BLASTX nr result
ID: Rehmannia27_contig00054704
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00054704
(441 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 139 1e-35
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 138 4e-35
emb|CAN76948.1| hypothetical protein VITISV_017167 [Vitis vinifera] 135 4e-35
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 135 3e-34
gb|AAB82754.1| retrofit [Oryza longistaminata] 135 3e-34
gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subc... 133 1e-33
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 132 3e-33
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 132 4e-33
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 132 4e-33
gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposo... 131 4e-33
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 130 1e-32
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 130 2e-32
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 130 2e-32
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 130 2e-32
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 130 2e-32
gb|KYP59043.1| Retrovirus-related Pol polyprotein from transposo... 127 2e-32
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group] 130 2e-32
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 129 3e-32
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 129 3e-32
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 129 5e-32
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 139 bits (351), Expect = 1e-35
Identities = 69/145 (47%), Positives = 92/145 (63%), Gaps = 4/145 (2%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK + +P E NQKPNY +R FGCACWPNLR YN K+ FRSK C+FLGYS
Sbjct: 569 RTPSKVIQYSTPLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSNI 628
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSLCHSNPQTNH 357
H+G+KCLD+ TG++Y+SR V+FDE++FP+ + S + + LPS+L NP+
Sbjct: 629 HKGFKCLDVATGRVYISRDVVFDENIFPFSQLHSNAGARLRSEILLLPSTLL--NPEIAS 686
Query: 358 AGPQINS-CDQVPNDQSN--SNHVP 423
G Q+N P+ +SN S H P
Sbjct: 687 RGMQVNDHMSNAPSGESNIISEHAP 711
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 138 bits (347), Expect = 4e-35
Identities = 62/122 (50%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PSK + N +P E +NQKP+YL +RVFGCACWP+LR YN HK+ FRSK C+FLG+S
Sbjct: 654 RVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTH 713
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSLCHSNPQTNH 357
H+G+KCLD+ +G++Y+SR V+FDE++FP+ S + + LPSSL +N +T
Sbjct: 714 HKGFKCLDVSSGRVYISRDVVFDENIFPFSTLHSNAGARLRSEILLLPSSL--TNYETTS 771
Query: 358 AG 363
G
Sbjct: 772 TG 773
>emb|CAN76948.1| hypothetical protein VITISV_017167 [Vitis vinifera]
Length = 467
Score = 135 bits (340), Expect = 4e-35
Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
RL + L ++SP+E+ ++ K +Y F+ FGCACWP LR YN+HK+DF SKTC+F+ YS+
Sbjct: 290 RLXTPILQHRSPYEMVHHHKXDYNFLXAFGCACWPYLRPYNRHKMDFXSKTCIFIRYSVG 349
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSLPSSLCHS-NPQTNH 357
H+GYKCLD+ T KI+VS HV+F+ESL+PY S P P LP +L S + +
Sbjct: 350 HRGYKCLDVSTXKIFVSXHVVFBESLYPYTIPESIEPTPKPTPIVLPPNLNLSLSSSSVS 409
Query: 358 AGPQINSCDQVPNDQSNSNHVPLDIH 435
G + S P ++++ D+H
Sbjct: 410 XGINVQSAXPSPLHMASTSXPHTDLH 435
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 135 bits (340), Expect = 3e-34
Identities = 61/111 (54%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
RLPSK + +P E +QKPNY +R FGCACWPNLR YNK K++FRSK C+FLGYS
Sbjct: 265 RLPSKVIQYSAPLERLLDQKPNYSALRTFGCACWPNLRPYNKRKLEFRSKQCVFLGYSNI 324
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSL 330
H+G+KCLD+ TG++Y+SR V+FDE++FP+ K S + + LPSSL
Sbjct: 325 HKGFKCLDVSTGRVYISRDVVFDENVFPFSKLHSNAGARLRSEILLLPSSL 375
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 135 bits (340), Expect = 3e-34
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 5/143 (3%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PSK + N +P E +NQKP+Y +RVFGCACWP+LR YN HK+ FRSK C+FLG+S
Sbjct: 654 RIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTH 713
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSLCHSNPQ--- 348
H+G+KCLD+ +G++Y+SR V+FDE++FP+ S + + LPS L + N
Sbjct: 714 HKGFKCLDVSSGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTASAG 773
Query: 349 -TNHAGPQINSCDQVPNDQSNSN 414
T+ P N+ +P+D SN
Sbjct: 774 GTHVVAPVANT--PLPSDNLISN 794
>gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 642
Score = 133 bits (335), Expect = 1e-33
Identities = 53/91 (58%), Positives = 75/91 (82%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PS+ + N SP E Y+QKP+Y +RVFGCACWPNL YNKHK++FRSK C+FLG+S
Sbjct: 19 RVPSRVIQNMSPLEKLYHQKPDYSSLRVFGCACWPNLIPYNKHKLEFRSKHCVFLGFSNM 78
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQK 273
H+G+KCL++ TG++Y+SR V+FDE++FP+ +
Sbjct: 79 HKGFKCLEVSTGRVYISRDVVFDETIFPFSE 109
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 132 bits (333), Expect = 3e-33
Identities = 52/91 (57%), Positives = 74/91 (81%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PS+ + N +P E ++QKP+Y +RVFGCACWPNLR YNKHK+ FRSK C FLG+S
Sbjct: 524 RVPSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGFSNM 583
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQK 273
H+G+KCLD+ +G++Y+SR V+FDE++FP+ +
Sbjct: 584 HKGFKCLDISSGRVYISRDVVFDENIFPFSE 614
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 132 bits (332), Expect = 4e-33
Identities = 52/89 (58%), Positives = 73/89 (82%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PS+ ++N SP E + QKP+Y +R+FGCACWPNLR YN HK+ FRSK C+FLG+S
Sbjct: 648 RVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTM 707
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPY 267
H+G+KCL++ TG+IY+SR V+FDE++FP+
Sbjct: 708 HKGFKCLEVSTGRIYISRDVVFDENIFPF 736
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 132 bits (332), Expect = 4e-33
Identities = 52/89 (58%), Positives = 73/89 (82%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PS+ ++N SP E + QKP+Y +R+FGCACWPNLR YN HK+ FRSK C+FLG+S
Sbjct: 681 RVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTM 740
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPY 267
H+G+KCL++ TG+IY+SR V+FDE++FP+
Sbjct: 741 HKGFKCLEVSTGRIYISRDVVFDENIFPF 769
>gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 600
Score = 131 bits (330), Expect = 4e-33
Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 25/170 (14%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
RLPS ++ ++SP+ + ++++P+Y F+++FGC+C+P LR YN+HKI RS+ CLFLGYS +
Sbjct: 328 RLPSSSIGHQSPYHLIHHKEPDYQFLKIFGCSCFPLLRPYNQHKIQPRSEECLFLGYSPT 387
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQ-----------KEASQSNPP----TPQTFS 315
H+GYKCL +G+IY+S+ V+F+ES FPYQ S SN P +P F+
Sbjct: 388 HKGYKCLS-KSGRIYISKDVVFNESRFPYQDLFVSKSVSSTPATSVSNIPSLIHSPSQFN 446
Query: 316 LPSSLCHSNPQTNHAGP-----QINSCDQVPNDQSNSNHV-----PLDIH 435
P S HS+P H+ P Q++S + PN + S + PL++H
Sbjct: 447 SPESSTHSDPDFLHSQPAPADSQLSSFNSSPNISAASGSISETARPLNLH 496
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 130 bits (328), Expect = 1e-32
Identities = 65/138 (47%), Positives = 84/138 (60%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PS+ L++ SP E KP+Y +RVFGCACWPNLR YNKHK+ FRS TC FLGYS
Sbjct: 652 RTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTL 711
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSLPSSLCHSNPQTNHA 360
H+G+KCLD TG++Y+SR V+FDE+ FP+ K +L L S P+
Sbjct: 712 HKGFKCLDPSTGRVYISRDVVFDETQFPFTKLHPNVGAKLRAEIALVPELAASLPR---G 768
Query: 361 GPQINSCDQVPNDQSNSN 414
QI+S P + + SN
Sbjct: 769 LQQISSVINTPENANVSN 786
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 130 bits (327), Expect = 2e-32
Identities = 51/91 (56%), Positives = 73/91 (80%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R+PS+ + N SP E ++QKP+Y +RV GCACWPNLR YN HK+ FRSK C+FLG+S
Sbjct: 335 RVPSRVIQNMSPLEKLHHQKPDYTSLRVLGCACWPNLRPYNNHKLQFRSKRCVFLGFSNM 394
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQK 273
H+G+KCL++ TG++Y+SR V+FDE++FP+ +
Sbjct: 395 HKGFKCLEVSTGRVYISRDVVFDETIFPFSE 425
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 130 bits (327), Expect = 2e-32
Identities = 64/157 (40%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK + ++P E ++QKP+Y +RVFGCACWPNLR YN K+ FRSK C+FLGYS
Sbjct: 645 RTPSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNL 704
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSLCHSNPQTNH 357
H+G+KCLD+ G++Y+SR V+FDE++FP+ S + + LP +L + + T
Sbjct: 705 HKGFKCLDVAAGRVYISRDVVFDENVFPFASLHSNAGARLRSEILLLPPTLLNPDDSTGR 764
Query: 358 AGPQINSCDQVPNDQ----------SNSNHVPLDIHT 438
G I + N + N++H+ LD +T
Sbjct: 765 -GTTIGDDHMLDNPEHTNTFAEENAENTDHIELDFNT 800
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 130 bits (327), Expect = 2e-32
Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK +N P E + +KPNY +R+FGCA WPNLR YNKHK+ FRSK C+FLGYS
Sbjct: 562 RTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCVFLGYSNL 621
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSL--PSSLCH----SN 342
H+G+KCL++ TG++YVSR V FDES+FP+ + S + SL PS + H
Sbjct: 622 HKGFKCLEIATGRVYVSRDVTFDESIFPFSELHSNAGARLRAEISLLPPSLVPHLSSLGG 681
Query: 343 PQTNH 357
Q NH
Sbjct: 682 EQNNH 686
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 130 bits (327), Expect = 2e-32
Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK +N P E + +KPNY +R+FGCA WPNLR YNKHK+ FRSK C+FLGYS
Sbjct: 616 RTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCVFLGYSNL 675
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSL--PSSLCH----SN 342
H+G+KCL++ TG++YVSR V FDES+FP+ + S + SL PS + H
Sbjct: 676 HKGFKCLEIATGRVYVSRDVTFDESIFPFSELHSNAGARLRAEISLLPPSLVPHLSSLGG 735
Query: 343 PQTNH 357
Q NH
Sbjct: 736 EQNNH 740
>gb|KYP59043.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 426
Score = 127 bits (320), Expect = 2e-32
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Frame = +1
Query: 4 LPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLSH 183
LP+ +L N SP++I +++ P+Y F++ FGC C+P LR YN+HK+DF+S CLFLGYS H
Sbjct: 161 LPTPSLQNISPYQILFHKPPDYNFLKTFGCGCYPLLRPYNQHKLDFKSHQCLFLGYSNQH 220
Query: 184 QGYKCLDLDTGKIYVSRHVIFDESLFPYQKEAS-----------QSNPPTPQTFSLPSSL 330
+GYKCL TGK Y+SRHV F+ES FPY+ + S+P P T +P+
Sbjct: 221 KGYKCLS-PTGKCYISRHVKFNESFFPYKHSPNPFLSSSILDIYTSHPSPPLTVLIPTVD 279
Query: 331 CHSNPQTNHAGPQINSCDQVPNDQSNS 411
+S+ N A N+ VPND +N+
Sbjct: 280 NNSHENCNIAS-TTNATIVVPNDDANT 305
>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
Length = 821
Score = 130 bits (326), Expect = 2e-32
Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK +N P E + +KPNY +R+FGCA WPNLR YNKHK+ FRSK C+FLGYS
Sbjct: 19 RTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCVFLGYSNL 78
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSL--PSSLCH----SN 342
H+G+KCL++ TG++YVSR V FDES+FP+ + S + SL PS + H
Sbjct: 79 HKGFKCLEIATGRVYVSRDVTFDESIFPFSELHSNAGACLRAEISLLPPSLVPHLSSLGG 138
Query: 343 PQTNH 357
Q NH
Sbjct: 139 EQNNH 143
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein, partial
[Zea mays]
Length = 969
Score = 129 bits (325), Expect = 3e-32
Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 14/155 (9%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R P+K LN +PFE ++++P+Y +R+FGC CWPNLR YN HK+ FRSK C+FLGYS
Sbjct: 501 RTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSL 560
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSL--PSSLCHSNPQT- 351
H+G+KCLD+ TG++YVSR V FDE+ FP+ S + L P L NP T
Sbjct: 561 HKGFKCLDVSTGRVYVSRDVTFDENFFPFASLHSNAGARLRSEIQLLSPDLL---NPATF 617
Query: 352 --------NHAGPQINSCDQVPND---QSNSNHVP 423
+HA +Q+ D Q + H P
Sbjct: 618 NSGVDSLIDHAADMSTDPNQISGDNSVQDQAEHTP 652
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 129 bits (325), Expect = 3e-32
Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 14/155 (9%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R P+K LN +PFE ++++P+Y +R+FGC CWPNLR YN HK+ FRSK C+FLGYS
Sbjct: 501 RTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSL 560
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPPTPQTFSL--PSSLCHSNPQT- 351
H+G+KCLD+ TG++YVSR V FDE+ FP+ S + L P L NP T
Sbjct: 561 HKGFKCLDVSTGRVYVSRDVTFDENFFPFASLHSNAGARLRSEIQLLSPDLL---NPATF 617
Query: 352 --------NHAGPQINSCDQVPND---QSNSNHVP 423
+HA +Q+ D Q + H P
Sbjct: 618 NSGVDSLIDHAADMSTDPNQISGDNSVQDQAEHTP 652
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 129 bits (324), Expect = 5e-32
Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +1
Query: 1 RLPSKALNNKSPFEIAYNQKPNYLFMRVFGCACWPNLRAYNKHKIDFRSKTCLFLGYSLS 180
R PSK + + +P P+Y +R+FGCACWPNLR YN+HK+ FRS C+FLGYS
Sbjct: 654 RTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNM 713
Query: 181 HQGYKCLDLDTGKIYVSRHVIFDESLFPYQKEASQSNPP-TPQTFSLPSSLCHSNPQTNH 357
H+G+KCLD+ TG+IY+SR V+FDE +FP+ + T + LP C +N T+H
Sbjct: 714 HKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDH 773
Query: 358 AGPQINSCDQVP 393
A S +P
Sbjct: 774 ANNLPGSSSPLP 785