Sbjct: 149  ENVTGAEANHVLALAREAFSACKEAASIAEDARLY----DNSSSTRSLVGSPVQRIVRSK 204

Query: 515  RLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKE 694
            R LERQ KRR PKP++E QE NHRRK E H+K +EG+DPNDPLR+FLWGPETTQLL+AKE
Sbjct: 205  RRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKE 264

Query: 695  ESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLI 874
            E++LI KIQELMKLQEVRSRL+TQFSREPTLVEWA A G S   LQ QV+CGN SR+KLI
Sbjct: 265  EADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREKLI 324

Query: 875  YANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIR 1054
            YANFR+VV+IAKQYQGRGL+LQDLLQ GSMGLMKSVEKFKP  GCRFATYAYWWIRQSIR
Sbjct: 325  YANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIR 384

Query: 1055 KALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYT 1234
            K+LFQHSRTIRLPENVY+LLSKVYEAKK+C++QGNH PTKEDIAA AGLSVE+L++LLYT
Sbjct: 385  KSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYT 444

Query: 1235 ARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIR 1414
            +RVPLSMQ+PVWMDQ+TT+QEITADT +E P+VGASKQIMRQHTRNLLSVLNPRERKIIR
Sbjct: 445  SRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIR 504

Query: 1415 LRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 1579
            LRFGIE GEQKSLS+IGAGFGLSKER+RQ+ESRALYKLKQCLSS GL AYA+ML+
Sbjct: 505  LRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Erythranthe guttata]
          Length = 558

 Score =  815 bits (2106), Expect = 0.0
 Identities = 414/535 (77%), Positives = 465/535 (86%), Gaps = 9/535 (1%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCLKADSTYQQTLDKRQLL 181
            SVLLLHEQVTPA+TSLST SL R   TSVLIQDQRNESRPLL LK D+T+QQT D+RQ++
Sbjct: 29   SVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQRNESRPLLSLKDDNTFQQTFDRRQMV 88

Query: 182  MAPGLSS-REGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFS--------STS 334
              P  SS  EGN  +DPD+Y ND QLQLLRRPELWYLW+SLQK+E  F         ST+
Sbjct: 89   TTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELWYLWSSLQKKEHPFPTTTPNSLPSTA 148

Query: 335  ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRST 514
            EN+TG EA+HV+ALAREAFSACKEAASIA+DARL+     D SS   L   PV+RIVRS 
Sbjct: 149  ENVTGAEANHVLALAREAFSACKEAASIAEDARLY-----DNSSSTSLVGSPVQRIVRSK 203

Query: 515  RLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKE 694
            R LERQ KRR PKP++E QE NHRRK E H+K +EG+DPNDPLR+FLWGPETTQLL+AKE
Sbjct: 204  RRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKE 263

Query: 695  ESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLI 874
            E++LI KIQELMKLQEVRSRL+TQFSREPTLVEWA A G S   LQ QV+CGN SR+KLI
Sbjct: 264  EADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREKLI 323

Query: 875  YANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIR 1054
            YANFR+VV+IAKQYQGRGL+LQDLLQ GSMGLMKSVEKFKP  GCRFATYAYWWIRQSIR
Sbjct: 324  YANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIR 383

Query: 1055 KALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYT 1234
            K+LFQHSRTIRLPENVY+LLSKVYEAKK+C++QGNH PTKEDIAA AGLSVE+L++LLYT
Sbjct: 384  KSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYT 443

Query: 1235 ARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIR 1414
            +RVPLSMQ+PVWMDQ+TT+QEITADT +E P+VGASKQIMRQHTRNLLSVLNPRERKIIR
Sbjct: 444  SRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIR 503

Query: 1415 LRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 1579
            LRFGIE GEQKSLS+IGAGFGLSKER+RQ+ESRALYKLKQCLSS GL AYA+ML+
Sbjct: 504  LRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQCLSSHGLSAYAEMLV 558


>ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Sesamum indicum] gi|747093636|ref|XP_011094633.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X2 [Sesamum indicum]
          Length = 496

 Score =  785 bits (2027), Expect = 0.0
 Identities = 399/496 (80%), Positives = 438/496 (88%), Gaps = 10/496 (2%)
 Frame = +2

Query: 122  LLCLKADSTYQ--QTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWA 295
            +LC K DS +Q  QTL  RQ +MAP  SS +GN NVDPD+YVN+FQLQLLRRPELWYLW 
Sbjct: 1    MLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWP 60

Query: 296  SLQKEEQSFSSTSENLTG-------VEADHVVALAREAFSACKEAASIAKDARLFGAHLD 454
            SLQ +EQ FS T E+++        VEAD VVALAREAFSACKEAA+I KDA LFGA LD
Sbjct: 61   SLQTKEQLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLD 120

Query: 455  DPSSIRGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDP 631
            D SSIR L  VP +R VRSTRL+ERQ KRR VPKPKIE+QETNHRRKPES RK +EGFDP
Sbjct: 121  DSSSIRSLTGVPAQRTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDP 180

Query: 632  NDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAG 811
            NDPLR+FL GPET QLLT+KEESELIVKIQELM+LQE++SRL+ QFSREPTLVEWA AAG
Sbjct: 181  NDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAG 240

Query: 812  TSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKF 991
             SC  LQSQ+HCG+SSR KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLM+SVEKF
Sbjct: 241  ISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKF 300

Query: 992  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPT 1171
            KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLS+VYEAKK C+QQGNH PT
Sbjct: 301  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPT 360

Query: 1172 KEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQI 1351
            KEDIAACAG+SVE LE+LLYTAR+PLS+Q+PVW DQ+TT+QEITADTTIEVP+VG +KQ+
Sbjct: 361  KEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQL 420

Query: 1352 MRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 1531
            MRQH RNLLSVL+PRERKIIRLRFGIE GEQKSLSEIGAGFGLSKERVRQLESRALYKLK
Sbjct: 421  MRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 480

Query: 1532 QCLSSQGLEAYADMLI 1579
            QCL S GL AYA+M+I
Sbjct: 481  QCLGSHGLAAYANMII 496


>emb|CDP06761.1| unnamed protein product [Coffea canephora]
          Length = 556

 Score =  633 bits (1633), Expect = 0.0
 Identities = 338/532 (63%), Positives = 416/532 (78%), Gaps = 6/532 (1%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 178
            SV +L E+V P +T +   ++     TS  I +Q  ES P L L K D   Q TLD+R +
Sbjct: 32   SVSVLREKVAPLLTRMPAVTVACYFATSTHISEQHEESGPSLRLMKYDRMSQATLDRRLI 91

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSENLTGVEA 358
              AP  S+ +G+   DPD   ++  ++LL+ P LWYL+ SL    QS  S  ++ T VEA
Sbjct: 92   DAAP--SANQGSDTDDPDHLKSNSHVKLLQLPGLWYLFQSLDTR-QSVPSIPDDFTDVEA 148

Query: 359  DHVVALAREAFSACKEAASIAKDARLFGAHLDD---PSSIRGLASVPV-RRIVRSTRLLE 526
            ++VVALA+ A SA +EAA +A++++LFGA +DD   PS +  L  +P+ ++ V STRLL+
Sbjct: 149  ENVVALAKNALSASREAALLAENSKLFGASVDDTLSPSLLYALTDIPLEKKTVHSTRLLQ 208

Query: 527  RQTK-RRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESE 703
            RQ K RRVPKPK+E+++T    +P   RK    FD  DPLR+FL GPET +LLT  EESE
Sbjct: 209  RQPKKRRVPKPKVEVEDTRPPVRPNLQRK---AFDLIDPLRVFLSGPET-KLLTVDEESE 264

Query: 704  LIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYAN 883
            LI KIQ+ MK +EV+SRL++QF+REPTLVEWAEAAG SC  LQ+Q+H GN SR+KLIYAN
Sbjct: 265  LIGKIQDWMKQEEVKSRLQSQFNREPTLVEWAEAAGLSCRALQTQLHSGNRSREKLIYAN 324

Query: 884  FRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAL 1063
             RMVVHIA+QY GRGLSLQDLLQEGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ+IRKA+
Sbjct: 325  HRMVVHIARQYMGRGLSLQDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAI 384

Query: 1064 FQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARV 1243
            FQHSRTIRLP+NVY LLSKV EAKK C+QQG H PTKE+IA+CAG++VE+LEKLL+TAR+
Sbjct: 385  FQHSRTIRLPDNVYGLLSKVKEAKKLCIQQGIHSPTKEEIASCAGITVEKLEKLLFTARM 444

Query: 1244 PLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRF 1423
            PLSMQQPVWMDQ+TT+QE+TADT IE  ++  SKQ+MR H RNLL +LNP+ERKIIRLRF
Sbjct: 445  PLSMQQPVWMDQDTTFQEVTADTAIEASDLSVSKQLMRIHIRNLLRILNPKERKIIRLRF 504

Query: 1424 GIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 1579
            GIE G+QKSLSEIGA FGLSKERVRQLE+RALYKLKQCL+SQGL AYADML+
Sbjct: 505  GIEDGKQKSLSEIGAVFGLSKERVRQLETRALYKLKQCLNSQGLNAYADMLL 556


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  627 bits (1616), Expect = 0.0
 Identities = 339/542 (62%), Positives = 407/542 (75%), Gaps = 17/542 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESR-PLLCLKADSTYQQTLDKRQL 178
            SVL+L+E V PA+TS+    L R  P SV+  +Q+ E+R  L  +K + T   T+D+R  
Sbjct: 33   SVLMLYEHVAPALTSVPHAYLVRHVPASVINPEQQFENRLQLHSVKEEKTSLATIDRR-- 90

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 334
            L+    S+ E N  VD ++ +N  Q+QLLR P L YL++S   +E        +S S   
Sbjct: 91   LVEAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLSDKG 150

Query: 335  ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------- 493
            E L   E  +VVALAR+A  A +EAA +A+D++L G + DD S    L S  +       
Sbjct: 151  EKLMNFEPHNVVALARKALLASREAALLAEDSKLLGTNFDD-SIFPNLLSTNLTDDKLKD 209

Query: 494  RRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPET 670
            +RI RSTRLLER++K+R  P  K ++QETN   +P+  R+ NE  D NDPLRMFLWGPET
Sbjct: 210  QRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLNDPLRMFLWGPET 269

Query: 671  TQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCG 850
             QLLT KEESELIVKIQ  MKLQEV+ RL+TQF REPTL+EWAEAAG +   LQSQ+  G
Sbjct: 270  RQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSG 329

Query: 851  NSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAY 1030
             SSRDKLI AN RMVVHIAKQYQGRGLSLQDLLQEGS+GLMKSVEKFKPQAGCRF TYAY
Sbjct: 330  KSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAY 389

Query: 1031 WWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVE 1210
            WWIRQ +RKA+FQHSRTIRLPENVY+LLSKV +AKK C+QQGNH+PT+EDIA+CAG+SVE
Sbjct: 390  WWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVE 449

Query: 1211 RLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLN 1390
            RL+ LL  AR PLSMQQ VW DQ+ T+QEITAD  IE PE+  SKQ+MR+H RNLL+VL+
Sbjct: 450  RLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLS 509

Query: 1391 PRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYAD 1570
            P+ERKIIRLRFGI  GE+KSLSEIGA FGLSKERVRQLESRALY+LKQ LSS GL+AY D
Sbjct: 510  PKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYND 569

Query: 1571 ML 1576
            +L
Sbjct: 570  LL 571


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  622 bits (1605), Expect = 0.0
 Identities = 330/541 (60%), Positives = 415/541 (76%), Gaps = 15/541 (2%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQL 178
            SVL+LH+QV PAV S+ TT + R  PTSVL+Q+QR+E RP    LK + T+Q TL+KRQ+
Sbjct: 26   SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 84

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTS-------- 334
             +   +S+ E N + D ++Y+ +F+ QLL +P LWY   S Q  E+S  S+S        
Sbjct: 85   EIV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141

Query: 335  -ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VR 496
             EN   V+   V+ALA++A SA K+A S+ ++A+L GA L+D PS   G  S P      
Sbjct: 142  IENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE 201

Query: 497  RIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQ 676
            + VRSTRLLER++K+R   PK+ + E +  R+ E  RK NEG+DP DPLR+FLWGPET +
Sbjct: 202  KTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 260

Query: 677  LLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNS 856
            LLTAKEESELIV+IQELM+L+EV+ RL++   REPT+VEWAEA G SC VLQSQ+H GN 
Sbjct: 261  LLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNR 320

Query: 857  SRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWW 1036
            SR KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWW
Sbjct: 321  SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 380

Query: 1037 IRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERL 1216
            IRQ++RKA+FQHSRTIRLPEN+YSLL KV EAK+  +Q+G+H PTKE+IA   G+++E+L
Sbjct: 381  IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 440

Query: 1217 EKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPR 1396
            ++LL   R+PLSMQQPVW DQ+TT+QE+TADT IE+P+V  +KQ+MRQH RNLL VL P+
Sbjct: 441  QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 500

Query: 1397 ERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 1576
            ER+IIRLRFGI  G  ++LSEIG  FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L
Sbjct: 501  ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 560

Query: 1577 I 1579
            +
Sbjct: 561  V 561


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  622 bits (1605), Expect = 0.0
 Identities = 330/541 (60%), Positives = 415/541 (76%), Gaps = 15/541 (2%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQL 178
            SVL+LH+QV PAV S+ TT + R  PTSVL+Q+QR+E RP    LK + T+Q TL+KRQ+
Sbjct: 32   SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 90

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTS-------- 334
             +   +S+ E N + D ++Y+ +F+ QLL +P LWY   S Q  E+S  S+S        
Sbjct: 91   EIV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 147

Query: 335  -ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VR 496
             EN   V+   V+ALA++A SA K+A S+ ++A+L GA L+D PS   G  S P      
Sbjct: 148  IENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE 207

Query: 497  RIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQ 676
            + VRSTRLLER++K+R   PK+ + E +  R+ E  RK NEG+DP DPLR+FLWGPET +
Sbjct: 208  KTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 266

Query: 677  LLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNS 856
            LLTAKEESELIV+IQELM+L+EV+ RL++   REPT+VEWAEA G SC VLQSQ+H GN 
Sbjct: 267  LLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNR 326

Query: 857  SRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWW 1036
            SR KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWW
Sbjct: 327  SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 386

Query: 1037 IRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERL 1216
            IRQ++RKA+FQHSRTIRLPEN+YSLL KV EAK+  +Q+G+H PTKE+IA   G+++E+L
Sbjct: 387  IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 446

Query: 1217 EKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPR 1396
            ++LL   R+PLSMQQPVW DQ+TT+QE+TADT IE+P+V  +KQ+MRQH RNLL VL P+
Sbjct: 447  QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 506

Query: 1397 ERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 1576
            ER+IIRLRFGI  G  ++LSEIG  FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L
Sbjct: 507  ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 566

Query: 1577 I 1579
            +
Sbjct: 567  V 567


>ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 544

 Score =  621 bits (1602), Expect = 0.0
 Identities = 335/542 (61%), Positives = 406/542 (74%), Gaps = 17/542 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESR-PLLCLKADSTYQQTLDKRQL 178
            +VL+L+E V P +TS+    L R  P SV+  +Q+ E+R  L  +K + T   T+D+R  
Sbjct: 5    AVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQQFENRLQLHTVKEEKTSLATIDRR-- 62

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 334
            L+    S+ E N  VD ++ +N  Q+QLLR P L YL++S   +E        +S S   
Sbjct: 63   LVEAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKGPLTLDTESLSDKG 122

Query: 335  ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------- 493
            E L   E + VVALAR+A  A +EAA +A+D++L   + DD S    L S  +       
Sbjct: 123  EKLMNFEPESVVALARKALLASREAALLAEDSKLLETNFDD-SIFPNLLSTNLTDDKLKD 181

Query: 494  RRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPET 670
            ++ VRSTR LER++KRR VP PK ++QETN   +P+  R+  E  D NDPLRMFLWGPET
Sbjct: 182  QKTVRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVKESIDLNDPLRMFLWGPET 241

Query: 671  TQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCG 850
             QLLT KEESELIVKIQ  MKLQEV+ RL+TQF REPTL+EWAEAAG +   LQSQ+  G
Sbjct: 242  KQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSG 301

Query: 851  NSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAY 1030
             SSRDKLI AN RMVVHIAKQYQGRGLSLQDLLQEGS+GLMKSVEKFKPQAGCRF TYAY
Sbjct: 302  KSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAY 361

Query: 1031 WWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVE 1210
            WWIRQ +RK +FQHSRTIRLPENVY+LLSKV +AKK C+QQGN +PT+EDIA+CAG+SVE
Sbjct: 362  WWIRQGVRKTIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTREDIASCAGMSVE 421

Query: 1211 RLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLN 1390
            RL+ LL  AR PLSMQQ VW DQ+TT+QEITAD+ IE PE+  SKQ+MR+H RNLL+VLN
Sbjct: 422  RLQSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLMRRHIRNLLNVLN 481

Query: 1391 PRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYAD 1570
            P+ERKIIRLRFGI  G++KSLSEIGA FGLSKERVRQLESRALYKLK+ LSS GL+AY+D
Sbjct: 482  PKERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKKNLSSHGLDAYSD 541

Query: 1571 ML 1576
            +L
Sbjct: 542  LL 543


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  620 bits (1600), Expect = 0.0
 Identities = 337/537 (62%), Positives = 407/537 (75%), Gaps = 21/537 (3%)
 Frame = +2

Query: 32   PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLC--LKADSTYQQTLDKRQLLMAPGLSSR 205
            PA TS+ TTSL R  PTSVL+++QR E R +LC  LK + T + TLD RQ+L   G    
Sbjct: 23   PAATSMPTTSLARNFPTSVLLREQREEYR-VLCHILKEERTSEATLDMRQMLN--GAVQE 79

Query: 206  EGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTS----------ENLTGVE 355
            E + N   D+ V DF+ +LL+ P LW ++ SLQ      SS +          E   G E
Sbjct: 80   EISDN--SDQLVQDFERRLLQWPGLWPIFPSLQTGGSPSSSLAMQPVTPTTDGEKSAGTE 137

Query: 356  ADHVVALAREAFSACKEAASIAKDARLFGAHLD-------DPSSIRGLASVPVR--RIVR 508
            +    ALA ++ SA K+AA +  +++L   + D       DP+S   L SVP+   RIVR
Sbjct: 138  SCLAAALAMKSLSASKQAAPLLNESKLARVNGDGLPAPSLDPAS---LVSVPLDKVRIVR 194

Query: 509  STRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTA 688
            STRLLER++K+RVPK  + + ET H R+ +  RK +EGFDPNDPLRMFLWGPET QLLTA
Sbjct: 195  STRLLERRSKKRVPK--VGVHETFHSRRTDIKRKSSEGFDPNDPLRMFLWGPETKQLLTA 252

Query: 689  KEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDK 868
            KEE ELI  IQ++MKL+EV+SRL +QF  EPTL+EWAEAAG SC VLQSQ+   N SR+K
Sbjct: 253  KEEFELIDHIQDMMKLEEVKSRLLSQFGHEPTLIEWAEAAGISCRVLQSQLRTANKSREK 312

Query: 869  LIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQS 1048
            LI AN RMVVHIAKQY G+GLS  DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ+
Sbjct: 313  LINANLRMVVHIAKQYLGKGLSFPDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQT 372

Query: 1049 IRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLL 1228
            +RKA+FQHSRTIRLPENVY+LL KV EAKKSC+Q+GNH PTKE++A   G++VE+LEKLL
Sbjct: 373  VRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHRPTKEELARRVGITVEKLEKLL 432

Query: 1229 YTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKI 1408
            YT R+PLSMQQPVW  Q+TT+QEI ADT IE+P++   KQ+MRQH RNLLS+L+P+ER+I
Sbjct: 433  YTTRMPLSMQQPVWAGQDTTFQEIIADTEIEIPDISVGKQMMRQHVRNLLSILSPKERRI 492

Query: 1409 IRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 1579
            IRLRFGIE G+QKSLSEIGA FGLSKERVRQLESRALY+LKQCLSSQGL AY D+L+
Sbjct: 493  IRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLESRALYRLKQCLSSQGLGAYTDLLV 549


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  619 bits (1596), Expect = 0.0
 Identities = 332/548 (60%), Positives = 417/548 (76%), Gaps = 22/548 (4%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 178
            SVL+LHEQ  PAVTS+  TS+ R  PTSVL+Q+QR+E +PLL  LK D T + TLD+ Q+
Sbjct: 32   SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEATLDRMQI 91

Query: 179  LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEE--------QSFS 325
                G S  E   ++D D++   VN  + QLL  P++  +++SLQ           +S +
Sbjct: 92   --ETGASVHE---DLDIDDFYPLVNGSKPQLLN-PDILDVFSSLQTGAKPSTPVTLESLT 145

Query: 326  STSENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIR-GLAS-----V 487
            + S     VE  +VVALA++A SA +EAAS+A+D++  GA  D+  S+  G  S     V
Sbjct: 146  TASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSLGLGYTSLDNWIV 205

Query: 488  PVRRIVRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFL 655
               + VRSTR+LER+ KR    +VPK K+   E+N     +  +K +EGF+PNDPLR+FL
Sbjct: 206  EEEKTVRSTRILERRRKRIKTRKVPKSKLIGHESNSFTSSDVPKKISEGFNPNDPLRLFL 265

Query: 656  WGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQS 835
            WGPET QLLTAKEE+ELI ++Q+L KL+EV+SRL+TQF REPTL+EWAEA G SC +L+S
Sbjct: 266  WGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKS 325

Query: 836  QVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRF 1015
            Q+  G SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRF
Sbjct: 326  QLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRF 385

Query: 1016 ATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACA 1195
            ATYAYWWIRQ++RKA+FQHSRTIRLPENVYSLL KV EAKKSC+Q+GNH P KE++A   
Sbjct: 386  ATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELAIRV 445

Query: 1196 GLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNL 1375
            G++VE+LEKLLY  R+PLSMQQPVW DQ+TT+QE+TADT +E+P+V  +KQ+MRQH R+L
Sbjct: 446  GITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHL 505

Query: 1376 LSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGL 1555
            LS+LN RER+IIRLR+GIE G+Q+SLSEIG  FGLSKERVRQLESRA  KL+Q L SQGL
Sbjct: 506  LSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGL 565

Query: 1556 EAYADMLI 1579
             AY  +L+
Sbjct: 566  GAYGPLLV 573


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  616 bits (1588), Expect = 0.0
 Identities = 330/544 (60%), Positives = 414/544 (76%), Gaps = 18/544 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 178
            SVL+LHEQ  PAVTS+  TS+ R  PTSVL+Q+QR+E +PLL  LK D T +  LD+ Q+
Sbjct: 32   SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQI 91

Query: 179  LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEE--------QSFS 325
                G S  E   ++D D++   VN  + QLL   ++  +++SLQ           +S +
Sbjct: 92   --ETGASVHE---DLDIDDFYPLVNSSKPQLLNH-DILDVFSSLQTGAKPSTPLTLESLT 145

Query: 326  STSENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRR 499
            + S     VE  +VVALA++A SA +EAAS+A+D++  GA  DD      LA+  V   +
Sbjct: 146  TASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDD-LGYTSLANWIVEEEK 204

Query: 500  IVRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 667
             VRSTR+LER+ KR    +VPK K+   E+N     +  +K +EGF+PNDPLR+FLWGPE
Sbjct: 205  TVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPE 264

Query: 668  TTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHC 847
            T QLLTAKEE+ELI ++Q+L KL+EV+SRL+TQF REPTL+EWAEA G SC +L+SQ+  
Sbjct: 265  TRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRS 324

Query: 848  GNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYA 1027
            G SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYA
Sbjct: 325  GTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYA 384

Query: 1028 YWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSV 1207
            YWWIRQ++RKA+FQHSRTIRLPENVYSLL KV EAKKSC+Q+GNH P KE++A   G++V
Sbjct: 385  YWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITV 444

Query: 1208 ERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVL 1387
            E+LEKLLY  R+PLSMQQPVW DQ+TT+QE+TADT +E+P+V  +KQ+MRQH R+LLS+L
Sbjct: 445  EKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSIL 504

Query: 1388 NPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 1567
            N RER+IIRLR+GIE G+Q+SLSEIG  FGLSKERVRQLESRA  KL+Q L SQGL AY 
Sbjct: 505  NLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYG 564

Query: 1568 DMLI 1579
             +L+
Sbjct: 565  PLLV 568


>ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nicotiana sylvestris]
          Length = 545

 Score =  610 bits (1572), Expect = 0.0
 Identities = 332/537 (61%), Positives = 398/537 (74%), Gaps = 21/537 (3%)
 Frame = +2

Query: 29   TPAVTSLSTTSLGRPPPTS----VLIQDQRNESR-PLLCLKADSTYQQTLDKRQLLMAPG 193
            +P  T    T L R  P+S    V+  +Q+ E+R  L  +K + T   T+D+R  L+   
Sbjct: 11   SPPTTFSHKTQLSRSSPSSISSSVINPEQQFENRLQLHSVKEEKTSLATIDRR--LVEAA 68

Query: 194  LSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSENLTG 349
             S+ E N  VD ++ +N  Q+QLLR P L YL++S   +E        +S S   E L  
Sbjct: 69   SSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLSDKGEKLMN 128

Query: 350  VEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV-------RRIVR 508
             E  +VVALAR+A  A +EAA +A+D++L G + DD S    L S  +       +RI R
Sbjct: 129  FEPHNVVALARKALLASREAALLAEDSKLLGTNFDD-SIFPNLLSTNLTDDKLKDQRIAR 187

Query: 509  STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 685
            STRLLER++K+R  P  K ++QETN   +P+  R+ NE  D NDPLRMFLWGPET QLLT
Sbjct: 188  STRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLNDPLRMFLWGPETRQLLT 247

Query: 686  AKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRD 865
             KEESELIVKIQ  MKLQEV+ RL+TQF REPTL+EWAEAAG +   LQSQ+  G SSRD
Sbjct: 248  VKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKSSRD 307

Query: 866  KLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ 1045
            KLI AN RMVVHIAKQYQGRGLSLQDLLQEGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ
Sbjct: 308  KLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQ 367

Query: 1046 SIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKL 1225
             +RKA+FQHSRTIRLPENVY+LLSKV +AKK C+QQGNH+PT+EDIA+CAG+SVERL+ L
Sbjct: 368  GVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERLQSL 427

Query: 1226 LYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERK 1405
            L  AR PLSMQQ VW DQ+ T+QEITAD  IE PE+  SKQ+MR+H RNLL+VL+P+ERK
Sbjct: 428  LSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPKERK 487

Query: 1406 IIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 1576
            IIRLRFGI  GE+KSLSEIGA FGLSKERVRQLESRALY+LKQ LSS GL+AY D+L
Sbjct: 488  IIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYNDLL 544


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  609 bits (1571), Expect = 0.0
 Identities = 329/542 (60%), Positives = 403/542 (74%), Gaps = 16/542 (2%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 178
            SVL+LHEQ TPAVTS+  T + R  PTSVL+Q+QR+E +PLL  LK + T Q TLD+ Q+
Sbjct: 35   SVLMLHEQATPAVTSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQI 94

Query: 179  LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEEQSFSS-TSENLT 346
                 L     N+++  D +   V D + QLL R  L  +++SLQ   +S +  T E +T
Sbjct: 95   EARASL-----NEDLKIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTRVKSSALLTMEPIT 149

Query: 347  GVEADHV-------VALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIV 505
               + H+       VALA++A SA KEA S A+D++  G  L   S       V   + V
Sbjct: 150  TASSKHMDIKPSDAVALAKKALSASKEAVSFAEDSKSMGDXLMTVSEGLDNWLVEDEKTV 209

Query: 506  RSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETT 673
            RS RLLER+ +R    RV K K+ I ETN     +  +K NEG +PNDPLR+FLWGPET 
Sbjct: 210  RSARLLERRRRRLKKKRVSKSKVLIHETNGPTSSDVRKKINEGLNPNDPLRLFLWGPETK 269

Query: 674  QLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGN 853
            QLLTAKEE+ELI ++Q+L KL+EV+SRL++QF REPTLVEWAEA G SC +L+SQ+  G 
Sbjct: 270  QLLTAKEEAELIAQVQDLFKLEEVKSRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGT 329

Query: 854  SSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYW 1033
            SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYW
Sbjct: 330  SSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYW 389

Query: 1034 WIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVER 1213
            WIRQ++RKA+FQHSRTIRLPENVY+LL KV EAKKSC+Q+GNH P KE++A   G++VE+
Sbjct: 390  WIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEK 449

Query: 1214 LEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNP 1393
            L+KLLY+ R+PLSMQQPVW DQ+TT+QEITADT  E+P V   KQ+MRQH R+LL +LN 
Sbjct: 450  LQKLLYSTRMPLSMQQPVWADQDTTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNL 509

Query: 1394 RERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADM 1573
            RER+IIRLRFGIE G+Q+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL AY  +
Sbjct: 510  RERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGPL 569

Query: 1574 LI 1579
            L+
Sbjct: 570  LV 571


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  609 bits (1570), Expect = 0.0
 Identities = 325/545 (59%), Positives = 410/545 (75%), Gaps = 19/545 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 178
            SV LLHEQ  P V S+ TTS+ R  P SVL+Q+QR++ RP L  ++ D T Q  LD+R+L
Sbjct: 26   SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKL 85

Query: 179  LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 334
                 +   E  K+  PD Y   F+ QLL  P LWYL  SL K E        QS ++ +
Sbjct: 86   --EDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGT 143

Query: 335  ENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSI------RGLAS-VPV 493
                 V     + LA++A  A K+AAS+AKD  LFGA  D   S       R LA+ +P+
Sbjct: 144  VKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGA--DSHESFLPDLEPRNLANKIPL 201

Query: 494  RR--IVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGP 664
            R    VRS RLLERQ+KRR +P+PK+ + E +  RK + H+K +EGFD NDPLR+FLWGP
Sbjct: 202  REEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGP 261

Query: 665  ETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVH 844
            ET QLLT KEESEL V +QEL++L+EV+ RL++QF REPTLVEWAEA G +C  LQS +H
Sbjct: 262  ETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILH 321

Query: 845  CGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATY 1024
             GNSSR+K+IYANFR+VVH+AK YQG+GL+LQDLLQEGSMGLMKS+EKFKPQAGCRFATY
Sbjct: 322  SGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATY 381

Query: 1025 AYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLS 1204
            AYWWIRQ+IRKA+FQ+SRTIRLPENVYSLLS+V +AKK  +Q+G H+PT E++A   G++
Sbjct: 382  AYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG-HHPTNEELAKRVGIT 440

Query: 1205 VERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSV 1384
            VE+LE+L  + R+PLS+QQPVW DQ+TT+QEITADT +E P++  +KQ+MR+H RNL+S+
Sbjct: 441  VEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISI 500

Query: 1385 LNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAY 1564
            L P+ER+IIR+R+GIE  E KSL EIG+ FGLSKERVRQLESRAL+KLKQCLSSQGL AY
Sbjct: 501  LPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAY 560

Query: 1565 ADMLI 1579
            AD+L+
Sbjct: 561  ADLLV 565


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  608 bits (1569), Expect = 0.0
 Identities = 321/545 (58%), Positives = 411/545 (75%), Gaps = 19/545 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL---KADSTYQQTLDKR 172
            SVL+ HEQ  PA TS+  TS+ R  PTSVL+Q+QR++ RPL  L   K D  Y    DK+
Sbjct: 31   SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90

Query: 173  QLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSS 328
            Q+     L+    + N         F+ +LL+ P+L  L + L+ EE        QS ++
Sbjct: 91   QIENGASLNEENASNNFGQ----LGFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146

Query: 329  TSENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDP-SSIRGLAS---VPVR 496
             ++ +  VE  ++VALA++A SA K+AAS+++D +L    LDD  S+  G A+   +PV 
Sbjct: 147  DTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKL---DLDDSLSNSLGSANSCTLPVE 203

Query: 497  R----IVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGP 664
            +     VRSTR LERQ+KRR  +PK+ I+ET   R+ +  RK +EGFDPNDPLR+FLWGP
Sbjct: 204  KEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGP 263

Query: 665  ETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVH 844
            ET QLLTAKEESEL  ++Q LM+L++V+S+L++QF REPTLVEWAEA G  C  LQ+++H
Sbjct: 264  ETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELH 323

Query: 845  CGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATY 1024
             GNSSRDKLIYAN RMVVHIAKQYQ RGLSLQDLLQEGSMGLMKSVE+FKPQ GCRFATY
Sbjct: 324  SGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATY 383

Query: 1025 AYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLS 1204
            AYWWIRQ+IRK++ QHSRT+RLPENV++LLSKV +AKKS +++GNH P+KE++A   G++
Sbjct: 384  AYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGIT 443

Query: 1205 VERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSV 1384
            VE+L+KLL+T R+PLSMQQ VW+DQ+ T+QE+T DT IE+P+V  +KQ+MRQH RNLLSV
Sbjct: 444  VEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSV 503

Query: 1385 LNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAY 1564
            L+PRER II+LRFGIE  ++ SLSEIG  FGLSKERVRQLESRALYKLKQCL+  GL AY
Sbjct: 504  LSPRERTIIKLRFGIEESKENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAY 563

Query: 1565 ADMLI 1579
             D+L+
Sbjct: 564  VDLLV 568


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  607 bits (1566), Expect = 0.0
 Identities = 324/544 (59%), Positives = 409/544 (75%), Gaps = 19/544 (3%)
 Frame = +2

Query: 5    VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLL 181
            V LLHEQ  P V S+ TTS+ R  P SVL+Q+QR++ RP L  ++ D T Q  LD+R+L 
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKL- 60

Query: 182  MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSE 337
                +   E  K+  PD Y   F+ QLL  P LWYL  SL K E        QS ++ + 
Sbjct: 61   -EDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTV 119

Query: 338  NLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSI------RGLAS-VPVR 496
                V     + LA++A  A K+AAS+AKD  LFGA  D   S       R LA+ +P+R
Sbjct: 120  KNVDVRPCDALELAKKAVLASKQAASLAKDYELFGA--DSHESFLPDLEPRNLANKIPLR 177

Query: 497  R--IVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 667
                VRS RLLERQ+KRR +P+PK+ + E +  RK + H+K +EGFD NDPLR+FLWGPE
Sbjct: 178  EEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPE 237

Query: 668  TTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHC 847
            T QLLT KEESEL V +QEL++L+EV+ RL++QF REPTLVEWAEA G +C  LQS +H 
Sbjct: 238  TKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHS 297

Query: 848  GNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYA 1027
            GNSSR+K+IYANFR+VVH+AK YQG+GL+LQDLLQEGSMGLMKS+EKFKPQAGCRFATYA
Sbjct: 298  GNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYA 357

Query: 1028 YWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSV 1207
            YWWIRQ+IRKA+FQ+SRTIRLPENVYSLLS+V +AKK  +Q+G H+PT E++A   G++V
Sbjct: 358  YWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG-HHPTNEELAKRVGITV 416

Query: 1208 ERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVL 1387
            E+LE+L  + R+PLS+QQPVW DQ+TT+QEITADT +E P++  +KQ+MR+H RNL+S+L
Sbjct: 417  EKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISIL 476

Query: 1388 NPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 1567
             P+ER+IIR+R+GIE  E KSL EIG+ FGLSKERVRQLESRAL+KLKQCLSSQGL AYA
Sbjct: 477  PPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYA 536

Query: 1568 DMLI 1579
            D+L+
Sbjct: 537  DLLV 540


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  607 bits (1566), Expect = 0.0
 Identities = 324/544 (59%), Positives = 409/544 (75%), Gaps = 19/544 (3%)
 Frame = +2

Query: 5    VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLL 181
            V LLHEQ  P V S+ TTS+ R  P SVL+Q+QR++ RP L  ++ D T Q  LD+R+L 
Sbjct: 30   VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKL- 88

Query: 182  MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSE 337
                +   E  K+  PD Y   F+ QLL  P LWYL  SL K E        QS ++ + 
Sbjct: 89   -EDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTV 147

Query: 338  NLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSI------RGLAS-VPVR 496
                V     + LA++A  A K+AAS+AKD  LFGA  D   S       R LA+ +P+R
Sbjct: 148  KNVDVRPCDALELAKKAVLASKQAASLAKDYELFGA--DSHESFLPDLEPRNLANKIPLR 205

Query: 497  R--IVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 667
                VRS RLLERQ+KRR +P+PK+ + E +  RK + H+K +EGFD NDPLR+FLWGPE
Sbjct: 206  EEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPE 265

Query: 668  TTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHC 847
            T QLLT KEESEL V +QEL++L+EV+ RL++QF REPTLVEWAEA G +C  LQS +H 
Sbjct: 266  TKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHS 325

Query: 848  GNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYA 1027
            GNSSR+K+IYANFR+VVH+AK YQG+GL+LQDLLQEGSMGLMKS+EKFKPQAGCRFATYA
Sbjct: 326  GNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYA 385

Query: 1028 YWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSV 1207
            YWWIRQ+IRKA+FQ+SRTIRLPENVYSLLS+V +AKK  +Q+G H+PT E++A   G++V
Sbjct: 386  YWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG-HHPTNEELAKRVGITV 444

Query: 1208 ERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVL 1387
            E+LE+L  + R+PLS+QQPVW DQ+TT+QEITADT +E P++  +KQ+MR+H RNL+S+L
Sbjct: 445  EKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISIL 504

Query: 1388 NPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 1567
             P+ER+IIR+R+GIE  E KSL EIG+ FGLSKERVRQLESRAL+KLKQCLSSQGL AYA
Sbjct: 505  PPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYA 564

Query: 1568 DMLI 1579
            D+L+
Sbjct: 565  DLLV 568


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  606 bits (1563), Expect = 0.0
 Identities = 331/544 (60%), Positives = 405/544 (74%), Gaps = 18/544 (3%)
 Frame = +2

Query: 2    SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 178
            SVL+LHEQ T AV S+  T + R  PTSVL+Q+QR+E +PLL  LK + T Q TLD+ Q+
Sbjct: 36   SVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQI 95

Query: 179  LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEEQ-SFSSTSENLT 346
                 L     N+++D D +   V D + QLL R  L  +++SLQ   + S   T E +T
Sbjct: 96   ETKASL-----NEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVEPIT 150

Query: 347  GVEADHV-------VALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRR 499
               + H+       VALA++A SA KEA S A  ++  G   DD  SI GL +  V   +
Sbjct: 151  TASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSI-GLDNWLVEDEK 209

Query: 500  IVRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 667
             VRSTRLLER+ KR    RV K K+ I ETN     +  RK NEGF+ NDPLR+FLWGPE
Sbjct: 210  TVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPE 269

Query: 668  TTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHC 847
            T QLLTA+EE+ELI ++Q+L KL+EV++RL++QF REPTLVEWAEA G SC +L+SQ+  
Sbjct: 270  TKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQLRS 329

Query: 848  GNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYA 1027
            G SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYA
Sbjct: 330  GTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYA 389

Query: 1028 YWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSV 1207
            YWWIRQ++RKA+FQHSRTIRLPENVY+LL KV EAKKSC+Q+GNH P KE++A   G++V
Sbjct: 390  YWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITV 449

Query: 1208 ERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVL 1387
            E+L+KLLY+ R+PLSMQQPVW DQ++T+QEITADT  E+P V   KQ+MRQH R+LL +L
Sbjct: 450  EKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGIL 509

Query: 1388 NPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 1567
            N RER+IIRLRFGIE G+Q+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL AY 
Sbjct: 510  NLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYG 569

Query: 1568 DMLI 1579
             +L+
Sbjct: 570  PLLV 573


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  605 bits (1559), Expect = 0.0
 Identities = 330/543 (60%), Positives = 404/543 (74%), Gaps = 18/543 (3%)
 Frame = +2

Query: 5    VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLL 181
            VL+LHEQ T AV S+  T + R  PTSVL+Q+QR+E +PLL  LK + T Q TLD+ Q+ 
Sbjct: 74   VLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIE 133

Query: 182  MAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEEQ-SFSSTSENLTG 349
                L     N+++D D +   V D + QLL R  L  +++SLQ   + S   T E +T 
Sbjct: 134  TKASL-----NEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVEPITT 188

Query: 350  VEADHV-------VALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRRI 502
              + H+       VALA++A SA KEA S A  ++  G   DD  SI GL +  V   + 
Sbjct: 189  ASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSI-GLDNWLVEDEKT 247

Query: 503  VRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPET 670
            VRSTRLLER+ KR    RV K K+ I ETN     +  RK NEGF+ NDPLR+FLWGPET
Sbjct: 248  VRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPET 307

Query: 671  TQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCG 850
             QLLTA+EE+ELI ++Q+L KL+EV++RL++QF REPTLVEWAEA G SC +L+SQ+  G
Sbjct: 308  KQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQLRSG 367

Query: 851  NSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAY 1030
             SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAY
Sbjct: 368  TSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAY 427

Query: 1031 WWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVE 1210
            WWIRQ++RKA+FQHSRTIRLPENVY+LL KV EAKKSC+Q+GNH P KE++A   G++VE
Sbjct: 428  WWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVE 487

Query: 1211 RLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLN 1390
            +L+KLLY+ R+PLSMQQPVW DQ++T+QEITADT  E+P V   KQ+MRQH R+LL +LN
Sbjct: 488  KLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILN 547

Query: 1391 PRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYAD 1570
             RER+IIRLRFGIE G+Q+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL AY  
Sbjct: 548  LRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGP 607

Query: 1571 MLI 1579
            +L+
Sbjct: 608  LLV 610