BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00047244
         (2100 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]   206   3e-95
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]   213   5e-80
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]   198   3e-75
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]   198   4e-71
gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposo...   234   4e-67
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   242   3e-64
gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposo...   228   1e-62
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   236   3e-62
gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposo...   227   2e-61
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   232   2e-61
gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposo...   227   2e-61
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   232   5e-61
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   227   1e-60
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...   230   3e-60
gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposo...   214   5e-60
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo...   228   5e-60
gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposo...   218   2e-59
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   224   3e-59
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   227   3e-59
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo...   219   7e-59

>emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]
          Length = 1079

 Score =  206 bits (523), Expect(2) = 3e-95
 Identities = 118/279 (42%), Positives = 162/279 (58%), Gaps = 12/279 (4%)
 Frame = -2

Query: 803  EQNKSK*DQETKRVLLRGNVSNGLYTFKMTK---SKDANSQIN---SPVSFQHTFSSSL- 645
            EQ +   DQ +K V+L G +  GLY F  ++    K A SQ++   S  S Q    ++  
Sbjct: 373  EQVRVGNDQVSKIVVLEGKLKGGLYAFDSSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQ 432

Query: 644  ----MSINSAQANKVSLETWHSRLGHASFDIVRKALSNCNLP-FIDNENGRLCFSCVQAK 480
                +S   +Q    ++  WH RLGH SF IV+  +S C L  F       +C +C   K
Sbjct: 433  VSIHVSDLQSQNGSSTVGIWHDRLGHPSFKIVQTVMSLCKLSKFNKILPNFVCKACCLGK 492

Query: 479  SHKLPFPISQSKNYDLLELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSE 300
             H LPFP S S+  + L+L+Y+DLWGP P+ S NG KYY+ FVD  SR+ WIY L+ KS 
Sbjct: 493  IHMLPFPTSISEYQEPLQLVYSDLWGPSPVQSSNGYKYYVCFVDAFSRYNWIYLLRNKSN 552

Query: 299  TPTVFLHFKALVEKQYSKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVE 120
            +   F +FKA  + Q   +IK LQSD    F     +   NGI HRI CP++ QQNG+ E
Sbjct: 553  SFQTFQNFKAQAKLQLGFKIKCLQSDWRGEFCAFTDYLTINGIIHRIYCPHTYQQNGVAE 612

Query: 119  RKHRHIIEVALALLSQSKVPFKFWDDAFATSVYLINRTP 3
            RKHRHI+E  L LL+++ +PFK+WD++F T V+L NR P
Sbjct: 613  RKHRHIVENGLTLLARASMPFKYWDESFKTVVFLHNRLP 651



 Score =  173 bits (439), Expect(2) = 3e-95
 Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 10/371 (2%)
 Frame = -1

Query: 1860 TVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESITSDSGKKE--INPAYTTWMR 1687
            +VKL + NFL+W++QI +A +G+ L+ F+ G H  P     S   + +  +N  +  W +
Sbjct: 26   SVKLENHNFLIWRKQIFSAIRGHNLQHFVIGVHD-PSLKFRSSEDRSQGIVNQDFLDWEQ 84

Query: 1686 QDQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGN 1507
            QDQ           E +L   +   S+ +IW++LE  FASQ+R KI Q++  LQ  KK +
Sbjct: 85   QDQLLVSWLLSSMFEGVLSRCINCESAFQIWKTLEVYFASQTRIKISQYKTLLQNTKKES 144

Query: 1506 LPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREV 1327
            L M +YL K++   D LA  G  +S +D +  I  GL ++YD+  ++I SR E  S+ E+
Sbjct: 145  LSMNEYLLKIRGFVDLLALVGVNLSVKDHIDAITDGLLSEYDTFFLTINSRTEDYSIEEI 204

Query: 1326 YALLLSFEARLENAESSQIN-----MDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXX 1162
             +LLL+ EAR+E      +      +     + NF    + P                  
Sbjct: 205  ESLLLAQEARIEKHNKRLLKLLLVILHKIQFHPNFGRGNFSPRGRDGFQGRGGFNNGGWR 264

Query: 1161 XGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATNGQDVC 982
              N  + N                KP  QVC   GH+A +CY+R++ +F    T G    
Sbjct: 265  SWNTWNNNATANAE----------KPVCQVCMKIGHSADRCYYRYDPSFQGPHTPG---- 310

Query: 981  SPGGYNQGPSANIANINVPGTLNTRNIDTTQEVC---WYPDSGASHHVTYDLNNLNIGAE 811
                + + P   I   N P       + T + +C   WYPDSGAS+HVT + NNL     
Sbjct: 311  FTPSFQKSPQTQIQGGNKPNMQVL--MATPENICDTNWYPDSGASNHVTTNANNLVEHTP 368

Query: 810  YQGTKQVKIGS 778
            Y G +QV++G+
Sbjct: 369  YYGNEQVRVGN 379


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score =  213 bits (541), Expect(2) = 5e-80
 Identities = 112/260 (43%), Positives = 151/260 (58%)
 Frame = -2

Query: 782 DQETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
           D+ TK VL +G + NGLY F M  +K   S IN+  +F   F S++        NK  L 
Sbjct: 245 DRHTKMVLAQGKLENGLYKFPMFSNKKPYSSINNASAFHSHFXSTV-------ENKAEL- 296

Query: 602 TWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLEL 423
            WH+RLGHA+ DIV K ++ CN+     ++  +CF C  AKSH+LP  +S    +  LEL
Sbjct: 297 -WHNRLGHAASDIVSKVMNTCNVASRKYKS-TVCFDCQLAKSHRLPTQLSNFHAFKSLEL 354

Query: 422 IYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQ 243
           +YTD+WGP  + S   +KY+I FVD  SR+TW Y L+ K +   +F  FK  +E Q+  +
Sbjct: 355 VYTDIWGPASVKSTFEAKYFILFVDDYSRYTWFYSLQTKDQXLPIFKRFKLQMENQFDTK 414

Query: 242 IKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKV 63
           IK LQ D G  F     F    GI HR S PY+  QNG VERKHRH++E  LALLS + +
Sbjct: 415 IKCLQXDNGGEFXSFMSFLQAVGIAHRFSYPYNSTQNGRVERKHRHVVETXLALLSYASL 474

Query: 62  PFKFWDDAFATSVYLINRTP 3
           P K+W   F  + +LIN  P
Sbjct: 475 PMKYWYCTFQMATFLINLMP 494



 Score =  115 bits (289), Expect(2) = 5e-80
 Identities = 82/255 (32%), Positives = 118/255 (46%), Gaps = 10/255 (3%)
 Frame = -1

Query: 1506 LPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREV 1327
            + M DY+ K+K   D LAA G+ VS++DQ++++L GLG DY++V+ +I  R +  SL  +
Sbjct: 1    MSMIDYIMKIKEAIDNLAAIGEPVSKQDQVMNLLGGLGFDYNAVVTAINIRDDNISLEAI 60

Query: 1326 YALLLSFEARLE----------NAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXX 1177
            +++LL+FE  LE          N  SS  N  G         Q Y P             
Sbjct: 61   HSILLAFEHHLEQQSSIEQMSANYASSSNNRGGGRKFNGGRGQGYAP----------NNN 110

Query: 1176 XXXXXXGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATN 997
                    RG RN              + KP+ Q+C   GHTA  CYH F+ +F      
Sbjct: 111  NYTYRGHGRGGRNG----QGGRQNSNPSEKPQCQLCGKFGHTAQICYHXFDISF----QG 162

Query: 996  GQDVCSPGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIG 817
            GQ + S       PS N  N N    +   + ++  +  WY D GASHH+T +L N    
Sbjct: 163  GQTITS-------PSLNNGNQNNIXAMVASSSNSPADESWYLDFGASHHLTQNLGNXTST 215

Query: 816  AEYQGTKQVKIGSRN 772
            + Y GT +V IG+ N
Sbjct: 216  SPYTGTDRVTIGNDN 230


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score =  198 bits (503), Expect(2) = 3e-75
 Identities = 107/260 (41%), Positives = 147/260 (56%)
 Frame = -2

Query: 788 K*DQETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVS 609
           K D+ TK VL +G + NGLY F +  +K   S +N+  +F   FSS++        NK  
Sbjct: 252 KKDRHTKMVLAQGKLENGLYKFPVFSNKKPYSSVNNASAFHSHFSSTI-------ENKAE 304

Query: 608 LETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
           L  WH+RLGH + DIV K ++ CN+         +C  C  AKSH+LP  +S  +    L
Sbjct: 305 L--WHNRLGHVASDIVSKVMNTCNVAS-GKYKSTVCSDCQLAKSHRLPTQLSNFRASKPL 361

Query: 428 ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
           EL+YTD+WGP  + S +G+KY+I FVD  SR+TW Y L+   +T  +F  FK  +E Q+ 
Sbjct: 362 ELVYTDIWGPASVKSTSGAKYFILFVDDYSRYTWFYSLQTNDQTLPIFKRFKLQMENQFD 421

Query: 248 KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
            +IK LQSD G  F+    F              S  QNG VERKH H++E  LALLS +
Sbjct: 422 MKIKCLQSDNGGEFRSFMSFLQ------------SVAQNGRVERKHXHVVEXGLALLSHA 469

Query: 68  KVPFKFWDDAFATSVYLINR 9
            +P K+W  AF T+ +LINR
Sbjct: 470 XLPXKYWHYAFQTTTFLINR 489



 Score =  114 bits (286), Expect(2) = 3e-75
 Identities = 83/253 (32%), Positives = 118/253 (46%), Gaps = 10/253 (3%)
 Frame = -1

Query: 1506 LPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREV 1327
            + M DY+ K+K   D LAA G+ V E+D ++++L GLG+DY+ V+ +I  R +  SL  +
Sbjct: 1    MSMIDYIMKIKGATDNLAAIGEPVLEQDWVMNLLGGLGSDYNVVVTAINIRDDKISLEAI 60

Query: 1326 YALLLSFEARLE----------NAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXX 1177
            +++LL+FE RLE          N  SS  N  G         Q Y P             
Sbjct: 61   HSMLLAFEHRLEQQSSIEQMSANYASSSNNRGGGRKFNGGCGQGYAP----NNNNYTYXS 116

Query: 1176 XXXXXXGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATN 997
                    +G R N             + KP+ Q+C   GHTA  CYHRF+ +F      
Sbjct: 117  HGXGGRNGQGRRQN----------SSPSEKPQCQLCGKFGHTAQICYHRFDISF------ 160

Query: 996  GQDVCSPGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIG 817
                   G     PS N  N N    +     +++ +  WY DSGASHH+T +L NL   
Sbjct: 161  -----QGGXTTTSPSLNNGNQNNILAMVASFSNSSADESWYLDSGASHHLTQNLGNLTST 215

Query: 816  AEYQGTKQVKIGS 778
            + Y GT +V IG+
Sbjct: 216  SPYTGTDRVTIGN 228


>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score =  198 bits (503), Expect(2) = 4e-71
 Identities = 102/257 (39%), Positives = 145/257 (56%)
 Frame = -2

Query: 773  TKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLETWH 594
            T  +LLRG+  NG+Y F                S    FS  + +++     ++ L+ WH
Sbjct: 481  TGAILLRGSCENGIYIFSE--------------SLVGNFSQKVANVHE----RMLLDGWH 522

Query: 593  SRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLELIYT 414
             RLGH S+ IV+  +S  +LP   N+   LC SC   KSH+ PF  +   +   L++IYT
Sbjct: 523  KRLGHPSYPIVKNLVSIFSLPTTTNKITMLCRSCSINKSHQQPFRTTSLSSTGPLKIIYT 582

Query: 413  DLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQIKN 234
            D+WGP   T  +GS+YY+ FVDH + + W Y +  KS   T+F  FK  VE ++  +IK 
Sbjct: 583  DVWGPAHSTGLDGSRYYLLFVDHYTIYMWFYPMATKSSVSTIFPQFKIFVETRFQAKIKT 642

Query: 233  LQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKVPFK 54
            L SD G  F  L  F + +GI H  + PY+PQQNG+ ER+HRH++E  L LLS + +P  
Sbjct: 643  LYSDNGGEFISLKPFLNLHGISHYTTAPYTPQQNGVSERRHRHLVETGLTLLSDASLPLS 702

Query: 53   FWDDAFATSVYLINRTP 3
            +W  AF T+ YLINR P
Sbjct: 703  YWPHAFRTATYLINRQP 719



 Score =  100 bits (250), Expect(2) = 4e-71
 Identities = 95/364 (26%), Positives = 139/364 (38%), Gaps = 3/364 (0%)
 Frame = -1

Query: 1863 ITVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESITSDSGKKEINPAYTTWMRQ 1684
            I  KL  + F  W+ Q  A   GY L  ++TG    P  S  S S   +     T W+RQ
Sbjct: 156  INEKLTPSTFPQWRAQFEALLIGYDLLDYVTGISQCPSPSDLSISALHK-----THWVRQ 210

Query: 1683 DQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGNL 1504
            D+          S  I        +S E W+ L T +AS+SR + MQ + +L  +++GN 
Sbjct: 211  DKLILSALLASTSPTITPLIATAKTSHEAWQKLNTLYASKSRTRAMQLKEELTLIQRGNR 270

Query: 1503 PMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREVY 1324
             + DYL+ VK   D +A     +S++D  L+  S L                   L+E++
Sbjct: 271  LISDYLHAVKSLADEIAIIDHPISDDDLTLYHQSELAKSL-------------LPLKELH 317

Query: 1323 ALLLS---FEARLENAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXXXGN 1153
             LL+    +  RLE A    +     T   + ++                        GN
Sbjct: 318  DLLVGHKHYLRRLETATQQLVAAANYTTRKSGSSGGQQRSYSKPNGPQRQSGQAPARSGN 377

Query: 1152 RGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATNGQDVCSPG 973
            R  R                Y+P+ Q C   GHTA  C                      
Sbjct: 378  RDGRR--PNGSNRPSNNQRPYRPKCQFCDELGHTAKNC---------------------- 413

Query: 972  GYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGAEYQGTKQ 793
                 P    + I    T N+    T +E  W  DS ASH++T DL NL+I +EY GT +
Sbjct: 414  -----PQLKPSEI----TANSATTSTMKEQKWLLDSAASHNITGDLQNLSIHSEYDGTDE 464

Query: 792  VKIG 781
            V +G
Sbjct: 465  VVLG 468


>gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 363

 Score =  234 bits (596), Expect = 4e-67
 Identities = 117/262 (44%), Positives = 172/262 (65%), Gaps = 3/262 (1%)
 Frame = -2

Query: 779 QETKRVLLRGNV-SNGLYTFKMTKSKDANSQINSPV--SFQHTFSSSLMSINSAQANKVS 609
           Q T  VL++GNV S+GLY F   + + A S  ++ +  +  +T  S +  +N+ +++  +
Sbjct: 79  QVTNEVLVQGNVGSDGLYCFPNLQLQAAPSNSSAFIVSNNSNTVVSDVDVLNNVKSSSHT 138

Query: 608 LETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
           L  WH+RLGH +F + +     CN+P ++  +G  C +C   K+H+LP  +S S   + L
Sbjct: 139 L--WHARLGHPNFHVQKLVSQQCNIPVVNKIDGFFCNACCMGKAHRLPSNLSDSVYKNPL 196

Query: 428 ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
           EL+Y+DLWGP PI S N  KYY+SFVD  SRFTWIY L+ KS+T TVF  FK +VE Q++
Sbjct: 197 ELVYSDLWGPAPIQSSNNYKYYLSFVDAYSRFTWIYLLQNKSDTLTVFKQFKMMVELQFN 256

Query: 248 KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
             +K LQ   G  F+PL+K+  D G++HR+ CP++  QNG++ERKH +I+E+ L LLS +
Sbjct: 257 TSLKILQIHWGGEFRPLSKYLKDLGVNHRVICPHTHHQNGVIERKHGNIVELGLTLLSHA 316

Query: 68  KVPFKFWDDAFATSVYLINRTP 3
            +P K WD AF T+VYLINR P
Sbjct: 317 SLPLKIWDSAFCTAVYLINRLP 338


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  242 bits (617), Expect = 3e-64
 Identities = 123/262 (46%), Positives = 165/262 (62%), Gaps = 3/262 (1%)
 Frame = -2

Query: 779  QETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINS--AQANKVSL 606
            Q++K  LLRGN+ NGLY F          QI  P  ++HT  S   +  +   Q  + S 
Sbjct: 427  QDSKETLLRGNLKNGLYVFDEV-------QILKPDVYEHTVDSVPTNRTTLYVQRTRKSY 479

Query: 605  ETWHSRLGHASFDIVRKALSNCNLPF-IDNENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
            + WH+RL HAS  IV+  +  CN+P  I++++  +C SC   KSH LPF  S +     L
Sbjct: 480  DVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPL 539

Query: 428  ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
            EL+Y+D+WGP    SR G +YY+ F D  S++TWIYF+  KSET   F+HFK++VE Q+ 
Sbjct: 540  ELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFG 599

Query: 248  KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
             +IK  QSD G  F  L K F++NGI HR+SCP+S QQNG  ERKHRHI EV L LLS S
Sbjct: 600  HKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSS 659

Query: 68   KVPFKFWDDAFATSVYLINRTP 3
             +P  FW DAF+T++++INR P
Sbjct: 660  GLPHIFWSDAFSTAIHVINRLP 681



 Score =  154 bits (388), Expect = 4e-35
 Identities = 106/383 (27%), Positives = 178/383 (46%), Gaps = 4/383 (1%)
 Frame = -1

Query: 1914 TAIVAEQTQVVQPQG--QLITVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESI 1741
            T++ +  T+   PQ     I+ KL++ NFL W+QQ  +  +GY L+  + G   +P +  
Sbjct: 1    TSMASATTKQFIPQAFSNPISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQHK 60

Query: 1740 TS-DSGKKEINPAYTTWMRQDQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQ 1564
            T  D  K  ++P Y  + +QD                +  VG     +IW +LE  FASQ
Sbjct: 61   TDEDKAKGVLSPEYEDYDQQDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQ 120

Query: 1563 SRAKIMQFRLQLQTLKKGNLPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDY 1384
            ++A++ Q ++QL+ +KK    +  YL ++K   + LAA G  ++  + +  I  GL  +Y
Sbjct: 121  TKARVKQLKIQLRGIKK-TTAINQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEY 179

Query: 1383 DSVMVSITSRVEPCSLREVYALLLSFEARLENAESSQINMDGSTINANFAAQTYVPXXXX 1204
            D  + S+ +R E  S+ ++ +LL++ E RLE  ++S    +   + AN A  ++      
Sbjct: 180  DPFITSVLTRTEEYSVEQIESLLMAQEERLEKHKAS----ESVPLQANLAQGSF---NSR 232

Query: 1203 XXXXXXXXXXXXXXXGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFN 1024
                             RG                 N +P  QVC   GH A+ C+HR++
Sbjct: 233  KQFTNQGRGSNNNGTHGRGPHRGRGRGRSAQHFGRGNKQP-CQVCGKIGHIAFHCWHRYD 291

Query: 1023 ANFV-PNATNGQDVCSPGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHV 847
              +  PN  +  +V +PG   Q          + G+ N    D      WYPDSGA++H+
Sbjct: 292  QQYTEPNLNHNTNVYNPGNQQQ------MQAMIAGSQNMVYDDQ-----WYPDSGATNHL 340

Query: 846  TYDLNNLNIGAEYQGTKQVKIGS 778
            T DLNNL    +Y G  ++ +G+
Sbjct: 341  TSDLNNLGSKTDYTGQDKIHMGN 363


>gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 603

 Score =  228 bits (582), Expect = 1e-62
 Identities = 116/263 (44%), Positives = 161/263 (61%), Gaps = 4/263 (1%)
 Frame = -2

Query: 779 QETKRVLLRGNVS-NGLYTFKM---TKSKDANSQINSPVSFQHTFSSSLMSINSAQANKV 612
           Q+TK VLL+G+V  +GLY F     T S  +  Q+    SF         S+N+A  + V
Sbjct: 111 QDTKEVLLQGSVGPDGLYQFPALLPTPSTQSVQQVQPARSF---------SVNTAAKSYV 161

Query: 611 SLETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDL 432
           S  TWHSRLGH + D+++    N N+  + N     C  C   KSH+LP  +S+      
Sbjct: 162 SFATWHSRLGHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTP 221

Query: 431 LELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQY 252
            +L+Y DLWGP P+TS  G +YY++FVD  +RFTWIY LK K++T  VF  F A+V  QY
Sbjct: 222 FDLVYNDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQY 281

Query: 251 SKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQ 72
              IK LQ+D G  ++    + ++ GI HR+ C ++  QNG+VERKHRHI+E+ L LL+Q
Sbjct: 282 HHPIKALQTDWGGEYRSFTNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLTLLAQ 341

Query: 71  SKVPFKFWDDAFATSVYLINRTP 3
           +++P +FWD AF T VYLINR P
Sbjct: 342 AELPMQFWDHAFLTGVYLINRLP 364


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  236 bits (601), Expect = 3e-62
 Identities = 125/263 (47%), Positives = 161/263 (61%), Gaps = 3/263 (1%)
 Frame = -2

Query: 782  DQETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSIN--SAQANKVS 609
            D  T+ VL+ G +  GLY F        N+Q+  P+     F+S+ +     +  A+  S
Sbjct: 450  DPSTRTVLMHGQLKGGLYVFD-------NTQLKLPLHNSSCFASTALPSKEPTVPASPTS 502

Query: 608  LET-WHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDL 432
              T WH+RLGH S  IV   L+ CNLP ++     +C  C   K HK  F  S S     
Sbjct: 503  PFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKP 562

Query: 431  LELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQY 252
            LELI+TDLWGP    S +G +YYI F+D  SRFTWIY LK KSE   VFLHFK+ VE Q 
Sbjct: 563  LELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQL 622

Query: 251  SKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQ 72
              +IK +QSD G  ++   ++   NGI HRISCPY+ +QNGL ERKHRHI+E  +ALL+Q
Sbjct: 623  GHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQ 682

Query: 71   SKVPFKFWDDAFATSVYLINRTP 3
            + +PFK+WD+AF TSVYLINR P
Sbjct: 683  ASLPFKYWDEAFRTSVYLINRLP 705



 Score =  184 bits (467), Expect = 5e-45
 Identities = 120/393 (30%), Positives = 194/393 (49%), Gaps = 24/393 (6%)
 Frame = -1

Query: 1863 ITVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESITSDSG-KKEINPAYTTWMR 1687
            ++ KL++ NFLV ++QIL   +G+ L+ FL+    +P E ++SD   +  +NP +  W +
Sbjct: 19   VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78

Query: 1686 QDQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGN 1507
            Q Q          ++ +L   V   +S ++W++LE  FA+Q RAK+ QF+ QL   KKG+
Sbjct: 79   QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138

Query: 1506 LPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREV 1327
            L + DYL K++   D LA  G K+S +D +  I  GL  DY++ ++S+ SR++P ++ E+
Sbjct: 139  LSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEI 198

Query: 1326 YALLLSFEARLE--------------------NAESSQINMDGSTINANFAAQTYVPXXX 1207
             ALLL+ E+R+E                       S   N   ST N+NF   T+     
Sbjct: 199  EALLLAQESRIEKNIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTH----- 253

Query: 1206 XXXXXXXXXXXXXXXXGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRF 1027
                              RG+                N KP+ Q+C   GH   +CY+RF
Sbjct: 254  ----------SGNGMQHFRGNFTQQGRGRHGRGSWKGNNKPQCQLCGRIGHVVMQCYYRF 303

Query: 1026 NANFV-PNATNGQDVCSPGGYNQGPSANIANINVPGTLNTR--NIDTTQEVCWYPDSGAS 856
            + +F  P+   G     P G        ++    PGT + +    +  Q+  WYPDSGA+
Sbjct: 304  DQSFTGPSQLQGN---RPQGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGAT 360

Query: 855  HHVTYDLNNLNIGAEYQGTKQVKIGSRNKEGAP 757
            HH+T +LNNL   +++  + +V +G  N +G P
Sbjct: 361  HHLTPNLNNLLTKSQFPSSDEVFVG--NGKGLP 391


>gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 661

 Score =  227 bits (578), Expect = 2e-61
 Identities = 114/255 (44%), Positives = 157/255 (61%), Gaps = 13/255 (5%)
 Frame = -2

Query: 728 TFKMTKSKDANS-------------QINSPVSFQHTFSSSLMSINSAQANKVSLETWHSR 588
           TF + KS+D+N              Q  S +  +H  S+ L S ++  +N VS  TWHSR
Sbjct: 62  TFCLVKSQDSNETLLLGVVGPDGLYQFPSLLLPRHP-SAVLPSAHTVSSNSVSYATWHSR 120

Query: 587 LGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLELIYTDL 408
           LGHA  D+++     CN P I+      C SC   KSHKLP  +S++  +   ELIY+DL
Sbjct: 121 LGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDL 180

Query: 407 WGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQIKNLQ 228
           WGP P+ S NG +YY++ VD  +RFTWI+ LK+K+ T  VF  F A+V+ Q+   IK +Q
Sbjct: 181 WGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHAMVQNQFQLPIKAIQ 240

Query: 227 SDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKVPFKFW 48
           +D G  F+    +   +GIHHRI CP++  QNG+VE KHRHI+E+ L LL+Q+++   FW
Sbjct: 241 TDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELGLTLLAQAQLSMSFW 300

Query: 47  DDAFATSVYLINRTP 3
           D AF TSVYLINR P
Sbjct: 301 DYAFLTSVYLINRLP 315


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  232 bits (592), Expect = 2e-61
 Identities = 110/260 (42%), Positives = 164/260 (63%), Gaps = 1/260 (0%)
 Frame = -2

Query: 779 QETKRVLLRGNV-SNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
           Q+T  VLL+G+V S+GLY F       +   +      Q    + + S+N+A  + VS  
Sbjct: 111 QDTNEVLLQGSVGSDGLYKFPALLPNPSTQSV------QQQQLARIFSVNTAATSPVSFA 164

Query: 602 TWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLEL 423
           TWHSRLGH + D+++    N N+  + N     C  C   KSH+LP  +S++      +L
Sbjct: 165 TWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDL 224

Query: 422 IYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQ 243
           +Y+DLWGP P+TS  G +YY++FVD  +RFTWIY LK+K++T  VF  F A+V+ QY   
Sbjct: 225 VYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHP 284

Query: 242 IKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKV 63
           IK LQ+D G  ++    + ++ GI HR+ CP++  QNG+ ERKHRHI+E+ L L++Q+++
Sbjct: 285 IKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAEL 344

Query: 62  PFKFWDDAFATSVYLINRTP 3
           P +FWD +F T+VYLINR P
Sbjct: 345 PMQFWDHSFLTAVYLINRLP 364


>gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 682

 Score =  227 bits (578), Expect = 2e-61
 Identities = 114/255 (44%), Positives = 157/255 (61%), Gaps = 13/255 (5%)
 Frame = -2

Query: 728 TFKMTKSKDANS-------------QINSPVSFQHTFSSSLMSINSAQANKVSLETWHSR 588
           TF + KS+D+N              Q  S +  +H  S+ L S ++  +N VS  TWHSR
Sbjct: 83  TFCLVKSQDSNETLLLGVVGPDGLYQFPSLLLPRHP-SAVLPSAHTVSSNSVSYATWHSR 141

Query: 587 LGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLELIYTDL 408
           LGHA  D+++     CN P I+      C SC   KSHKLP  +S++  +   ELIY+DL
Sbjct: 142 LGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDL 201

Query: 407 WGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQIKNLQ 228
           WGP P+ S NG +YY++ VD  +RFTWI+ LK+K+ T  VF  F A+V+ Q+   IK +Q
Sbjct: 202 WGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHAMVQNQFQLPIKAIQ 261

Query: 227 SDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKVPFKFW 48
           +D G  F+    +   +GIHHRI CP++  QNG+VE KHRHI+E+ L LL+Q+++   FW
Sbjct: 262 TDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELGLTLLAQAQLSMSFW 321

Query: 47  DDAFATSVYLINRTP 3
           D AF TSVYLINR P
Sbjct: 322 DYAFLTSVYLINRLP 336


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  232 bits (592), Expect = 5e-61
 Identities = 110/260 (42%), Positives = 164/260 (63%), Gaps = 1/260 (0%)
 Frame = -2

Query: 779  QETKRVLLRGNV-SNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
            Q+T  VLL+G+V S+GLY F       +   +      Q    + + S+N+A  + VS  
Sbjct: 446  QDTNEVLLQGSVGSDGLYKFPALLPNPSTQSV------QQQQLARIFSVNTAATSPVSFA 499

Query: 602  TWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLEL 423
            TWHSRLGH + D+++    N N+  + N     C  C   KSH+LP  +S++      +L
Sbjct: 500  TWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDL 559

Query: 422  IYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQ 243
            +Y+DLWGP P+TS  G +YY++FVD  +RFTWIY LK+K++T  VF  F A+V+ QY   
Sbjct: 560  VYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHP 619

Query: 242  IKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKV 63
            IK LQ+D G  ++    + ++ GI HR+ CP++  QNG+ ERKHRHI+E+ L L++Q+++
Sbjct: 620  IKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAEL 679

Query: 62   PFKFWDDAFATSVYLINRTP 3
            P +FWD +F T+VYLINR P
Sbjct: 680  PMQFWDHSFLTAVYLINRLP 699



 Score =  142 bits (357), Expect = 3e-31
 Identities = 104/367 (28%), Positives = 161/367 (43%), Gaps = 5/367 (1%)
 Frame = -1

Query: 1863 ITVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESITSDSGKKEINPAYTTWMRQ 1684
            I+ KL+  N+L+W QQ+    KG+ L  +L         +  +D     I+ +Y  W +Q
Sbjct: 40   ISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFATLADRDAGHISESYLAWEQQ 99

Query: 1683 DQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGNL 1504
            DQ          S+++L   +G  SS ++W+ + T F S   AK  Q R +L++    NL
Sbjct: 100  DQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTLDNL 159

Query: 1503 PMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREVY 1324
             + +Y+ +++   D L A G  VS ++ +  IL GL  +Y+S +  I+SR +  ++ EV 
Sbjct: 160  SISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEVE 219

Query: 1323 ALLLSFEARLENAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXXXGNRGS 1144
             LLL  E+RL+  +        ++IN   A     P                     RG 
Sbjct: 220  TLLLGHESRLDKFKKKA----AASINVTTAVTEPDPSATNPQAHLTHQNNQSGPSHRRGG 275

Query: 1143 RNNIXXXXXXXXXXXSNYKPRF-----QVCFFTGHTAYKCYHRFNANFVPNATNGQDVCS 979
            R N               + RF     QVC   GH A  CY+RF+  +VP+        S
Sbjct: 276  RTN--SRGGRFSNWAGRGRGRFAGYQCQVCHRYGHVASACYYRFDETYVPS--------S 325

Query: 978  PGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGAEYQGT 799
            P      PS N      PG  N           WYPDSGAS+HVT    N++    ++G 
Sbjct: 326  PLEAPAYPSNN--QHTNPGACNNN---------WYPDSGASNHVTNVSQNIHQFTPFEGP 374

Query: 798  KQVKIGS 778
             Q+ +G+
Sbjct: 375  DQIHVGN 381


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  227 bits (578), Expect = 1e-60
 Identities = 115/260 (44%), Positives = 152/260 (58%), Gaps = 1/260 (0%)
 Frame = -2

Query: 779  QETKRVLLRGNVS-NGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
            Q+TK  LL G V  +GLY F           I               S N+A  + V   
Sbjct: 357  QDTKDTLLMGVVGPDGLYQFPSLLQPRQQPAITP-------------SANTASCHSVPYV 403

Query: 602  TWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLEL 423
            TWHSRLGH   D+++     CN P I+      C  C   KSHKLP   S++  +   EL
Sbjct: 404  TWHSRLGHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFEL 463

Query: 422  IYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQ 243
            IY+DLWGP PITS NG +YY++FVD  +RFTWI+ LK K+ T  VF  F A+++ Q+   
Sbjct: 464  IYSDLWGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLP 523

Query: 242  IKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKV 63
            IK +Q+D G  F+    +   NGI HR+ CP++  QNG+VERKHRHI+E+ L +L+Q+ +
Sbjct: 524  IKAIQTDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELGLTMLAQAHL 583

Query: 62   PFKFWDDAFATSVYLINRTP 3
            P +FWD AF TSVYLINR P
Sbjct: 584  PMQFWDHAFLTSVYLINRLP 603


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  230 bits (587), Expect = 3e-60
 Identities = 123/262 (46%), Positives = 167/262 (63%), Gaps = 2/262 (0%)
 Frame = -2

Query: 782  DQETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
            DQ TK +LLRG   NGLY    T S   + Q+   +                   K ++ 
Sbjct: 1375 DQVTKNLLLRGPCRNGLYPLP-TSSLATSKQVLGAI-------------------KPTMS 1414

Query: 602  TWHSRLGHASFDIVRKALSNCNLPFID--NENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
             WHSRLGH S  IV+K +S+ NLP +   NE+G +C +C QAKSH+LP+P S S + + L
Sbjct: 1415 RWHSRLGHPSLAIVQKVVSSNNLPCLGDVNESG-VCNACQQAKSHQLPYPKSFSVSNNPL 1473

Query: 428  ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
            EL+++D+WGP P TS  G KYY+SF+D  S+FTWIY LK+K+E    F  F+  VE+ ++
Sbjct: 1474 ELVFSDVWGPAP-TSVGGRKYYVSFIDDFSKFTWIYLLKSKAEVFLKFQEFQQRVERLFN 1532

Query: 248  KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
            ++I ++Q+D G  ++ L  FF   GI H +SCPY+ QQNG  ERKHRHI+EV LALLS +
Sbjct: 1533 RKIISMQTDWGGEYEKLHSFFTKIGISHHVSCPYAHQQNGSAERKHRHIVEVGLALLSHA 1592

Query: 68   KVPFKFWDDAFATSVYLINRTP 3
             +P KFWD+AF  + YLINRTP
Sbjct: 1593 SMPLKFWDEAFLAAAYLINRTP 1614



 Score =  115 bits (289), Expect = 6e-23
 Identities = 73/289 (25%), Positives = 131/289 (45%)
 Frame = -1

Query: 1644 ENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGNLPMRDYLNKVKVCC 1465
            ++IL   V L ++   W  + T  +SQSRA+ +  RL L T +KG+L + +Y+ K+K   
Sbjct: 1058 KDILTQVVNLETAAATWRVITTMLSSQSRARALNTRLALSTTRKGDLSVTEYIGKMKTLA 1117

Query: 1464 DTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREVYALLLSFEARLENA 1285
            D +++AG+ + +E+ M +IL GL +DY+ V+ ++  + E   + E+Y  LLSFE+R +  
Sbjct: 1118 DEMSSAGKPLDDEEMMSYILPGLDDDYEPVVSTLVGKAEAVPVAEIYTQLLSFESRAKLR 1177

Query: 1284 ESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXXXGNRGSRNNIXXXXXXXXX 1105
            + +    +GS++N+                            G RG R            
Sbjct: 1178 QQA----NGSSVNSARRGGKGGGGGFSNNVNTGNTGAFRGRGGGRGDRGGRGRGNGGGAR 1233

Query: 1104 XXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATNGQDVCSPGGYNQGPSANIANINVP 925
              +  +   Q+C   GH    C++R++ NF+P++                          
Sbjct: 1234 FSNKPRSTCQLCGKIGHVVADCWYRYDENFIPDSKT------------------------ 1269

Query: 924  GTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGAEYQGTKQVKIGS 778
                +  +DT     WY D+GA+ H+T +L+ L    +Y G +Q+   S
Sbjct: 1270 AAAASYGVDTN----WYMDTGATDHITGELDKLTTHEKYNGKEQIHTAS 1314


>gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 340

 Score =  214 bits (545), Expect = 5e-60
 Identities = 113/266 (42%), Positives = 168/266 (63%), Gaps = 7/266 (2%)
 Frame = -2

Query: 779 QETKRVLLRGNV-SNGLYTFKMTKSKDANSQINS----PVSFQHTFSSSLMSINSAQANK 615
           QET  VLL+  V ++GLY+F   K +  ++ ++S    P     + S+ L + N  + + 
Sbjct: 27  QETNEVLLQDIVGADGLYSFPNLKLQSPSALVSSLAQIPSQSAVSTSAVLDNFNFNKNSD 86

Query: 614 VSLET--WHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKN 441
           VS  +  WH+RLGH +  +++   + CNL   + +  + C SC   KS +LP   SQ+  
Sbjct: 87  VSSSSTMWHTRLGHPNSHVLKLVHTQCNLLSSNTQVTKFCSSCCVGKSRRLPSSASQTIY 146

Query: 440 YDLLELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVE 261
              L+LI+T+LWGP  ITS +G  YY++F+D  S++TWIY LK+K ET ++F  FKA+VE
Sbjct: 147 SAPLDLIFTNLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKVETLSIFQQFKAMVE 206

Query: 260 KQYSKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALAL 81
            Q++ +IK++QSD G  ++    F   NGI HR+ CP++  QNG+VERKHRHI+E+ L L
Sbjct: 207 LQFNTKIKSVQSDWGGEYRAFTSFLATNGIKHRVICPHTHHQNGVVERKHRHIVEIGLTL 266

Query: 80  LSQSKVPFKFWDDAFATSVYLINRTP 3
           L  + +P KFWD +F T VYLINR P
Sbjct: 267 LHHASLPLKFWDFSFTTDVYLINRLP 292


>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1085

 Score =  228 bits (582), Expect = 5e-60
 Identities = 116/263 (44%), Positives = 161/263 (61%), Gaps = 4/263 (1%)
 Frame = -2

Query: 779  QETKRVLLRGNVS-NGLYTFKM---TKSKDANSQINSPVSFQHTFSSSLMSINSAQANKV 612
            Q+TK VLL+G+V  +GLY F     T S  +  Q+    SF         S+N+A  + V
Sbjct: 318  QDTKEVLLQGSVGPDGLYQFPALLPTPSTQSVQQVQPARSF---------SVNTAAKSYV 368

Query: 611  SLETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDL 432
            S  TWHSRLGH + D+++    N N+  + N     C  C   KSH+LP  +S+      
Sbjct: 369  SFATWHSRLGHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTP 428

Query: 431  LELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQY 252
             +L+Y DLWGP P+TS  G +YY++FVD  +RFTWIY LK K++T  VF  F A+V  QY
Sbjct: 429  FDLVYNDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQY 488

Query: 251  SKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQ 72
               IK LQ+D G  ++    + ++ GI HR+ C ++  QNG+VERKHRHI+E+ L LL+Q
Sbjct: 489  HHPIKALQTDWGGEYRSFTNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLTLLAQ 548

Query: 71   SKVPFKFWDDAFATSVYLINRTP 3
            +++P +FWD AF T VYLINR P
Sbjct: 549  AELPMQFWDHAFLTGVYLINRLP 571



 Score = 99.0 bits (245), Expect = 9e-18
 Identities = 81/307 (26%), Positives = 129/307 (42%), Gaps = 4/307 (1%)
 Frame = -1

Query: 1686 QDQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGN 1507
            QDQ          S+++L   +G  SS ++W+ + + F S   AK  Q R +L+     N
Sbjct: 1    QDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHSYFHSHMNAKARQLRNELRNTSLEN 60

Query: 1506 LPMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREV 1327
              + +Y+ +++   D L A G  VS ++ +  IL GL  +Y+S +  I+SR +  ++ EV
Sbjct: 61   QTISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEV 120

Query: 1326 YALLLSFE----ARLENAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXXX 1159
              LLL  E    A  EN  +      G T   NF    +                     
Sbjct: 121  ETLLLGHESPHLAHQENQSAFSQRRGGRT---NFRGGCF--------------------- 156

Query: 1158 GNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATNGQDVCS 979
             NR  R              + Y  + QVC   GH A  CY+RF+  +VP++    +  +
Sbjct: 157  SNRAGRGR---------GRFAGY--QCQVCHRYGHVASACYYRFDETYVPSSP--LEAPA 203

Query: 978  PGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGAEYQGT 799
                NQ  + ++ N N                 WYPDSGAS+HVT    N+     ++G 
Sbjct: 204  YHSTNQHANTSVCNNN-----------------WYPDSGASNHVTNVSQNIQQFTPFEGP 246

Query: 798  KQVKIGS 778
             Q+ +G+
Sbjct: 247  DQIHVGN 253


>gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 533

 Score =  218 bits (556), Expect = 2e-59
 Identities = 114/246 (46%), Positives = 151/246 (61%), Gaps = 3/246 (1%)
 Frame = -2

Query: 779  QETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINS--AQANKVSL 606
            Q++K  LLRGN+ NGLY F          QI  P  ++HT  S   +  +   Q  + S 
Sbjct: 293  QDSKETLLRGNLKNGLYVFDEV-------QILKPDVYEHTVDSVPTNRTTLYVQRTRKSY 345

Query: 605  ETWHSRLGHASFDIVRKALSNCNLPF-IDNENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
            + WH+RL HAS  IV+  +  CN+P  I++++  +C SC   KSH LPF  S +     L
Sbjct: 346  DVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPL 405

Query: 428  ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
            EL+Y+D+WGP    SR G +YY+ F D  S++TWIYF+  KSET   F+HFK++VE Q+ 
Sbjct: 406  ELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFG 465

Query: 248  KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
             +IK  QSD G  F  L K F++NGI HR+SCP+S QQNG  ERKHRHI EV L LLS S
Sbjct: 466  HKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSS 525

Query: 68   KVPFKF 51
             +P  F
Sbjct: 526  GLPHIF 531



 Score = 91.7 bits (226), Expect = 8e-16
 Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 1/239 (0%)
 Frame = -1

Query: 1491 YLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREVYALLL 1312
            YL ++K   + LAA G  ++  + +  I  GL  +YD  + S+ +R E  S+ ++ +LL+
Sbjct: 10   YLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSVEQIESLLM 69

Query: 1311 SFEARLENAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXXXXXXXGNRGSRNNI 1132
            + E RLE  ++S+       + AN A  ++                       RG     
Sbjct: 70   AQEERLEKHKASE----SVPLQANLAQGSF---NSRKQFTNQGRGSNNNGTHGRGPHRGR 122

Query: 1131 XXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFV-PNATNGQDVCSPGGYNQGP 955
                        N +P  QVC   GH A+ C+HR++  +  PN  +  +V +PG   Q  
Sbjct: 123  GRGRSAQHFGRGNKQP-CQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQQMQ 181

Query: 954  SANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGAEYQGTKQVKIGS 778
            +       + G+ N    D      WYPDSGA++H+T DLNNL    +Y G  ++ +G+
Sbjct: 182  AM------IAGSQNMVYDDQ-----WYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGN 229


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 839

 Score =  224 bits (570), Expect = 3e-59
 Identities = 104/213 (48%), Positives = 139/213 (65%)
 Frame = -2

Query: 641 SINSAQANKVSLETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPF 462
           S ++  +  VS  TWHSRLGH   D+++     CN P I+      C SC   KSHKLP 
Sbjct: 138 SAHTVSSQSVSYATWHSRLGHPHNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPS 197

Query: 461 PISQSKNYDLLELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFL 282
            +S++  +   ELIY+DLWGP P+ S NG +YY++FVD  +RFTWI+ LK+K+ T  VF 
Sbjct: 198 QLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFK 257

Query: 281 HFKALVEKQYSKQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHI 102
            F A+V  Q+   IK +Q+D G  F+    +   +GIHHRI CP++  QNG+VERKHRHI
Sbjct: 258 QFHAMVRNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHI 317

Query: 101 IEVALALLSQSKVPFKFWDDAFATSVYLINRTP 3
           +E+ L LL+Q+ +P  FWD AF TSVYLINR P
Sbjct: 318 VELGLTLLAQAHLPMHFWDYAFLTSVYLINRLP 350


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  227 bits (578), Expect = 3e-59
 Identities = 118/260 (45%), Positives = 154/260 (59%)
 Frame = -2

Query: 782  DQETKRVLLRGNVSNGLYTFKMTKSKDANSQINSPVSFQHTFSSSLMSINSAQANKVSLE 603
            D  TK VL +G + NGLY F +  +    S IN+  +F   FSS++        NK  L 
Sbjct: 439  DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTV-------ENKAEL- 490

Query: 602  TWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLLEL 423
             WH+RLGHASFDIV K ++ CN+         +C  C  AKSH+LP  +S       LEL
Sbjct: 491  -WHNRLGHASFDIVSKVMNTCNVAS-GKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLEL 548

Query: 422  IYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYSKQ 243
            +YTD+WGP  I S +G++Y+I FVD  SR+TW Y L+ K +   +F  FK  +E Q+  +
Sbjct: 549  VYTDIWGPASIKSTSGARYFILFVDDYSRYTWFYSLQTKDQALPIFKXFKLQMENQFDTK 608

Query: 242  IKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQSKV 63
            IK LQSD G  F+    F    GI HR SCPY+  QNG VERKHRH++E  LALLS + +
Sbjct: 609  IKCLQSDNGGEFRSFTSFLQAVGIAHRFSCPYNSXQNGRVERKHRHVVETGLALLSHASL 668

Query: 62   PFKFWDDAFATSVYLINRTP 3
            P K+W  AF T  +LINR P
Sbjct: 669  PMKYWHYAFQTXTFLINRMP 688



 Score =  197 bits (501), Expect = 2e-49
 Identities = 125/372 (33%), Positives = 184/372 (49%), Gaps = 10/372 (2%)
 Frame = -1

Query: 1863 ITVKLNDTNFLVWKQQILAAAKGYGLEGFLTGKHTIPGESITSDSGKKEINPAYTTWMRQ 1684
            + VKL+ TN+++W+ QI       G E F+ G    P + ++       +NPA+  W RQ
Sbjct: 36   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEKDLSPGV----MNPAFVAWRRQ 91

Query: 1683 DQXXXXXXXXXXSENILITTVGLSSSKEIWESLETSFASQSRAKIMQFRLQLQTLKKGNL 1504
            D+          +  I+   +G ++S   W +LE+ F+S SRA+IMQ RL+LQ+ KKG++
Sbjct: 92   DRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSM 151

Query: 1503 PMRDYLNKVKVCCDTLAAAGQKVSEEDQMLHILSGLGNDYDSVMVSITSRVEPCSLREVY 1324
             M DY+ K+K   D LAA G+ VSE+DQ++++L GLG+DY++V+ +I  R +  SL  ++
Sbjct: 152  SMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISLEAIH 211

Query: 1323 ALLLSFEARLE----------NAESSQINMDGSTINANFAAQTYVPXXXXXXXXXXXXXX 1174
            ++LL+FE RLE          N  SS  N  G         Q Y P              
Sbjct: 212  SMLLAFEHRLEQQSSIEQMSANYASSSNNRGGGRKFNGGRGQGYSPNNNNYTYRGR---- 267

Query: 1173 XXXXXGNRGSRNNIXXXXXXXXXXXSNYKPRFQVCFFTGHTAYKCYHRFNANFVPNATNG 994
                   RG RN              + KP+ Q+C   GHTA  CYHRF+ +F    T  
Sbjct: 268  ------GRGGRNG----QGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISFQGGQTTI 317

Query: 993  QDVCSPGGYNQGPSANIANINVPGTLNTRNIDTTQEVCWYPDSGASHHVTYDLNNLNIGA 814
                + G  N  P+   +  N P            +  WY DSGASHH+T +L NL   +
Sbjct: 318  SHSLNNGNQNNIPAMVASASNNPA-----------DESWYLDSGASHHLTQNLGNLTSTS 366

Query: 813  EYQGTKQVKIGS 778
             Y GT +V IG+
Sbjct: 367  PYTGTDKVTIGN 378


>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 623

 Score =  219 bits (557), Expect = 7e-59
 Identities = 112/262 (42%), Positives = 156/262 (59%), Gaps = 8/262 (3%)
 Frame = -2

Query: 764 VLLRGNVS-NGLYTFKMTKSKDANSQI-------NSPVSFQHTFSSSLMSINSAQANKVS 609
           VLL G+++ +GLY+F          Q        +S ++   T +S + S         +
Sbjct: 42  VLLEGHLTADGLYSFPHLSFSCCQPQHLPLSIKPSSSIALSTTCTSRVCSDTVQSPTPTT 101

Query: 608 LETWHSRLGHASFDIVRKALSNCNLPFIDNENGRLCFSCVQAKSHKLPFPISQSKNYDLL 429
           L  WH+RLGH  F +++  L  C +P  +    + C +C   KSH+LP   S +     L
Sbjct: 102 LSLWHNRLGHPCFSVLQNVLKFCKIPVSNKNEVQFCVACCMGKSHRLPSSSSTTVYSTPL 161

Query: 428 ELIYTDLWGPLPITSRNGSKYYISFVDHASRFTWIYFLKAKSETPTVFLHFKALVEKQYS 249
           EL++ DLWGP P+ S  G  YY+SFVD  SRFTWIYFLK KSE  T+F  F+A+ + Q++
Sbjct: 162 ELLFCDLWGPTPMLSSMGYHYYMSFVDAYSRFTWIYFLKNKSEALTIFKQFQAMAKLQFN 221

Query: 248 KQIKNLQSDRGTGFKPLAKFFHDNGIHHRISCPYSPQQNGLVERKHRHIIEVALALLSQS 69
            +IK+ QSD G  F+P  +     GI HR+ CP++  QNG+VERKHRHIIE+ L LLSQ+
Sbjct: 222 HKIKSFQSDWGGEFRPFTQILTSLGITHRLICPHTHHQNGVVERKHRHIIEMGLTLLSQA 281

Query: 68  KVPFKFWDDAFATSVYLINRTP 3
            +P K+WD  F T+VYLINR P
Sbjct: 282 FLPMKYWDHVFHTTVYLINRLP 303