BLASTX nr result
ID: Rehmannia27_contig00045786
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00045786
(836 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 239 1e-71
ref|XP_011073037.1| PREDICTED: retrovirus-related Pol polyprotei... 231 1e-69
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 204 2e-57
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 190 3e-54
gb|AAK29467.1| polyprotein-like [Solanum chilense] 186 9e-50
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 180 4e-49
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 182 2e-48
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 177 5e-47
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 177 7e-47
emb|CDP17738.1| unnamed protein product [Coffea canephora] 176 9e-47
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 174 6e-46
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 170 2e-45
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 172 2e-45
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 173 2e-45
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 173 2e-45
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 172 3e-45
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 172 3e-45
gb|KYP38720.1| Retrovirus-related Pol polyprotein from transposo... 160 5e-45
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 172 6e-45
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 172 6e-45
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 239 bits (611), Expect = 1e-71
Identities = 120/231 (51%), Positives = 157/231 (67%)
Frame = -3
Query: 693 SVNSVNNLAKSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVC 514
SVNSV + SE EWL+DSAC++HMTP R +F+DY ++ + V++A+ V GIG VC
Sbjct: 4 SVNSVL-ASLSENEWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTMIVVNGIGTVC 62
Query: 513 LKFDNGCTLTLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTR 334
LKF +G LTLKNVRHVP LS+NLISCA LE DG G WG+G M I+KGS + KA +
Sbjct: 63 LKFVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRMG 122
Query: 333 NLYVLHAKLEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNT 154
N+YV A+ ND+++LWHK LGH+S+K L +LHK FGNDK+++
Sbjct: 123 NMYVCSAE--------SSASMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSS 174
Query: 153 LSFCDSCVYGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGGN 1
++ CDSC+ GKQ V FP P S ++LEY+HADVWGP+SVPT+GGN
Sbjct: 175 VTLCDSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGN 225
>ref|XP_011073037.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Sesamum indicum]
Length = 472
Score = 231 bits (588), Expect = 1e-69
Identities = 120/241 (49%), Positives = 162/241 (67%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GHYIK+C KP+R N+++ + E+ + S N G+VF++ E+ NSV+ E
Sbjct: 249 GHYIKDCRKPRRENRDRNYDDKEKVSNVSIESN-GEVFVVYEA-----NSVSTFDMHE-- 300
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
WLIDS CTFHM+P++ +FT+ G VSMANEKKC++ G+G++ L FD G + LKNV
Sbjct: 301 WLIDSGCTFHMSPFKDIFTNLKYEHAGFVSMANEKKCEIKGLGDISLCFD-GYKMLLKNV 359
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
R+VPDLS+NLISCAALE +GLEG+WG G+MKI+KGS++V KA + RNLY+ A +
Sbjct: 360 RYVPDLSHNLISCAALEENGLEGRWGKGLMKIMKGSLVVFKAERKRNLYICTASYD---- 415
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
D+T LWHKRLGHIS KGL+ L ++G NDK++ L FCD CV GKQ +
Sbjct: 416 ---NIAASVSVCDLTSLWHKRLGHISQKGLDFLKRDGVL-NDKIDKLDFCDECVMGKQHR 471
Query: 111 V 109
V
Sbjct: 472 V 472
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 204 bits (518), Expect = 2e-57
Identities = 109/278 (39%), Positives = 158/278 (56%), Gaps = 2/278 (0%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNN--EQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSE 658
GH I +C K+ + Q+ N E AN+ + SD GDV + SV++ +S+
Sbjct: 237 GHDISDCFILKKKQERQEKGKNPAEAANVETDSD--GDVMI----------SVSSDKRSK 284
Query: 657 LEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLK 478
EW++DS CTFHM PY+ +FT V G V M N+ +CK+ GIG + +K +G TL
Sbjct: 285 TEWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLS 344
Query: 477 NVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXX 298
NVR +PDL NLIS LES G + GV+K+ KG++++ KA + +LY+L +
Sbjct: 345 NVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSI--- 401
Query: 297 XXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQ 118
D T LWH RLGH+S KG+ LL K+G GN + L FC+ CV+GKQ
Sbjct: 402 VTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQ 461
Query: 117 QKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
++V F + + L+Y+H+D+WGPS VP++GG
Sbjct: 462 KRVSFSTATHRTKG----TLDYIHSDLWGPSKVPSYGG 495
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 190 bits (483), Expect = 3e-54
Identities = 104/276 (37%), Positives = 148/276 (53%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ +C K K NQKP S+SDN + ++ V+N +S +
Sbjct: 8 GHWKNDCPKKK----NQKPTAVTVQESTSSSDN-----------ELVLSIVDNHQQSADQ 52
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++DS C++HM P R F Y + + G V M N+ CK GIG + L+ +G TL V
Sbjct: 53 WVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEV 112
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS L+S G + NGVM+I +GS +V + K NLY+L
Sbjct: 113 RHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKGNLYMLQGSTS--SI 170
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
D+T LWH RLGH+S +G+ +L ++ GN + L FC+ CV+GKQ +
Sbjct: 171 SESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELRFCEHCVFGKQHR 230
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+KFP Q ++ L+Y+H+D WGPS VP+ GG
Sbjct: 231 IKFPK----AQHSTKSTLDYIHSDCWGPSQVPSLGG 262
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 186 bits (471), Expect = 9e-50
Identities = 98/277 (35%), Positives = 153/277 (55%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ ++C PKRG Q N+ N A+ N DV +++ ++ ++ LA +E E
Sbjct: 240 GHFKRDCPNPKRGKGESSGQKNDD-NTAAMVQNNDDVVLLINEEEECMH----LAGTESE 294
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++D+A ++H TP R +F Y +G+V M N K+ GIG++C K + GCTL LK+V
Sbjct: 295 WVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDV 354
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS AL+ DG E + N ++ KG++++AK LY +A++
Sbjct: 355 RHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAEI----- 409
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
+ DLWHKR+GH S KGL++L K+ K T+ C+ ++GKQ +
Sbjct: 410 -CQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHR 468
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGGN 1
V F Q ++L+ +++DV GP + + GGN
Sbjct: 469 VSF----QTSSERKSNILDLVYSDVCGPMEIESMGGN 501
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 180 bits (457), Expect = 4e-49
Identities = 99/276 (35%), Positives = 143/276 (51%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ K+C PK+ NQ + +A+ D+ + +++ D+ +S +
Sbjct: 170 GHWKKDC--PKKRNQ-------KSVAVAAQEDSSFENELVLSIVDNHQHSAE-------Q 213
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++DS C++HM P R F Y K G V M N+ CK GIG + +K +G TL V
Sbjct: 214 WVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEV 273
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS L + G + GVM+I KGS +V + K NLY+L
Sbjct: 274 RHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTN--LI 331
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
D+T LWH RLGH+S +G+ +L K+ G+ + L FC+ CV GK +
Sbjct: 332 SESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEHCVVGKHHR 391
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+KFP Q + L+Y+H+D WGPS VP+ GG
Sbjct: 392 IKFPK----AQHTTKSTLDYVHSDCWGPSRVPSLGG 423
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 182 bits (461), Expect = 2e-48
Identities = 98/277 (35%), Positives = 146/277 (52%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ ++C P++G Q N+ A +N V I E +L+ E E
Sbjct: 239 GHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEE-----EECMHLSGPESE 293
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++D+A + H TP R +F Y G+V M N K+ GIG++C+K + GCTL LK+V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS AL+ DG E + N ++ KGS+++AK LY +A++
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEI----- 408
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
DLWHKR+GH+S KGL++L K+ K T+ CD C++GKQ +
Sbjct: 409 -CQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHR 467
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGGN 1
V F Q ++L+ +++DV GP + + GGN
Sbjct: 468 VSF----QTSSERKLNILDLVYSDVCGPMEIESMGGN 500
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 177 bits (450), Expect = 5e-47
Identities = 96/282 (34%), Positives = 151/282 (53%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTK-----PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I +C K + G K + E+ A +D D ++V + A
Sbjct: 243 GHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCA 294
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++D+ACT+HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 295 QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKAT-KTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA+ K+ NLY H +
Sbjct: 355 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLY--HLQ 412
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH+S GL L K G ++ L FC+ C+
Sbjct: 413 GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCI 472
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 473 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 510
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 177 bits (449), Expect = 7e-47
Identities = 95/278 (34%), Positives = 155/278 (55%), Gaps = 1/278 (0%)
Frame = -3
Query: 831 GHYIKECTK-PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSEL 655
GH+ K+C K +R Q+ +N +++LA +++ M++ + D+++ +++A
Sbjct: 228 GHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPA-MVLLATDETLVVTDSIAN--- 283
Query: 654 EWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKN 475
EW++D+ C+FHMTP + F D+ ++ G V M N+ V GIG++ ++ +G + L +
Sbjct: 284 EWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTD 343
Query: 474 VRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXX 295
VR++P+++ NLIS LE G K +G++KI+KG + K K LY+L E
Sbjct: 344 VRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTE--- 400
Query: 294 XXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQ 115
D T LWH RLGH+S KG+E+L K+GC + + L FC+ CVYGKQ
Sbjct: 401 --EGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQH 458
Query: 114 KVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGGN 1
+V F P Q + + L Y+H+D+WG P GN
Sbjct: 459 RVSF----APAQHVTKEKLAYVHSDLWGSPHNPASLGN 492
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 176 bits (446), Expect = 9e-47
Identities = 95/276 (34%), Positives = 147/276 (53%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ K+C K K+ + + PQ+ A S +++ D +V+ L E
Sbjct: 263 GHWKKDCPKLKK--KGKAPQDVNVAECKSDAES------------DFSLAVSRLTSHPDE 308
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++DS CT+HMTP R F ++ ++ G V M N+ CK GIG++ L+ +G T LK+V
Sbjct: 309 WILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRILKDV 368
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
R+VP+L +LIS LES GLE + +G++K+ G++++ K + NLY
Sbjct: 369 RYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTA 428
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
+ T LWH RLG K L+ L K+G K+ L FC+ CV KQ+K
Sbjct: 429 AVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRK 488
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
VKF + + + +L+Y+H+DVWGP+ P+ GG
Sbjct: 489 VKFGTGIHNTKG----ILDYVHSDVWGPAKTPSLGG 520
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 174 bits (442), Expect = 6e-46
Identities = 96/282 (34%), Positives = 149/282 (52%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQ-----KPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I EC K + ++ K + E+ A +D D ++V + A
Sbjct: 152 GHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCA 203
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++D+ACT+HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 204 QTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 263
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA K NLY H +
Sbjct: 264 TLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLY--HLR 321
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH+S GL L K G + L FC+ C+
Sbjct: 322 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCI 381
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 382 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 419
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 170 bits (431), Expect = 2e-45
Identities = 97/276 (35%), Positives = 141/276 (51%)
Frame = -3
Query: 831 GHYIKECTKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELE 652
GH+ K+C PK+ NQ + +A+ D+ + +++ D+ + V +
Sbjct: 222 GHWKKDC--PKKRNQ-------KSVVVAAQEDSSFENELVLSIVDNHQHFVE-------Q 265
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++DS C++HM P R F Y K G V M N+ CK IG + +K +G TL V
Sbjct: 266 WVLDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEV 325
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS L++ G + GVM+I KGS IV + K NLY+L
Sbjct: 326 RHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGSTN--LI 383
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
D+T LWH RLGH+S +G+ +L K+ + + L FC+ CV GK +
Sbjct: 384 SESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHTVKELKFCEHCVLGKHHR 443
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
KFP Q + L+Y+H++ WGPS VP+ GG
Sbjct: 444 SKFPK----AQHTTKSTLDYVHSNCWGPSRVPSLGG 475
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 172 bits (437), Expect = 2e-45
Identities = 98/281 (34%), Positives = 154/281 (54%), Gaps = 4/281 (1%)
Frame = -3
Query: 831 GHYIKEC----TKPKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAK 664
GH+ K+C K K+GN ++K E +N+ + + + + ES D+ V+N
Sbjct: 251 GHFKKQCYVWKEKNKKGNNSEK---GESSNVIGQAADAAALAVREESNADN-QEVDN--- 303
Query: 663 SELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLT 484
EW++D+ C+FHMTP R F ++ + G V MAN+ ++ GIG++ ++ D+ T+
Sbjct: 304 ---EWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVL 360
Query: 483 LKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLE 304
LKNVR+VP +S NLIS LE G + G +K++KG M + K K LY+L +
Sbjct: 361 LKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVV- 419
Query: 303 XXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYG 124
D + +WH RL H+S + +++L K+GC +K+N L FC+ CVYG
Sbjct: 420 ----VTGNANAVTSSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDCVYG 475
Query: 123 KQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGGN 1
K +V F S + + + LEY+H+D+WG SVP GN
Sbjct: 476 KTHRVGFGS----AKHVTREKLEYIHSDLWGAPSVPNSLGN 512
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 173 bits (438), Expect = 2e-45
Identities = 94/282 (33%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTK-----PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I +C K + G K + ++ A +D D ++V + A
Sbjct: 60 GHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLV--------AYAGCA 111
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++D+ACT+HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 112 QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 171
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 172 TLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLQ 229
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH+S GL L G + L FC+ C+
Sbjct: 230 GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCI 289
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 290 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 327
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 173 bits (438), Expect = 2e-45
Identities = 94/282 (33%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTK-----PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I +C K + G K + ++ A +D D ++V + A
Sbjct: 228 GHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLV--------AYAGCA 279
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++D+ACT+HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 280 QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 339
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 340 TLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLQ 397
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH+S GL L G + L FC+ C+
Sbjct: 398 GTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCI 457
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 458 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 495
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 172 bits (436), Expect = 3e-45
Identities = 94/270 (34%), Positives = 145/270 (53%), Gaps = 2/270 (0%)
Frame = -3
Query: 807 KPKR-GNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELEWLIDSAC 631
K KR G K + E+ A +D D ++V + A++ +W++D+AC
Sbjct: 87 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCAQTSDQWILDTAC 138
Query: 630 TFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNVRHVPDLS 451
T+HM P R F Y V G+V M ++ C+V GIG V +K +GC TL +VRH+P+L
Sbjct: 139 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLK 198
Query: 450 NNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAKLEXXXXXXXXXX 274
+LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 199 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLRGTTILGNVAAVS 256
Query: 273 XXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQKVKFPSP 94
+D T+LWH RLGH+S GL L K G + L FC+ C++GK ++VKF +
Sbjct: 257 DSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 316
Query: 93 VQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+ +L+Y+H+D+WGP+ + GG
Sbjct: 317 THTTEG----ILDYVHSDLWGPARKTSFGG 342
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 172 bits (436), Expect = 3e-45
Identities = 94/270 (34%), Positives = 145/270 (53%), Gaps = 2/270 (0%)
Frame = -3
Query: 807 KPKR-GNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLAKSELEWLIDSAC 631
K KR G K + E+ A +D D ++V + A++ +W++D+AC
Sbjct: 87 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCAQTSDQWILDTAC 138
Query: 630 TFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNVRHVPDLS 451
T+HM P R F Y V G+V M ++ C+V GIG V +K +GC TL +VRH+P+L
Sbjct: 139 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLK 198
Query: 450 NNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAKLEXXXXXXXXXX 274
+LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 199 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLRGTTILGNVAAVS 256
Query: 273 XXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQKVKFPSP 94
+D T+LWH RLGH+S GL L K G + L FC+ C++GK ++VKF +
Sbjct: 257 DSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 316
Query: 93 VQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+ +L+Y+H+D+WGP+ + GG
Sbjct: 317 THTTEG----ILDYVHSDLWGPARKTSFGG 342
>gb|KYP38720.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 242
Score = 160 bits (406), Expect = 5e-45
Identities = 81/216 (37%), Positives = 115/216 (53%)
Frame = -3
Query: 651 WLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTLTLKNV 472
W++DS C++HM P R F Y K G V M N+ CK GI + +K +G TL V
Sbjct: 1 WVLDSGCSYHMCPIRSWFLTYEKKSGGDVFMGNDMACKTIGIRTIQIKMHDGVIRTLTEV 60
Query: 471 RHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKATKTRNLYVLHAKLEXXXX 292
RHVPDL NLIS L++ G + M+I KGS++V + NLY+L
Sbjct: 61 RHVPDLKKNLISVGVLDTKGFKCNVEGEAMEISKGSIVVIRGINKGNLYMLQGSTN--SI 118
Query: 291 XXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCVYGKQQK 112
D+T LW+ LGH+S +G+ +L K+ G+ + L FC+ CV+GK +
Sbjct: 119 SESISVTDKHTPDLTHLWYMLLGHMSERGMMVLSKQQLLGDHIIKELKFCEHCVFGKYHR 178
Query: 111 VKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+KFP Q + L+Y+H+D WGPS VP+ GG
Sbjct: 179 IKFPK----AQHTTKSTLDYVHSDCWGPSRVPSLGG 210
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 172 bits (435), Expect = 6e-45
Identities = 94/282 (33%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTK-----PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I EC K + G K + E+ A +D D ++V + A
Sbjct: 243 GHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCA 294
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++++AC +HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 295 QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 355 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLR 412
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH++ GL L K G + L FC+ C+
Sbjct: 413 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 472
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 473 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 510
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 172 bits (435), Expect = 6e-45
Identities = 94/282 (33%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Frame = -3
Query: 831 GHYIKECTK-----PKRGNQNQKPQNNEQANLASTSDNLGDVFMIVESCDDSVNSVNNLA 667
GH I EC K + G K + E+ A +D D ++V + A
Sbjct: 450 GHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV--------AYAGCA 501
Query: 666 KSELEWLIDSACTFHMTPYRHMFTDYTKVMHGSVSMANEKKCKVFGIGNVCLKFDNGCTL 487
++ +W++++AC +HM P R F Y V G+V M ++ C+V GIG V +K +GC
Sbjct: 502 QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 561
Query: 486 TLKNVRHVPDLSNNLISCAALESDGLEGKWGNGVMKILKGSMIVAKA-TKTRNLYVLHAK 310
TL +VRH+P+L +LIS L+ G + G+G++K+ KGS++V KA K+ NLY H +
Sbjct: 562 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY--HLR 619
Query: 309 LEXXXXXXXXXXXXXXXNDMTDLWHKRLGHISSKGLELLHKEGCFGNDKLNTLSFCDSCV 130
+D T+LWH RLGH++ GL L K G + L FC+ C+
Sbjct: 620 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 679
Query: 129 YGKQQKVKFPSPVQPKQSASCDVLEYLHADVWGPSSVPTHGG 4
+GK ++VKF + + +L+Y+H+D+WGP+ + GG
Sbjct: 680 FGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGG 717