BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00057343
         (1380 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]   380   e-117
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   370   e-115
gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposo...   362   e-115
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   368   e-112
ref|XP_012857659.1| PREDICTED: uncharacterized protein LOC105976...   355   e-110
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   358   e-108
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   358   e-108
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   352   e-107
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   345   e-103
ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotei...   332   e-102
ref|XP_013594438.1| PREDICTED: uncharacterized protein LOC106302...   335   e-102
ref|XP_009109940.1| PREDICTED: uncharacterized protein LOC103835...   334   e-102
ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotei...   332   e-101
ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotei...   332   e-101
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]               337   e-100
ref|XP_010412743.1| PREDICTED: uncharacterized protein LOC104699...   330   e-100
gb|KYP74810.1| Retrovirus-related Pol polyprotein from transposo...   320   2e-99
ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotei...   332   3e-99
ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotei...   332   4e-99
ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotei...   332   5e-99

>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
          Length = 1288

 Score =  380 bits (977), Expect = e-117
 Identities = 208/463 (44%), Positives = 267/463 (57%), Gaps = 12/463 (2%)
 Frame = +2

Query: 26   VWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASSPFAL 205
            +WHSRLGH S +RL+ L + L  + S      PC +CPLAKQR LP+   N   SS F L
Sbjct: 415  LWHSRLGHPSFSRLKGLQSVLDFDSSFDLT--PCNVCPLAKQRCLPYISLNKRCSSTFDL 472

Query: 206  VHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFGGI 385
            +H DIWGPF V S  G++FF T+VDD +R TWVYMLKNKS+V + IP+F + +  QFG  
Sbjct: 473  LHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKE 532

Query: 386  IKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSKVP 565
            +K  RSDNAPEL  +  +   G++H  SCVE PQQNSVVERKHQH+LNVARAL F S +P
Sbjct: 533  VKAIRSDNAPELFLSNFYHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFXSSLP 592

Query: 566  TAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQRTK 745
              + S+CILTA +LINRTP+P LN KTP+ +L+ +  DYS LRVFGCL +VSTL + RTK
Sbjct: 593  VCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTK 652

Query: 746  FQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDV-----------VFHENLFPFHSLD 892
            F PRA   VF+GY  G K YKL DI+ +   ISR+            +FH+ + P  + D
Sbjct: 653  FSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRNTNPCSSPDISSDLFHDRVLPCIAAD 712

Query: 893  SHLPIADXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRDFHCSLITSP 1072
            +                 S                            YL+D+HCSLI S 
Sbjct: 713  N--------------DQSSSVLPRVVSQPPLQVAPSSRPTRVSKQPSYLKDYHCSLINSV 758

Query: 1073 NPINSQTXXXXXXXXXXXXXXXXXXNLI-LHISSSFEPRFYHEAVPFSHWRTAMREELDA 1249
              + + +                   L  L +S   EP  + +A     WR AM  EL+A
Sbjct: 759  AHVETHSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEA 818

Query: 1250 MEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            +E+N T +IV LP  KH +GC+W+YK KH  DG+I RYKARLV
Sbjct: 819  LEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYKARLV 861


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  370 bits (950), Expect = e-115
 Identities = 204/480 (42%), Positives = 269/480 (56%), Gaps = 29/480 (6%)
 Frame = +2

Query: 26   VWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASSPFAL 205
            +WH RLGHLS +  +++++   + VS    + PC IC  AKQ++LP  +SN+ ++S   L
Sbjct: 88   LWHHRLGHLSNSTHRIIASQFPI-VSYQHHDVPCDICHFAKQKRLPHFISNTKSASVIEL 146

Query: 206  VHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFGGI 385
            +H DIWGP+ +PS  GH++F TLVDD +RFTW+ M+K+KS+  Q + NFIS I TQF   
Sbjct: 147  LHADIWGPYSIPSVFGHKYFLTLVDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTK 206

Query: 386  IKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSKVP 565
            +K  R+DN  E      F  KGI+HQ SCVE PQQN VVERKHQH+LN ARAL+FQ+ +P
Sbjct: 207  LKCLRTDNGSEFLMHDLFLSKGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLP 266

Query: 566  TAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQRTK 745
              F +  I  A  LINR P+PLL+ KTPY  L+ +P     LR FGCLA+ STL + RTK
Sbjct: 267  KNFWNFAIQHAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTK 326

Query: 746  FQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHS------------- 886
            FQPRA   V +GY  G+K Y LYD+ + +F +SR+V FHE  FPFH+             
Sbjct: 327  FQPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTP 386

Query: 887  ------------LDSHLPIADXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXX 1030
                        LD+H+P              S                           
Sbjct: 387  ITIQTPISSPYDLDNHVP-------PSPTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPP 439

Query: 1031 XYLRDFHCSLITSPNPINS----QTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHE 1198
             YL+D+HCSL+     INS     T                     L +S++FEP  Y +
Sbjct: 440  SYLKDYHCSLLAPTGRINSFSGISTPHSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQ 499

Query: 1199 AVPFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            A  +  W  AM+ EL A++ N TW+IV LP  K  IGC+W+YKIK+ SDGSI RYKARLV
Sbjct: 500  ASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLV 559


>gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 731

 Score =  362 bits (929), Expect = e-115
 Identities = 196/477 (41%), Positives = 268/477 (56%), Gaps = 20/477 (4%)
 Frame = +2

Query: 8    NKVSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIA 187
            N V+ E WH RLGH+  +  +L++  ++L+   +T +  C  C +AKQ +LPF   N  +
Sbjct: 137  NSVTYETWHKRLGHIPISVYKLIANKIKLSSIDSTYH--CSTCNIAKQNRLPFPNPNKFS 194

Query: 188  SSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIF 367
             S F L+H DIWGPF  P++ G R+F TLVDD +RFTW+YML+NKSD  + IP   + + 
Sbjct: 195  PSCFDLIHADIWGPFKQPTYDGFRYFLTLVDDKSRFTWIYMLQNKSDCIKNIPQIFAYVE 254

Query: 368  TQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALF 547
             QF   IK+FRSDN  EL F   F EKG+LHQF CVERP+QNSVVERKH H+LN+AR L 
Sbjct: 255  NQFQTKIKSFRSDNVRELHFKDFFLEKGVLHQFLCVERPKQNSVVERKHLHILNIARTLM 314

Query: 548  FQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTL 727
            FQS VP     + + T  F++NRTP+P+LN  +PY +LY++  +YS  R FG L + STL
Sbjct: 315  FQSNVPIKIWGDYVKTVVFIMNRTPSPILNHISPYEILYNKVPNYSDFRTFGTLCYASTL 374

Query: 728  SSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDV------------------ 853
             S R KF PRA+  VFIGY  G K YKL+D+   Q  IS+DV                  
Sbjct: 375  LSGRHKFSPRAIAAVFIGYPHGYKGYKLFDLTTHQTFISKDVKFYEHIFPFQNSNSSDRG 434

Query: 854  --VFHENLFPFHSLDSHLPIADXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXX 1027
              VF++ + P  +L+      D                                      
Sbjct: 435  HGVFNDQITP--NLNHPATFDDSDPIQPTHTQNQFTIQQLSPPNEPDQAPIRRSNRAVNP 492

Query: 1028 XXYLRDFHCSLITSPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVP 1207
              YL D+HC  +T+    N+QT                  + I  I ++ EP+ Y +A+ 
Sbjct: 493  PGYLSDYHCYNVTT----NTQTLYPIQKFIDYSKLSKTHNHYICQIFANHEPQTYKQAIK 548

Query: 1208 FSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            F HW+ A+ +EL AME NNTW+I  LP +K  I C+W++K+K NSDG+IA++KARLV
Sbjct: 549  FPHWKQAIEDELTAMEINNTWSITHLPNDKKQISCKWLFKLKLNSDGTIAKHKARLV 605


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
            (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  368 bits (944), Expect = e-112
 Identities = 199/474 (41%), Positives = 259/474 (54%), Gaps = 16/474 (3%)
 Frame = +2

Query: 5    ANKVSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSI 184
            A+  S ++WH RLGH S  +LQ +S+ L         +  C +C ++KQ+ LPF   N+ 
Sbjct: 399  ASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNK 458

Query: 185  ASSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMI 364
            +S PF L+H D WGPF V +H G+R+F T+VDD +R TWVY+L+NKSDV  VIP F++M+
Sbjct: 459  SSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMV 518

Query: 365  FTQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARAL 544
              QF   IK  RSDNAPEL FT  +  KGI+   SC E PQQNSVVERKHQH+LNVAR+L
Sbjct: 519  ENQFETTIKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSL 578

Query: 545  FFQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVST 724
            FFQS +P ++  +CILTA +LINR P P+L  K P+ +L      Y  ++VFGCL + ST
Sbjct: 579  FFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYAST 638

Query: 725  LSSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFP--------- 877
                R KF PRA  C FIGY  G K YKL D++    ++SR VVFHE LFP         
Sbjct: 639  SPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQE 698

Query: 878  ----FHSLDSHLPIADXXXXXXXXXXXS---EXXXXXXXXXXXXXXXXXXXXXXXXXXXY 1036
                F  L+   P+             S   E                           Y
Sbjct: 699  EQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKPAY 758

Query: 1037 LRDFHCSLITSPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVPFSH 1216
            L+D++C  + S  P   +                     +  +  + EP  Y EA     
Sbjct: 759  LQDYYCHSVVSSTPHEIRKFLSYDRINDPYL------TFLACLDKTKEPSNYTEAEKLQV 812

Query: 1217 WRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            WR AM  E D +E  +TW +  LP +K  IGCRWI+KIK+NSDGS+ RYKARLV
Sbjct: 813  WRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLV 866


>ref|XP_012857659.1| PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata]
          Length = 944

 Score =  355 bits (912), Expect = e-110
 Identities = 166/299 (55%), Positives = 218/299 (72%), Gaps = 1/299 (0%)
 Frame = +2

Query: 2    FANKVSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNS 181
            F NK+SA VWH RLGH+   +L  L+    L+V   + +  C +CPLAKQ++L F  S+S
Sbjct: 525  FCNKISATVWHHRLGHIPQPKLAFLAKKFSLSVDKISESSCCYVCPLAKQKRLHFSNSSS 584

Query: 182  IASSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISM 361
            ++++ F L+HCDIWGPF VPS+ G  +F TLVDD +RFTWV++LK KS+V  V+P F+ M
Sbjct: 585  VSTAMFDLIHCDIWGPFKVPSYSGFHYFVTLVDDYSRFTWVHLLKTKSEVITVVPRFLKM 644

Query: 362  IFTQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARA 541
            +  QFG  IK FRSDNA EL+F + F E G++HQFSCV  PQQN++VERKHQH+LNVAR+
Sbjct: 645  VLNQFGKSIKVFRSDNAYELQFKSLFDELGVIHQFSCVYTPQQNAIVERKHQHILNVARS 704

Query: 542  LFFQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLY-SQPFDYSSLRVFGCLAFV 718
            LFFQS +P  + SECILTA FLINR P   LN  +PY LLY ++PFDY SL+ FGCL F 
Sbjct: 705  LFFQSHIPITYWSECILTAVFLINRIPAHNLNDLSPYELLYPAKPFDYHSLKSFGCLVFA 764

Query: 719  STLSSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDS 895
            + +S  ++KF PRA  CVF+GY  G+K YKL D+ + +  ISRDV+FHEN++PF +  S
Sbjct: 765  TDVSGHKSKFDPRANACVFLGYPSGIKGYKLLDLVSHKVFISRDVIFHENIYPFTNKSS 823


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  358 bits (920), Expect = e-108
 Identities = 191/455 (41%), Positives = 259/455 (56%)
 Frame = +2

Query: 14   VSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASS 193
            V + +WHSRLGH S  +  +L   L L          C IC  AKQ+ L F   N+++ +
Sbjct: 581  VDSALWHSRLGHPSYEKNDVLHDVLGLPKRNKEDLVHCSICQKAKQKHLSFPSKNNMSEN 640

Query: 194  PFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQ 373
             F L+H D WGPF  P+  G+++F T+VDD +R TWVY++K K+DV Q+ P+F+ M+ TQ
Sbjct: 641  KFDLIHIDTWGPFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQ 700

Query: 374  FGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQ 553
            +G ++K  RSDNAPEL+F A +Q KGI+   SC E PQQNSVVERKHQH+LNVARAL F+
Sbjct: 701  YGTLVKAVRSDNAPELRFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFE 760

Query: 554  SKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSS 733
            + +P  F  +CIL+A FLINR PTPLL+ K+P+ LL+ +  DY+SL+VFGCL + ST   
Sbjct: 761  ANMPLEFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQ 820

Query: 734  QRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
            QR KF PRA  CVF+GY  G K YKL D++     ISR VVF+E +FPF   D  +   D
Sbjct: 821  QRHKFAPRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPF--TDKTIIPRD 878

Query: 914  XXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRDFHCSLITSPNPINSQT 1093
                        E                           YL+D+ C+ +     +    
Sbjct: 879  VFDLVDPVHENIE-----NPPSTSESAPKVSSKRESRPPGYLQDYFCNAVPD---VTKDV 930

Query: 1094 XXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVPFSHWRTAMREELDAMEKNNTWA 1273
                                I  ++   EP  Y +A     W  AM  E+DA+E  NTW+
Sbjct: 931  RYPLNAYINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWS 990

Query: 1274 IVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            +  LP  K  IGC+W++K+K N+DGS+ R+KARLV
Sbjct: 991  VCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLV 1025


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  358 bits (919), Expect = e-108
 Identities = 191/457 (41%), Positives = 260/457 (56%), Gaps = 2/457 (0%)
 Frame = +2

Query: 14   VSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASS 193
            V   VWH RLGH S +RL  LS  L         +  C +C LAKQ+KL F  +N+I +S
Sbjct: 564  VDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNS 623

Query: 194  PFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQ 373
             F L+H D+WGPF V +  G+++F T+VDD +R TW+Y+LK+KSDV  V P FI ++  Q
Sbjct: 624  TFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQ 683

Query: 374  FGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQ 553
            +   +K+ RSDNA EL FT  ++ KGI+   SC E P+QNSVVERKHQH+LNVARAL FQ
Sbjct: 684  YDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQ 743

Query: 554  SKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSS 733
            S +   +  +C+LTA FLINRTP+ LL+ KTP+ +L  +  DYS L+ FGCL + ST S 
Sbjct: 744  SNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSK 803

Query: 734  QRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
            QR KF PR+  CVF+GY  G K YKL D+++    ISR+V FHE LFP  S       A 
Sbjct: 804  QRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTAS 863

Query: 914  XXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRDFHCSLIT--SPNPINS 1087
                                                    +L+D+HC  +     +PI+S
Sbjct: 864  DVFTPMDPLSSGNSITSHLPSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISS 923

Query: 1088 QTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVPFSHWRTAMREELDAMEKNNT 1267
                                  I +IS    P+ YHEA     W  A+ +E+ AME+ +T
Sbjct: 924  SLSYSQISPSHML--------YINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDT 975

Query: 1268 WAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            W I  LPP K ++GC+W++ +K ++DGS+ R+KAR+V
Sbjct: 976  WEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIV 1012


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
          Length = 1131

 Score =  352 bits (904), Expect = e-107
 Identities = 191/457 (41%), Positives = 261/457 (57%), Gaps = 2/457 (0%)
 Frame = +2

Query: 14   VSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASS 193
            V   +WH RLGH S  RL  +S  L         +  C +C LAKQ+KL +   N I ++
Sbjct: 513  VDISLWHKRLGHPSYTRLDKISEALGTTKHKNKGDAHCHVCHLAKQKKLSYSSQNHICTA 572

Query: 194  PFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQ 373
             F L+H D+WGPF V +  G+++F T+VDD +R TW+Y+L++KSDV  + P F++ I TQ
Sbjct: 573  SFQLLHVDVWGPFSVETLEGYKYFLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQ 632

Query: 374  FGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQ 553
            +   IK+ R DNAPEL FT  F+EKGI+   SC E  +QNSV+ERKHQHLLNVARAL FQ
Sbjct: 633  YNTKIKSVRRDNAPELSFTELFKEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQ 692

Query: 554  SKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSS 733
            S+VP  +  +C+LTA FLINRTP+PLL  K+PY +L  +   Y  LR FGCL + ST   
Sbjct: 693  SQVPLQYWGDCVLTAAFLINRTPSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPK 752

Query: 734  QRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
            QR KF PR+  CVF+GY  G K YKL D+++ +  ISR+V FHE++FP   +  H  + +
Sbjct: 753  QRHKFMPRSRACVFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFP---MAKHQKMDE 809

Query: 914  -XXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRDFHC-SLITSPNPINS 1087
                                                     +L+DFHC S+  S  PI+S
Sbjct: 810  SSLHFFPPKVTVPSAPSPNISSSPFSTLSPQISKRQRTVPAHLKDFHCYSVHDSAYPISS 869

Query: 1088 QTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVPFSHWRTAMREELDAMEKNNT 1267
                                  I  I++   P+ Y E      W  +  +ELDAME+N+T
Sbjct: 870  TLSYSQISSHHLA--------YINSITNIPIPQSYAEVRQSKEWTESADKELDAMEENDT 921

Query: 1268 WAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            W +VPLP  K +IGCRW++ +K N+DG++ R K+RLV
Sbjct: 922  WDVVPLPKGKKAIGCRWVHTLKFNADGTLERRKSRLV 958


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  345 bits (884), Expect = e-103
 Identities = 194/464 (41%), Positives = 253/464 (54%), Gaps = 9/464 (1%)
 Frame = +2

Query: 14   VSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASS 193
            V   +WH RLGH S  RL  +S  L         +  C +C LAKQRKL F  SN +   
Sbjct: 553  VDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKE 612

Query: 194  PFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQ 373
             F L+H D+WGPF V +  G+++F T+VDD +R TW+Y+LK KS+V  V P FI  +  Q
Sbjct: 613  IFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQ 672

Query: 374  FGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQ 553
            +   +K  RSDNAPELKFT+ + EKGI+   SC E P+QNSVVERKHQH+LNVARAL FQ
Sbjct: 673  YKVKVKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQ 732

Query: 554  SKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSS 733
            S+VP +   +C+LTA FLINRTP+ LL  KTPY +L      Y  LR FGCL + ST   
Sbjct: 733  SQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPK 792

Query: 734  QRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPF-------HSLD 892
            QR KFQPR+  C+F+GY  G K YKL D+++    ISR+V FHE +FP         SL 
Sbjct: 793  QRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLK 852

Query: 893  SHLPIADXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRDFHCSLITSP 1072
               P+             S                            +L D+HC+ + S 
Sbjct: 853  LFTPMVPVSSGIISDTTHS---PSSLPSQISDLPPQISSQRVRKPPAHLNDYHCNTMQSD 909

Query: 1073 N--PINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAVPFSHWRTAMREELD 1246
            +  PI+S                      I +I+    P  Y EA     W  A+  E+ 
Sbjct: 910  HKYPISSTISYSKISPSHMC--------YINNITKIPIPTNYAEAQDTKEWCEAVDAEIG 961

Query: 1247 AMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
            AMEK NTW I  LP  K ++GC+W++ +K  +DG++ RYKARLV
Sbjct: 962  AMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLV 1005


>ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 isoform X6 [Tarenaya hassleriana]
          Length = 789

 Score =  332 bits (850), Expect = e-102
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23  EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
           ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 89  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 148

Query: 200 ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
            L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 149 ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 208

Query: 380 GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
             IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 209 ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 268

Query: 560 VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
           VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 269 VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 328

Query: 740 TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
            KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 329 HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 386



 Score = 97.1 bits (240), Expect = 7e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 456  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 514

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 515  KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 572


>ref|XP_013594438.1| PREDICTED: uncharacterized protein LOC106302482 [Brassica oleracea
            var. oleracea]
          Length = 977

 Score =  335 bits (858), Expect = e-102
 Identities = 159/303 (52%), Positives = 209/303 (68%), Gaps = 2/303 (0%)
 Frame = +2

Query: 2    FANKVSAE--VWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVS 175
            F   +SA+  +WH RLGH SPA+LQ+LS +L +       +  C +CPLAKQ++L F  +
Sbjct: 577  FTGSLSADGMLWHQRLGHPSPAKLQVLSTELSIPRCIIPSHSTCTVCPLAKQKRLSFPFN 636

Query: 176  NSIASSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFI 355
            N+++  PF L+H DIWGPF   S  G+++F T+VDDC+R TW+++LK KSDV  + P F+
Sbjct: 637  NNLSLKPFDLLHLDIWGPFAQESIEGYKYFLTIVDDCSRVTWIHLLKRKSDVITLFPEFL 696

Query: 356  SMIFTQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVA 535
              ++TQ+   +K  RSDNAPEL+F    +  G++H FSC   P+QNSVVERKHQHLLNVA
Sbjct: 697  QRVYTQYNVRVKAIRSDNAPELRFAKLIKTNGMIHYFSCAYTPEQNSVVERKHQHLLNVA 756

Query: 536  RALFFQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAF 715
            RAL FQS VP  + S+CI TA FLINR P+PLL+ +TPY +L  +  DYS LR FGCL +
Sbjct: 757  RALLFQSNVPLLYWSDCITTAVFLINRIPSPLLDHRTPYEVLLKRKPDYSLLRSFGCLCY 816

Query: 716  VSTLSSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDS 895
            VSTL   R KF PRA PC+F+GY  G K YKL D+ N    ISR VVFHE+++P  S  S
Sbjct: 817  VSTLQKDRNKFSPRARPCLFLGYPSGYKGYKLLDLDNNSVSISRHVVFHESVYPLKSSTS 876

Query: 896  HLP 904
             +P
Sbjct: 877  IIP 879


>ref|XP_009109940.1| PREDICTED: uncharacterized protein LOC103835509 [Brassica rapa]
          Length = 944

 Score =  334 bits (856), Expect = e-102
 Identities = 159/303 (52%), Positives = 209/303 (68%), Gaps = 2/303 (0%)
 Frame = +2

Query: 2    FANKVSAE--VWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVS 175
            F   +SA+  +WH RLGH SPA+LQ+LS +L +       +  C +CPLAKQ++L F  +
Sbjct: 577  FTGSLSADGMLWHQRLGHPSPAKLQVLSTELSIPRCIIPSHSTCTVCPLAKQKRLSFPFN 636

Query: 176  NSIASSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFI 355
            N+++  PF L H DIWGPF   S  G+++F T+VDDC+R TW+++LK KSDV  + P F+
Sbjct: 637  NNLSLKPFDLHHLDIWGPFAQESIEGYKYFLTIVDDCSRVTWIHLLKRKSDVITLFPEFL 696

Query: 356  SMIFTQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVA 535
              ++TQ+   +K  RSDNAPEL+F    +  G++H FSC   P+QNSVVERKHQHLLNVA
Sbjct: 697  QRVYTQYNVRVKAIRSDNAPELRFAELIKTHGMIHYFSCAYTPEQNSVVERKHQHLLNVA 756

Query: 536  RALFFQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAF 715
            RAL FQS VP  + S+CI T+ FLINRTP+PLL+ +TPY +L  +  DYS LR FGCL +
Sbjct: 757  RALLFQSNVPLLYWSDCITTSVFLINRTPSPLLDHRTPYEVLLKRKPDYSLLRSFGCLCY 816

Query: 716  VSTLSSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDS 895
            VSTL   R KF PRA PC+F+GY  G K YKL D+ N    ISR VVFHE+++P  S  S
Sbjct: 817  VSTLQKDRNKFSPRARPCLFLGYPSGYKGYKLLDLDNNSVSISRHVVFHESVYPLKSSTS 876

Query: 896  HLP 904
             +P
Sbjct: 877  IIP 879


>ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X5 [Tarenaya hassleriana]
          Length = 886

 Score =  332 bits (850), Expect = e-101
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23   EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
            ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 186  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 245

Query: 200  ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
             L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 246  ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 305

Query: 380  GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
              IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 306  ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 365

Query: 560  VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
            VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 366  VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 425

Query: 740  TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
             KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 426  HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 483



 Score = 97.1 bits (240), Expect = 7e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 553  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 611

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 612  KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 669


>ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X4 [Tarenaya hassleriana]
          Length = 940

 Score =  332 bits (850), Expect = e-101
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23   EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
            ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 240  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 299

Query: 200  ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
             L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 300  ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 359

Query: 380  GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
              IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 360  ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 419

Query: 560  VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
            VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 420  VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 479

Query: 740  TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
             KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 480  HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 537



 Score = 97.1 bits (240), Expect = 8e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 607  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 665

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 666  KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 723


>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
          Length = 1436

 Score =  337 bits (865), Expect = e-100
 Identities = 197/485 (40%), Positives = 258/485 (53%), Gaps = 29/485 (5%)
 Frame = +2

Query: 11   KVSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKP---CCICPLAKQRKLPFDVSNS 181
            K  +E+WH RLGH S A++  LS  L L      +NK    C +C L+KQ+ LPF   N 
Sbjct: 552  KNESEMWHKRLGHPSFAKIDTLSDVLML--PKQKINKDSSHCHVCHLSKQKHLPFKSVNH 609

Query: 182  IASSPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISM 361
            I    F LVH D WGPF VP+   +R+F T+VDD +R TW+Y+LK KSDV  V P+F+ M
Sbjct: 610  IREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKM 669

Query: 362  IFTQFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARA 541
            + TQ+   + + RSDNA ELKF   F ++GI     C E P+QN VVERKHQHLLNVARA
Sbjct: 670  VETQYHTKVCSVRSDNAHELKFNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARA 729

Query: 542  LFFQSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVS 721
            L FQS +P  +  +C+LTA FLINR  +P++N +TPY  L     DYSSL+ FGCL + S
Sbjct: 730  LMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCS 789

Query: 722  TLSSQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSL---- 889
            T    RTKF PRA  C+F+GY +G K YKL DI+     ISR V+F+E++FPF S     
Sbjct: 790  TSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNITD 849

Query: 890  ----------------DSHLPIADXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXXXXXX 1021
                            D HLP+             S                        
Sbjct: 850  AAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDESS--------SMIFVPSEPKSTRQR 901

Query: 1022 XXXXYLRDFHC------SLITSPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEP 1183
                +L+DFHC      +  TSP P+ +                      I  I+++  P
Sbjct: 902  KLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFGA--------FINIITATKLP 953

Query: 1184 RFYHEAVPFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARY 1363
            + Y EA     W  AM +E+ A  +  TW+I  LP  K ++GC+WI  IK  +DGSI R+
Sbjct: 954  QKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLADGSIERH 1013

Query: 1364 KARLV 1378
            KARLV
Sbjct: 1014 KARLV 1018


>ref|XP_010412743.1| PREDICTED: uncharacterized protein LOC104699096 [Camelina sativa]
          Length = 971

 Score =  330 bits (847), Expect = e-100
 Identities = 156/301 (51%), Positives = 208/301 (69%)
 Frame = +2

Query: 11   KVSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIAS 190
            +V   VWH RLGH S  +LQ +S  L + +S ++ +  C ICPLAKQ+KLPF   + +++
Sbjct: 470  QVDGRVWHQRLGHPSSVKLQYMSGTLPMFISNSSSHDHCDICPLAKQKKLPFVSHSKLSA 529

Query: 191  SPFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFT 370
             PF L+H D WGPF V S  G+R+F T+VDDCTR TW+YM++NK+DV  + P+F+  + T
Sbjct: 530  LPFDLIHIDTWGPFSVESIEGYRYFLTIVDDCTRITWIYMMRNKNDVLSIFPSFVKHVQT 589

Query: 371  QFGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFF 550
            Q+  +IK  RSDNAPEL F+   ++ G+LH FSC   PQQNSVVERKHQHLLNVA AL F
Sbjct: 590  QYNSVIKIVRSDNAPELGFSQLVKDHGMLHHFSCPYTPQQNSVVERKHQHLLNVAHALLF 649

Query: 551  QSKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLS 730
            QS VP  + S+CI TA FLINRTP+ +L+  +PY   +    DYS LR FGCL + STL+
Sbjct: 650  QSNVPLCYRSDCIHTAAFLINRTPSLVLDKMSPYEKNFKPKPDYSFLRSFGCLCYASTLA 709

Query: 731  SQRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIA 910
              R KF PRA PCVF+GY  G K YK+ +++     I+R++VFHE++FPF ++   LP  
Sbjct: 710  KDRNKFIPRAEPCVFLGYPSGYKGYKVLNLETNVVHITRNIVFHEHIFPFKNVTPSLPTT 769

Query: 911  D 913
            D
Sbjct: 770  D 770


>gb|KYP74810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 669

 Score =  320 bits (821), Expect = 2e-99
 Identities = 151/290 (52%), Positives = 202/290 (69%)
 Frame = +2

Query: 14   VSAEVWHSRLGHLSPARLQLLSADLQLNVSPATLNKPCCICPLAKQRKLPFDVSNSIASS 193
            ++ ++WH R GH++   L+ LS     N  P T+   C ICP+AK ++LPF   N   + 
Sbjct: 191  LNIDIWHYRFGHVNDLVLKTLS-----NKVPFTI---CHICPVAKFKRLPFQCHNHFCTK 242

Query: 194  PFALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQ 373
            PF L+HCD+WGP+  P++   ++F TLVDD +R+TW+++L+ K++    I +F S+I  Q
Sbjct: 243  PFDLIHCDVWGPYRHPTYNSMKYFLTLVDDHSRYTWIHLLRTKAEATSAIKSFFSLIQNQ 302

Query: 374  FGGIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQ 553
            FG  IK FRSDNA EL  T   +EKG +HQ SCV+RPQQN+VVERKHQHLL+VARAL++Q
Sbjct: 303  FGVTIKQFRSDNAKELALTEFLKEKGTIHQLSCVKRPQQNAVVERKHQHLLSVARALYYQ 362

Query: 554  SKVPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSS 733
            SK+P  F  +CI TA FLINR P+P     +PY LLY    DY+ L+ FGCL F +TL+S
Sbjct: 363  SKIPIRFWGDCITTAAFLINRMPSPNTKNISPYNLLYP---DYTVLKSFGCLCFAATLNS 419

Query: 734  QRTKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFH 883
            QR KF PR+  C+FIGY +GMK YKL DIQ K+  +SRDV+FHE  FP+H
Sbjct: 420  QRDKFSPRSTTCIFIGYPLGMKGYKLCDIQTKRVFVSRDVIFHETTFPYH 469


>ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X3 [Tarenaya hassleriana]
          Length = 1238

 Score =  332 bits (850), Expect = 3e-99
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23   EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
            ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 575  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 634

Query: 200  ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
             L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 635  ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 694

Query: 380  GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
              IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 695  ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 754

Query: 560  VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
            VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 755  VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 814

Query: 740  TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
             KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 815  HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 872



 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 942  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 1000

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 1001 KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 1058


>ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X2 [Tarenaya hassleriana]
          Length = 1244

 Score =  332 bits (850), Expect = 4e-99
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23   EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
            ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 544  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 603

Query: 200  ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
             L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 604  ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 663

Query: 380  GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
              IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 664  ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 723

Query: 560  VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
            VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 724  VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 783

Query: 740  TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
             KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 784  HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 841



 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 911  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 969

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 970  KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 1027


>ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X1 [Tarenaya hassleriana]
          Length = 1275

 Score =  332 bits (850), Expect = 5e-99
 Identities = 165/298 (55%), Positives = 204/298 (68%), Gaps = 1/298 (0%)
 Frame = +2

Query: 23   EVWHSRLGHLSPARLQLLSADLQLNVSPA-TLNKPCCICPLAKQRKLPFDVSNSIASSPF 199
            ++WH RLGH S  R+  +    +L  S + T +  C +CPLAKQR+L F VS+ ++  PF
Sbjct: 575  DLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPF 634

Query: 200  ALVHCDIWGPFHVPSHGGHRFFATLVDDCTRFTWVYMLKNKSDVGQVIPNFISMIFTQFG 379
             L+H D+WGP    S  GHRFF ++VDD +R TWVY+LK+KSDV Q  P F+S +  QF 
Sbjct: 635  ELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFN 694

Query: 380  GIIKTFRSDNAPELKFTASFQEKGILHQFSCVERPQQNSVVERKHQHLLNVARALFFQSK 559
              IK  RSDNAPEL F + F +KGILHQFSC   PQQNS+VERKHQH+LNVARAL FQS 
Sbjct: 695  ASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSN 754

Query: 560  VPTAFCSECILTATFLINRTPTPLLNGKTPYTLLYSQPFDYSSLRVFGCLAFVSTLSSQR 739
            VP AF  +CILT+ +LINRTP+PLL  KTP+ LL      YS LRVFGCL +VSTL+  R
Sbjct: 755  VPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDR 814

Query: 740  TKFQPRAVPCVFIGYLVGMKAYKLYDIQNKQFLISRDVVFHENLFPFHSLDSHLPIAD 913
             KF PRA+  VF+GY  G+K YK+ D+ +   LISR+VVFHE  FPF S     P  D
Sbjct: 815  HKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALD 872



 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 1034 YLRDFHCSLIT---SPNPINSQTXXXXXXXXXXXXXXXXXXNLILHISSSFEPRFYHEAV 1204
            YL D+HC LI+   +P+P N  T                     L+I+++ EP+ Y +A 
Sbjct: 942  YLSDYHCYLISHNSTPHP-NPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAA 1000

Query: 1205 PFSHWRTAMREELDAMEKNNTWAIVPLPPNKHSIGCRWIYKIKHNSDGSIARYKARLV 1378
             F  WR AM+ EL+A+ + NTW+I  LP  K+++GC+W++K K+N+DGSI R+KARLV
Sbjct: 1001 KFESWRQAMKLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLV 1058