BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00049055
         (1246 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]   271   1e-85
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   241   6e-82
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   255   6e-82
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   224   3e-77
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...   235   1e-76
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   211   4e-76
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   219   3e-74
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   214   5e-73
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   209   8e-73
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   234   1e-72
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...   235   7e-72
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   219   2e-71
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   228   6e-71
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   195   7e-71
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...   219   1e-70
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   219   1e-70
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]   206   2e-70
ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...   245   7e-70
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   222   2e-69
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   217   3e-68

>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score =  271 bits (693), Expect(2) = 1e-85
 Identities = 138/294 (46%), Positives = 174/294 (59%), Gaps = 35/294 (11%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQ----------------- 660
            CFVKDK + +ILL+G LKEGLYQLD+                                  
Sbjct: 356  CFVKDKKSREILLQGNLKEGLYQLDISKVSSNRQFVGFSEDTNVFLPHLATTPSTVNKQS 415

Query: 659  ---------QCNFASSNSSLD--------IWHHRLGHPCNSTFASVMKQLSIPFTC-NKL 534
                     Q N   S   ++        +WH RLGHPCN   + V+ +L I     N+L
Sbjct: 416  VAPSVGYSLQVNKIESTRCVEDNNTGVGHLWHQRLGHPCNKIVSLVLDRLGIKSKLQNEL 475

Query: 533  NFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDVWGPAATPSCDGYKYYIHFLDEFTRFT 354
            NFC AC +GK      P+  +K+  PF+LV+SDVW PA T SCDGYKYYI F+D FT +T
Sbjct: 476  NFCTACPLGKAKQFPLPTTINKTQVPFELVFSDVWEPAHTTSCDGYKYYIAFVDAFTNYT 535

Query: 353  WIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCP 174
            WI+P   KS+  S VLQFI+L++R+F +K+K  Q DWGGE+  L S  Q  GI+FRHPCP
Sbjct: 536  WIYPRQQKSQATSIVLQFIALVDRKFPTKLKCLQTDWGGEFHPLQSLLQKKGILFRHPCP 595

Query: 173  YTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFWWDAFSTATYLINLLPTSVLH 12
            + H QNG  ERKH+ IV++GLTLL+ + LP  FWW AFSTATYL+N LPT VLH
Sbjct: 596  HVHQQNGKVERKHRSIVEIGLTLLAKSQLPFTFWWHAFSTATYLLNRLPTPVLH 649



 Score = 75.1 bits (183), Expect(2) = 1e-85
 Identities = 35/91 (38%), Positives = 53/91 (58%)
 Frame = -1

Query: 1072 DNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXX 893
            + SW++DSGA+ H+T++   L +   Y G   + VGNG  L IS  G             
Sbjct: 261  NTSWFVDSGATHHMTTDSNTLDVFDHYSGTGNVVVGNGQTLDISSVGHTSFPSRKSSKSL 320

Query: 892  XXHKILCVPDITKNLLSISQFTKDNNVLVEF 800
                +L VP ITKNL+S+++FT+DN+V++EF
Sbjct: 321  HLANVLHVPQITKNLISVAKFTQDNDVILEF 351



 Score =  114 bits (286), Expect = 8e-24
 Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 8/259 (3%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHHR 609
            C +KD   ++ +  G   E +Y +++                 +C F+S +    +WH R
Sbjct: 990  CIIKDIQNDKTIFMGHRCENVYAINISKYDGH----------DRC-FSSMHDQSWLWHRR 1038

Query: 608  LGHPCNSTFASVMKQLSIPFTCNKLNF-----CEACKVGKLHSMHFPSIKSKSAA-PFDL 447
            LGH  N    S + +  +     K+NF     CEAC++GK     F +    S + P +L
Sbjct: 1039 LGH-ANMDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNKNFISTSRPLEL 1097

Query: 446  VYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSK 267
            ++ D++GP+ TPS  G  Y    +D+F+R+TW+  L  KSE +    +F + ++ +    
Sbjct: 1098 LHMDLFGPSRTPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFS 1157

Query: 266  IKAFQCDWGGEYRK--LSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHA 93
            I   + D G E+       +    GI      P T  QNG+ ERK++ + ++  T+L+  
Sbjct: 1158 ITCIRSDHGREFENFDFEEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNEN 1217

Query: 92   HLPLKFWWDAFSTATYLIN 36
            +LP  FW +A +T+ Y++N
Sbjct: 1218 NLPKYFWAEAVNTSCYVLN 1236


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  241 bits (615), Expect(2) = 6e-82
 Identities = 123/271 (45%), Positives = 163/271 (60%), Gaps = 7/271 (2%)
 Frame = -3

Query: 794  TFCFVKDKTTNQILLKGVLKEGLY-----QLDLXXXXXXXXXXXXXXSMQQCNFASSNSS 630
            T CFVKD +T  +L+ G LK GLY     QL L              S +    AS  S 
Sbjct: 444  TSCFVKDPSTRTVLMHGQLKGGLYVFDNTQLKLPLHNSSCFASTALPSKEPTVPASPTSP 503

Query: 629  LDIWHHRLGHPCNSTFASVMKQLSIPFTCNKLN--FCEACKVGKLHSMHFPSIKSKSAAP 456
              +WH+RLGHP +   + V+ + ++P   NK+    C  C +GK+H   F    S    P
Sbjct: 504  FTLWHNRLGHPSSHIVSLVLNKCNLPHL-NKIPSLICSXCCMGKIHKSSFLHSTSSYTKP 562

Query: 455  FDLVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQF 276
             +L+++D+WGPA+TPS  G++YYIHF+D ++RFTWI+ L  KSE +   L F S +E Q 
Sbjct: 563  LELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQL 622

Query: 275  SSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSH 96
              KIKA Q DWGGEYR  + +  S GI+ R  CPYTH QNG+ ERKH+HIV+ G+ LL+ 
Sbjct: 623  GHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQ 682

Query: 95   AHLPLKFWWDAFSTATYLINLLPTSVLHNSS 3
            A LP K+W +AF T+ YLIN LPT VL N S
Sbjct: 683  ASLPFKYWDEAFRTSVYLINRLPTPVLKNKS 713



 Score = 92.8 bits (229), Expect(2) = 6e-82
 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVG---LDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPV 1076
            +CG+  H+  +C+ RFD SF G   L  +                          TT  +
Sbjct: 288  LCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTAEI 347

Query: 1075 V-DNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXX 899
            + DN+WY DSGA+ H+T  L NL  +S +   D++ VGNG  L I H G           
Sbjct: 348  IQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPS 407

Query: 898  XXXXHK-ILCVPDITKNLLSISQFTKDNNVLVEFHALS 788
                 K +L VP+ITKNLLS+S+F  DN+V  EFH  S
Sbjct: 408  KTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTS 445


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  255 bits (651), Expect(2) = 6e-82
 Identities = 125/263 (47%), Positives = 164/263 (62%), Gaps = 1/263 (0%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHHR 609
            CFVKDK T +ILL+G +K+GLYQL                           S  + WH +
Sbjct: 323  CFVKDKLTGRILLEGKIKDGLYQLPGGSTSTNKRPHVFF------------SIKETWHRK 370

Query: 608  LGHPCNSTFASVMKQLSIPFT-CNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDV 432
            LGHP +     VMK  +I  + C    FCEAC+ GK H++ F +  S +  P DLV+SDV
Sbjct: 371  LGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDV 430

Query: 431  WGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQ 252
            WGPA   S  G+KYY+ FLD+++RFTWI+PL  KS+V+   +QF +L+E QF+ +IK  Q
Sbjct: 431  WGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQ 490

Query: 251  CDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFW 72
            CD GGE++ LS      GI  R  CPYT AQNG  ERKH+H+V+ GLTLL+ A +PL +W
Sbjct: 491  CDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYW 550

Query: 71   WDAFSTATYLINLLPTSVLHNSS 3
            W+AFSTA +LIN LPT V+ N S
Sbjct: 551  WEAFSTAVFLINRLPTQVIKNKS 573



 Score = 79.0 bits (193), Expect(2) = 6e-82
 Identities = 52/159 (32%), Positives = 71/159 (44%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +C K  H AS C+ RF+ +++G ++                           +   V D 
Sbjct: 179  VCCKPGHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNFNAYVA-------SPSTVEDL 231

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
             WY DSGAS HVT +   +   +   G   LTVGNG+ L I   G               
Sbjct: 232  DWYFDSGASNHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDSSLDTQQKSLNLKD 291

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHALSVLSRTK 770
              IL VP ITKNLLSIS+ T DN++ VEFH ++   + K
Sbjct: 292  --ILYVPKITKNLLSISKLTFDNDIYVEFHDVACFVKDK 328


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  224 bits (572), Expect(2) = 3e-77
 Identities = 114/269 (42%), Positives = 159/269 (59%), Gaps = 9/269 (3%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASS-------NSS 630
            CFVKD+ T  +L+ G +++GLY  D                    +  SS       +S+
Sbjct: 461  CFVKDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSLSST 520

Query: 629  LDIWHHRLGHPCNSTFASVMKQLSIPFTCNKL--NFCEACKVGKLHSMHFPSIKSKSAAP 456
             D+WH RLGHP  +T  +V+ + ++    NK+  NFC +C +GK+H   F    +    P
Sbjct: 521  FDLWHKRLGHPSAATIKNVLSKCNVAHI-NKMDSNFCSSCCLGKIHRFPFSLSHTTYTKP 579

Query: 455  FDLVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQF 276
             +L++ D+WGP    S  GY+YYIHF+D F+RF+WIF L +KSE   T + F + +E QF
Sbjct: 580  LELIHLDLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQF 639

Query: 275  SSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSH 96
              KIK+ Q DWGGE+R   S+    GIV R  CP+T  QNG+ ERKH+ IV+ GLTLL  
Sbjct: 640  DLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHT 699

Query: 95   AHLPLKFWWDAFSTATYLINLLPTSVLHN 9
            A LPLKFW ++F T  YL N LPT++LH+
Sbjct: 700  ASLPLKFWDESFRTVVYLSNRLPTAILHH 728



 Score = 94.0 bits (232), Expect(2) = 3e-77
 Identities = 55/151 (36%), Positives = 75/151 (49%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H+ ++C+ RFD +F    N SS                        T+    D+
Sbjct: 312  LCGKIGHVVAQCYYRFDHTFQVPQNLSS----RNSSPRAYYSFSPQVNGVIPTSEVFSDD 367

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WY DSGAS HVT    NL   + + G +++ VGNG+ LSI H G               
Sbjct: 368  NWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSPFSSKPLLL 427

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHA 794
            + +L VP ITKNLLS+S+F KDN V  EFH+
Sbjct: 428  NHLLHVPSITKNLLSVSKFAKDNKVFFEFHS 458


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score =  235 bits (599), Expect(2) = 1e-76
 Identities = 122/295 (41%), Positives = 167/295 (56%), Gaps = 36/295 (12%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCN----------FAS 642
            FCFVKDK  N ++L+G  ++ LY+L L                              F+S
Sbjct: 448  FCFVKDKMKNVVILQGKAEKSLYRLLLVSSNKTFITPSGQSYSANVESTEPLTHLSMFSS 507

Query: 641  SNS-----------------------SLDIWHHRLGHPCNSTFASVMKQLSIPFTCN--- 540
             +S                       S  ++H RLGHP +     V+K  S   T N   
Sbjct: 508  VSSDFKNKTNCLHTSAVPCINSECLLSTSVFHQRLGHPSSHVLNHVIKTCSFVKTINGNR 567

Query: 539  KLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDVWGPAATPSCDGYKYYIHFLDEFTR 360
              + C+ACK+GK+H +HF   ++K+  P +++++D+WGP+   S  GY+YY+ F+D+ TR
Sbjct: 568  TFDSCDACKMGKMHRLHFSVTETKTKFPLEILHTDLWGPSPVISPQGYRYYVSFVDDCTR 627

Query: 359  FTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHP 180
            FTWIFPL +K E       F + IE+QFS  IK  Q DWGGE+R   ++  + GI FRH 
Sbjct: 628  FTWIFPLKTKDETLPVFKIFKTQIEKQFSRPIKCLQSDWGGEFRSFVNYLLAEGIQFRHL 687

Query: 179  CPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFWWDAFSTATYLINLLPTSVL 15
            CPYTH QNG+ ERKH+HI +LGLTLL+ A +PLKFWWD+F TATY+IN LPT VL
Sbjct: 688  CPYTHNQNGLVERKHRHITELGLTLLAQAAMPLKFWWDSFHTATYIINRLPTPVL 742



 Score = 81.3 bits (199), Expect(2) = 1e-76
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
 Frame = -1

Query: 1072 DNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTG----XXXXXXXXX 905
            D +WY+DSGA+ H+T+++ N+ +   + G  KL VGNG+ L I+H G             
Sbjct: 350  DANWYLDSGATHHLTNDMNNMHVSESFTGISKLIVGNGAGLDITHLGSAVLKMHENEDNA 409

Query: 904  XXXXXXHKILCVPDITKNLLSISQFTKDNNVLVEF 800
                  + IL VP ITKNL+SIS+ TKDNN++VEF
Sbjct: 410  LSILKLNDILLVPQITKNLISISRLTKDNNIVVEF 444


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  211 bits (536), Expect(2) = 4e-76
 Identities = 108/269 (40%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLD----LXXXXXXXXXXXXXXSMQQCNFASSNSSLD 624
            +C VK + + + LL+G LK GLY  D    L              +        +  S D
Sbjct: 421  YCLVKSQDSKETLLRGNLKNGLYVFDEVQILKPDVYEHTVDSVPTNRTTLYVQRTRKSYD 480

Query: 623  IWHHRLGHPCNSTFASVMKQLSIPFTCNKLN--FCEACKVGKLHSMHFPSIKSKSAAPFD 450
            +WH+RL H       +VMK  ++P   N  +   C++C +GK H++ F    +   +P +
Sbjct: 481  VWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLE 540

Query: 449  LVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSS 270
            LVYSDVWGP+   S +G++YY+HF D F+++TWI+ + +KSE     + F S++E QF  
Sbjct: 541  LVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGH 600

Query: 269  KIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAH 90
            KIK FQ D G E+  L+  F   GI  R  CP++H QNG  ERKH+HI ++GLTLLS + 
Sbjct: 601  KIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSSG 660

Query: 89   LPLKFWWDAFSTATYLINLLPTSVLHNSS 3
            LP  FW DAFSTA ++IN LPT +L + S
Sbjct: 661  LPHIFWSDAFSTAIHVINRLPTPILGHKS 689



 Score =  103 bits (258), Expect(2) = 4e-76
 Identities = 55/150 (36%), Positives = 76/150 (50%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H+A  C+ R+D  +      + P                       +   V D+
Sbjct: 275  VCGKIGHIAFHCWHRYDQQY------TEPNLNHNTNVYNPGNQQQMQAMIAGSQNMVYDD 328

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
             WY DSGA+ H+TS+L NL  ++ Y G DK+ +GNG  + I+HTG               
Sbjct: 329  QWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTSFFHTPMSSKIFTL 388

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFH 797
             ++L VP ITKNLLS+S+F KDNNV VEFH
Sbjct: 389  KELLHVPHITKNLLSVSKFCKDNNVYVEFH 418


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  219 bits (558), Expect(2) = 3e-74
 Identities = 114/266 (42%), Positives = 160/266 (60%), Gaps = 5/266 (1%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKG-VLKEGLYQLD--LXXXXXXXXXXXXXXSMQQCNFASSNS-SLDI 621
            C VK + TN++LL+G V  +GLY+    L               +   N A+++  S   
Sbjct: 441  CLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSFAT 500

Query: 620  WHHRLGHPCNSTFASVMKQLSIPFTCN-KLNFCEACKVGKLHSMHFPSIKSKSAAPFDLV 444
            WH RLGHP       V +  +I    N K NFC  C +GK H +     ++    PFDLV
Sbjct: 501  WHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLV 560

Query: 443  YSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKI 264
            YSD+WGPA   S  GY+YY+ F+D  TRFTWI+ L SK++ ++   QF ++++ Q+   I
Sbjct: 561  YSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPI 620

Query: 263  KAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLP 84
            KA Q DWGGEYR  +++   +GI  R  CP+TH QNG+ ERKH+HIV+LGLTL++ A LP
Sbjct: 621  KALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELP 680

Query: 83   LKFWWDAFSTATYLINLLPTSVLHNS 6
            ++FW  +F TA YLIN LP+S + N+
Sbjct: 681  MQFWDHSFLTAVYLINRLPSSSIQNA 706



 Score = 89.0 bits (219), Expect(2) = 3e-74
 Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +C +  H+AS C+ RFD ++V      +P                       T     +N
Sbjct: 302  VCHRYGHVASACYYRFDETYVPSSPLEAPAYPSNNQH---------------TNPGACNN 346

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTG-XXXXXXXXXXXXXX 890
            +WY DSGAS HVT+   N+   +P+ G D++ VGNG  L I+ TG               
Sbjct: 347  NWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFA 406

Query: 889  XHKILCVPDITKNLLSISQFTKDNNVLVEFH 797
             + +L VP ITKNL+S+SQF+KDN+V  EFH
Sbjct: 407  LNNLLFVPSITKNLISVSQFSKDNSVYFEFH 437


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  214 bits (545), Expect(2) = 5e-73
 Identities = 107/263 (40%), Positives = 159/263 (60%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHH 612
            F FVKD+ T +ILL+G L+ GLY+                    + +  S  ++  +WH 
Sbjct: 467  FFFVKDQVTKKILLQGSLEHGLYRFPARFVPSPAAFVSSSY--DRSSNLSLTTTTTLWHS 524

Query: 611  RLGHPCNSTFASVMKQLSIPFTCNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDV 432
            RLGHP ++    ++   +I   C+K N C AC+  K H + F    S+++ P  L+++D+
Sbjct: 525  RLGHPADNILKHILTSCNISHQCHKNNVCCACQFAKSHKLPFNVXVSRASHPLALLHADL 584

Query: 431  WGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQ 252
            WGP + PS  G +Y+I F+D+F+RF+WI+PL SK +  S  ++F SL+E QF+S+I+  +
Sbjct: 585  WGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQALSVFIKFKSLVENQFNSRIQCLR 644

Query: 251  CDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFW 72
             D GGE++  SS+  + GI  +  CPYT  QNG  ERK +HI++ GL LL+ A LP KFW
Sbjct: 645  SDNGGEFKAFSSYLATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFKFW 704

Query: 71   WDAFSTATYLINLLPTSVLHNSS 3
              AF TA +LIN LPT VL+  S
Sbjct: 705  LYAFHTAIFLINRLPTKVLNYQS 727



 Score = 90.1 bits (222), Expect(2) = 5e-73
 Identities = 51/150 (34%), Positives = 72/150 (48%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H   +C+ RFD++F G +    P                       +T  + D 
Sbjct: 323  LCGKFGHTVVRCYHRFDINFQGYN----PNMDTVQTNKPNAKNQVQAMMASPST--ISDE 376

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +W+ D+GA+ H++  +  LS   PY G+DK+ VGNG  L I HTG               
Sbjct: 377  AWFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTG--TTFFPSSSKTFQL 434

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFH 797
             ++L VPDI  NL+S+SQF  DNN   EFH
Sbjct: 435  RQVLHVPDIATNLISVSQFCADNNTFFEFH 464


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  209 bits (531), Expect(2) = 8e-73
 Identities = 103/261 (39%), Positives = 150/261 (57%)
 Frame = -3

Query: 785  FVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHHRL 606
            F+KD  T ++L +G L+ GLY+  +              S  QC+  +  +  ++WHHRL
Sbjct: 433  FLKDLHTKRVLAQGKLENGLYKFPVISNKKTAYVGITNDSTFQCS--NIENKRELWHHRL 490

Query: 605  GHPCNSTFASVMKQLSIPFTCNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDVWG 426
            GH        +M   ++     K   C +C++ K H +        ++ P +LVY+D+WG
Sbjct: 491  GHAATDIVTRIMHNCNVSCGKYKATVCSSCQLAKSHRLPTHLSSFHASKPLELVYTDIWG 550

Query: 425  PAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQCD 246
            PA+  S  G KY+I F+D+++R+TW++ L SK +       F   +E QF +KIK  Q D
Sbjct: 551  PASVTSTSGAKYFILFVDDYSRYTWLYLLQSKDQALPIFKXFKLQVENQFEAKIKCLQXD 610

Query: 245  WGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFWWD 66
             GGE+R   S  Q  GI+ R  CPY  +QNG  ERKH+H+V+ GL LL+HA LPLKFW  
Sbjct: 611  NGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAGLPLKFWSY 670

Query: 65   AFSTATYLINLLPTSVLHNSS 3
            AF TAT+LIN +P+ VL N+S
Sbjct: 671  AFQTATFLINRMPSKVLXNAS 691



 Score = 94.7 bits (234), Expect(2) = 8e-73
 Identities = 53/151 (35%), Positives = 80/151 (52%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H    C+ RFD++F    N+++                       A +    D+
Sbjct: 289  LCGKFGHTVQVCYHRFDITFQSTQNNTT--------GVSNSGNSNXMPAMVAXSNNXADD 340

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WY+DSGAS H+T  + NL+  +PY G DK+T+GNG  L+IS+T                
Sbjct: 341  NWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGKHLTISNT--XFTRLFSNPHSFQL 398

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHA 794
             K+  VP I+ NL+S+++F  DNN L+EFH+
Sbjct: 399  KKVFHVPFISANLISVAKFCSDNNALIEFHS 429


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  234 bits (598), Expect(2) = 1e-72
 Identities = 123/266 (46%), Positives = 167/266 (62%), Gaps = 3/266 (1%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHH 612
            + F+KD+ T + LLKG     LY L                S++Q  +++   SLD WHH
Sbjct: 410  YFFLKDQITRKTLLKGRSWRRLYPLP-------------HSSLKQA-YSAIKLSLDRWHH 455

Query: 611  RLGHPCNSTFASVMKQLSIPFTCNKLN---FCEACKVGKLHSMHFPSIKSKSAAPFDLVY 441
            RLGHP  +T   V+ + S+P  C+ L+    C AC+  K H + FP   S S  P +LV+
Sbjct: 456  RLGHPSITTVKQVVNKFSLP--CSDLSSESVCNACQQAKSHQLPFPISSSVSKHPLELVF 513

Query: 440  SDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIK 261
            SDVWGPA   S    KYY+ F+D+F++FTWI+ +  KS+V+    +F  ++ERQF  KI 
Sbjct: 514  SDVWGPAPE-SVGRKKYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQVMVERQFDRKIL 572

Query: 260  AFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPL 81
            A Q DWGGEY+ L+S F  +GIV    CP+TH QNG  ERKH+HIV++GL+LLSHA +PL
Sbjct: 573  AMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPL 632

Query: 80   KFWWDAFSTATYLINLLPTSVLHNSS 3
            KFW +AF  ATYLIN +P+ V+HN S
Sbjct: 633  KFWDEAFQVATYLINRVPSRVIHNIS 658



 Score = 68.2 bits (165), Expect(2) = 1e-72
 Identities = 41/150 (27%), Positives = 66/150 (44%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +C K  H A+ C+ R+D  +V                                +Y V D 
Sbjct: 280  VCFKRGHTAADCWYRYDEDYV--------------------PDAKHVAAAAVNSYGV-DT 318

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WYID+GA+ HVT EL  L+++  Y+G +++   +G+ + ISH G               
Sbjct: 319  NWYIDTGATDHVTGELDKLTMKEKYNGGEQIHTASGAGMDISHIG-HAIVHNPNSRNIHL 377

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFH 797
              +L VP   KNL+S+ +   DN+  +E H
Sbjct: 378  RNVLYVPQAKKNLVSVHRLVNDNSAFLELH 407


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score =  235 bits (599), Expect = 7e-72
 Identities = 115/252 (45%), Positives = 152/252 (60%), Gaps = 1/252 (0%)
 Frame = -3

Query: 755 LLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHHRLGHPCNSTFAS 576
           +L+G LK+GLYQL                    C + S   S   WH RLGHP N     
Sbjct: 3   ILRGTLKDGLYQL-------------LRTERDPCAYVSVKES---WHRRLGHPNNKFLDR 46

Query: 575 VMKQLSIPFT-CNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDVWGPAATPSCDG 399
           V+K  ++  +  +  NFCEAC+ GK+H + F +  S +   F+LV++DVWGPA   S  G
Sbjct: 47  VLKSCNVKLSPSDHFNFCEACQYGKMHFLPFKTSSSHAKEIFELVHTDVWGPAPVTSPSG 106

Query: 398 YKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQCDWGGEYRKLS 219
           +KYY+HFLD+F+RFTWI+PL  KS+      QF ++ E  F+ +IK  QCD GGEY+ + 
Sbjct: 107 FKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAENLFNKRIKTIQCDGGGEYKTVQ 166

Query: 218 SHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFWWDAFSTATYLI 39
           +H    GI FR  CPYT  QNG  ERKH+HI +  LTLL+ A +PL +WW+AFSTA YLI
Sbjct: 167 NHAIEAGIQFRMSCPYTSQQNGRAERKHRHITEFSLTLLAQAKMPLHYWWEAFSTAVYLI 226

Query: 38  NLLPTSVLHNSS 3
           N LP+ V  N S
Sbjct: 227 NRLPSLVTQNES 238


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  219 bits (558), Expect(2) = 2e-71
 Identities = 114/266 (42%), Positives = 160/266 (60%), Gaps = 5/266 (1%)
 Frame = -3

Query: 788 CFVKDKTTNQILLKG-VLKEGLYQLD--LXXXXXXXXXXXXXXSMQQCNFASSNS-SLDI 621
           C VK + TN++LL+G V  +GLY+    L               +   N A+++  S   
Sbjct: 106 CLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSFAT 165

Query: 620 WHHRLGHPCNSTFASVMKQLSIPFTCN-KLNFCEACKVGKLHSMHFPSIKSKSAAPFDLV 444
           WH RLGHP       V +  +I    N K NFC  C +GK H +     ++    PFDLV
Sbjct: 166 WHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLV 225

Query: 443 YSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKI 264
           YSD+WGPA   S  GY+YY+ F+D  TRFTWI+ L SK++ ++   QF ++++ Q+   I
Sbjct: 226 YSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPI 285

Query: 263 KAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLP 84
           KA Q DWGGEYR  +++   +GI  R  CP+TH QNG+ ERKH+HIV+LGLTL++ A LP
Sbjct: 286 KALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELP 345

Query: 83  LKFWWDAFSTATYLINLLPTSVLHNS 6
           ++FW  +F TA YLIN LP+S + N+
Sbjct: 346 MQFWDHSFLTAVYLINRLPSSSIQNA 371



 Score = 79.7 bits (195), Expect(2) = 2e-71
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
 Frame = -1

Query: 1072 DNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTG-XXXXXXXXXXXX 896
            +N+WY DSGAS HVT+   N+   +P+ G D++ VGNG  L I+ TG             
Sbjct: 10   NNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQ 69

Query: 895  XXXHKILCVPDITKNLLSISQFTKDNNVLVEFH 797
               + +L VP ITKNL+S+SQF+KDN+V  EFH
Sbjct: 70   FALNNLLFVPSITKNLISVSQFSKDNSVYFEFH 102


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  228 bits (580), Expect(2) = 6e-71
 Identities = 122/266 (45%), Positives = 165/266 (62%), Gaps = 7/266 (2%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVL-KEGLYQ---LDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDI 621
            CFVK + TN+ILL+GV+  +GLY    L+L                   +  +  SS   
Sbjct: 360  CFVKSQVTNEILLQGVVGSDGLYSFSNLELQGPSVLVSSSMASSVDPAVSAFAIPSSHTS 419

Query: 620  WHHRLGHPCNSTFASVMKQLSI-PFTCNKLNFCEACKVGKLHSMHFPSIKSKS--AAPFD 450
            WH RL HP +     V+   +I P   N   FC +C VGK H +  PS+ S+S  +AP D
Sbjct: 420  WHTRLSHPNSHVLKLVLNHCNIAPSNRNVSEFCSSCCVGKSHRL--PSLVSESVYSAPLD 477

Query: 449  LVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSS 270
            L+++D+WGP+   S  GY YY+ F+D F++FTWI+PL SKS+  S   QF +++E Q ++
Sbjct: 478  LIFTDLWGPSHVVSHSGYVYYVSFIDAFSKFTWIYPLKSKSDTLSVFQQFKAMVELQLNT 537

Query: 269  KIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAH 90
            KIK+ Q DWGGEYR  ++   + GI  R  CP+TH QNG+ ERKH+HIVD+G+TLL HA 
Sbjct: 538  KIKSIQSDWGGEYRSFTAFLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITLLHHAS 597

Query: 89   LPLKFWWDAFSTATYLINLLPTSVLH 12
            LPL FW  AFSTA YLIN LPT+ L+
Sbjct: 598  LPLTFWDYAFSTAVYLINRLPTASLN 623



 Score = 69.7 bits (169), Expect(2) = 6e-71
 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1075 VDNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXX 896
            V+++W  DSGAS HVT E  N+     + G D++ +GNG  L I+ +G            
Sbjct: 263  VNSTWIPDSGASFHVTGEPQNVHQLGHFDGPDQIFIGNGQGLHINGSGFSSFLSPIKSNF 322

Query: 895  XXXHK-ILCVPDITKNLLSISQFTKDNNVLVEFHA 794
                  +L VP ITKNLLS+S+F KDN+V  EFH+
Sbjct: 323  CFKLNDLLHVPSITKNLLSVSKFAKDNSVYFEFHS 357


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  195 bits (496), Expect(2) = 7e-71
 Identities = 96/261 (36%), Positives = 144/261 (55%)
 Frame = -3

Query: 785  FVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHHRL 606
            FVKD  T  +L +G L+ GLY+  +              +      ++  +  ++WH+RL
Sbjct: 436  FVKDLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRL 495

Query: 605  GHPCNSTFASVMKQLSIPFTCNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYSDVWG 426
            GH      + VM   ++     K   C  C++ K H +        ++ P +LVY+D+WG
Sbjct: 496  GHASFDIVSKVMNTCNVASGKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLELVYTDIWG 555

Query: 425  PAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKAFQCD 246
            PA+  S  G +Y+I F+D+++R+TW + L +K +       F   +E QF +KIK  Q D
Sbjct: 556  PASIKSTSGARYFILFVDDYSRYTWFYSLQTKDQALPIFKXFKLQMENQFDTKIKCLQSD 615

Query: 245  WGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLKFWWD 66
             GGE+R  +S  Q++GI  R  CPY   QNG  ERKH+H+V+ GL LLSHA LP+K+W  
Sbjct: 616  NGGEFRSFTSFLQAVGIAHRFSCPYNSXQNGRVERKHRHVVETGLALLSHASLPMKYWHY 675

Query: 65   AFSTATYLINLLPTSVLHNSS 3
            AF T T+LIN +P+ VL   S
Sbjct: 676  AFQTXTFLINRMPSKVLEYDS 696



 Score =  101 bits (252), Expect(2) = 7e-71
 Identities = 57/151 (37%), Positives = 78/151 (51%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H A  C+ RFD+SF G   + S                       + +    D 
Sbjct: 291  LCGKFGHTAQICYHRFDISFQGGQTTIS-------HSLNNGNQNNIPAMVASASNNPADE 343

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            SWY+DSGAS H+T  LGNL+  SPY G DK+T+GNG  LSIS+ G               
Sbjct: 344  SWYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNGKHLSISNIG--SKQLHSHTHSFRL 401

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHA 794
             K+  VP I+ NL+S+++F  +NN L+EFH+
Sbjct: 402  KKVFHVPFISANLISVAKFCSENNALIEFHS 432


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score =  219 bits (558), Expect(2) = 1e-70
 Identities = 117/266 (43%), Positives = 165/266 (62%), Gaps = 7/266 (2%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVL-KEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSN---SSLDI 621
            C VK + TN++LL+GV+  +GLY                   +   NF  ++   SS  +
Sbjct: 393  CLVKSQDTNEVLLQGVVGADGLYSFP----------HLKLQVLDSFNFNKNSDVSSSSTM 442

Query: 620  WHHRLGHPCNSTFASVMKQLSI-PFTCNKLNFCEACKVGKLHSMHFPSIKSKS--AAPFD 450
            WH RLGHP +     V+ Q ++     +   FC +C VGK  S   PS  S++  +AP D
Sbjct: 443  WHTRLGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGK--SRRLPSSASQTIYSAPLD 500

Query: 449  LVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSS 270
            ++++D+WGP+   S  GY YY+ F+D F+++TWI+PL SK+E  S   QF ++ E QF++
Sbjct: 501  VIFTDLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNT 560

Query: 269  KIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAH 90
            KIK+ Q DWGGEYR  +S   + GI  R  CP+TH QNG+ ERKH+HIV++GLTLL HA 
Sbjct: 561  KIKSVQSDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHAS 620

Query: 89   LPLKFWWDAFSTATYLINLLPTSVLH 12
            LPLKFW  AF+TA YLIN LP++ L+
Sbjct: 621  LPLKFWDFAFTTAVYLINRLPSAALN 646



 Score = 77.4 bits (189), Expect(2) = 1e-70
 Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            IC K  H A+ CF R DV++   ++                           T+ P  ++
Sbjct: 258  ICFKYGHTANVCFYRADVNYQPAES-------------------LVLAMVANTSQPGANS 298

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTG-XXXXXXXXXXXXXX 890
            SW  DSGAS HVT E  N+     + G D++ +GNG  L I+ +G               
Sbjct: 299  SWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNGQGLQINGSGTSIFISPINSQFKFH 358

Query: 889  XHKILCVPDITKNLLSISQFTKDNNVLVEFHALSVLSRTK 770
             + +L VP ITKNLLS+S+F KDN V  EFHA   L +++
Sbjct: 359  LNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVKSQ 398


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  219 bits (558), Expect(2) = 1e-70
 Identities = 117/266 (43%), Positives = 165/266 (62%), Gaps = 7/266 (2%)
 Frame = -3

Query: 788  CFVKDKTTNQILLKGVL-KEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSN---SSLDI 621
            C VK + TN++LL+GV+  +GLY                   +   NF  ++   SS  +
Sbjct: 314  CLVKSQDTNEVLLQGVVGADGLYSFP----------HLKLQVLDSFNFNKNSDVSSSSTM 363

Query: 620  WHHRLGHPCNSTFASVMKQLSI-PFTCNKLNFCEACKVGKLHSMHFPSIKSKS--AAPFD 450
            WH RLGHP +     V+ Q ++     +   FC +C VGK  S   PS  S++  +AP D
Sbjct: 364  WHTRLGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGK--SRRLPSSASQTIYSAPLD 421

Query: 449  LVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSS 270
            ++++D+WGP+   S  GY YY+ F+D F+++TWI+PL SK+E  S   QF ++ E QF++
Sbjct: 422  VIFTDLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNT 481

Query: 269  KIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAH 90
            KIK+ Q DWGGEYR  +S   + GI  R  CP+TH QNG+ ERKH+HIV++GLTLL HA 
Sbjct: 482  KIKSVQSDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHAS 541

Query: 89   LPLKFWWDAFSTATYLINLLPTSVLH 12
            LPLKFW  AF+TA YLIN LP++ L+
Sbjct: 542  LPLKFWDFAFTTAVYLINRLPSAALN 567



 Score = 77.4 bits (189), Expect(2) = 1e-70
 Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            IC K  H A+ CF R DV++   ++                           T+ P  ++
Sbjct: 179  ICFKYGHTANVCFYRADVNYQPAES-------------------LVLAMVANTSQPGANS 219

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTG-XXXXXXXXXXXXXX 890
            SW  DSGAS HVT E  N+     + G D++ +GNG  L I+ +G               
Sbjct: 220  SWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNGQGLQINGSGTSIFISPINSQFKFH 279

Query: 889  XHKILCVPDITKNLLSISQFTKDNNVLVEFHALSVLSRTK 770
             + +L VP ITKNLLS+S+F KDN V  EFHA   L +++
Sbjct: 280  LNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVKSQ 319


>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score =  206 bits (523), Expect(2) = 2e-70
 Identities = 105/274 (38%), Positives = 154/274 (56%), Gaps = 13/274 (4%)
 Frame = -3

Query: 785  FVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSL-----DI 621
            FVKD  T ++L +G L+ GLY+  +               +    F S NSS+      +
Sbjct: 331  FVKDLHTKKVLAQGKLENGLYRFPVLNSKKVAFVGA----INSSTFYSHNSSIFDNKVKL 386

Query: 620  WHHRLGHPCNSTFASVMKQLSIPFTCNK--------LNFCEACKVGKLHSMHFPSIKSKS 465
            WHHRLGH   +    +M+  ++ F  NK           C +C++ K H +      S +
Sbjct: 387  WHHRLGHASTNIVTQIMQSCNVSFEKNKNTVCSTVCSTVCSSCQLAKSHRLPTHLSLSCA 446

Query: 464  AAPFDLVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIE 285
            + P +LV++D+WGPA+  S  G +Y+I FLD+++R+TW +PL +K +      +F   +E
Sbjct: 447  SKPLELVHTDLWGPASVKSTSGARYFILFLDDYSRYTWFYPLQTKDQALPAFKKFKLQVE 506

Query: 284  RQFSSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTL 105
             QF +KIK  Q D GGE+R   +  Q  GI  R  CPY  AQN   ERKH+H+V+ GL L
Sbjct: 507  NQFDAKIKCLQSDNGGEFRSFKTFLQQTGIFHRFSCPYNSAQNERVERKHRHVVETGLAL 566

Query: 104  LSHAHLPLKFWWDAFSTATYLINLLPTSVLHNSS 3
            L+HA LP++FW  AF TAT+LIN +P+ VL N+S
Sbjct: 567  LAHASLPMEFWQYAFQTATFLINRMPSKVLQNNS 600



 Score = 89.7 bits (221), Expect(2) = 2e-70
 Identities = 50/153 (32%), Positives = 79/153 (51%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +CGK  H    C+ +FD+S+    +S++                        ++  + ++
Sbjct: 187  LCGKFGHTVQICYHKFDISYQSSQSSNTSPSNASNPNSIPAMVA--------SSNNLAED 238

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WY+DSGA+ H+T  +GNL+  SPY G DK+T+GNG  LSIS+TG               
Sbjct: 239  TWYLDSGANHHLTQSVGNLTSSSPYTGIDKVTIGNGKHLSISNTG--SHRLLSDSRSFHL 296

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHALS 788
             K+  V  I+ NL+S+++F  DNN L EF + S
Sbjct: 297  KKVFHVHFISANLISVAKFYLDNNALFEFRSNS 329


>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score =  245 bits (626), Expect = 7e-70
 Identities = 113/222 (50%), Positives = 150/222 (67%), Gaps = 5/222 (2%)
 Frame = -3

Query: 653  NFASSNSSLD--IWHHRLGHPCNSTFASVMKQLSIPFTCNKLN---FCEACKVGKLHSMH 489
            +FAS N ++D  + H R+GHP       +MK L   F  +K +   FC+AC++GK H  H
Sbjct: 445  HFASCNKTVDYNLLHKRMGHPITHALKQIMKCLDSTFVLSKDSKPQFCDACQLGKCHMQH 504

Query: 488  FPSIKSKSAAPFDLVYSDVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTV 309
            FPSI++    P +L+++D+WGPA   S  GY YY+  LD++TR+TWIFPL +KS+  S  
Sbjct: 505  FPSIETSITQPLELLHADLWGPAPITSSQGYSYYLSILDDYTRYTWIFPLTTKSKTLSAF 564

Query: 308  LQFISLIERQFSSKIKAFQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQH 129
            + F ++IE   + +IK  Q DWGGE+R   S+    GI FRHPCPY H QN   ERKH+H
Sbjct: 565  IDFKNMIENCLNLRIKCLQTDWGGEFRPFVSYLSEQGIQFRHPCPYIHHQNRKIERKHRH 624

Query: 128  IVDLGLTLLSHAHLPLKFWWDAFSTATYLINLLPTSVLHNSS 3
            IV+ GLTLL+ AHLPLKFWW+AF TATYLIN LPT +L+N S
Sbjct: 625  IVETGLTLLAQAHLPLKFWWNAFHTATYLINRLPTPILNNKS 666



 Score = 70.5 bits (171), Expect(2) = 3e-13
 Identities = 37/94 (39%), Positives = 52/94 (55%)
 Frame = -1

Query: 1078 VVDNSWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXX 899
            + D +WY+DSG + H+  + G LS  S Y G + L VGNG  L I + G           
Sbjct: 259  IADPAWYLDSGETNHIAQDAGMLSKYSTYRGCEILHVGNGMGLPIHNVG-SVAIKTLSTK 317

Query: 898  XXXXHKILCVPDITKNLLSISQFTKDNNVLVEFH 797
                + +L VP ITKNL+S+S+   DNNV +EF+
Sbjct: 318  PIYLNHVLHVPSITKNLISVSKLLADNNVFIEFY 351



 Score = 33.9 bits (76), Expect(2) = 3e-13
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 788 CFVKDKTTNQILLKGVLKEGLYQL 717
           CFVKDK +   LLKG+ + GLYQ+
Sbjct: 355 CFVKDKNSRITLLKGIARGGLYQV 378


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  222 bits (566), Expect(2) = 2e-69
 Identities = 113/265 (42%), Positives = 158/265 (59%), Gaps = 2/265 (0%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHH 612
            F F+KD    + LL+G   +GLY L                      +  +  S + WH 
Sbjct: 408  FFFIKDLAMRRTLLRGRCHKGLYALPSPSSHHHQVKQV---------YGVTKPSFERWHS 458

Query: 611  RLGHPCNSTFASVMKQLSIPF--TCNKLNFCEACKVGKLHSMHFPSIKSKSAAPFDLVYS 438
            RLGHP  +    V+K  ++P      +++ C+AC+  K H + FP   S+S  P +LV+S
Sbjct: 459  RLGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFS 518

Query: 437  DVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKA 258
            DVWGPA   S    KYY+ F+D++++FTWI+ L  KSEV+    +F SL+ER F+ KI A
Sbjct: 519  DVWGPAPQ-SVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVA 577

Query: 257  FQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLK 78
             Q DWGGEY+KL S F  +GI     CP+TH QNG  ERKH+HIV++GL LL+++ +PLK
Sbjct: 578  MQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLK 637

Query: 77   FWWDAFSTATYLINLLPTSVLHNSS 3
            FW +AF +A YLIN  P+ VLH+ S
Sbjct: 638  FWGEAFLSAVYLINRTPSRVLHDVS 662



 Score = 69.7 bits (169), Expect(2) = 2e-69
 Identities = 41/150 (27%), Positives = 65/150 (43%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +C K  H    C+ R+D +FV  +  +                              VD 
Sbjct: 281  LCYKRGHTVCDCWYRYDENFVPDERFAGTAVSYG-----------------------VDT 317

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WY+D+GA+ HVT EL  L+++  YHG+D++   +G+ + ISH G               
Sbjct: 318  NWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIG--NSVVKTPSRNLHL 375

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFH 797
              +L VP   KNL+S  + T DN   +E +
Sbjct: 376  KDVLYVPKANKNLVSAYKLTSDNLAFIELY 405


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  217 bits (552), Expect(2) = 3e-68
 Identities = 112/265 (42%), Positives = 158/265 (59%), Gaps = 2/265 (0%)
 Frame = -3

Query: 791  FCFVKDKTTNQILLKGVLKEGLYQLDLXXXXXXXXXXXXXXSMQQCNFASSNSSLDIWHH 612
            F  +KD+ T  +LL+G  + GLY +                S  +    ++  SL  WH 
Sbjct: 414  FFSIKDQVTRDVLLEGKCRHGLYPIP----------KSFGRSTNKQALGAAKLSLSRWHS 463

Query: 611  RLGHPCNSTFASVMKQLSIPFTCNKLN--FCEACKVGKLHSMHFPSIKSKSAAPFDLVYS 438
            RLGHP       V+ + ++P +   +N   C AC+  K H + +    S S  P +LV+S
Sbjct: 464  RLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFS 523

Query: 437  DVWGPAATPSCDGYKYYIHFLDEFTRFTWIFPLVSKSEVYSTVLQFISLIERQFSSKIKA 258
            DVWGPA   S    KYY+ F+D+F++FTWI+ L  KSEV+    +F +L+ER F  KI A
Sbjct: 524  DVWGPAPE-SVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIA 582

Query: 257  FQCDWGGEYRKLSSHFQSLGIVFRHPCPYTHAQNGMPERKHQHIVDLGLTLLSHAHLPLK 78
             Q DWGGEY+KL+S F  +GI     CP+TH QNG  ERKH+HI+++GL+LLS+A +PLK
Sbjct: 583  MQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLK 642

Query: 77   FWWDAFSTATYLINLLPTSVLHNSS 3
            FW +AF  ATYLIN +P+  + NS+
Sbjct: 643  FWDEAFVAATYLINRIPSKTIQNST 667



 Score = 71.6 bits (174), Expect(2) = 3e-68
 Identities = 42/151 (27%), Positives = 68/151 (45%)
 Frame = -1

Query: 1246 ICGKTNHLASKCFKRFDVSFVGLDNSSSPXXXXXXXXXXXXXXXXXXXXXXATTYPVVDN 1067
            +C K  H A+ C+ RFD  +V  +   +                        T    +D 
Sbjct: 286  VCFKRGHTAADCWYRFDEDYVADEKLVAAA----------------------TNSYGIDT 323

Query: 1066 SWYIDSGASTHVTSELGNLSIQSPYHGHDKLTVGNGSKLSISHTGXXXXXXXXXXXXXXX 887
            +WYID+GA+ H+T EL  L+ +  Y+G +++   +G+ + ISH G               
Sbjct: 324  NWYIDTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIG--HTIVHTPSRNIHL 381

Query: 886  HKILCVPDITKNLLSISQFTKDNNVLVEFHA 794
            + +L VP   KNL+S SQ   DN+  +E H+
Sbjct: 382  NNVLYVPQAKKNLISASQLAADNSAFLELHS 412