BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00045771
         (1392 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]           927   0.0  
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]           907   0.0  
gb|AKN59247.1| polyprotein [Lychnis mottle virus]                     906   0.0  
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...   864   0.0  
ref|YP_227372.1| protease [Strawberry latent ringspot virus]          495   e-173
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]        349   e-110
ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557...    91   1e-15
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]               78   1e-11
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270...    76   6e-11
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]                    75   1e-10
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523...    74   3e-10
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]...    69   9e-09
gb|AIT59085.1| polyprotein [Motherwort yellow mottle virus]            67   3e-08
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ...    66   6e-08
ref|NP_619518.1| polyprotein [Cowpea severe mosaic virus] gi|549...    66   8e-08
ref|NP_734062.1| RNA-dependent RNA polymerase [Cowpea severe mos...    65   1e-07
gb|AHN52254.1| polyprotein, partial [Currant latent virus]             65   1e-07
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]          65   1e-07
gb|AEX30951.1| polyprotein 1, partial [uncultured virus]               59   2e-06
gb|AEX30943.1| polyprotein 1, partial [uncultured virus]               59   2e-06

>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 2205

 Score =  927 bits (2397), Expect = 0.0
 Identities = 454/464 (97%), Positives = 457/464 (98%)
 Frame = +1

Query: 1    SGRERRRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 180
            SGRERRRYLLEASG GAVEAK QDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL
Sbjct: 1261 SGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 1320

Query: 181  MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE 360
            MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE
Sbjct: 1321 MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE 1380

Query: 361  KWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 540
            KWLLSSHDPFMAGSGWFMEMLFRD+GVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV
Sbjct: 1381 KWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 1440

Query: 541  RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSG 720
            RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD IIAGSG
Sbjct: 1441 RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAIIAGSG 1500

Query: 721  SLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQAT 900
            SLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS APRQAT
Sbjct: 1501 SLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAPRQAT 1560

Query: 901  TSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV 1080
            TSEIRKSSISADLE LTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV
Sbjct: 1561 TSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV 1620

Query: 1081 TEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1260
            TEEEQKIWDLTWDSIFDLPGGI KKC LLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN
Sbjct: 1621 TEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1680

Query: 1261 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC 1392
            RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC
Sbjct: 1681 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC 1724


>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 2209

 Score =  907 bits (2343), Expect = 0.0
 Identities = 437/464 (94%), Positives = 456/464 (98%)
 Frame = +1

Query: 1    SGRERRRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 180
            SGRERRRYLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL
Sbjct: 1265 SGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 1324

Query: 181  MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE 360
            MVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPVLK+E
Sbjct: 1325 MVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPVLKLE 1384

Query: 361  KWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 540
            KWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV
Sbjct: 1385 KWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 1444

Query: 541  RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSG 720
            RYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSG
Sbjct: 1445 RYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSG 1504

Query: 721  SLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQAT 900
            SLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS+APRQAT
Sbjct: 1505 SLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAPRQAT 1564

Query: 901  TSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV 1080
            +SEI+KSSISADLE+LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPV
Sbjct: 1565 SSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPV 1624

Query: 1081 TEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1260
            TE+E+KIW+LTWDSIFDLPGGI  KC LLSEDENLNGVNGDNEYRGMVV+TSEGWPEVLN
Sbjct: 1625 TEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWPEVLN 1684

Query: 1261 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC 1392
            RKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPC
Sbjct: 1685 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPC 1728


>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
          Length = 2260

 Score =  906 bits (2341), Expect = 0.0
 Identities = 438/464 (94%), Positives = 454/464 (97%)
 Frame = +1

Query: 1    SGRERRRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 180
            SGRERRRYLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL
Sbjct: 1316 SGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 1375

Query: 181  MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE 360
            MVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLK+E
Sbjct: 1376 MVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLE 1435

Query: 361  KWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 540
            KWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV
Sbjct: 1436 KWLLSSHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 1495

Query: 541  RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSG 720
            RYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSG
Sbjct: 1496 RYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSG 1555

Query: 721  SLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQAT 900
            SLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS+APRQAT
Sbjct: 1556 SLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQAT 1615

Query: 901  TSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV 1080
            +SEI+KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPV
Sbjct: 1616 SSEIKKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPV 1675

Query: 1081 TEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1260
            TEEE+K+W+LTWDSIFDLPGGI  KC LL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLN
Sbjct: 1676 TEEEEKVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1735

Query: 1261 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC 1392
            RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPC
Sbjct: 1736 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPC 1779


>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 2227

 Score =  864 bits (2233), Expect = 0.0
 Identities = 418/464 (90%), Positives = 445/464 (95%)
 Frame = +1

Query: 1    SGRERRRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVL 180
            SGRERRRYLLEASG GA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVL
Sbjct: 1283 SGRERRRYLLEASGPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVL 1342

Query: 181  MVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIE 360
            MVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+E
Sbjct: 1343 MVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLE 1402

Query: 361  KWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCV 540
            KWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCV
Sbjct: 1403 KWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCV 1462

Query: 541  RYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSG 720
            RYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSG
Sbjct: 1463 RYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSG 1522

Query: 721  SLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQAT 900
            SL+T+EEYLEASLLLG+IKHPLETDRIQASGCLSG+EFFDAETVFPEGLL PS APRQAT
Sbjct: 1523 SLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGDEFFDAETVFPEGLLLPSQAPRQAT 1582

Query: 901  TSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPV 1080
            +SEI KSSIS  LE L GEKRKTEPAII NRDTRL DR+LDIFKKGM+KYKAVAADMSPV
Sbjct: 1583 SSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLKDRNLDIFKKGMMKYKAVAADMSPV 1642

Query: 1081 TEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1260
            T+EE+KIW++TWDSIFDLPGGI  KC LLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN
Sbjct: 1643 TDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1702

Query: 1261 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPC 1392
            RKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D L ATTIPC
Sbjct: 1703 RKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDALSATTIPC 1746


>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
          Length = 257

 Score =  495 bits (1274), Expect = e-173
 Identities = 235/257 (91%), Positives = 252/257 (98%)
 Frame = +1

Query: 40  GSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 219
           G GA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1   GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60

Query: 220 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAG 399
           YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAG
Sbjct: 61  YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120

Query: 400 SGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 579
           SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180

Query: 580 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASL 759
           NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240

Query: 760 LLGEIKHPLETDRIQAS 810
           LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257


>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
          Length = 675

 Score =  349 bits (896), Expect = e-110
 Identities = 170/194 (87%), Positives = 180/194 (92%)
 Frame = +1

Query: 811  GCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHN 990
            GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS  LE L GEKRKTEPAII N
Sbjct: 1    GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60

Query: 991  RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLS 1170
            RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI  KC LLS
Sbjct: 61   RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120

Query: 1171 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1350
            EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121  EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180

Query: 1351 ILDMDELCATTIPC 1392
            ILD+D L ATTIPC
Sbjct: 181  ILDLDALSATTIPC 194


>ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557892|gb|ALT45950.1|
            polyprotein [Currant latent virus]
          Length = 2124

 Score = 90.9 bits (224), Expect = 1e-15
 Identities = 111/431 (25%), Positives = 187/431 (43%), Gaps = 17/431 (3%)
 Frame = +1

Query: 70   DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 243
            +++  + +L KH + F + D     Y  IALGG   L+  HV+  +    Y +   ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261

Query: 244  TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFM--E 417
               +  NR   + Q L  +DLVIV+ P T   F  L  + +L +  +     +   +  E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320

Query: 418  MLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 588
              +    V ++ ++   +T L      D Y    L  + +  C  YT   DT        
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370

Query: 589  FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLG 768
             Y   C +PL+   G G+ + +  +HVV + S T       G   ++T +++ E      
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEV----- 1415

Query: 769  EIKHPLETDRIQASG----CL--SGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 930
                PL++  +   G    C+  +  E + + T   +       AP     + +  S IS
Sbjct: 1416 ----PLQSGTLVGEGPECYCIPTASSECYGSVTKLGKWT---GPAPYFLEKTSLVPSMIS 1468

Query: 931  ADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKI 1101
             D++I    +  TEPAI+  +D RL   +D   + FK GMLKY   A   +    E+++ 
Sbjct: 1469 KDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----EDEEF 1520

Query: 1102 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1278
            ++   D +F ++P      C+ L++DE  NG+  D     +V+ TSEG+P    R  G  
Sbjct: 1521 FEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPAGAT 1577

Query: 1279 GKERFLLGLPG 1311
            GK     G PG
Sbjct: 1578 GKSWLFCGSPG 1588


>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
          Length = 795

 Score = 77.8 bits (190), Expect = 1e-11
 Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 13/262 (4%)
 Frame = +1

Query: 580  NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITREEYL 747
            + +     CG    A  G    G G+    + ++H  +  ++   +  G G+ +T+E+ +
Sbjct: 22   HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81

Query: 748  EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SNAPRQATTSEI 912
               +LL         D +    CL   E        + V   G L+  S+AP  +  +++
Sbjct: 82   GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132

Query: 913  RKSSISADLEILTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 1083
             +S IS  +++      +T PAII N D R+    +   D+F  GM KYK +A     V 
Sbjct: 133  ERSLISDIVDLPC----ETVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188

Query: 1084 -EEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1260
              +EQ+ +    D IFD      +    +SE+  L G+     +  +V STSEG+P +L 
Sbjct: 189  GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248

Query: 1261 RKNGEAGKERFLLGLPGCYTLN 1326
            R +G  GK   L G+PGC++++
Sbjct: 249  RPSGCKGKAWLLEGVPGCFSVD 270


>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
            gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            Contains: RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|50399319|emb|CAF21713.1| polyprotein
            [Cherry rasp leaf virus]
          Length = 2250

 Score = 75.9 bits (185), Expect = 6e-11
 Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 14/433 (3%)
 Frame = +1

Query: 55   EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 222
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C    Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375

Query: 223  KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGS 402
                       +   + C   +L  +DLVIV  P +   F  L  + +L +        +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433

Query: 403  GWFM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 567
               +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T 
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490

Query: 568  TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYL 747
                    Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ 
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533

Query: 748  EASLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSS 924
            + +L     + P E     + S C        A T      LE ++         +  S 
Sbjct: 1534 DVALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTS---------LIPSL 1584

Query: 925  ISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQ 1095
            IS  +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ 
Sbjct: 1585 ISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636

Query: 1096 KIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 1272
            ++++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R  G
Sbjct: 1637 EVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693

Query: 1273 EAGKERFLLGLPG 1311
             +GK     G PG
Sbjct: 1694 ASGKSWLFAGAPG 1706


>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
          Length = 2235

 Score = 75.1 bits (183), Expect = 1e-10
 Identities = 105/431 (24%), Positives = 172/431 (39%), Gaps = 12/431 (2%)
 Frame = +1

Query: 55   EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 228
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C     
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360

Query: 229  GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 408
            G         +  +     +L  +DLVIV  P +   F  L  + +L +        +  
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420

Query: 409  FM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 573
             +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T   
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475

Query: 574  YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEA 753
                  Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ + 
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDV 1520

Query: 754  SLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 930
            +L     + P E     + S C        A T      LE +          +  S IS
Sbjct: 1521 ALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTT---------LIPSLIS 1571

Query: 931  ADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQKI 1101
              +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ ++
Sbjct: 1572 TSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623

Query: 1102 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1278
            ++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R  G +
Sbjct: 1624 FEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680

Query: 1279 GKERFLLGLPG 1311
            GK     G PG
Sbjct: 1681 GKSWLFAGAPG 1691


>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
            polyprotein [Arracacha virus B]
          Length = 2314

 Score = 73.9 bits (180), Expect = 3e-10
 Identities = 118/459 (25%), Positives = 187/459 (40%), Gaps = 23/459 (5%)
 Frame = +1

Query: 79   SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 252
            SEL S  KH+    +I   +  Y  + + G + L V HV+  +  G Y+  VG       
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288

Query: 253  FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDP--------FMAGSGW 408
            F  NR   + + L  KDL IV    T   F  L   K LL   +         F   S  
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVPPFAPLA--KRLLFDEEEKLPRQALGFFCHSEP 1346

Query: 409  FMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 588
            ++E L R +G+     ++ + T+ +  D+        + L K  +Y +    G       
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398

Query: 589  FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITRE-EYLEASLLL 765
                 CG  L+       G+KI  +H     +   K +I   + ++  ++ E    S  +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446

Query: 766  GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEI 945
            GE +  L         C +GE    A     EGL      P   T + +  S IS+DL+ 
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496

Query: 946  LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDL 1110
                   +   PAI+H+RD R+ +      D FK GMLKY   A       E+ Q   D 
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556

Query: 1111 TWDSIFDL-------PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1269
             +  I DL              CR+L+E++ LNG    +    +V  T+EG+P    R  
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616

Query: 1270 GEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI 1386
            G++GK   L G+PG ++L ++ P+   I  +++  A  +
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEV 1655


>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
            gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
            spherical virus]
          Length = 2079

 Score = 68.9 bits (167), Expect = 9e-09
 Identities = 102/430 (23%), Positives = 176/430 (40%), Gaps = 16/430 (3%)
 Frame = +1

Query: 70   DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV-GSLTKT 246
            D    + +L KH +   + ++    Y  IALG    L   HVW  + +  Y + G     
Sbjct: 1150 DQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAK 1208

Query: 247  FPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS-SHDPFMAGSGWFM-EM 420
                +N       +L  +DLV+V  P +   F  L  + +L + +  P +A +   + E 
Sbjct: 1209 NKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEP 1268

Query: 421  LFRDNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFF 591
            L+    V ++ ++   +  L    + D Y    L    +  C  YT   DT  G      
Sbjct: 1269 LYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLGSKPMPACYSYTF--DTFAGL----- 1321

Query: 592  YVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLL--- 762
                C +PL++  G G+ + +  +HV         D    G   ++T E++ + +     
Sbjct: 1322 ----CTSPLISMDG-GRCV-LLGLHVA-------GDKSKMGYAQIVTLEDFSDINFSEKV 1368

Query: 763  -LGEIKHPLETDRIQASG--CLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISA 933
              G  +  + T R ++ G  CL G ++   +  F E           + T  +    I  
Sbjct: 1369 GQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFLE---------NSSLTPSLIHDCIDI 1418

Query: 934  DLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIW 1104
            D+         TEPAI+  +D RL   +++  D F  GM KY   A       +E+++++
Sbjct: 1419 DM--------TTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELF 1466

Query: 1105 DLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAG 1281
            +   D +F ++P      C  LS D+  NG+  D+   G+V+ T+EG+P    R  G  G
Sbjct: 1467 EDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTG 1523

Query: 1282 KERFLLGLPG 1311
            K     G PG
Sbjct: 1524 KTWLFAGSPG 1533


>gb|AIT59085.1| polyprotein [Motherwort yellow mottle virus]
          Length = 2191

 Score = 67.4 bits (163), Expect = 3e-08
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 14/225 (6%)
 Frame = +1

Query: 736  EEYLEASLLLGEIKHPLETDRIQASG-CLSGEEF-------FDAETVFPEGLLEPSNAPR 891
            +E   +++   +++  L T +++A G C    +        F+ + V   G + P  A  
Sbjct: 1086 KESCASAIYREDLEELLPTPKLEAQGPCAQLRQLRQVDTNPFEIKQVALVGRMPPELAVN 1145

Query: 892  QATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAA-- 1065
                + +RKS I  +LE   G    TEP+I+  RDTR      D + KG+ K+   A   
Sbjct: 1146 VPHKTTLRKSEIFEELETHLGP-HLTEPSILTIRDTRAAS--FDPYVKGVEKFNETACNF 1202

Query: 1066 --DMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSE 1239
              +++ +  +  K   L       +PGG   K  +  E E LNG+ G+  Y  M +STS 
Sbjct: 1203 DNEVAQIVMQHMKASLLANLERISVPGG---KPIVRGEHEILNGIPGEKFYDAMDMSTSC 1259

Query: 1240 GWPEVLNRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE 1368
            G+P  L+    E GK +  +L G PG Y L+R  P+Y+    MD+
Sbjct: 1260 GYPFSLS----EFGKNKRGYLDGEPGDYMLHRSRPVYEEFCRMDD 1300


>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
          Length = 707

 Score = 65.9 bits (159), Expect = 6e-08
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
 Frame = +1

Query: 919  SSISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEE 1089
            S IS  +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E
Sbjct: 40   SLISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DE 91

Query: 1090 EQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRK 1266
            + ++++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R 
Sbjct: 92   DLEVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRP 148

Query: 1267 NGEAGKERFLLGLPG 1311
             G +GK     G PG
Sbjct: 149  AGASGKSWLFAGAPG 163


>ref|NP_619518.1| polyprotein [Cowpea severe mosaic virus]
            gi|549316|sp|P36312.1|POL1_CPSMV RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            AltName: Full=32 kDa protein; Contains: RecName:
            Full=Putative helicase; AltName: Full=58 kDa protein;
            AltName: Full=Membrane-binding protein; AltName:
            Full=NTP-binding protein; Short=NTB; Contains: RecName:
            Full=Viral genome-linked protein; AltName: Full=VPg;
            Contains: RecName: Full=Picornain 3C-like protease;
            Short=3C-like protease; AltName: Full=24 kDa protein;
            Contains: RecName: Full=RNA-directed RNA polymerase;
            AltName: Full=87 kDa protein
          Length = 1858

 Score = 65.9 bits (159), Expect = 8e-08
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
 Frame = +1

Query: 799  IQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSS-ISADLEILTGEKRKTEP 975
            +QA       +F + E    EG+ +  N  +        K++ +    E   G ++  EP
Sbjct: 1143 VQAQAAEKFFDFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTEKTKEP 1202

Query: 976  AIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEE--QKIWDLTWDSIFDLPGGIG 1149
            +I+ + D RL D+  D F  G+ KY    A+   + ++E  + +     +  FD      
Sbjct: 1203 SILSSTDLRLGDKQYDPFVGGIQKY----AEPMGILDDEVLRHVATDIVEEWFDCVDPQE 1258

Query: 1150 KKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR 1329
                 +     +NG+ G      + ++TSEG+P +L RK+GE GK RF+ G    + L  
Sbjct: 1259 DTFEEVDLQVAINGLEGMEYMERVPMATSEGFPHILTRKSGEKGKGRFVYGDGEIFDLIP 1318

Query: 1330 DLPMYQRILDMDELCATTIP 1389
               +++  L ++E CA T+P
Sbjct: 1319 GTSVHEAYLTLEETCADTVP 1338


>ref|NP_734062.1| RNA-dependent RNA polymerase [Cowpea severe mosaic virus]
          Length = 712

 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
 Frame = +1

Query: 820  SGEEFFD---AETVFPEGLLEPSNAPRQATTSEIRKSS-ISADLEILTGEKRKTEPAIIH 987
            + E+FFD    E    EG+ +  N  +        K++ +    E   G ++  EP+I+ 
Sbjct: 1    AAEKFFDFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTEKTKEPSILS 60

Query: 988  NRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEE--QKIWDLTWDSIFDLPGGIGKKCR 1161
            + D RL D+  D F  G+ KY    A+   + ++E  + +     +  FD          
Sbjct: 61   STDLRLGDKQYDPFVGGIQKY----AEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFE 116

Query: 1162 LLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPM 1341
             +     +NG+ G      + ++TSEG+P +L RK+GE GK RF+ G    + L     +
Sbjct: 117  EVDLQVAINGLEGMEYMERVPMATSEGFPHILTRKSGEKGKGRFVYGDGEIFDLIPGTSV 176

Query: 1342 YQRILDMDELCATTIP 1389
            ++  L ++E CA T+P
Sbjct: 177  HEAYLTLEETCADTVP 192


>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
          Length = 721

 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
 Frame = +1

Query: 883  APRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 1053
            AP     + +  S IS D++I    +  TEPAI+  +D RL   +D   + FK GMLKY 
Sbjct: 50   APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105

Query: 1054 AVAADMSPVTEEEQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVS 1230
              A   +    E+++ ++   D +F ++P      C+ L++DE  NG+  D     +V+ 
Sbjct: 106  VEAHGFN----EDEEFFEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQ 158

Query: 1231 TSEGWPEVLNRKNGEAGKERFLLGLPG 1311
            TSEG+P    R  G  GK     G PG
Sbjct: 159  TSEGYPFCTQRPAGATGKSWLFCGSPG 185


>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
          Length = 2223

 Score = 65.5 bits (158), Expect = 1e-07
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
 Frame = +1

Query: 880  NAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAV 1059
            N P + T   +RKS I   +  + G    TEP+I+ + D R      D + KG+ K+   
Sbjct: 1158 NVPHKTT---LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNET 1213

Query: 1060 AADMSPVTEE---EQKIWDLTWDSI-FDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVV 1227
            A      T E   +    DL  + +  D+PGG   K  + SE E LNG+ G+  Y  M +
Sbjct: 1214 ACCFDHETVEVALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDM 1270

Query: 1228 STSEGWPEVLNRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE 1368
            ST+ G+P  L+    E GK +  +L G PG Y L+R+ P++   +++DE
Sbjct: 1271 STACGYPYTLS----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDE 1315


>gb|AEX30951.1| polyprotein 1, partial [uncultured virus]
          Length = 241

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
 Frame = +1

Query: 973  PAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAA--DMSPVTEEEQKIWDLTWDSIFDLP 1137
            P+II   D R+ +      + ++ G+LKY   A   DM  + E   +I  + +D+  +L 
Sbjct: 44   PSIISREDPRIKESGNPEFNPYQTGILKYSDCADGFDMDVMQEAMDEIVQIWFDANEELE 103

Query: 1138 GGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPG 1311
                     +S D  +NGV G      +V+ST+EG+P  L RKNGE GK R+  G+PG
Sbjct: 104  D--------VSLDVAINGVPGVEYLEPLVMSTAEGYPYCLERKNGETGKRRYFEGVPG 153


>gb|AEX30943.1| polyprotein 1, partial [uncultured virus]
          Length = 245

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
 Frame = +1

Query: 973  PAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAA--DMSPVTEEEQKIWDLTWDSIFDLP 1137
            P+II   D R+ +      + ++ G+LKY   A   DM  + E   +I  + +D+  +L 
Sbjct: 107  PSIISREDPRIKESGNPEFNPYQTGILKYSDCADGFDMDVMQEAMDEIVQIWFDANEELE 166

Query: 1138 GGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPG 1311
                     +S D  +NGV G      +V+ST+EG+P  L RKNGE GK R+  G+PG
Sbjct: 167  D--------VSLDVAINGVPGVEYLEPLVMSTAEGYPYCLERKNGETGKRRYFEGVPG 216