BLASTX nr result
ID: Rehmannia28_contig00000853
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000853
(1229 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 492 e-168
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 361 e-115
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 347 e-113
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 348 e-111
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group] 350 e-110
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo... 347 e-109
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 351 e-107
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 348 e-105
gb|KYP76436.1| Retrovirus-related Pol polyprotein from transposo... 336 e-105
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 342 e-105
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo... 337 e-104
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 344 e-104
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 342 e-104
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 344 e-104
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 343 e-104
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 344 e-104
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 342 e-104
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 342 e-104
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 338 e-103
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 341 e-103
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 492 bits (1266), Expect = e-168
Identities = 240/360 (66%), Positives = 283/360 (78%)
Frame = -1
Query: 1085 QWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKN 906
+WL+DSAC++HMTP R +FS+Y ++ N V +A+ + GIG VCLKF SG VLTLKN
Sbjct: 16 EWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTMIVVNGIGTVCLKFVSGSVLTLKN 75
Query: 905 VRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHES 726
VRHVP L +NLISCA LEDDG G WG G M I+KG+ +FKA + N+YVC+AES
Sbjct: 76 VRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRMGNMYVCSAESSA-- 133
Query: 725 YVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRV 546
S+N VQ+D ++LWHK LGHMS K L ILHKN FG DK+S + CDSC+LGKQ+ V
Sbjct: 134 ----SMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSSVTLCDSCILGKQTHV 189
Query: 545 KFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSE 366
FP P PN + C++ILEY+HADVWGP S PT GGNRYFLSIIDD+SRKV+VFL+K KS+
Sbjct: 190 LFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRKVFVFLLKQKSD 249
Query: 365 VFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 186
VF+KFK WK LIENQTGKRIKTLRTDNG+EFCN FDNLCA GIRRHK+V +TPQQNGV
Sbjct: 250 VFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGIRRHKSVVHTPQQNGV 309
Query: 185 AERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEID 6
AERMNRTLLERVRSML SSGL K FWGEA+ TA YLINRSPS+PL G PESV+ GK++D
Sbjct: 310 AERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDLPESVWCGKKVD 369
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 361 bits (926), Expect = e-115
Identities = 180/369 (48%), Positives = 239/369 (64%), Gaps = 4/369 (1%)
Frame = -1
Query: 1097 KSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVL 918
+S +W++DS CTFHM P+++LF+ + V +G VLM N+ QC I GIG + +K G +
Sbjct: 282 RSKTEWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIK 341
Query: 917 TLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAES 738
TL NVR +PDL NLIS LE G + GV+K+ KG +V+ KA + +LY+
Sbjct: 342 TLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSI 401
Query: 737 EHESYVHNSVNSVQSDK--TDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVL 564
S +V+S SDK T LWH RLGHMS KG+ +L K G G + + FC+ CV
Sbjct: 402 VTGSA---AVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVF 458
Query: 563 GKQSRVKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFL 384
GKQ RV F + + L+Y+H+D+WGP+ P+ GG RY ++IIDDFSRKVWV+
Sbjct: 459 GKQKRVSFSTATHRTK----GTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYF 514
Query: 383 MKNKSEVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYT 204
+++K+E F FK WK L+E QTGK++K LRTDNGLEFC F+ CA GI RHKT+P
Sbjct: 515 LRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGK 574
Query: 203 PQQNGVAERMNRTLLERVRSMLASSGL--SKRFWGEAVHTAAYLINRSPSVPLKGKCPES 30
PQQNGVAER+NRT+LER R ML+++GL + W EA TA YLINRSP L K PE
Sbjct: 575 PQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEE 634
Query: 29 VFSGKEIDF 3
++SG ID+
Sbjct: 635 IWSGNPIDY 643
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 448
Score = 347 bits (890), Expect = e-113
Identities = 171/365 (46%), Positives = 230/365 (63%)
Frame = -1
Query: 1097 KSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVL 918
+S QW++DS C++HM P R+ F Y+E + G V M N+ C VGIG + L+ G +
Sbjct: 48 QSADQWVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIR 107
Query: 917 TLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAES 738
TL VRHVPDL NLIS L+ G + GVM+I +G+ V+ + KK NLY+ +
Sbjct: 108 TLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKGNLYMLQGST 167
Query: 737 EHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGK 558
S + D T LWH RLGHMS +G+ IL + G + + FC+ CV GK
Sbjct: 168 SSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELRFCEHCVFGK 227
Query: 557 QSRVKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMK 378
Q R+KFP + Q L+Y+H+D WGP+ P+ GG RYFLSIIDD+SR W+F+ K
Sbjct: 228 QHRIKFPKA----QHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITK 283
Query: 377 NKSEVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQ 198
+K++ F+ FK WK+L+E Q KR+K LRTDNGLEFC+ F++ C GI R TV TPQ
Sbjct: 284 HKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKAEGIARQYTVRNTPQ 343
Query: 197 QNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSG 18
QNGVAERMN+TLLER R +L+++GLS+ FW EA+ T YLINRSPS + K P V+S
Sbjct: 344 QNGVAERMNKTLLERARCLLSNAGLSRSFWAEAISTTCYLINRSPSTVIDCKTPIEVWSN 403
Query: 17 KEIDF 3
K ++
Sbjct: 404 KPANY 408
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 609
Score = 348 bits (892), Expect = e-111
Identities = 172/361 (47%), Positives = 232/361 (64%)
Frame = -1
Query: 1085 QWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKN 906
QW++DS C++HM P R+ F Y++ G V M N+ C +GIG + +K G + TL
Sbjct: 213 QWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTE 272
Query: 905 VRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHES 726
VRHVPDL NLIS L G + GVM+I KG+ V+ + KK NLY+ + S
Sbjct: 273 VRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLIS 332
Query: 725 YVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRV 546
+ + D T LWH RLGHMS +G+ +L K G + + FC+ CV+GK R+
Sbjct: 333 ESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEHCVVGKHHRI 392
Query: 545 KFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSE 366
KFP + Q L+Y+H+D WGP+ P+ GG RYFLSIIDD+S W+F+MK+K++
Sbjct: 393 KFPKA----QHTTKSTLDYVHSDCWGPSRVPSLGGGRYFLSIIDDYSGMTWIFIMKHKNQ 448
Query: 365 VFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 186
F+ FK WK+L+ENQTGKRIK LRTDNGLEFC+ F++ C + GI R TV TPQQNGV
Sbjct: 449 AFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFNDYCKKEGIVRQYTVRNTPQQNGV 508
Query: 185 AERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEID 6
AERMNRTLLE+ R +L+++GL+K FW EAV+TA YL+N SPS + K P V+S K +
Sbjct: 509 AERMNRTLLEKRRYLLSNAGLTKSFWAEAVNTACYLVNGSPSTIIGCKTPTEVWSTKPAN 568
Query: 5 F 3
+
Sbjct: 569 Y 569
>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
Length = 778
Score = 350 bits (898), Expect = e-110
Identities = 172/409 (42%), Positives = 255/409 (62%), Gaps = 1/409 (0%)
Frame = -1
Query: 1226 GKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMT 1047
G Q+ + +A + + S ++ + Y C +++ QW++D+ACT+HM
Sbjct: 225 GDQSPEAGKKEEEGKAAVVTDEKSDAELLVAYVGC-------AQTSDQWILDTACTYHMC 277
Query: 1046 PFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLIS 867
P R+ F+ Y+ V G+VLM ++ C + GIG V +K G + TL +VRH+P+L +LIS
Sbjct: 278 PNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLIS 337
Query: 866 CAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSD 690
L+ G + G G++K+ KG+LV+ KA+ K NLY + + S + SD
Sbjct: 338 FCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD 397
Query: 689 KTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTM 510
T+LWH RLGHMS GL L K G + + FC+ C+ GK RVKF S +
Sbjct: 398 ATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE-- 455
Query: 509 CSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLI 330
IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++
Sbjct: 456 --GILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMV 513
Query: 329 ENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERV 150
E QT +++K LRTDNG+EFC+ +F + C GI RH T+P+TPQQNGVAERMNRT++ +
Sbjct: 514 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTIISKA 573
Query: 149 RSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
R ML+++GL K+FW EAV TA YLINRSPS + K P V+SG +++
Sbjct: 574 RCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPVNY 622
>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 780
Score = 347 bits (889), Expect = e-109
Identities = 185/413 (44%), Positives = 252/413 (61%), Gaps = 4/413 (0%)
Frame = -1
Query: 1229 KGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHM 1050
K +N + S D A++A+ S Y+ D + + ++ W++DS C++HM
Sbjct: 244 KNCPERNRDQKSSADSADIAAISDG-------YESADVLVVTTSQTQKDWVMDSGCSYHM 296
Query: 1049 TPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLI 870
P ++ F K G+VL+ ++ C + GIG V LK LK+VR+VPDL NLI
Sbjct: 297 CPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDLKRNLI 356
Query: 869 SCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRN--LYVCNAES--EHESYVHNSVNS 702
S + + G + GV+KIL G+LVI K K +N L+V + + H S N +
Sbjct: 357 SISMFDSLGYATKTQHGVLKILNGSLVIAKGNKDKNNGLFVLDGSTVMAHASIARNDI-- 414
Query: 701 VQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFP 522
DKT LWH RLGH+S +GL L K DKL + FC+ CVLGK RVKF
Sbjct: 415 ---DKTKLWHLRLGHVSERGLIELEKQNLLKGDKLDKLEFCEHCVLGKSHRVKFGTGIH- 470
Query: 521 NQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNW 342
+ S EY+HAD+WGP+ T GG YFL+IIDDF+R+VW++++K+K+E ++KF++W
Sbjct: 471 ---VSSRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRRVWLYVLKDKTETYKKFRDW 527
Query: 341 KMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTL 162
LI+NQ ++K LRTDNGLEF + F C GI+RH+TVP+TPQQNG+AERMNRT+
Sbjct: 528 YTLIQNQLETKLKVLRTDNGLEFLSEQFAEFCRNQGIKRHRTVPHTPQQNGLAERMNRTI 587
Query: 161 LERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
LERVR ML SGLSK+FWGEA TAAYLINR PS L K P + GK +D+
Sbjct: 588 LERVRCMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKTPMEAWHGKPVDY 640
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 351 bits (901), Expect = e-107
Identities = 182/408 (44%), Positives = 256/408 (62%), Gaps = 4/408 (0%)
Frame = -1
Query: 1214 QNFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPF 1041
QN +S+ +A++ +++ +GD +V+ C S +W++D+AC+FH+
Sbjct: 253 QNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGC-------VASHDEWILDTACSFHIYIN 305
Query: 1040 RNLFSNYKEVVNGSVL-MANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISC 864
R+ FS+YK V NG V+ M N+ IVGIG V +K G TLK+VRH+P + NLIS
Sbjct: 306 RDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISL 365
Query: 863 AALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDK 687
+ L+ +G + GV+K+ KG+LV + NLYV + H S +V + +K
Sbjct: 366 STLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNK 425
Query: 686 TDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMC 507
T+LWH RLGHMS G+ L K M FC+ CV GK RVKF S +
Sbjct: 426 TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTK--- 482
Query: 506 SDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIE 327
IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F FK WK++IE
Sbjct: 483 -GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIE 541
Query: 326 NQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVR 147
QT K +K LRTDN EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R
Sbjct: 542 RQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKAR 601
Query: 146 SMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
ML+++ ++KRFW EA +TA YLINRSPS+PL K P ++SG D+
Sbjct: 602 CMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADY 649
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 348 bits (893), Expect = e-105
Identities = 171/403 (42%), Positives = 256/403 (63%), Gaps = 1/403 (0%)
Frame = -1
Query: 1223 KQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTP 1044
++N++ N ++++A ++ + MV D V+ +W++D+ C+FHMTP
Sbjct: 239 ERNKSKQQGSDNGESSLAKSTEAFNPA-MVLLATDETLVVTDSIANEWVLDTGCSFHMTP 297
Query: 1043 FRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISC 864
++ F ++KE+ +G V M N+ + GIG + ++ G + L +VR++P++ NLIS
Sbjct: 298 RKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISL 357
Query: 863 AALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKT 684
LED G + G++KI+KG I K +K+ LY+ + +E E H+S D+T
Sbjct: 358 GTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTE-EGESHSSAEV--KDET 414
Query: 683 DLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCS 504
LWH RLGHMS KG+EIL K GC ++ + + FC+ CV GKQ RV F P Q +
Sbjct: 415 ALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA----PAQHVTK 470
Query: 503 DILEYLHADVWGPASEPTQGGN-RYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIE 327
+ L Y+H+D+WG P GN +YF+S +DD+SRKVW++ ++ K E FEKF WK ++E
Sbjct: 471 EKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVE 530
Query: 326 NQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVR 147
NQ+ +++K LRTDNGLE+CN+ F+ C E GI RHKT YTPQQNG+AER+NRT++++VR
Sbjct: 531 NQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVR 590
Query: 146 SMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSG 18
SML+ SG+ K+FW EA TA YLINRSPS + PE ++G
Sbjct: 591 SMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTG 633
>gb|KYP76436.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 760
Score = 336 bits (861), Expect = e-105
Identities = 187/393 (47%), Positives = 239/393 (60%)
Frame = -1
Query: 1187 DQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVV 1008
D+AN+A+TSG GD +C N W+IDS +FH T + LF NY
Sbjct: 216 DEANVATTSGG-GDAL----ICSLENKEE-----SWVIDSGASFHATSQKELFENYVSGN 265
Query: 1007 NGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLEGRW 828
G V + NE+ C IVG G V +K + G V LKNVRH+PDL NLIS L DG +
Sbjct: 266 LGKVYLGNEQSCEIVGKGVVKIKLN-GSVWELKNVRHIPDLTKNLISVGQLASDGYTTIF 324
Query: 827 GKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLGHMSA 648
KI KG + I + +K LY E+ H + +D +LWH+RLGHMS
Sbjct: 325 QGEQWKISKGAMTIARGKKSGTLYK-TTEACH------LITVAANDNPNLWHQRLGHMSE 377
Query: 647 KGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHADVWG 468
KG++I+H G + + C+ C+ GKQ RV F +T + LE +H+DVWG
Sbjct: 378 KGMKIMHSKGKLPGLQSVEIEMCEDCIFGKQKRVSFQKG---GRTPKKERLELVHSDVWG 434
Query: 467 PASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTLRTD 288
P + + G +YF++ IDD SRKVWV+ +K+KSEVFE FK WK ++EN+TG +IK LRTD
Sbjct: 435 PTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRTD 494
Query: 287 NGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFW 108
NG E+ + F C E GIR +TVP TPQQNGVAERMNRTL ER RSM SGL K+FW
Sbjct: 495 NGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRMQSGLPKQFW 554
Query: 107 GEAVHTAAYLINRSPSVPLKGKCPESVFSGKEI 9
E V+TAAYLINR PSVPL+ K PE V+SGKE+
Sbjct: 555 AETVNTAAYLINRGPSVPLEHKIPEEVWSGKEV 587
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 342 bits (876), Expect = e-105
Identities = 168/399 (42%), Positives = 248/399 (62%), Gaps = 1/399 (0%)
Frame = -1
Query: 1196 QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYK 1017
+ +A + + S ++ + Y C +++ QW++D+ACT+HM P R+ F+ Y+
Sbjct: 86 EDEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 138
Query: 1016 EVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLE 837
V G+VLM ++ C + GIG V +K G + TL +VRH+P+L +LIS L+ G +
Sbjct: 139 VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYK 198
Query: 836 GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 660
G G++K+ KG+LV+ KA+ K NLY + + S + SD T+LWH RLG
Sbjct: 199 YSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 258
Query: 659 HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 480
HMS GL L G + + FC+ C+ GK RVKF S + IL+Y+H+
Sbjct: 259 HMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 314
Query: 479 DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 300
D+WGPA + + GG RY ++I++D+SRKVW + +K+K + F FK WK ++E QT +++K
Sbjct: 315 DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 374
Query: 299 LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 120
LRTDNG+EFC+ +F + C GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL
Sbjct: 375 LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 434
Query: 119 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
K+FW EAV TA YLINRSP + K P V+SG ++
Sbjct: 435 KQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANY 473
>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 864
Score = 337 bits (863), Expect = e-104
Identities = 187/393 (47%), Positives = 239/393 (60%)
Frame = -1
Query: 1187 DQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVV 1008
D+AN+A+TSG GD +C N W+IDS +FH T + LF NY
Sbjct: 239 DEANVATTSGG-GDAL----ICSLENKEE-----SWVIDSGASFHATSQKELFENYVSGN 288
Query: 1007 NGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLEGRW 828
G V + NE+ C IVG G V +K + G V LKNVRH+PDL NLIS L DG +
Sbjct: 289 LGKVYLGNEQSCEIVGKGVVKIKLN-GSVWELKNVRHIPDLTKNLISVGQLASDGYTTIF 347
Query: 827 GKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLGHMSA 648
KI KG + I + +K LY E+ H + +D +LWH+RLGHMS
Sbjct: 348 QGEQWKISKGAMTIARGKKSGTLYK-TTEACH------LITVAANDNPNLWHQRLGHMSE 400
Query: 647 KGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHADVWG 468
KG++I+H G + + C+ C+ GKQ RV F +T + LE +H+DVWG
Sbjct: 401 KGMKIMHSKGKLPGLQSMEIEMCEDCIFGKQKRVSFQKG---GRTPKKERLELVHSDVWG 457
Query: 467 PASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTLRTD 288
P + + G +YF++ IDD SRKVWV+ +K+KSEVFE FK WK ++EN+TG +IK LRTD
Sbjct: 458 PTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRTD 517
Query: 287 NGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFW 108
NG E+ + F C E GIR +TVP TPQQNGVAERMNRTL ER RSM SGL K+FW
Sbjct: 518 NGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRVQSGLPKQFW 577
Query: 107 GEAVHTAAYLINRSPSVPLKGKCPESVFSGKEI 9
E V+TAAYLINR PSVPL+ K PE V+SGKE+
Sbjct: 578 AETVNTAAYLINRGPSVPLEHKIPEEVWSGKEV 610
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 344 bits (883), Expect = e-104
Identities = 178/398 (44%), Positives = 249/398 (62%), Gaps = 5/398 (1%)
Frame = -1
Query: 1181 ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNG 1002
A+ A++ +GD +V+ C +W++DSAC+FH+ RN FS+YK V G
Sbjct: 264 ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316
Query: 1001 SVL-MANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 825
V+ M ++ C IVGIG V +K D G TLKNVR++P + NLIS + L+ +G +
Sbjct: 317 DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376
Query: 824 KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 657
GV+K+ KG+LV K + LYV C + +V + + KT+LWH RLGH
Sbjct: 377 DGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNLWHMRLGH 434
Query: 656 MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 477
MS G+ L K S + FC+ C+ GK RV+F S + L+Y+HAD
Sbjct: 435 MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490
Query: 476 VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 297
+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F FKNWK++IE QT +++K L
Sbjct: 491 LWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550
Query: 296 RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSK 117
RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++K
Sbjct: 551 RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610
Query: 116 RFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
RFW EA TA YLINRSPS+PL K P V+SG D+
Sbjct: 611 RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADY 648
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 342 bits (877), Expect = e-104
Identities = 172/399 (43%), Positives = 249/399 (62%), Gaps = 1/399 (0%)
Frame = -1
Query: 1196 QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYK 1017
+ +A + + S ++ + Y C +++ QW++D+ACT+HM P R+ F+ Y+
Sbjct: 269 EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 321
Query: 1016 EVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLE 837
V G+VLM ++ C + GIG V +K G + TL +VRH+P+L +LIS L+ G +
Sbjct: 322 VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYK 381
Query: 836 GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 660
G G++K+ KG+LV+ KA K NLY + + S + SD T+LWH RLG
Sbjct: 382 YSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 441
Query: 659 HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 480
HMS GL L K G +S + FC+ C+ GK RVKF S + IL+Y+H+
Sbjct: 442 HMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 497
Query: 479 DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 300
D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F FK WK ++E QT +++K
Sbjct: 498 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 557
Query: 299 LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 120
LRTDNG+EFC+ +F + C GI RH TVP+TPQQNGVAERMNR ++ + R ML+++GL
Sbjct: 558 LRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLP 617
Query: 119 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
K+FW EAV TA YLINRSPS K K P V+SG ++
Sbjct: 618 KQFWAEAVSTACYLINRSPSYANK-KTPIEVWSGSPANY 655
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 344 bits (882), Expect = e-104
Identities = 177/398 (44%), Positives = 249/398 (62%), Gaps = 5/398 (1%)
Frame = -1
Query: 1181 ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNG 1002
A+ A++ +GD +V+ C +W++DSAC+FH+ RN FS+YK V G
Sbjct: 264 ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316
Query: 1001 SVL-MANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 825
V+ M ++ C IVGIG V +K D G TLKNVR++P + NLIS + L+ +G +
Sbjct: 317 DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376
Query: 824 KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 657
GV+K+ KG+LV K + LYV C + +V + + KT+LWH RLGH
Sbjct: 377 DGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNLWHMRLGH 434
Query: 656 MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 477
MS G+ L K S + FC+ C+ GK RV+F S + L+Y+HAD
Sbjct: 435 MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490
Query: 476 VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 297
+WGP+ +P+ GG RY L++IDD+SRKVW + +K+K + F FKNWK++IE QT +++K L
Sbjct: 491 LWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550
Query: 296 RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSK 117
RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++K
Sbjct: 551 RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610
Query: 116 RFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
RFW EA TA YLINRSPS+PL K P V+SG D+
Sbjct: 611 RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADY 648
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 343 bits (881), Expect = e-104
Identities = 181/408 (44%), Positives = 253/408 (62%), Gaps = 4/408 (0%)
Frame = -1
Query: 1214 QNFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPF 1041
QN +S+ +A++ +++ +GD +V+ C S +W++D+AC+FH+
Sbjct: 253 QNKEKRKSDGKASVVTSAENSDSGDCLVVFAGC-------VASHDEWILDTACSFHICIN 305
Query: 1040 RNLFSNYKEVVNGSVL-MANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISC 864
R+ FS+YK V NG V+ M ++ IVGIG V +K G TLK+VRH+P + NLIS
Sbjct: 306 RDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 365
Query: 863 AALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDK 687
+ L+ +G + GV+K+ KG+LV + NLYV + H S +V+ + K
Sbjct: 366 STLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIK 425
Query: 686 TDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMC 507
T+LWH RLGHMS G+ L K M FC+ CV GK RVKF S +
Sbjct: 426 TNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTK--- 482
Query: 506 SDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIE 327
IL+Y+H D+WGP+ + GG RY L+IIDD+SRKVW + +K+K + F FK WK+ IE
Sbjct: 483 -GILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIE 541
Query: 326 NQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVR 147
QT K +K LRTDNG EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R
Sbjct: 542 RQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKAR 601
Query: 146 SMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
ML+++ ++KRFW EA +TA YLINRSPS+PL K P V+SG D+
Sbjct: 602 CMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADY 649
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 344 bits (882), Expect = e-104
Identities = 177/398 (44%), Positives = 249/398 (62%), Gaps = 5/398 (1%)
Frame = -1
Query: 1181 ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNG 1002
A+ A++ +GD +V+ C +W++DSAC+FH+ RN FS+YK V G
Sbjct: 264 ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316
Query: 1001 SVL-MANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 825
V+ M ++ C IVGIG V +K D G TLKNVR++P + NLIS + L+ +G +
Sbjct: 317 DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376
Query: 824 KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 657
GV+K+ KG+LV K + LYV C + ++ + + KT+LWH RLGH
Sbjct: 377 DGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAA--AITNDEPSKTNLWHMRLGH 434
Query: 656 MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 477
MS G+ L K S + FC+ C+ GK RV+F S + L+Y+HAD
Sbjct: 435 MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490
Query: 476 VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 297
+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F FKNWK++IE QT +++K L
Sbjct: 491 LWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550
Query: 296 RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSK 117
RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++K
Sbjct: 551 RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610
Query: 116 RFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
RFW EA TA YLINRSPS+PL K P V+SG D+
Sbjct: 611 RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADY 648
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 342 bits (876), Expect = e-104
Identities = 168/399 (42%), Positives = 248/399 (62%), Gaps = 1/399 (0%)
Frame = -1
Query: 1196 QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYK 1017
+ +A + + S ++ + Y C +++ QW++D+ACT+HM P R+ F+ Y+
Sbjct: 254 EDEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 306
Query: 1016 EVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLE 837
V G+VLM ++ C + GIG V +K G + TL +VRH+P+L +LIS L+ G +
Sbjct: 307 VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYK 366
Query: 836 GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 660
G G++K+ KG+LV+ KA+ K NLY + + S + SD T+LWH RLG
Sbjct: 367 YSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 426
Query: 659 HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 480
HMS GL L G + + FC+ C+ GK RVKF S + IL+Y+H+
Sbjct: 427 HMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 482
Query: 479 DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 300
D+WGPA + + GG RY ++I++D+SRKVW + +K+K + F FK WK ++E QT +++K
Sbjct: 483 DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 542
Query: 299 LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 120
LRTDNG+EFC+ +F + C GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL
Sbjct: 543 LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 602
Query: 119 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
K+FW EAV TA YLINRSP + K P V+SG ++
Sbjct: 603 KQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANY 641
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 342 bits (877), Expect = e-104
Identities = 169/399 (42%), Positives = 249/399 (62%), Gaps = 1/399 (0%)
Frame = -1
Query: 1196 QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYK 1017
+ +A + + S ++ + Y C +++ QW++D+ACT+HM P R+ F+ Y+
Sbjct: 178 EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 230
Query: 1016 EVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNLISCAALEDDGLE 837
V G+VLM ++ C + GIG V +K G + TL +VRH+P+L +LIS L+ G +
Sbjct: 231 AVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYK 290
Query: 836 GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 660
G G++K+ KG+LV+ KA+ K NLY + + S + SD T+LWH RLG
Sbjct: 291 YSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 350
Query: 659 HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 480
HMS GL L K G + + FC+ C+ GK RVKF S + IL+Y+H+
Sbjct: 351 HMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 406
Query: 479 DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 300
D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K
Sbjct: 407 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 466
Query: 299 LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 120
LRTDNG+E C+ +F + C GI RH TVP+TPQQNGVAERMNRT++ + R ML+++ L
Sbjct: 467 LRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLP 526
Query: 119 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
K+FW EAV TA YLINRSPS + K P V+SG ++
Sbjct: 527 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANY 565
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 338 bits (867), Expect = e-103
Identities = 172/354 (48%), Positives = 227/354 (64%), Gaps = 4/354 (1%)
Frame = -1
Query: 1052 MTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCNNL 873
M P+++LF+ + V +G VLM N+ QC I GIG + +K G + TL NVR +PDL NL
Sbjct: 1 MCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNL 60
Query: 872 ISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQS 693
IS LE G + GV+K+ KG +V+ KA + +LY+ S +V+S S
Sbjct: 61 ISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSA---AVSSSMS 117
Query: 692 DK--TDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPN 519
DK T LWH RLGHMS KG+ +L K G G + + FC+ CV GKQ RV F +
Sbjct: 118 DKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRT 177
Query: 518 QTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWK 339
+ L+Y+H+D+WGP+ P+ GG RY ++IIDDFSRKVWV+ +++K+E F FK WK
Sbjct: 178 K----GTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWK 233
Query: 338 MLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLL 159
L+E QTGK++K LRTDNGLEFC F+ CA GI RHKT+P PQQNGVAER+NRT+L
Sbjct: 234 TLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTIL 293
Query: 158 ERVRSMLASSGL--SKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
ER R ML+++GL + W EA TA YLINRSP L K PE ++SG ID+
Sbjct: 294 ERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPIDY 347
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 341 bits (874), Expect = e-103
Identities = 169/360 (46%), Positives = 227/360 (63%)
Frame = -1
Query: 1082 WLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQCNIVGIGDVCLKFDSGYVLTLKNV 903
W++DS ++H+ P R F+ Y++V GS+ MAN C +VG G + ++ G TL V
Sbjct: 279 WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEV 338
Query: 902 RHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESY 723
RHVP + NLIS + L+ G GV+++ KG+ +I K + LY + S
Sbjct: 339 RHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSA 398
Query: 722 VHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVK 543
S Q D T LWH RLGHM +G++IL K K+ + FC+ CV GK R K
Sbjct: 399 HVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNK 458
Query: 542 FPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEV 363
FP + + L+Y+H+D WGP + GG R+F+SIIDD+SR WV++MK+KSE
Sbjct: 459 FPKAIHRTK----GTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEA 514
Query: 362 FEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVA 183
F+KFK WK+L+ENQTGK+IK LRTDNGLEFC + FD C + GI RH+TV TPQQNGVA
Sbjct: 515 FQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVA 574
Query: 182 ERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDF 3
ERMN+TLLER R ML+++GL +RFW EAV TA YLINR P ++ K P ++SGK D+
Sbjct: 575 ERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADY 634