BLASTX nr result
ID: Rehmannia27_contig00045242
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00045242
(2084 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP42321.1| Copia protein [Cajanus cajan] 391 e-160
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 380 e-157
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo... 374 e-156
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 360 e-156
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 357 e-156
gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposo... 375 e-155
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 368 e-155
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 367 e-154
gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposo... 378 e-153
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 358 e-153
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 352 e-151
ref|XP_013664987.1| PREDICTED: uncharacterized protein LOC106369... 369 e-151
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 367 e-150
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab... 327 e-149
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 377 e-148
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 350 e-148
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo... 346 e-148
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 346 e-147
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo... 341 e-147
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t... 335 e-146
>gb|KYP42321.1| Copia protein [Cajanus cajan]
Length = 1456
Score = 391 bits (1005), Expect(3) = e-160
Identities = 191/378 (50%), Positives = 256/378 (67%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+FE+FSPV K +VR L++LA W LH +D++NAFLHG L EEVYM PP G+ + P
Sbjct: 1024 YFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFKLSHPR 1083
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L +SLYGLKQASRQWN + +E LI F+QS+ D+ LF+K+ + L++YVDDV
Sbjct: 1084 LVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLVYVDDV 1143
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++TG I ++K YLH F IKDLG K+FLGLE+ RS G L+QRKY ++LL + G
Sbjct: 1144 VLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLEIARSQSGLILNQRKYCLELLSEHG 1203
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
L CKPVSTP + A +G D FRRLIGRLLYL +RPDIS+ +QQLSQFV
Sbjct: 1204 LTDCKPVSTPIDASVKLYASEGLPLDDPTIFRRLIGRLLYLTNTRPDISFAVQQLSQFVD 1263
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
+P H+ AA+ +L+YLK +P+LGLFYP H A+ D+DW +C TRRS+TG+CIF+
Sbjct: 1264 SPRATHFQAALRILRYLKSSPALGLFYPSQTEHRIQAFSDSDWASCPNTRRSVTGFCIFY 1323
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G +L S+EAEYR++A+ CELQWLL + DL I+ P ++CD+++
Sbjct: 1324 GSALISWKSKKQSTVSRSSSEAEYRALASVTCELQWLLFLCHDLSINIPTPFSIFCDSQS 1383
Query: 55 ALHITANPVFHERTKHLD 2
A++I NP FHERTKH++
Sbjct: 1384 AIYIAKNPTFHERTKHIE 1401
Score = 199 bits (506), Expect(3) = e-160
Identities = 123/359 (34%), Positives = 175/359 (48%), Gaps = 49/359 (13%)
Frame = -3
Query: 2049 KYQKKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPH 1870
K K+FW + + A HI+N LP+ LL KSP+E++ P VFGCL +A+TL
Sbjct: 683 KLPKQFWSFAVKQATHIINRLPTPLLSQKSPFEMIYNCKPDLTELKVFGCLAFATTLSSK 742
Query: 1869 RRKFEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHA---------- 1720
R K + RAS C+FLGY G KG+ L++L +K ISRDV+FYE FP+ A
Sbjct: 743 RTKLDRRASKCIFLGYKNGTKGFLLFNLHNKSFLISRDVLFYEKIFPYSAHVPSMSASDS 802
Query: 1719 ------------------------IASPSVEL--PLPMSFPDYPEDDDTHIAIDSGKQHP 1618
SPS+ L PLP S D I++
Sbjct: 803 LLLDVVKDNDTTIYSDPFPTTTFSHGSPSIPLDTPLPSSETTISTDRPPFSPINTCPIPT 862
Query: 1617 VTSSAPKIPE-------------HLGRGHRVKTQPRWLSDYVTNSVQVGLPEISKGSLAQ 1477
T S P++P R++ PR+L +Y ++ + +
Sbjct: 863 ATLSTPELPSSNTTNDASQVVMPQTRVSTRIRKPPRYLQEYYCENL----------ASSS 912
Query: 1476 IQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYSQAAQDKGWVEAMNKELQA 1297
+ Y L F ++ SPS+ +F I+ EP+++ +A ++ W AM ELQA
Sbjct: 913 AASNCLYPLSSFVTYNN--CSPSHTSFCLSISAQH-EPTSFKEANSEECWRRAMEAELQA 969
Query: 1296 LEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
LE N+TW L LP GK+ +G KWVY++K DGS+ERYKARLVAKG+ EG+D+ F
Sbjct: 970 LEKNQTWSLVRLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETF 1028
Score = 25.8 bits (55), Expect(3) = e-160
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 2083 LEIARALLFQSKVPKK 2036
L + RALLFQ+K+PK+
Sbjct: 672 LNVCRALLFQAKLPKQ 687
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 380 bits (976), Expect(2) = e-157
Identities = 193/378 (51%), Positives = 245/378 (64%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
FF++FSPVAK +VR+L++LA W L +D+NNAFLHG L+EEVYM P G + PG
Sbjct: 880 FFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLTPSFPG 939
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L+RSLYGLKQASRQW S LI G+V S D+ LF+K ++IYVDD+
Sbjct: 940 QVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAILIYVDDI 999
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++ G I L LH F IKDLG KYFLGLE+ R+ G HL QRKYI+DLL DTG
Sbjct: 1000 VLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYILDLLSDTG 1059
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
+L KPVSTP ++SA G D A +RRL+GRL+YL +RPDI+Y +QQLSQFV
Sbjct: 1060 MLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIYLTNTRPDITYAVQQLSQFVS 1119
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P AH A +L+YLKGTP G+F V + A+ D+DW C TRRS+TG+ ++
Sbjct: 1120 NPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSDWAGCPDTRRSITGFAVYL 1179
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G SL S+EAEYR++A T CELQWL + KD HI P L+CDN++
Sbjct: 1180 GDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDPISPSILYCDNQS 1239
Query: 55 ALHITANPVFHERTKHLD 2
AL I +NPVFHERTKH++
Sbjct: 1240 ALQIASNPVFHERTKHIE 1257
Score = 204 bits (519), Expect(2) = e-157
Identities = 121/308 (39%), Positives = 170/308 (55%), Gaps = 3/308 (0%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
FW + L+ A ++N +P+ L SP+E L VFGCLCY+ST+ HR K +
Sbjct: 591 FWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSHRTKLD 650
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFP-FHAIASPSVELPLPM-- 1684
PRA C+FLG+ KGY L++L + + +SR+V+F+E FP F SPS P+P+
Sbjct: 651 PRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSPVPIHY 710
Query: 1683 SFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDYVTNSVQVGLP 1504
++ DYP + I S P TS P L R R + P +L D+
Sbjct: 711 NYVDYPTFPSSSIVESSD---PPTSDQHSSPPPLRRSTRPRRPPTYLQDFHGAFTSTSTA 767
Query: 1503 EISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYSQAAQDKGWV 1324
S G I++P L S LSPS+ ++ I+ S EP +++A++ W+
Sbjct: 768 HSSTG----IRHPLHSFL------SYDLLSPSFHHYVFSIS-SVTEPKNFAEASKSDSWL 816
Query: 1323 EAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLLVE 1144
+AM++E+ ALE N TW LT LP K AIG +WVYK+K DGSI+RYKARLVAKGY +E
Sbjct: 817 KAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQME 876
Query: 1143 GIDFLRVF 1120
G+DF F
Sbjct: 877 GLDFFDTF 884
>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1445
Score = 374 bits (960), Expect(3) = e-156
Identities = 183/378 (48%), Positives = 250/378 (66%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+FE+FSPVAK +VR L+ALA+ W LH +D++NAFLHG L+EEVYM PP+G
Sbjct: 1013 YFETFSPVAKLTTVRFLLALASTNNWFLHQLDVDNAFLHGDLEEEVYMRPPQGLQLPDSK 1072
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L +SLYGLKQASR WN + + +L+ G+ QS+ D+ LF+K+ G+ L++YVDDV
Sbjct: 1073 LVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQSSADHSLFIKKQGSSITILLVYVDDV 1132
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
+++G + I +K++LH F IKDLG K+FLGLE+ RS G L+QRKY ++L+ ++G
Sbjct: 1133 VLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKKGIILNQRKYCLELIDESG 1192
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
LLG KP TP + A G D FRRLIGRLLYL +RPDIS+ +QQLSQFV
Sbjct: 1193 LLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLTNTRPDISFSVQQLSQFVS 1252
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P + H AA+ +++YLKG P LGLFYP N A+ D+DW TC TR+S+TGYC+F
Sbjct: 1253 QPREPHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSDSDWATCSTTRKSVTGYCVFL 1312
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G SL S+EAEYR++A+ CELQWL ++ L + P ++ D+++
Sbjct: 1313 GKSLVSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFLSDSLFVKIPAPFSVFSDSQS 1372
Query: 55 ALHITANPVFHERTKHLD 2
A+ I NP FHERTKH++
Sbjct: 1373 AIQIAKNPTFHERTKHIE 1390
Score = 205 bits (522), Expect(3) = e-156
Identities = 132/320 (41%), Positives = 167/320 (52%), Gaps = 13/320 (4%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AVHI+N LP+ L KSP+E++ P VFGCL YASTL R K
Sbjct: 715 KTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHKPDLHDLRVFGCLAYASTLAAGRTK 774
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFP---FHAIASPSVELPL 1690
PRAS C+FLGY +G KGY LY+L S+ +SR+VIF+E FP FH +S S + L
Sbjct: 775 LAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNVIFHETVFPYSDFHKFSSNS-DAIL 833
Query: 1689 PMSFPD------YP----EDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLS 1540
S D YP E +TH + Q P+T IP R K +P +L+
Sbjct: 834 TESTNDFAHYELYPITVLETTNTHTPSEQ-LQQPLTEEMQDIPVQPRVSTRQKFRPNYLN 892
Query: 1539 DYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPS 1360
Y S + L + + Y KC S +Y AF I+ EPS
Sbjct: 893 QYHCYSA----TSSNSACLYPLHSYLSYN-KC---------SSNYTAFCLSISAHV-EPS 937
Query: 1359 TYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYK 1180
Y+QA W +AM EL AL N TW L LP G+K IG KWVY+IK DGS++R+K
Sbjct: 938 NYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIKYKADGSVDRHK 997
Query: 1179 ARLVAKGYLLVEGIDFLRVF 1120
ARLVAKG+ EGID+ F
Sbjct: 998 ARLVAKGFTQTEGIDYFETF 1017
Score = 25.8 bits (55), Expect(3) = e-156
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 2083 LEIARALLFQSKVPK 2039
L + RALLFQS++PK
Sbjct: 701 LNVCRALLFQSQIPK 715
>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 360 bits (924), Expect(3) = e-156
Identities = 180/376 (47%), Positives = 244/376 (64%)
Frame = -2
Query: 1129 ESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPGEV 950
E+F+PVAK +VR+L++LA+ Q W LH +D+NNAFL+G L E+VYM P G+ + V
Sbjct: 1048 ETFAPVAKLTTVRVLLSLASIQGWHLHQLDVNNAFLNGDLYEDVYMQLPPGFGRKGEHRV 1107
Query: 949 CLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDVLI 770
C L +SLYGLKQASRQW ++ S L GF QS D LF + +F L++YVDDV++
Sbjct: 1108 CKLHKSLYGLKQASRQWFLKLSSALKAAGFKQSWSDYSLFXRNTQGRFTTLLVYVDDVIL 1167
Query: 769 TGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTGLL 590
G S + I K++L + F +KD+G +YFLG+E+ RS G L QRKY ++LL+D G L
Sbjct: 1168 AGNSLEDIIETKQFLASHFKLKDMGQLRYFLGIEVARSKQGIVLCQRKYALELLEDAGFL 1227
Query: 589 GCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVHAP 410
G KP P Q ++ G D +++RRL+GRL+YL ++RPD+ Y + LSQF+ P
Sbjct: 1228 GAKPSRFPVEQSLTLTRGDGAELKDASQYRRLVGRLIYLTITRPDLVYAVHILSQFMDTP 1287
Query: 409 LQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFFGG 230
Q H DAA +L+Y+K TP G+F P AYCDADW C TRRS TGYCIFFG
Sbjct: 1288 RQPHLDAAYKVLRYVKQTPGQGIFLPSTGQLELTAYCDADWARCKDTRRSTTGYCIFFGN 1347
Query: 229 SLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKAAL 50
+ SAEAEYRSMA T CE+ WL ++ DL+++ + V L+CDN+AA+
Sbjct: 1348 APISWKTKKQGTVSRSSAEAEYRSMATTCCEITWLRSLLADLNVNHAHAVKLFCDNQAAI 1407
Query: 49 HITANPVFHERTKHLD 2
HI +NPVFHERTKH++
Sbjct: 1408 HIASNPVFHERTKHIE 1423
Score = 217 bits (553), Expect(3) = e-156
Identities = 139/345 (40%), Positives = 181/345 (52%), Gaps = 38/345 (11%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW +LTA +++N P+ LL K+P+E L + P Y VFGC C+ ST K
Sbjct: 708 KPFWGDAILTAAYLINRTPTPLLQGKTPFEKLFHKSPNYSHLRVFGCRCFVSTHPLRPSK 767
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFH---AIASPSVELPL 1690
F+PR+ VF+GY G KGY++Y L K ISRDV F+E +FP+ + SPS++
Sbjct: 768 FDPRSIESVFIGYPHGQKGYKVYSLKDKKXLISRDVTFFETEFPYQNXLSTTSPSLDTFF 827
Query: 1689 PMSFPDYPEDDDTHIAID---SGKQHPVTSSAPKIPEH-LGRGHRVK--TQPRWLSDYVT 1528
P S P P+ DD HI+ + S Q TSS P+ L H P T
Sbjct: 828 P-SLPQTPDIDDDHISFNHSGSNLQPSATSSVDXHPQPTLDNSHSSSHVDPPSSPPSLNT 886
Query: 1527 NSVQVGLPEISKGSLAQIQNPTPYALKCF-----------PHQSSSF------------- 1420
+ + P S+ + TP L+ F P S+S
Sbjct: 887 SPPVISQPSPSQPRRSSRPTKTPTTLQDFHIEAALPSRPVPPSSTSEVAHSGTIHSLSQV 946
Query: 1419 -----LSPSYAAFLTQITGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPA 1255
LSP + AF +IT A EP ++SQA D W EAMN E+QAL+ N+TW L PLP+
Sbjct: 947 LSYDRLSPMHKAFTVKIT-LAKEPRSFSQAVLDSRWREAMNTEIQALQANKTWSLVPLPS 1005
Query: 1254 GKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
KK IG KWVYKIK +PDG+IERYKARLVAKG+ VEGID+ F
Sbjct: 1006 HKKPIGCKWVYKIKYNPDGTIERYKARLVAKGFSQVEGIDYRETF 1050
Score = 25.8 bits (55), Expect(3) = e-156
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 2083 LEIARALLFQSKVPK 2039
L +ARALLFQS +PK
Sbjct: 694 LNVARALLFQSHLPK 708
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 357 bits (916), Expect(2) = e-156
Identities = 176/382 (46%), Positives = 241/382 (63%), Gaps = 4/382 (1%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ +++SPVAK +VR+L+AL + W L +D+NNAFLHG L EEVYM P G
Sbjct: 571 YLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSS 630
Query: 955 ----EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIY 788
+VC L +S+YGLKQASRQW + S LI G+ S D+ LF+K + F L++Y
Sbjct: 631 NTAPKVCKLHKSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVY 690
Query: 787 VDDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLL 608
VDD+++ G + I +K LH F IKDLG +YFLGLE+ RS G L+QRKY +++L
Sbjct: 691 VDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEIL 750
Query: 607 KDTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLS 428
+D G L KP STPF + + G + D +RRLIGRLLYL +RPDISY +QQLS
Sbjct: 751 EDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLS 810
Query: 427 QFVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGY 248
QFV PL H+ AA +L+YLKG+ GLFY A+ D+DW +C ++R+S+TG+
Sbjct: 811 QFVSKPLDIHYQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGF 870
Query: 247 CIFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWC 68
C+F G SL S+EAEYR++A+ CELQWL + DL S + P ++C
Sbjct: 871 CVFLGSSLISWRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFC 930
Query: 67 DNKAALHITANPVFHERTKHLD 2
DNK+A+++ NP FHERTKH++
Sbjct: 931 DNKSAIYLAHNPTFHERTKHIE 952
Score = 224 bits (570), Expect(2) = e-156
Identities = 134/320 (41%), Positives = 177/320 (55%), Gaps = 13/320 (4%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW + + AVH++N +PS LL K+PY+ L++ P FGCL YASTL HR K
Sbjct: 267 KNFWNFAIQHAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTK 326
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPLPMS 1681
F+PRA V LGY GVKGY LYDL S F+SR+V F+E FPFH + S+ P P
Sbjct: 327 FQPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTP 386
Query: 1680 FP-----DYPEDDDTHI--------AIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLS 1540
P D D H+ +I + H S AP H R++ P +L
Sbjct: 387 ITIQTPISSPYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPSRH---STRMRQPPSYLK 443
Query: 1539 DYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPS 1360
DY + + P S + I TP+++ + F SPSY F ++ + EP
Sbjct: 444 DYHCSLL---APTGRINSFSGIS--TPHSIS--STLTYDFCSPSYKQFCLSVS-TNFEPH 495
Query: 1359 TYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYK 1180
TY+QA++ W+ AM EL AL+ N+TW + LP+GK+ IG KWVYKIK DGSIERYK
Sbjct: 496 TYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYK 555
Query: 1179 ARLVAKGYLLVEGIDFLRVF 1120
ARLVAKGY EG+D+L +
Sbjct: 556 ARLVAKGYSQTEGLDYLDTY 575
>gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1346
Score = 375 bits (963), Expect(3) = e-155
Identities = 182/378 (48%), Positives = 250/378 (66%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+FE+FSPVAK +VR L+A+A + W LH +D+NNAFLHG L E+VYM P+G AKP
Sbjct: 935 YFETFSPVAKITTVRTLLAVAAIKNWHLHQLDVNNAFLHGDLQEDVYMKIPDGVTCAKPN 994
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L++SLYGLKQASR+W + + L+ G++QS D LF GN F L++YVDD+
Sbjct: 995 SVCKLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDI 1054
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++ G S D +K L F IK+LG KYFLGLE+ S G +SQRKY +DLLKD+G
Sbjct: 1055 ILAGDSIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSG 1114
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
LLGCKP STP + + G + D++ +RR++G+LLYLN +RPDI++ QQLSQF+
Sbjct: 1115 LLGCKPASTPLDTSIKLHSAAGTPYADISGYRRIVGKLLYLNTTRPDIAFATQQLSQFMQ 1174
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
AP H++AA +L+YLK P G+F+ + Y DADW C+ +R+S++GYC F
Sbjct: 1175 APTNVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDADWAGCMDSRKSISGYCFFI 1234
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G SL S+EAEYR++++ CELQWLL + DL + + L+CDN++
Sbjct: 1235 GKSLVSWRAKKQATVSRSSSEAEYRALSSAACELQWLLYLFADLRVQLTRTPTLYCDNQS 1294
Query: 55 ALHITANPVFHERTKHLD 2
A+HI +NPVFHERTKHL+
Sbjct: 1295 AVHIASNPVFHERTKHLE 1312
Score = 203 bits (517), Expect(3) = e-155
Identities = 133/337 (39%), Positives = 178/337 (52%), Gaps = 30/337 (8%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AV+IMN +P+ L KSPY LL P +D VFG L +ASTL HR K
Sbjct: 613 KSFWCYAVSHAVYIMNRVPAPNLQNKSPYTLLYNTAPDFDTLKVFGSLVFASTLQSHRTK 672
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPLPMS 1681
+ RA CVFLGY +GVKG L DL + +F+SRDV +EH FP+ + +SP
Sbjct: 673 LDLRARKCVFLGYKSGVKGVVLLDLLNNSIFLSRDVTHHEHIFPYQS-SSPKTPWEYHSI 731
Query: 1680 FPDYPEDD---DTHIAID-SGKQHP-------------------VTSSAPKIPEH----- 1585
P + D D+ I++D + +Q P ++S P +H
Sbjct: 732 SPTPNDSDITLDSDISLDINAEQSPSPPHSSLSPNISNDTVISDTSTSTPPPKDHNDSPL 791
Query: 1584 -LGRGHRVKTQPRWLSDYVT-NSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSP 1411
+ R + P LSDYV N+ ++ G+ ++ Y L F S + LSP
Sbjct: 792 LHSKPIRQRRAPLHLSDYVCHNTSPTSHESLTSGTKSK------YPLSSF--HSLTLLSP 843
Query: 1410 SYAAFLTQITGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSK 1231
S+ AF IT EP +Y +A++ + WV AM +EL AL N TW++ LP K IG K
Sbjct: 844 SHKAFSMSIT-HCTEPQSYEEASKHEHWVTAMKEELNALAKNCTWKIVELPPHTKPIGCK 902
Query: 1230 WVYKIKRHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
WVYK+K +G IERYKARLVAKGY VEGID+ F
Sbjct: 903 WVYKVKHKANGQIERYKARLVAKGYNQVEGIDYFETF 939
Score = 22.3 bits (46), Expect(3) = e-155
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 2083 LEIARALLFQSKVPK 2039
L I RALL QS +PK
Sbjct: 599 LNIGRALLVQSNLPK 613
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 368 bits (945), Expect(3) = e-155
Identities = 177/378 (46%), Positives = 248/378 (65%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ ++FSPV + ++R+ +A+A W +H +DIN AFLHG L EEVYM PP G + P
Sbjct: 983 YIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPN 1042
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L++SLYGLKQASRQWNI+ +E L FGFVQS D LF KR F+ +++YVDD+
Sbjct: 1043 KVCKLQKSLYGLKQASRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDL 1102
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
+I+G+ E I +K+ L F+IKDLG YFLGLE RS G + QRKY ++LL+DTG
Sbjct: 1103 IISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTG 1162
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
LL KP STP + + D + +RRL+GRL+YL +RPD+++ + +LSQF+H
Sbjct: 1163 LLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMH 1222
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P AH+ AA +L+Y+K TP+ GLF+P + Y D+DW TC +RRS++G+C F
Sbjct: 1223 QPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFL 1282
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G +L S+EAEYR++A VCE QWL + D + +P+ L+CDN++
Sbjct: 1283 GNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQS 1342
Query: 55 ALHITANPVFHERTKHLD 2
AL+I ANPVFHERTKH++
Sbjct: 1343 ALYIAANPVFHERTKHVE 1360
Score = 209 bits (533), Expect(3) = e-155
Identities = 123/328 (37%), Positives = 174/328 (53%), Gaps = 21/328 (6%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AVH++N LP+ L SPY +L E P + VFGCL +ASTL +R K
Sbjct: 672 KMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTK 731
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFP------FHAIASPSVE 1699
EPR+ C+FLGY +G KG+ +YDL ++ FISRDV FYE+ FP + P V
Sbjct: 732 LEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVP 791
Query: 1698 L-PLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAP--------------KIPEHLGRGHRV 1564
+ +P++ D P TH +D + +S+ P IPE RV
Sbjct: 792 IAQMPLTSCD-PIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQRV 850
Query: 1563 KTQPRWLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQI 1384
K +P +L DY + + S + I + PY S S + S+ + ++ I
Sbjct: 851 KNRPGYLQDYHCTLAASKVDQSSSTARYPISDYLPYT-------SYSAVQQSFVSTISSI 903
Query: 1383 TGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHP 1204
EP +Y A W EA+ EL AL+ +TW LT LP K+A+G +WV+K+K H
Sbjct: 904 ----IEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYHA 959
Query: 1203 DGSIERYKARLVAKGYLLVEGIDFLRVF 1120
DGS+ERYKARLVAKG+ + G+D++ F
Sbjct: 960 DGSVERYKARLVAKGFTQIPGLDYIDTF 987
Score = 22.7 bits (47), Expect(3) = e-155
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 2083 LEIARALLFQSKVPK 2039
L +ARAL+FQS V K
Sbjct: 658 LSMARALMFQSNVSK 672
>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1353
Score = 367 bits (941), Expect(3) = e-154
Identities = 176/378 (46%), Positives = 247/378 (65%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ ++FSPV + ++R+ +A+A W +H +DIN AFLHG L EEVYM PP G + P
Sbjct: 913 YIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPN 972
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L++SLYGLKQ SRQWNI+ +E L FGFVQS D LF KR F+ +++YVDD+
Sbjct: 973 KVCKLQKSLYGLKQVSRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDL 1032
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
+I+G+ E I +K+ L F+IKDLG YFLGLE RS G + QRKY ++LL+DTG
Sbjct: 1033 IISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTG 1092
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
LL KP STP + + D + +RRL+GRL+YL +RPD+++ + +LSQF+H
Sbjct: 1093 LLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMH 1152
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P AH+ AA +L+Y+K TP+ GLF+P + Y D+DW TC +RRS++G+C F
Sbjct: 1153 QPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFL 1212
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G +L S+EAEYR++A VCE QWL + D + +P+ L+CDN++
Sbjct: 1213 GNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQS 1272
Query: 55 ALHITANPVFHERTKHLD 2
AL+I ANPVFHERTKH++
Sbjct: 1273 ALYIAANPVFHERTKHVE 1290
Score = 209 bits (533), Expect(3) = e-154
Identities = 123/328 (37%), Positives = 174/328 (53%), Gaps = 21/328 (6%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AVH++N LP+ L SPY +L E P + VFGCL +ASTL +R K
Sbjct: 602 KMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTK 661
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFP------FHAIASPSVE 1699
EPR+ C+FLGY +G KG+ +YDL ++ FISRDV FYE+ FP + P V
Sbjct: 662 LEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVP 721
Query: 1698 L-PLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAP--------------KIPEHLGRGHRV 1564
+ +P++ D P TH +D + +S+ P IPE RV
Sbjct: 722 IAQMPLTSCD-PIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQRV 780
Query: 1563 KTQPRWLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQI 1384
K +P +L DY + + S + I + PY S S + S+ + ++ I
Sbjct: 781 KNRPGYLQDYHCTLAASKVDQSSSTARYPISDYLPYT-------SYSAVQQSFVSTISSI 833
Query: 1383 TGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHP 1204
EP +Y A W EA+ EL AL+ +TW LT LP K+A+G +WV+K+K H
Sbjct: 834 ----IEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYHA 889
Query: 1203 DGSIERYKARLVAKGYLLVEGIDFLRVF 1120
DGS+ERYKARLVAKG+ + G+D++ F
Sbjct: 890 DGSVERYKARLVAKGFTQIPGLDYIDTF 917
Score = 22.7 bits (47), Expect(3) = e-154
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 2083 LEIARALLFQSKVPK 2039
L +ARAL+FQS V K
Sbjct: 588 LSMARALMFQSNVSK 602
>gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1394
Score = 378 bits (970), Expect(2) = e-153
Identities = 182/378 (48%), Positives = 245/378 (64%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
FFE+FSPV K +VR L+++A W LH +D++NAFLHG LD EVYM PP G +P
Sbjct: 962 FFETFSPVVKLTTVRFLLSVAVSHNWFLHQLDVDNAFLHGDLDVEVYMKPPPGLILPEPH 1021
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L +SLYGL+QASRQ N + + LI +GF QS D+ LF++ F L++YVDD+
Sbjct: 1022 LVCKLHKSLYGLRQASRQGNSKLTSALISYGFSQSPADHSLFIRHSSTSFTALLVYVDDI 1081
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++TG S I ++KK+LH+ F IKDLG K FLG ++ RS G L+QRKY +D+L + G
Sbjct: 1082 VLTGDSIQDIVAVKKFLHHEFRIKDLGNLKLFLGFDVARSQQGLILNQRKYCLDILAEFG 1141
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
GCKP ++P + +G D +RRLIG+L YL +RPDIS+ +QQ+SQF+
Sbjct: 1142 FTGCKPANSPSNPTVKLKDDEGDLVQDPTAYRRLIGKLQYLTNTRPDISFAVQQVSQFMS 1201
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P +H +AA +LKYLKG P LGLFYP N H A+ D+DW TC +TR+S TGYC+F+
Sbjct: 1202 KPRYSHLNAAFRILKYLKGCPGLGLFYPSANPHRIQAFSDSDWATCCITRKSTTGYCVFY 1261
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G L S EAEYR++A+ CELQWL VA DL + LP +CDN++
Sbjct: 1262 GNCLISWKSKKQSTVSRSSTEAEYRALASVACELQWLKYVADDLCLQIPLPFPTFCDNQS 1321
Query: 55 ALHITANPVFHERTKHLD 2
A+ + NP FHERTKH++
Sbjct: 1322 AIQLAKNPSFHERTKHIE 1339
Score = 196 bits (498), Expect(2) = e-153
Identities = 125/331 (37%), Positives = 174/331 (52%), Gaps = 26/331 (7%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
FW Y + AVH++N LP+ L KSPYE + ++P VFGCL +A+T+ K +
Sbjct: 650 FWSYAIKHAVHLINRLPTPFLENKSPYESVFGKIPDLSTLRVFGCLAFANTITSGITKLD 709
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVE-------- 1699
RAS C+FLG+ GVKGY L++LT+K +SR+VIFYE FP+ A SPSV
Sbjct: 710 KRASKCIFLGFKPGVKGYLLFNLTTKSFLLSRNVIFYESHFPY-ASNSPSVSNNHTTGTT 768
Query: 1698 -----------LPLPMSFPDYPEDDDTHIAIDSGKQHPV---TSSAPKIPEHLGRGHRVK 1561
+ + P+ D ID PV + + + + R+
Sbjct: 769 ASQQSFDSLIAFDIISAIPNNVTSDIVSSNIDHNAVEPVLQFNDDSNDAVQIVDQPTRIS 828
Query: 1560 TQPR----WLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFL 1393
T+PR +LSDY P +S A TPY L + S S S S+ AF
Sbjct: 829 TRPRKPPAYLSDY-------DCPTLSS---ANTSCCTPYPLHSY--LSYSNCSDSHTAFC 876
Query: 1392 TQITGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIK 1213
++ + EP+++ +A + W +AM E+QALE N+TW L LP K+ +G KWVYK K
Sbjct: 877 MSLS-ATIEPTSFKEACKHDHWQQAMLAEIQALERNKTWSLVRLPPKKRVVGCKWVYKTK 935
Query: 1212 RHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
+ DGSIER+KARLVAKG+ EG+DF F
Sbjct: 936 LNADGSIERHKARLVAKGFTQTEGMDFFETF 966
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 358 bits (918), Expect(2) = e-153
Identities = 183/378 (48%), Positives = 240/378 (63%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ +FSPVAK +VR+L+ALA W L +D+NNAFLHG L+EEVYM P G
Sbjct: 938 YLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSN 997
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L++SLYGLKQASRQW + S LI G+ QSA D+ LF+K + L+IYVDD+
Sbjct: 998 QVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDI 1057
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++ G + I + L F IKDLG KYFLGLE+ R+ G HLSQRKY++D+L D G
Sbjct: 1058 VLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCG 1117
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
++ +PVSTP +SA G D + +RRL+GRL+YL +RPDISY + LSQF+
Sbjct: 1118 MMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMS 1177
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
AP AH A +L+YLK P GLF+P + A+ D+DW CL TRRS+TG+ ++
Sbjct: 1178 APSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYL 1237
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G SL S+EAEYR++A T ELQWL + DLH+ P L+CDN++
Sbjct: 1238 GDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQS 1297
Query: 55 ALHITANPVFHERTKHLD 2
ALHI AN VFHERTKH+D
Sbjct: 1298 ALHIAANQVFHERTKHID 1315
Score = 216 bits (550), Expect(2) = e-153
Identities = 127/328 (38%), Positives = 180/328 (54%), Gaps = 23/328 (7%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
FW Y LL A +++N + + LL K+P++ L + VFGCLCY ST +R+K +
Sbjct: 627 FWSYALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLD 686
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPL--PMS 1681
PRA CVFLG+ KGY YDL ++ + ISR+V FYE+ FP S + +P+ P+S
Sbjct: 687 PRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPIS 746
Query: 1680 FPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEH---------------------LGRGHRV 1564
F + D + QH VTS P H L R R+
Sbjct: 747 FGIHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRL 806
Query: 1563 KTQPRWLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQI 1384
+ P +L DY +S+ + G L I+ Y S LS + AF++ I
Sbjct: 807 RNPPSYLQDY-HHSLTSTSTNLHPGMLYPIEKYISY----------SRLSNDFQAFVSSI 855
Query: 1383 TGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHP 1204
+ + EP +Y++AA+ W++AM+ EL+AL+ N+TW LTPLP K+A+G +W+YKIK +
Sbjct: 856 S-AVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNA 914
Query: 1203 DGSIERYKARLVAKGYLLVEGIDFLRVF 1120
DGSIERYKARLVAKGY VEG+D+L F
Sbjct: 915 DGSIERYKARLVAKGYTQVEGLDYLATF 942
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 352 bits (903), Expect(3) = e-151
Identities = 178/378 (47%), Positives = 243/378 (64%), Gaps = 1/378 (0%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
FF+++SPVAK +VR+L+A+A + W LH +D+NNAFLHG L+EEVYM P G+
Sbjct: 693 FFDTYSPVAKMTTVRVLLAIAAAKQWYLHQLDVNNAFLHGDLNEEVYMQLPLGFSTPNDP 752
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L++SLYGL+QASRQW + S L+ FGF Q+ D+ LF+K+ F+ L+IYVDDV
Sbjct: 753 RVCKLKKSLYGLRQASRQWYSKLSSSLLKFGFSQAKTDSSLFIKQTSTSFIALLIYVDDV 812
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
+I I +KK+LH FTIKDLG KYF+G+E+ RSA G LSQRKY +D+LKD+G
Sbjct: 813 IIASNDLKEIDVVKKFLHESFTIKDLGELKYFVGIEVARSAKGIVLSQRKYALDVLKDSG 872
Query: 595 LLGCKPVSTPFPQGFNISA-QQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFV 419
G KP+ P ++A P D A ++RLIG+LLYL ++R D++Y +Q L+QF+
Sbjct: 873 FFGSKPIGFPMESSLKLTANDSSPLLSDPASYKRLIGKLLYLTITRLDLAYXVQALNQFM 932
Query: 418 HAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIF 239
P H AA +L+Y+K T GLF + AY D+DWG C+ TRRS+TG+ +F
Sbjct: 933 SNPHSTHLQAAERVLRYIKATLGQGLFLKASSDLHLKAYSDSDWGGCINTRRSVTGFTVF 992
Query: 238 FGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNK 59
G SL SA+AEYR++A T CELQWL+ + DL++ P L+ D+K
Sbjct: 993 IGDSLISWKSKKQPTISRSSAKAEYRALATTTCELQWLVYLLVDLNVKHPQPALLYTDSK 1052
Query: 58 AALHITANPVFHERTKHL 5
A I +NPV HERTKH+
Sbjct: 1053 PASKIASNPVHHERTKHI 1070
Score = 212 bits (539), Expect(3) = e-151
Identities = 122/324 (37%), Positives = 178/324 (54%), Gaps = 20/324 (6%)
Frame = -3
Query: 2031 WPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFEP 1852
W +LTA H++N PS +L ++PY+LL ++ P Y+ F VF CLC+AST+ +R KF P
Sbjct: 383 WTNYVLTATHLINHTPSYILNNQTPYQLLFQKPPNYNYFEVFDCLCFASTITNNRGKFHP 442
Query: 1851 RASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPLPMSFPD 1672
RA+ C+FLGY +KGY++ DLT+ F+S +V+ +E FP S + P FPD
Sbjct: 443 RATKCIFLGYPPNIKGYKVLDLTTLKTFVSXNVLLHESTFP-----SIPNTIHXPFVFPD 497
Query: 1671 YPE-------DDDTHIAIDSGKQH---PVTSSAPKIPEH----------LGRGHRVKTQP 1552
+P+ + ++I SG + P + IPE+ L R R K P
Sbjct: 498 FPQIYESKSYKPNNSVSITSGSTNSTDPTSVIESSIPENTIHANNDANSLRRSERTKHLP 557
Query: 1551 RWLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSA 1372
++L +Y ++ + ++ + + PY + F S S LS + AF+ + S
Sbjct: 558 KYLQNYYCGNM-TKIDSATQAPSSCSSSGKPYCI--FSFLSDSRLSSKHKAFI-YVISST 613
Query: 1371 CEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSI 1192
EP TY Q W AM E++AL+ N+TW+L LP K AIG KWVY++K DGS+
Sbjct: 614 FEPKTYKQXVSIPHWQTAMTDEIKALKHNKTWDLAILPPNKTAIGCKWVYRVKFKADGSV 673
Query: 1191 ERYKARLVAKGYLLVEGIDFLRVF 1120
ERYKARLVAKGY EG+DF +
Sbjct: 674 ERYKARLVAKGYTQQEGLDFFDTY 697
Score = 24.3 bits (51), Expect(3) = e-151
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 2083 LEIARALLFQSKVP 2042
L +AR+L+FQSK+P
Sbjct: 366 LNVARSLMFQSKLP 379
>ref|XP_013664987.1| PREDICTED: uncharacterized protein LOC106369368 [Brassica napus]
Length = 1808
Score = 369 bits (946), Expect(3) = e-151
Identities = 177/383 (46%), Positives = 250/383 (65%), Gaps = 5/383 (1%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAK-- 962
+ ++FSPVAK SV++L+ALA + W L+ +D++NAFLHG LDEE+YM P+GY
Sbjct: 1365 YIDTFSPVAKLTSVKLLLALAAIKGWSLNQMDVSNAFLHGELDEEIYMRLPQGYTPPTGV 1424
Query: 961 ---PGEVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLII 791
P VC LR+S+YGLKQASRQW FS L+G ++QS DN LF+KR G+ F+ +++
Sbjct: 1425 ILPPNPVCRLRKSIYGLKQASRQWYKRFSSVLLGDNYIQSPADNTLFIKRSGDSFVAVLV 1484
Query: 790 YVDDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDL 611
YVDD++I + + L+ L + F IKDLG A++FLGLE+ RS+ G + QRKY ++L
Sbjct: 1485 YVDDIMIASNNTAAVADLQALLRSEFKIKDLGQARFFLGLEIARSSTGISVCQRKYTLNL 1544
Query: 610 LKDTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQL 431
L+D+GLLGCKP S P +++ G + +R LIGRLLYL ++RPDI++ + QL
Sbjct: 1545 LEDSGLLGCKPSSIPMDPTLHLTKDMGVPLENPTAYRELIGRLLYLTITRPDITFAVHQL 1604
Query: 430 SQFVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTG 251
SQF+ +P H+ AA +L+YLK P G + +A+ DADW TC TRRS+TG
Sbjct: 1605 SQFLSSPTDVHFQAAHKILRYLKNNPGQGFMFSANAELCLNAFADADWATCKETRRSITG 1664
Query: 250 YCIFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLW 71
+C++ G SL S EAEYRS+A CEL W+ + +DL ++ + P L+
Sbjct: 1665 FCVYLGSSLLSWKSKKQAVVSRSSTEAEYRSLALATCELIWIQQLLRDLLVTVTGPAKLY 1724
Query: 70 CDNKAALHITANPVFHERTKHLD 2
CDNK+A+HI NPVFHERTKH++
Sbjct: 1725 CDNKSAIHIANNPVFHERTKHIE 1747
Score = 191 bits (486), Expect(3) = e-151
Identities = 122/334 (36%), Positives = 170/334 (50%), Gaps = 29/334 (8%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
+W + TAV ++N +PS LL KSP+E L + P Y FGCLC+AST R KF
Sbjct: 1043 YWSDCIRTAVFLINKMPSPLLDNKSPFEKLLGKAPDYHLLRSFGCLCFASTNTKDRTKFS 1102
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHA--IASPSVE------ 1699
PRA CVFLGY +GVKGY++ DL S + +SR+VIF E FPF + S SV+
Sbjct: 1103 PRAIPCVFLGYPSGVKGYKVLDLESHSIIVSRNVIFKEKVFPFKTSELLSKSVDMFPNTI 1162
Query: 1698 --LPLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDYVTN 1525
LP+P+ F + T I+ + PV+ + R H T S + T
Sbjct: 1163 LPLPVPLHFV-----ESTPISSNGESSQPVSDDLSRSVSSETRTHTHDTVSNTDSTHTTT 1217
Query: 1524 SVQVGLPEISKGS--------LAQ-----IQNPTPYALKCFPHQSSSFLSPSYAAFLTQI 1384
+ L ++S+ L+Q + + + P+ SS + SY F
Sbjct: 1218 DTGIHLSDVSRPKRMTRAPTYLSQYHCSLVSTIPSSSCRKTPYPLSSVI--SYVRFNPVF 1275
Query: 1383 TGSA------CEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVY 1222
S EP T+ QA W +A N EL A+E N TW++ LP GK AIG KWV+
Sbjct: 1276 QSSVHAYSLETEPKTFKQAMSSDKWKKAANVELDAMEQNRTWDVVSLPDGKTAIGCKWVF 1335
Query: 1221 KIKRHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
IK + DG++ER+K RLVA+G+ EGID++ F
Sbjct: 1336 TIKYNADGTVERHKGRLVAQGFTQQEGIDYIDTF 1369
Score = 26.6 bits (57), Expect(3) = e-151
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 2083 LEIARALLFQSKVPKKILALYSSNC 2009
L +ARALLFQS VP +Y S+C
Sbjct: 1027 LNVARALLFQSNVP----MVYWSDC 1047
Score = 253 bits (646), Expect(3) = e-115
Identities = 127/269 (47%), Positives = 179/269 (66%), Gaps = 5/269 (1%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAK-- 962
+ ++FSPVAK SV++L+ALA + W L+ +D++NAFLHG LDEE+YM P+GY
Sbjct: 759 YIDTFSPVAKLTSVKLLLALAAIKGWSLNQMDVSNAFLHGELDEEIYMRLPQGYTPPTGV 818
Query: 961 ---PGEVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLII 791
P VC LR+S+YGLKQASRQW FS L+G ++QS DN LF+KR G+ F+ +++
Sbjct: 819 ILPPNPVCRLRKSIYGLKQASRQWYKRFSSVLLGDNYIQSPADNTLFIKRSGDSFVAVLV 878
Query: 790 YVDDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDL 611
YVDD++I + + L+ L + F IKDLG A++FLGLE+ RS+ G + QRKY ++L
Sbjct: 879 YVDDIMIASNNTAAVADLQALLRSEFKIKDLGQARFFLGLEIARSSTGISVCQRKYTLNL 938
Query: 610 LKDTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQL 431
L+D+GLLGCKP S P + P+ +R LIGRLLYL ++RPDI++ + QL
Sbjct: 939 LEDSGLLGCKPSSIPL---------ENPT-----AYRELIGRLLYLTITRPDITFAVHQL 984
Query: 430 SQFVHAPLQAHWDAAMHLLKYLKGTPSLG 344
SQF+ +P H+ AA +L+YLK P G
Sbjct: 985 SQFLSSPTDVHFQAAHKILRYLKNNPGQG 1013
Score = 188 bits (478), Expect(3) = e-115
Identities = 126/357 (35%), Positives = 170/357 (47%), Gaps = 52/357 (14%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
+W + TAV ++N +PS LL KSP+E L + P Y FGCLC+AST R KF
Sbjct: 407 YWSDCIRTAVFLINKMPSPLLDNKSPFEKLLGKAPDYHLLRSFGCLCFASTNTKDRTKFS 466
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHA--IASPSVE------ 1699
PRA CVFLGY +GVKGY++ DL S + +SR+VIF E FPF + S SV+
Sbjct: 467 PRAIPCVFLGYPSGVKGYKVLDLESHSIIVSRNVIFKEKVFPFKTSELLSKSVDMFPNTI 526
Query: 1698 --LPLPMSFPD-----------YPEDDD------------THIAIDSGKQHPVTSSAPKI 1594
LP+P+ F + P DD TH + + T+
Sbjct: 527 LPLPVPLHFVESTPISSNGESSQPVSDDLSRSVSSETRTHTHDTVSNTDSTHTTTDTGIH 586
Query: 1593 PEHLGRGHRVKTQPRWLSDYVTNSVQV------GLPEISKGSLAQIQNPTPYALKCFPHQ 1432
+ R R P +LS Y + V LP + P++ P
Sbjct: 587 LSDVSRPKRTTRAPTYLSQYHCSLVSTIPSSSCRLPRSTSSVNEHHCFLVPFSSISSPSF 646
Query: 1431 SSSFLSP-------SYAAFLTQITGSA------CEPSTYSQAAQDKGWVEAMNKELQALE 1291
SSF +P SY F S EP T+ QA W +A N EL A+E
Sbjct: 647 PSSFKTPYPLSSVISYVRFNPVFQSSVHAYSLETEPKTFKQAMSSDKWKKAANVELDAME 706
Query: 1290 DNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
N TW++ LP GK AIG +WV+ IK + DG++ER+K RLVA+G+ EGID++ F
Sbjct: 707 QNRTWDVVSLPDGKTAIGCRWVFTIKYNADGTVERHKGRLVAQGFTQQEGIDYIDTF 763
Score = 26.6 bits (57), Expect(3) = e-115
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 2083 LEIARALLFQSKVPKKILALYSSNC 2009
L +ARALLFQS VP +Y S+C
Sbjct: 391 LNVARALLFQSNVP----MVYWSDC 411
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 367 bits (941), Expect(2) = e-150
Identities = 191/378 (50%), Positives = 241/378 (63%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
FF++FSPVAK +VR+LI+LA L +D+NN+FLHG L+EEVYM P G + PG
Sbjct: 700 FFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNSFLHGDLNEEVYMQLPPGITPSFPG 759
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L+RSLYGLKQASRQW S LI G+V S D+ LF+K ++IYVDD+
Sbjct: 760 QVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPAITTAILIYVDDI 819
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++ G I L LHN F IKDLG KYFLGLE+ R+ G HL QRKY +DLL DTG
Sbjct: 820 VLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYTLDLLSDTG 879
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQFVH 416
+L KPVSTP ++SA G F D A +RRL+GRL+YL +RP I+Y +QQLSQFV
Sbjct: 880 MLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVGRLIYLPNTRPAIAYAVQQLSQFVS 939
Query: 415 APLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCIFF 236
P AH A +L YLKGTP G+F V + A+ D DW C TRRS+TG+ ++
Sbjct: 940 NPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLRAFSDYDWAGCPDTRRSITGFAVYL 999
Query: 235 GGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDNKA 56
G SL S+EAEYR++A T CELQWL + KD HI P L+CDN+
Sbjct: 1000 GDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDLIRPSILYCDNQF 1059
Query: 55 ALHITANPVFHERTKHLD 2
AL I +NP+FHERTKH++
Sbjct: 1060 ALQIASNPIFHERTKHIE 1077
Score = 195 bits (495), Expect(2) = e-150
Identities = 120/310 (38%), Positives = 169/310 (54%), Gaps = 5/310 (1%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
FW + L A ++N +P+ L SP+E L VFGCLCY+S + HR K +
Sbjct: 412 FWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCLCYSSIITSHRTKLD 471
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFP-FHAIASPSVE--LPLPM 1684
PRA C+FLG+ KGY L +L + + +S++VIF+E FP F SPS +P+P
Sbjct: 472 PRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTKPNSPSFSSPVPIPY 531
Query: 1683 SFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDYVTNSVQVGLP 1504
++ DYP + I S P S+P L R R + P +L D+ G P
Sbjct: 532 NYADYPSFPSSSIVESSEPPPPDQHSSPP---PLRRSTRPRRPPTYLQDFHGAFTSTG-P 587
Query: 1503 EISKGSLAQIQNPTPYALKCFPHQSSSF--LSPSYAAFLTQITGSACEPSTYSQAAQDKG 1330
S G I++P H S+ LSPS+ ++ I+ S +P + +A++
Sbjct: 588 HSSTG----IRHPL--------HSFISYDRLSPSFHHYVFSIS-SVTKPKNFVEASKSDS 634
Query: 1329 WVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLL 1150
W++AM++E+ ALE N TW LT LP K AIG +WVYK+K DGSI+RYKARLVAKGY
Sbjct: 635 WLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQ 694
Query: 1149 VEGIDFLRVF 1120
+EG+DF F
Sbjct: 695 MEGLDFFDTF 704
>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 327 bits (838), Expect(3) = e-149
Identities = 165/383 (43%), Positives = 235/383 (61%), Gaps = 5/383 (1%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAK-- 962
+ ++FSPVAK +V++LIA+A + W L +DI+NAFL+G LDEE+YM P GY +
Sbjct: 992 YVDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGD 1051
Query: 961 ---PGEVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLII 791
P VC L++SLYGLKQASRQW ++FSE L GF QS+ D+ LF ++ N ++ +++
Sbjct: 1052 SFPPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLV 1111
Query: 790 YVDDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDL 611
YVDD++I + + L+ L ++DLG +YFLGLE+ R+ G + QRKY ++L
Sbjct: 1112 YVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLEL 1171
Query: 610 LKDTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQL 431
L +TGLLGCK S P +S + G D +R+L+G+L+YL +RPDI+Y + +L
Sbjct: 1172 LAETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRL 1231
Query: 430 SQFVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTG 251
QF AP H A ++ YLKGT GLFY + D+D+ +C +R+ TG
Sbjct: 1232 CQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTG 1291
Query: 250 YCIFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLW 71
YC+F G SL SAEAEY++M+ V E+ WL + +DL I S L+
Sbjct: 1292 YCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLY 1351
Query: 70 CDNKAALHITANPVFHERTKHLD 2
CDN AA+HI NPVFHERTKH++
Sbjct: 1352 CDNTAAIHIANNPVFHERTKHIE 1374
Score = 227 bits (579), Expect(3) = e-149
Identities = 134/311 (43%), Positives = 170/311 (54%), Gaps = 6/311 (1%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
+W +LTAV I+N PS ++ K+ +E+L K++P Y FGCLCYAST R KFE
Sbjct: 715 YWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFE 774
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPLPMSFP 1675
RA C FLGY +G KGY+L DL S +FISR+V+FYE FPF P+ + FP
Sbjct: 775 DRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYEDLFPFK--TKPAENEESSVFFP 832
Query: 1674 DYPEDDDTHIAIDSGKQHP------VTSSAPKIPEHLGRGHRVKTQPRWLSDYVTNSVQV 1513
HI +D HP +SA +P + RV P +L DY NSV
Sbjct: 833 --------HIYVDRNDSHPSQPLPVQETSASNVPAE-KQNSRVSRPPAYLKDYHCNSV-- 881
Query: 1512 GLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYSQAAQDK 1333
+ +P L S S LS Y F+ + EP TY+QA Q K
Sbjct: 882 ---------TSSTDHPISEVL------SYSSLSDPYMIFINAV-NKIPEPHTYAQARQIK 925
Query: 1332 GWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYL 1153
W +AM E+ ALEDN TW + LP GKKA+G KWVYKIK + DGS+ERYKARLVAKGY
Sbjct: 926 EWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYT 985
Query: 1152 LVEGIDFLRVF 1120
EG+D++ F
Sbjct: 986 QTEGLDYVDTF 996
Score = 25.4 bits (54), Expect(3) = e-149
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 2083 LEIARALLFQSKVP 2042
L +ARALLFQS++P
Sbjct: 699 LNVARALLFQSQIP 712
>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
from transposon TNT 1-94 [Gossypium raimondii]
Length = 683
Score = 377 bits (967), Expect(2) = e-148
Identities = 179/380 (47%), Positives = 256/380 (67%), Gaps = 2/380 (0%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+F++FSPVAK +VR+L+ALAT + W + +D+NNAFLHG L+E+VYM+PP G F
Sbjct: 250 YFDTFSPVAKITTVRLLLALATSRHWHIQQLDVNNAFLHGDLNEDVYMLPPPG-FSHDST 308
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
+VC L +S+YGLKQASRQW + + LI G++QS D+ +F K+ F L+IYVDD+
Sbjct: 309 KVCKLHKSIYGLKQASRQWFSKLTTALISLGYIQSTADHSMFTKKHSEDFTVLLIYVDDI 368
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++TGTS I +K++L F IKDLG KYFLGLE+ R++ G H+SQRKY +++L+++G
Sbjct: 369 ILTGTSSPEIMKVKQFLDTTFRIKDLGDLKYFLGLEVARTSQGIHISQRKYALEILQESG 428
Query: 595 LLGCKPVSTPFPQG--FNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQF 422
+ CKP TP + +++ G D+ +R+L+G+LLYL +R D+++ +QQLSQF
Sbjct: 429 FIECKPAKTPMATKSVYKLTSTDGELLSDITSYRQLVGKLLYLTSTRLDLTFAVQQLSQF 488
Query: 421 VHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCI 242
+ P H AA +L+YLKG PS GLFYP + A+ D+DW C TRRS+TGYCI
Sbjct: 489 MDKPTTNHLQAAHRVLRYLKGCPSTGLFYPASSSFELKAFSDSDWAGCPETRRSITGYCI 548
Query: 241 FFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDN 62
FFG +L S+EAEYR++A+TVCE+QWL + DLH+ S ++CDN
Sbjct: 549 FFGEALISWRAKKQPTVSRSSSEAEYRALASTVCEVQWLHYLLCDLHVPISHATPVFCDN 608
Query: 61 KAALHITANPVFHERTKHLD 2
K+ + I +NP FHERTKH++
Sbjct: 609 KSTIQIASNPTFHERTKHIE 628
Score = 180 bits (457), Expect(2) = e-148
Identities = 113/271 (41%), Positives = 151/271 (55%), Gaps = 7/271 (2%)
Frame = -3
Query: 1911 VFGCLCYASTLGPHRRKFEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQF 1732
+FGCL +ASTL HR+KF+PRA CVFLGY VKGY L D+ ++ +F+SR+V F+E F
Sbjct: 4 IFGCLSFASTLSAHRKKFDPRAKQCVFLGYKPHVKGYILLDIETRAIFVSRNVTFHETIF 63
Query: 1731 PF--HAIASPSVELPLPMSFPDYPEDDDTHIAI---DSGKQHPVTSSAPKIPEHLGRGHR 1567
PF H++ +P+ + L S Y D+ I+ S Q TS P P R R
Sbjct: 64 PFLQHSLNNPTTPVGLLASDTIY----DSPISPPQPSSTDQSSSTSHPPTQPSTSSRPQR 119
Query: 1566 VKTQPRWLSDYVTNSVQVGLPEISKGSLAQIQNP-TPYAL-KCFPHQSSSFLSPSYAAFL 1393
+ P +L DY LP A +P TP+++ C + + LSP + F
Sbjct: 120 NRRPPSYLQDYQ----HYQLP-------AATNHPGTPHSIFNCISYHN---LSPQHLHFT 165
Query: 1392 TQITGSACEPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIK 1213
I+ S EP TY QA++ W EAM E+ ALE N TW +T LP GK G KWV+++K
Sbjct: 166 LAISASI-EPKTYKQASKFTHWNEAMQAEINALEQNNTWTMTTLPPGKTPXGCKWVFRVK 224
Query: 1212 RHPDGSIERYKARLVAKGYLLVEGIDFLRVF 1120
DGS ERYKARLVAKGY + G+D+ F
Sbjct: 225 HRADGSTERYKARLVAKGYTQI-GVDYFDTF 254
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 350 bits (899), Expect(2) = e-148
Identities = 177/381 (46%), Positives = 246/381 (64%), Gaps = 5/381 (1%)
Frame = -2
Query: 1129 ESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAK---- 962
E+FSPVAK SV++L+ +A + L +DI+NAFL+G LDEE+YM P+GY +
Sbjct: 880 ETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSL 939
Query: 961 -PGEVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYV 785
P VC L++SLYGLKQASRQW ++FS L+G GF+QS D+ F+K FL +++Y+
Sbjct: 940 PPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYI 999
Query: 784 DDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLK 605
DD++I ++ + LK + + F ++DLG KYFLGLE+ RS G H+SQRKY +DLL
Sbjct: 1000 DDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLD 1059
Query: 604 DTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQ 425
+TG LGCKP S P + G F++V +RRLIGRL+YLN++RPDI++ + +L+Q
Sbjct: 1060 ETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQ 1119
Query: 424 FVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYC 245
F AP +AH A +L+Y+KGT GLFY + Y +AD+ +C +RRS +GYC
Sbjct: 1120 FSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYC 1179
Query: 244 IFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCD 65
+F G SL SAEAEYRS++ EL WL N K+L + S P L+CD
Sbjct: 1180 MFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCD 1239
Query: 64 NKAALHITANPVFHERTKHLD 2
N+AA+HI N VFHERTKH++
Sbjct: 1240 NEAAIHIANNHVFHERTKHIE 1260
Score = 206 bits (524), Expect(2) = e-148
Identities = 117/315 (37%), Positives = 170/315 (53%), Gaps = 10/315 (3%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
+W +LTAV+++N LP+ +L K P+E+L K +P YD VFGCLCYAST R KF
Sbjct: 588 YWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFS 647
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVEL------- 1696
PRA AC F+GY +G KGY+L DL + + +SR V+F+E FPF E
Sbjct: 648 PRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLN 707
Query: 1695 ---PLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDYVTN 1525
P+ D+ D+ +++ T++ P+ + HR +P +L DY +
Sbjct: 708 PTPPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPE--PSVQTSHRKAKKPAYLQDYYCH 765
Query: 1524 SVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYSQA 1345
SV + TP+ ++ F S ++ Y FL + + EPS Y++A
Sbjct: 766 SV---------------VSSTPHEIRKF--LSYDRINDPYLTFLACLDKTK-EPSNYTEA 807
Query: 1344 AQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVA 1165
+ + W +AM E LE TWE+ LPA K+ IG +W++KIK + DGS+ERYKARLVA
Sbjct: 808 EKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVA 867
Query: 1164 KGYLLVEGIDFLRVF 1120
+GY EGID+ F
Sbjct: 868 QGYTQKEGIDYNETF 882
>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1097
Score = 346 bits (887), Expect(2) = e-148
Identities = 174/380 (45%), Positives = 236/380 (62%), Gaps = 3/380 (0%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ ++FSPV K +VR L+A+AT + W +H +D+N FLHG L EEVYM PP G P
Sbjct: 719 YLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPG-LTVSPH 777
Query: 955 E---VCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYV 785
+ VC L +SLYGLKQASRQWN + + LI GF QS D LF K+ G +F +++YV
Sbjct: 778 QSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYV 837
Query: 784 DDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLK 605
DD+++ G I +K L FTIKDLG KYFLG+E+ RS+ G L QRKY +DL++
Sbjct: 838 DDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIE 897
Query: 604 DTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQ 425
DTGLL KP +P + G D ++RRL+GRL+YL +R DIS+ + LSQ
Sbjct: 898 DTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQ 957
Query: 424 FVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYC 245
F+ P H+ AA+ +LKY+K P GLF+P + T Y D+DW +C TRRS+TG+
Sbjct: 958 FMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFS 1017
Query: 244 IFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCD 65
F G +L SAEAEYR++A + CE QW+ + D + P+ L+CD
Sbjct: 1018 FFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWISYLLHDFGLHNFHPIVLFCD 1077
Query: 64 NKAALHITANPVFHERTKHL 5
N++ALHI +NPVFHERTKH+
Sbjct: 1078 NQSALHIASNPVFHERTKHI 1097
Score = 210 bits (535), Expect(2) = e-148
Identities = 132/317 (41%), Positives = 174/317 (54%), Gaps = 10/317 (3%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AV ++N PS+ L K PYE++ +P VFGCL YA+TL +R+K
Sbjct: 426 KSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKK 485
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPF---------HAIASP 1708
F+PR CVFLG+ VKG LYDL S+ F+SR V ++EH FPF I+ P
Sbjct: 486 FDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLP 545
Query: 1707 SVELPLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDY-V 1531
+ PLP+ P +T + PV+ P P + + R + P +L DY
Sbjct: 546 RHQPPLPIDTDPTPLSTNT-----TPTSSPVSVVPP--PPFVQKSTRPRKLPSYLHDYHH 598
Query: 1530 TNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYS 1351
T P IS+ L I N H S S LSPS AF I+ S EP++Y
Sbjct: 599 TLLTTHNSPTISQ-PLYSIHN----------HISYSNLSPSQKAFSLSIS-SIKEPNSYV 646
Query: 1350 QAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARL 1171
+A QD+ W A+ EL ALE N TW LTPLP K+ +G KWV+K+K + DG+IER+KARL
Sbjct: 647 EAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARL 706
Query: 1170 VAKGYLLVEGIDFLRVF 1120
VAKGY EG+D+L F
Sbjct: 707 VAKGYTQTEGLDYLDTF 723
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 346 bits (887), Expect(2) = e-147
Identities = 174/381 (45%), Positives = 238/381 (62%), Gaps = 3/381 (0%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ ++FSPV K +VR L+A+AT + W +H +D+N FLHG L EEVYM PP G P
Sbjct: 563 YLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPG-LTVSPH 621
Query: 955 E---VCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYV 785
+ VC L +SLYGLKQASRQWN + + LI GF QS D LF K+ G +F +++YV
Sbjct: 622 QSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYV 681
Query: 784 DDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLK 605
DD+++ G I +K L FTIKDLG KYFLG+E+ RS+ G L QRKY +DL++
Sbjct: 682 DDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIE 741
Query: 604 DTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAKFRRLIGRLLYLNMSRPDISYGIQQLSQ 425
DTGLL KP +P + G D ++RRL+GRL+YL +R DIS+ + LSQ
Sbjct: 742 DTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQ 801
Query: 424 FVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYC 245
F+ P H+ AA+ +LKY+K P GLF+P + T Y D+DW +C TRRS+TG+
Sbjct: 802 FMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFS 861
Query: 244 IFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCD 65
F G +L SAEAEYR++A + CE QWL + D + + P+ L+CD
Sbjct: 862 FFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCD 921
Query: 64 NKAALHITANPVFHERTKHLD 2
N++ALHI +NPVFHERTK+++
Sbjct: 922 NQSALHIASNPVFHERTKNIE 942
Score = 207 bits (527), Expect(2) = e-147
Identities = 131/317 (41%), Positives = 173/317 (54%), Gaps = 10/317 (3%)
Frame = -3
Query: 2040 KKFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRK 1861
K FW Y + AV ++N PS+ L K PYE++ +P VFGCL YA+TL +R+K
Sbjct: 270 KSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKK 329
Query: 1860 FEPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPF---------HAIASP 1708
F+PR CVFLG+ VKG LYDL S+ F+SR V ++EH FPF I+ P
Sbjct: 330 FDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLP 389
Query: 1707 SVELPLPMSFPDYPEDDDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPRWLSDY-V 1531
+ PLP+ P +T + PV+ P P + + R + P +L DY
Sbjct: 390 RHQPPLPIDTDPTPLSTNT-----TPTSSPVSVVPP--PPFVRKSTRPRKLPSYLHDYHH 442
Query: 1530 TNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYS 1351
T P IS+ L I N H S S LSPS AF I+ S EP++Y
Sbjct: 443 TLLTTHNSPTISQ-PLYSIHN----------HISYSNLSPSQKAFSLSIS-SIKEPNSYV 490
Query: 1350 QAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARL 1171
+A QD+ W A+ EL ALE N TW LTPLP K+ +G KWV+K+K + DG+IER+KARL
Sbjct: 491 EAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARL 550
Query: 1170 VAKGYLLVEGIDFLRVF 1120
VAKGY E +D+L F
Sbjct: 551 VAKGYTQTETLDYLDTF 567
>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1311
Score = 341 bits (875), Expect(2) = e-147
Identities = 175/380 (46%), Positives = 233/380 (61%), Gaps = 2/380 (0%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
+ +FSPVAK VR+L+A+ W L +D+NNAFLHG LDEEVYM P G
Sbjct: 885 YLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHGELDEEVYMQVPPGLSVPNSQ 944
Query: 955 EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLIIYVDDV 776
VC L+RSLY LKQASRQW + S LI GF +S D+ LF++ G+ L++YVDD+
Sbjct: 945 MVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALLVYVDDI 1004
Query: 775 LITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDLLKDTG 596
++TG SE I + K L F IKDLG KYFLG+E+ RS+ G HL QRKY +D+L D+G
Sbjct: 1005 ILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLDILSDSG 1064
Query: 595 LLGCKPVSTPFPQGFNISAQQGPSFLDVA--KFRRLIGRLLYLNMSRPDISYGIQQLSQF 422
+LGC+P TP + A G A +RRLIGRL+YL +RPDI+Y +QQLSQ+
Sbjct: 1065 MLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRLIYLTNTRPDITYAVQQLSQY 1124
Query: 421 VHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLTGYCI 242
+ P H AA +L+YLKGT G+F A+ D+DW C +R+S TG+ I
Sbjct: 1125 MSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKSTTGFVI 1184
Query: 241 FFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGLWCDN 62
+ G S S+EAEYR+MA T CELQWL + +D + + P ++CDN
Sbjct: 1185 YLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLTYLLQDFRHNFTKPATIYCDN 1244
Query: 61 KAALHITANPVFHERTKHLD 2
++A+ I NPVFHERTKH++
Sbjct: 1245 QSAIQIATNPVFHERTKHIE 1264
Score = 210 bits (534), Expect(2) = e-147
Identities = 127/323 (39%), Positives = 173/323 (53%), Gaps = 18/323 (5%)
Frame = -3
Query: 2034 FWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKFE 1855
FW Y LL A +++N +P+ L SPYE L+ +P VFGCLCYASTL +R+K +
Sbjct: 582 FWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKLD 641
Query: 1854 PRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQF---PFHAIASPSVELPLPM 1684
PRA C+F+G+ KGY +Y+L + SR+V+FYE F P + P LP
Sbjct: 642 PRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILPK 701
Query: 1683 SFPDYPED---------------DDTHIAIDSGKQHPVTSSAPKIPEHLGRGHRVKTQPR 1549
SF P D D T + + S + + P R R K P
Sbjct: 702 SFNISPHDPIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPR---RSTRPKHAPT 758
Query: 1548 WLSDYVTNSVQVGLPEISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSAC 1369
+L DY +S+ ++S S + + Y S LS ++ F+ I+ S
Sbjct: 759 YLQDY-HHSLSSHDTKVSTSSRYPLSSVLSY----------SRLSHTHKHFVMSIS-STV 806
Query: 1368 EPSTYSQAAQDKGWVEAMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIE 1189
EPS+Y++A+Q W++AM ELQAL+ N TW+LT LP K AIG +WVYKIK DGSIE
Sbjct: 807 EPSSYAEASQYDCWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIE 866
Query: 1188 RYKARLVAKGYLLVEGIDFLRVF 1120
RYKARLVAKGY +EG+D+L F
Sbjct: 867 RYKARLVAKGYTQMEGLDYLYAF 889
>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 335 bits (859), Expect(2) = e-146
Identities = 171/384 (44%), Positives = 245/384 (63%), Gaps = 6/384 (1%)
Frame = -2
Query: 1135 FFESFSPVAKTVSVRMLIALATQQCWPLHHIDINNAFLHGFLDEEVYMIPPEGYFKAKPG 956
++++FSPVAK +V+ L+++A + W LH +DI+NAFL+G L EE+YM P GY + G
Sbjct: 1037 YYDTFSPVAKMTTVKTLLSVAAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMKQGG 1096
Query: 955 -----EVCLLRRSLYGLKQASRQWNIEFSEKLIGFGFVQSAHDNCLFVKRDGNQFLGLII 791
V L++SLYGLKQASRQW ++FS L GF +S D+ LF + G ++ L++
Sbjct: 1097 VLPQNPVLKLQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIALLV 1156
Query: 790 YVDDVLITGTSEDLICSLKKYLHNLFTIKDLGAAKYFLGLELFRSAHGTHLSQRKYIMDL 611
YVDD++I G +++ I LKK L F ++DLG KYFLGLE+ R+ G + QRKY M+L
Sbjct: 1157 YVDDIVIAGNNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYTMEL 1216
Query: 610 LKDTGLLGCKPVSTPFPQGFNISAQQGPSFLDVAK-FRRLIGRLLYLNMSRPDISYGIQQ 434
L+DTGLLGC+P + P +S +D + +RRL+G+L+YL ++RPDI+Y I +
Sbjct: 1217 LEDTGLLGCRPSTIPMEPSLKLSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYAINR 1276
Query: 433 LSQFVHAPLQAHWDAAMHLLKYLKGTPSLGLFYPVGNVHTFHAYCDADWGTCLVTRRSLT 254
L QF +P +H AA ++ YLKGT LGLFY + AY DADWG+C+ +RRS +
Sbjct: 1277 LCQFSSSPKNSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRRSTS 1336
Query: 253 GYCIFFGGSLXXXXXXXXXXXXXXSAEAEYRSMAATVCELQWLLNVAKDLHISASLPVGL 74
G C+F G SL SAE+EYR+MA E+ WL+ + + + + PV L
Sbjct: 1337 GICMFLGDSLISWKSKKQNMASSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTKPVPL 1396
Query: 73 WCDNKAALHITANPVFHERTKHLD 2
+CD+ AA+HI N VFHERTKH++
Sbjct: 1397 FCDSTAAIHIANNAVFHERTKHIE 1420
Score = 213 bits (542), Expect(2) = e-146
Identities = 129/307 (42%), Positives = 175/307 (57%), Gaps = 1/307 (0%)
Frame = -3
Query: 2037 KFWPYTLLTAVHIMNSLPSALLGWKSPYELLNKEMPRYDRFMVFGCLCYASTLGPHRRKF 1858
+FW +L+AV ++N LP+ LL KSP+ELL+ ++P Y VFGCLCY ST R KF
Sbjct: 766 EFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKF 825
Query: 1857 EPRASACVFLGYVTGVKGYRLYDLTSKMVFISRDVIFYEHQFPFHAIASPSVELPLPMSF 1678
PRA ACVFLGY +G KGY+L DL + + ISR V+FYE FPF + + +P
Sbjct: 826 APRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPF------TDKTIIPRDV 879
Query: 1677 PDYPEDDDTHIAIDSGKQHPVTS-SAPKIPEHLGRGHRVKTQPRWLSDYVTNSVQVGLPE 1501
D D H I++ P TS SAPK+ R P +L DY N+V P+
Sbjct: 880 FDLV--DPVHENIEN---PPSTSESAPKV-----SSKRESRPPGYLQDYFCNAV----PD 925
Query: 1500 ISKGSLAQIQNPTPYALKCFPHQSSSFLSPSYAAFLTQITGSACEPSTYSQAAQDKGWVE 1321
++K Y L + + + LS + A++ + EP TY+QA + K W++
Sbjct: 926 VTK--------DVRYPLNAYINYTQ--LSEEFTAYICAV-NKYPEPCTYAQAKKIKEWLD 974
Query: 1320 AMNKELQALEDNETWELTPLPAGKKAIGSKWVYKIKRHPDGSIERYKARLVAKGYLLVEG 1141
AM E+ ALE TW + LP GKK IG KWV+K+K + DGS+ER+KARLVAKGY EG
Sbjct: 975 AMEIEIDALESTNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREG 1034
Query: 1140 IDFLRVF 1120
+D+ F
Sbjct: 1035 LDYYDTF 1041