BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00043111
         (1746 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       554   0.0  
gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposo...   493   e-164
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   494   e-159
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   464   e-150
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]   450   e-148
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     463   e-146
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   444   e-146
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   442   e-143
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   446   e-140
gb|KRY06569.1| Retrovirus-related Pol polyprotein from transposo...   421   e-137
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   437   e-136
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     434   e-136
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   434   e-135
gb|KYP39716.1| Retrovirus-related Pol polyprotein from transposo...   425   e-133
gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc...   417   e-130
gb|KYP31134.1| Retrovirus-related Pol polyprotein from transposo...   410   e-130
gb|ABF96044.1| transposon protein, putative, unclassified [Oryza...   414   e-129
gb|AAS98437.1| putative polyprotein [Oryza sativa Japonica Group]     413   e-129
emb|CAE04259.3| OSJNBa0089N06.20 [Oryza sativa Japonica Group]        412   e-128
gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group]     412   e-128

>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  554 bits (1428), Expect = 0.0
 Identities = 299/564 (53%), Positives = 374/564 (66%), Gaps = 11/564 (1%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  SF GYA++TA+++LN V SKSV +TP ELW GRK +LR+ RIWGCPAHVL    +K+
Sbjct: 625  LPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKL 684

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
            E RS++C+F+GYPK +RG  F  PQ+ KVFVSTNATFLE+              +  R +
Sbjct: 685  EPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFLEE--------------DHXRNH 730

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPL 1206
             P S I                  V     +     P+  T+            +V    
Sbjct: 731  QPRSKI------------------VLKEMFKNATDKPSSSTK------------VVDK-- 758

Query: 1205 GAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEED 1026
             A   ++ H  QEL                RRSGRV+  P+RYL   E+   +  +  ED
Sbjct: 759  -ANISDQSHTSQEL-------------RVPRRSGRVVHQPNRYLGLVETQIIIPDDGVED 804

Query: 1025 PTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDGK 846
            P +YK+AM D+D D W  AM+ EM+SMY  SV  LVDLP+ VKPIGCKW+YKRKR   GK
Sbjct: 805  PLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGK 864

Query: 845  VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 666
            V+T+KARLVAKG+TQ+EG+DYEETFSPVAMLKSIRILLSIA  ++YE+WQMDVKTAFLNG
Sbjct: 865  VQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNG 924

Query: 665  SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDEP 486
            +L+E IYM+QP+GFI + QE +VCKL+KSI+GLKQASRSWNI+FD A+KSYGF+QN+DEP
Sbjct: 925  NLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEP 984

Query: 485  CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIFR 306
            CVYKKI ++ V FL+LYVDDILLIGND+  LT  K WL  QF MKDLGEA Y+LGI+I R
Sbjct: 985  CVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVR 1044

Query: 305  DRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP*DS**SGIHE---- 138
            +RKNK +A+SQA YID +L R+ MQNSKKGQ PFRHGIHLS+   P       + +    
Sbjct: 1045 NRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTP--QEVEDMRNI 1102

Query: 137  -----EGSL--CLGCRKPHVCYAV 87
                  GSL   + C +P +CY+V
Sbjct: 1103 PYSSAVGSLMYAMLCTRPDICYSV 1126



 Score =  107 bits (267), Expect = 1e-20
 Identities = 47/59 (79%), Positives = 52/59 (88%)
 Frame = -3

Query: 178  EHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            E CPKTP EVE M+ +PY+SAVGSLMYAMLCTRPDICY+VGIVSRYQSNPG +HW  VK
Sbjct: 1087 EQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVK 1145


>gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 676

 Score =  493 bits (1270), Expect = e-164
 Identities = 256/528 (48%), Positives = 350/528 (66%), Gaps = 2/528 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  +  GYA++++ YLLN V +KS+  TP E+W GRKPNL+HI++WGC A+V K +++K+
Sbjct: 121  LPINLWGYALESSAYLLNKVPTKSLSTTPYEIWKGRKPNLKHIKVWGCHAYVKKLQIDKL 180

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
            E+RS+ C FIGYPK T  Y+F  P D KVFV+  ATFLE  ++ E     ++ L+E++E 
Sbjct: 181  EARSQKCRFIGYPKETMRYYFFHPFDHKVFVARGATFLEREFLAEGCHGKEIDLDEIQEA 240

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVA-GSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTP 1209
              +++                  +    SS    E P  V  +   P +E D+ P+    
Sbjct: 241  SETTNAQEHEMENEQPFFDVLKLMQRLPSSTNLVEEPTIVQEQVNEPTLEQDQQPL---- 296

Query: 1208 LGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRY-LLYGESFEAVSTEQE 1032
                  NE  R+  +              P+RRS R  R P+R  LL  +         +
Sbjct: 297  ------NEVQRDCTI------------QVPLRRSSREHRAPNRLNLLVHDDTTYEVDHSD 338

Query: 1031 EDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGID 852
            +DP SY+EA+  +D + WR AM+SEM+SM    V  LV+    +KPIGCKWVYK+K G D
Sbjct: 339  DDPNSYEEAIRSLDHEKWREAMESEMESMKINKVWTLVEASKDIKPIGCKWVYKKKIGAD 398

Query: 851  GKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFL 672
            GKVETYKARLVAKG+ Q+EGIDY+ETFSP+AMLKSIRILL+IAA++DYE+WQMDVKT FL
Sbjct: 399  GKVETYKARLVAKGYRQKEGIDYDETFSPMAMLKSIRILLAIAAYYDYEIWQMDVKTTFL 458

Query: 671  NGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLD 492
            NG L E +YM QP+GFI     H+VCKL++SI+GLKQASRSWNI+F++ +K++ F +  +
Sbjct: 459  NGELKEDVYMTQPEGFITSSDHHKVCKLERSIYGLKQASRSWNIQFNKTIKNFDFVRCEE 518

Query: 491  EPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRI 312
            EPCVYK++  + + FL+LYVDDILLIGNDI  L S K WL++QF MKDLGEA+Y+LGI+I
Sbjct: 519  EPCVYKRVSGSTIIFLMLYVDDILLIGNDIPSLQSTKIWLSEQFSMKDLGEAAYILGIKI 578

Query: 311  FRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            +RDR  + + LSQ++YI+ IL+R+ M+NSK+G  P   G+ LSR   P
Sbjct: 579  YRDRSKRMLGLSQSMYINTILKRYNMENSKRGYLPIGTGVTLSREDCP 626



 Score = 79.3 bits (194), Expect = 6e-12
 Identities = 36/58 (62%), Positives = 43/58 (74%)
 Frame = -3

Query: 190 TCHGEHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEH 17
           T   E CPKT  E   M +VPYASAVG++MY M CT PDI +A+G+VSRYQ+NPG EH
Sbjct: 619 TLSREDCPKTLEERTRMNRVPYASAVGAIMYIMTCTCPDIAFALGVVSRYQANPGEEH 676


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  494 bits (1273), Expect(2) = e-159
 Identities = 275/545 (50%), Positives = 339/545 (62%), Gaps = 19/545 (3%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  SF G+ I+TA Y+LN+V SKSV KTP ELW GRKP+L+H+R+WGCP HVLKGK +K+
Sbjct: 565  LPISFWGHVIETAAYILNLVPSKSVFKTPTELWTGRKPSLKHVRMWGCPTHVLKGKTDKL 624

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
            E++ E C FIGYP+GT+G  F SP+DKK+ VSTNA +LE+ YI     KS++ L E+R +
Sbjct: 625  ETKIEFCFFIGYPRGTKGSLFYSPKDKKIIVSTNAHYLEEDYIRNHIPKSQLALNELRGD 684

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGS----SGRQ---------------TEAPPTVPT 1263
               + I                PL   S    SG +                EAP  VP 
Sbjct: 685  TIPARIFPSEHEPEPFMVRADIPLPQRSGRNVSGPEFETFDISLPVGDEENVEAPIHVPF 744

Query: 1262 RSPIPEMEGDRVPIVQTPLGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPS 1083
               I E++    P++  P     ++E   EQ +V              +RRSGR  RPP 
Sbjct: 745  EEHIDEVQDVVPPVINLPALQPQQDEGVAEQPVV--------------LRRSGRTRRPPV 790

Query: 1082 RYLLYGESFEAVSTEQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNG 903
            RY L GE+F+ +  E   +P                      M+SMY+  V +LV+ P G
Sbjct: 791  RYTLLGEAFDRIPEEVNTEP----------------------MESMYSNQVWELVEPPKG 828

Query: 902  VKPIGCKWVYKRKRGIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIA 723
            VKPIGCKW+YK+KRGIDGKV+TYKA+LVAKG+TQ+EGIDYEETFSPVAMLKSIRILLSIA
Sbjct: 829  VKPIGCKWIYKKKRGIDGKVQTYKAKLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIA 888

Query: 722  AHFDYEVWQMDVKTAFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWN 543
            A+FDYE+WQMDVKTAFLNGSLDE IYM Q +GFI  GQEH +CKL +SI+GLKQASRSWN
Sbjct: 889  AYFDYEIWQMDVKTAFLNGSLDECIYMKQLEGFITNGQEHLLCKLNRSIYGLKQASRSWN 948

Query: 542  IKFDQAVKSYGFDQNLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQ 363
              FDQ +K++GFDQ  D  CVYKK    KV FL                          +
Sbjct: 949  TCFDQTIKTFGFDQCHDVSCVYKKWNGKKVVFL--------------------------R 982

Query: 362  FDMKDLGEASYVLGIRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLS 183
            FDMK LGEA+++LGI++ R+RK + I LSQALYID IL RF MQ SKKG  PFRHGI LS
Sbjct: 983  FDMKYLGEAAHILGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLS 1042

Query: 182  RGALP 168
            +   P
Sbjct: 1043 KDQSP 1047



 Score = 98.6 bits (244), Expect(2) = e-159
 Identities = 45/59 (76%), Positives = 50/59 (84%)
 Frame = -3

Query: 178  EHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            +  PKTP E+E MK VPYASAVGSLMYAMLCTRPDI +AVG+VSR+QSNPG EHW  VK
Sbjct: 1044 DQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVK 1102


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  464 bits (1194), Expect = e-150
 Identities = 247/528 (46%), Positives = 323/528 (61%), Gaps = 2/528 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L + F GYA++T+ ++LN   SKSV KTP E+W G+ PNL  ++IWGC ++  +   +K+
Sbjct: 264  LPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITDKL 323

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
              +S+ C F+GYPK T+GY+F  P D KVFV  N  FLE  ++ +  S SKVLLEE+RE 
Sbjct: 324  GPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLLEEVRE- 382

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRV--PIVQT 1212
             P                                    VPT     +++  RV  PI+  
Sbjct: 383  -PQGD---------------------------------VPTSQEEHQLDLRRVVEPILVE 408

Query: 1211 PLGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQE 1032
            P   + E   H                              P R+  +     A+   + 
Sbjct: 409  PEVRRSERSRHE-----------------------------PDRFRDWVMDDHALFMIES 439

Query: 1031 EDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGID 852
            ++PTSY+EA+   D D W  A  SEM+SM    V  LVDLP+GVKPI CKW++K+K  +D
Sbjct: 440  DEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMD 499

Query: 851  GKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFL 672
            G ++ YKA LVAKG+ Q  GIDY+ET+SPVAMLKSIRILL+ AAH+DYE+WQMDVKTAFL
Sbjct: 500  GNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFL 559

Query: 671  NGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLD 492
            NG+L+E +YM QP+GF       +VCKL +SI+GLKQASRSWN++F++A+K + F +N +
Sbjct: 560  NGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEE 619

Query: 491  EPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRI 312
            EPCVYKK   + V FLVLYVDDILL+GNDI +L S K WL   F MKD+GEA+Y+LGIRI
Sbjct: 620  EPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRI 679

Query: 311  FRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            +RDR NK I LSQ  YID +L RF M +SKKG  P  HGI LS+   P
Sbjct: 680  YRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCP 727



 Score = 82.4 bits (202), Expect = 8e-13
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -3

Query: 172 CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
           CP T  E E M K+PYASA+GS+MYAML TRPD+  A+ + SRYQS+PG  HWIVV+
Sbjct: 726 CPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVR 782


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score =  450 bits (1157), Expect = e-148
 Identities = 239/415 (57%), Positives = 285/415 (68%), Gaps = 15/415 (3%)
 Frame = -2

Query: 1286 EAPPTVPTRSPIPEMEGDRVPIVQTPLGAKDENEEHREQELVGXXXXXXXXXXXXPVRRS 1107
            EAP  V     I E++    P++        ++E    Q +V              +RRS
Sbjct: 37   EAPIHVXFXEHIDEVQDVVPPVINLXALQPQQBEGVAXQPVV--------------LRRS 82

Query: 1106 GRVIRPPSRYLLYGESFEAVSTEQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV* 927
            GR  RPP RY   GE+F+ +  E   +P  Y +A++D D D W  AM SEM+SMY+  V 
Sbjct: 83   GRTRRPPVRYTXLGEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEMESMYSNQVW 142

Query: 926  DLVDLPNGVKPIGCKWVYKRKRGIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKS 747
            +LV+ P GVKPIGCKW+YK+KRGIDGK +TYKA LVAKG+TQ+EGIDYEETFSPVAMLKS
Sbjct: 143  ELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYKAXLVAKGYTQKEGIDYEETFSPVAMLKS 202

Query: 746  IRILLSIAAHFDYEVWQMDVKTAFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGL 567
            IRILLSIAA+FDYE+WQMDVKTAFLNGSLDE IYM Q +GFI  GQEH +CKL +SI+GL
Sbjct: 203  IRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQXEGFIXNGQEHLLCKLNRSIYGL 262

Query: 566  KQASRSWNIKFDQAVKSYGFDQNLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTS 387
            KQASRSWN  FDQ +K++GFDQ  DE CVYKK    KV FLVLYVDDILLIGN IGMLTS
Sbjct: 263  KQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVDDILLIGNCIGMLTS 322

Query: 386  AKYWLAQQFDMKDLGEASYVLGIRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTP 207
             K WL+Q+FDMKDLGEA+++LGI++ R+RK K I LSQALYID IL RF MQ SKKG  P
Sbjct: 323  VKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALYIDTILNRFNMQGSKKGFLP 382

Query: 206  FRHGIHLSRGALP*DS**SGIHEE-------------GSL--CLGCRKPHVCYAV 87
            FRHGI LS+   P         EE             GSL   + C +P +C+AV
Sbjct: 383  FRHGIXLSKDQSP------KTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAV 431



 Score = 99.8 bits (247), Expect = 2e-18
 Identities = 45/59 (76%), Positives = 50/59 (84%)
 Frame = -3

Query: 178 EHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
           +  PKTP E+E MK VPYASAVGSLMYAMLCTRPDIC+AVG+VSR+QSN G EHW  VK
Sbjct: 392 DQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAVGMVSRFQSNXGREHWXAVK 450


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  463 bits (1192), Expect = e-146
 Identities = 257/572 (44%), Positives = 339/572 (59%), Gaps = 16/572 (2%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  SF GYA++TA   LN V SKSV KTP E+W G+ P+L  ++IWGC A+V + + +K+
Sbjct: 620  LPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKL 679

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
              +S+ C  +GYPK T+GY+F + +  KVFV+ +  FLE  ++    S  +V LEE++E 
Sbjct: 680  TPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQET 739

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVP-TRSPIPEMEGDRVPIVQTP 1209
                                               P TV  T  P  E +    P+V TP
Sbjct: 740  -----------------------------------PETVSATTEPQQEDQSVAPPVVDTP 764

Query: 1208 LGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEE 1029
                                           RRS R  R P RY   G     +     +
Sbjct: 765  AP-----------------------------RRSERSRRAPDRYT--GAEQRDILLLDND 793

Query: 1028 DPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDG 849
            +P +Y+EAM   D + W  AM SE++SMY   V +LVD P+GVK I CKW++K+K  +DG
Sbjct: 794  EPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDG 853

Query: 848  KVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLN 669
             V  YKARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLN
Sbjct: 854  NVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLN 913

Query: 668  GSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDE 489
            G+L E +YM+QP GF+      ++CKL+KSI+GLKQASRSWNI+FD+ +K +GF +N +E
Sbjct: 914  GNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEE 973

Query: 488  PCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIF 309
             CVYKK+  + + FL+LYVDDILLIGNDI ML S K  L   F MKDLGEA+Y+LGIRI+
Sbjct: 974  ACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIY 1033

Query: 308  RDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP*DS**SGIHEE-- 135
            RDR  + I LSQ+ YID +L+RF M +SKKG  P  HGI+LS+   P        H+E  
Sbjct: 1034 RDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCP------QTHDERN 1087

Query: 134  -----------GSL--CLGCRKPHVCYAVYPT 78
                       GS+   + C +P V YA+  T
Sbjct: 1088 KMGMVPYASAIGSIMYAMLCTRPDVSYALSAT 1119



 Score = 81.6 bits (200), Expect = 2e-12
 Identities = 36/57 (63%), Positives = 42/57 (73%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+T  E   M  VPYASA+GS+MYAMLCTRPD+ YA+   SRYQS+PG  HW  VK
Sbjct: 1079 CPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVK 1135


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  444 bits (1143), Expect = e-146
 Identities = 222/356 (62%), Positives = 276/356 (77%), Gaps = 13/356 (3%)
 Frame = -2

Query: 1115 RRSGRVIRPPSRYLLYGESFEAVSTEQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTK 936
            RRSGR IR P RY   GE+  AV+   ++DP ++K AM+D+D + W+ AM  E++SMY+ 
Sbjct: 115  RRSGREIRLPIRYRENGEAQVAVTDGSDDDPLTFKMAMDDVDREKWQEAMKLEIESMYSN 174

Query: 935  SV*DLVDLPNGVKPIGCKWVYKRKRGIDGKVETYKARLVAKGFTQREGIDYEETFSPVAM 756
            SV  LVDLP G+KPIGCKW+YK KRG +GKVET+KARLVAKGFTQ+EG+DYE+TFSPV M
Sbjct: 175  SVWKLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXM 234

Query: 755  LKSIRILLSIAAHFDYEVWQMDVKTAFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSI 576
            LKSIRILLSI A++DYE+WQMDVKT FLNG L+E IYM+QP+GF+ K QE +VCKL++SI
Sbjct: 235  LKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQEQKVCKLQRSI 294

Query: 575  FGLKQASRSWNIKFDQAVKSYGFDQNLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGM 396
            +GLKQASRSWNI F++A+KSYGF+QNL EPCVYK+I  +KV FLVLYVDDILLIGND+  
Sbjct: 295  YGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVES 354

Query: 395  LTSAKYWLAQQFDMKDLGEASYVLGIRIFRDRKNKRIALSQALYIDNILERFAMQNSKKG 216
            L+  K WLA QF MKDLGEASY+LGI++ RDRKN+ +ALSQA YID +L +FAM+NSKKG
Sbjct: 355  LSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKG 414

Query: 215  QTPFRHGIHLSRGALP*DS**SGIHEE-----------GSL--CLGCRKPHVCYAV 87
              P RHG+HLS+   P     +   EE           GSL   + C +P +C+AV
Sbjct: 415  NLPSRHGVHLSKEQCP----KTPQDEEKMRRVPYASAVGSLMYAMLCTRPDICFAV 466



 Score =  107 bits (266), Expect = 9e-21
 Identities = 46/59 (77%), Positives = 53/59 (89%)
 Frame = -3

Query: 178 EHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
           E CPKTP + E M++VPYASAVGSLMYAMLCTRPDIC+AVG+VSRYQSNPG +HW+ VK
Sbjct: 427 EQCPKTPQDEEKMRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVK 485


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  442 bits (1136), Expect = e-143
 Identities = 237/520 (45%), Positives = 317/520 (60%)
 Frame = -2

Query: 1727 GYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKMESRSEV 1548
            G   +   + +N V SKSV K P E+W G++P+L  ++IWGC  +V + + +K+  +S+ 
Sbjct: 322  GLRSRDTAFTINKVPSKSVDKIPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDK 381

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMRENLPSSSI 1368
            C F+GY K T+GY+F + ++ KVFV+ +  FLE  +I   +S S V LEE++        
Sbjct: 382  CFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLEEIQ-------- 433

Query: 1367 XXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPLGAKDEN 1188
                                       E P    T +   + E D V  V          
Sbjct: 434  ---------------------------ETPENASTSTQPQQAEQDVVQQV---------- 456

Query: 1187 EEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEEDPTSYKE 1008
                EQ +V               RRS R+ R P+RY L       +     ++PT Y+E
Sbjct: 457  ----EQVVVEPVVEALAS------RRSKRIRRTPARYALLTTGQRDILLLDNDEPTIYEE 506

Query: 1007 AMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDGKVETYKA 828
            AM   D + W  AM S+++SM+   V +LVD P+GVK I CKWV+K+   +DG V  YKA
Sbjct: 507  AMVGPDSEKWLGAMKSKIESMHVNQVWNLVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKA 566

Query: 827  RLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNGSLDERI 648
            RLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTA LNG+LDE +
Sbjct: 567  RLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDV 626

Query: 647  YMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDEPCVYKKI 468
            YM QP GF+      ++CKL+KSI+GLK+ASRSWNI+FD+ VK+ GF +N +EPCVYKKI
Sbjct: 627  YMTQPKGFVDPQSAKKICKLQKSIYGLKKASRSWNIRFDKVVKALGFVKNEEEPCVYKKI 686

Query: 467  KDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIFRDRKNKR 288
              + + FL+LYVD+ILLIGNDI ML S K  L   F MKDLGE + +LGIRI+RDR  + 
Sbjct: 687  SGSALVFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDLGEPTCILGIRIYRDRSKRL 746

Query: 287  IALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            I LSQ+ YID +L+RF MQNSKKG  P  HGI+L +   P
Sbjct: 747  IGLSQSTYIDKVLKRFNMQNSKKGFLPMSHGINLGKNQCP 786


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  446 bits (1148), Expect(2) = e-140
 Identities = 240/531 (45%), Positives = 324/531 (61%), Gaps = 5/531 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L   F GYA++TA ++LN+V +K V KTP E+W G+ P+L HI++WGC A V +   +K+
Sbjct: 595  LPIHFWGYALETAAHILNLVPTKKVAKTPHEMWTGKVPSLAHIKVWGCEAFVRRETQDKL 654

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
              RSE C F+GYPK + GY F  P +  VFV+  A F E   I + +S S + LEE++E+
Sbjct: 655  AERSERCFFLGYPKQSFGYLFYRPSEDVVFVARRAVFRERELIFKEDSGSTIDLEEIQES 714

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPL 1206
               +++                     +S +  E  P  PT   +P              
Sbjct: 715  SDDATLGE-------------------TSNQHEEEVPVGPTDVSLP-------------- 741

Query: 1205 GAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLY----GESFEAVSTE 1038
                                         +RRSGRV  PP  Y  +    G++F +  T 
Sbjct: 742  -----------------------------LRRSGRVSMPPEFYGFHITSDGDTFVSDRTL 772

Query: 1037 QE-EDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKR 861
               ++P +Y+EA+   +   W+ AMDSE+KSMY   V +LVD   G K +GCKW++K+K 
Sbjct: 773  INLDEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVPGRKTVGCKWIFKKKT 832

Query: 860  GIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKT 681
             +DGKV T+KARLVAKGFTQ  G+DY+ETFSPVA +KSIRI+L+IAA  DYE+WQMDVKT
Sbjct: 833  DMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKT 892

Query: 680  AFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQ 501
            AFLNG L E +YM QP+GF+     ++VCKL++SI+GLKQASRSWN+ F + VK +GF +
Sbjct: 893  AFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEFGFSR 952

Query: 500  NLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLG 321
            + DE CVY K   + VTFLVLYVDDILL+GNDI  L   K WL + F MKDLGEA+Y+LG
Sbjct: 953  SEDESCVYVKASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEAAYILG 1012

Query: 320  IRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            IRI RDRK + I LSQ  Y++ +L+RF+M+NSKKG+ P +    LS+   P
Sbjct: 1013 IRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSP 1063



 Score = 84.0 bits (206), Expect(2) = e-140
 Identities = 36/56 (64%), Positives = 43/56 (76%)
 Frame = -3

Query: 169  PKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            P T  E+  M +VPYASAVGS+MYAM CTRPD+ +A+ +VSRYQ NPG  HWI VK
Sbjct: 1063 PSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVK 1118


>gb|KRY06569.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trichinella patagoniensis]
          Length = 618

 Score =  421 bits (1082), Expect = e-137
 Identities = 229/526 (43%), Positives = 310/526 (58%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  SF GYA++TA + LN   SKSV  TP ELW G+KP L  +++WGC A+V K + +K+
Sbjct: 87   LPLSFWGYALETAAFTLNRAPSKSVETTPYELWFGKKPKLSFLKVWGCDAYVEKLQPDKL 146

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
            E +SE C+FIGYPK T GY F    + K+FV+ N +FLE  ++ +  S  KV L+E+   
Sbjct: 147  EPKSEKCVFIGYPKETVGYTFYHRSEGKIFVAKNGSFLEKEFLSKEVSGRKVELDEVTVP 206

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPL 1206
             P                     L+  SS +++                   VP+  TP+
Sbjct: 207  AP---------------------LLESSSSQKS-------------------VPVTPTPI 226

Query: 1205 GAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEED 1026
              +  + +H   + V               RRS RV   P     YG     V     ++
Sbjct: 227  SEEVNDNDHETSDQVTTEP-----------RRSTRVRSAPE---WYGNPVLEVMLLDHDE 272

Query: 1025 PTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDGK 846
            PT+Y+EAM   D   W  AM SEM+SMY   V  LVDLP+  + I  KW++KRK   D  
Sbjct: 273  PTNYEEAMMSPDSAKWLEAMKSEMRSMYENKVWTLVDLPDDRQAIENKWIFKRKTNADSS 332

Query: 845  VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 666
            V  YKAR+V KG      +DY+ETF PVAM KS+R++L+IAA +DYE+WQMDVKTAFLNG
Sbjct: 333  VTIYKARIVGKG------VDYDETFKPVAMHKSVRVMLAIAAFYDYEIWQMDVKTAFLNG 386

Query: 665  SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDEP 486
             + E +YMMQP+GF+     ++VCKL++SI+GL QAS SWN +FD  +K++GF Q   E 
Sbjct: 387  FIKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASWSWNKRFDSVIKAFGFIQTFGEA 446

Query: 485  CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIFR 306
            C+YKK+  + V FL+LYVDDILLIGNDI  L S K +L + F MKDLGEA+Y+LGI+I+R
Sbjct: 447  CIYKKVSGSSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYR 506

Query: 305  DRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            DR  + I LSQ+ Y+D +L++F M  +KKG  P   G+ LS    P
Sbjct: 507  DRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGVKLSTTQSP 552



 Score = 84.7 bits (208), Expect = 1e-13
 Identities = 35/56 (62%), Positives = 43/56 (76%)
 Frame = -3

Query: 169 PKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
           P T  + E MK +PYASA+GS+MYAMLCTRPD+C A+ +  RYQSNPG +HW  VK
Sbjct: 552 PTTAEDREKMKVIPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTTVK 607


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  437 bits (1123), Expect(2) = e-136
 Identities = 238/527 (45%), Positives = 319/527 (60%), Gaps = 1/527 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  SF GYA++TA + LN V SKSV KTP E+W G++P+L  ++IWGC  +V + + +K+
Sbjct: 1096 LLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKL 1155

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
              +S  C F+GYPK T+GY+  + ++ KVFV+ +  FL+  +I   +S S V LEE++E 
Sbjct: 1156 TPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSIVRLEEIQET 1215

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRV-PIVQTP 1209
              ++S                           T   P    +  + ++E   V P+V+ P
Sbjct: 1216 PENAS---------------------------TSTQPQQAEQDVVQQVEQVVVEPVVEAP 1248

Query: 1208 LGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEE 1029
                                           RRS R+ R P+RY L       +     +
Sbjct: 1249 AS-----------------------------RRSERIRRTPARYALLTIGQRDILLLDND 1279

Query: 1028 DPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDG 849
            +PT+Y+EAM   D + W  AM SE++SM+   V +LVD P+GVK I CKWV+K+K  +DG
Sbjct: 1280 EPTTYEEAMVGPDSEKWPGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTYVDG 1339

Query: 848  KVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLN 669
             V  YKARLVAKGF Q +G+DY+ETFSPVAMLKSI+I+L+IAA+FDYE+WQMDVKTAFLN
Sbjct: 1340 NVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFDYEIWQMDVKTAFLN 1399

Query: 668  GSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDE 489
            G+LDE                       KSI+GLKQASRSWNI+FD+ VK+ GF +N +E
Sbjct: 1400 GNLDE----------------------DKSIYGLKQASRSWNIRFDEVVKALGFVKNEEE 1437

Query: 488  PCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIF 309
            PCVYKKI  + + FL+LYVDDILLIGNDI ML S K  L   F MKDLGEA+Y++GIRI+
Sbjct: 1438 PCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYIMGIRIY 1497

Query: 308  RDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            RDR  + I LSQ+ YID +L+RF MQ+SKKG  P  HGI+  +   P
Sbjct: 1498 RDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINHGKNQCP 1544



 Score = 79.7 bits (195), Expect(2) = e-136
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = -3

Query: 184  HGEH-CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIV 8
            HG++ CP+T  E   M  +PYA A+GS+MYAMLCTR D+ YA+   SRYQS+PG  HWI 
Sbjct: 1538 HGKNQCPQTTDERNKMSVIPYAWAIGSIMYAMLCTRIDVSYALSATSRYQSDPGESHWIA 1597

Query: 7    VK 2
            VK
Sbjct: 1598 VK 1599


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  434 bits (1116), Expect = e-136
 Identities = 236/523 (45%), Positives = 313/523 (59%)
 Frame = -2

Query: 1736 SFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKMESR 1557
            SF GYA++TA + LN V SKSV KTP E+W G++P+L  ++IW C               
Sbjct: 501  SFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC--------------- 545

Query: 1556 SEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMRENLPS 1377
                      + T+GY+F + ++ KVFV+ +  FLE  +I   +S S V L+E++E   +
Sbjct: 546  ----------EETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPEN 595

Query: 1376 SSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPLGAK 1197
            +S                      S+  Q E          + E      P+V+ P    
Sbjct: 596  AST---------------------STQPQVEQDVVQQVEQVVVE------PVVEAPAS-- 626

Query: 1196 DENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEEDPTS 1017
                                       RRS R+ R P+RY L       +     ++PT+
Sbjct: 627  ---------------------------RRSERIRRTPARYALLTSGQRDILLLDNDEPTT 659

Query: 1016 YKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDGKVET 837
            Y+EAM   D + W  AM SE++SM+   V +LVD P+GVK I CKW++K+   +DG V  
Sbjct: 660  YEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHI 719

Query: 836  YKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNGSLD 657
            Y ARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG+LD
Sbjct: 720  YNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLD 779

Query: 656  ERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDEPCVY 477
            E +YM QP GF+      ++CKL+KSI+ LKQASRSWNI+FD+ VK+ GF +N +EPCVY
Sbjct: 780  EDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVY 839

Query: 476  KKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIFRDRK 297
            KKI  + + FL+LYVDDILLIGNDI ML S K  L   F MKDLGEA+Y+LGIRI+RDR 
Sbjct: 840  KKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRS 899

Query: 296  NKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
             + I LSQ+ YID +L+RF MQ+SKKG  P  HGI+L +   P
Sbjct: 900  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCP 942



 Score = 77.0 bits (188), Expect = 4e-11
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+T  E   M  +PYASA+GS+MYAMLCTR D+ YA+   SRYQS+ G  HWI VK
Sbjct: 941  CPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVK 997


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  434 bits (1116), Expect = e-135
 Identities = 236/523 (45%), Positives = 313/523 (59%)
 Frame = -2

Query: 1736 SFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKMESR 1557
            SF GYA++TA + LN V SKSV KTP E+W G++P+L  ++IW C               
Sbjct: 588  SFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC--------------- 632

Query: 1556 SEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMRENLPS 1377
                      + T+GY+F + ++ KVFV+ +  FLE  +I   +S S V L+E++E   +
Sbjct: 633  ----------EETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPEN 682

Query: 1376 SSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPLGAK 1197
            +S                      S+  Q E          + E      P+V+ P    
Sbjct: 683  AST---------------------STQPQVEQDVVQQVEQVVVE------PVVEAPAS-- 713

Query: 1196 DENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRYLLYGESFEAVSTEQEEDPTS 1017
                                       RRS R+ R P+RY L       +     ++PT+
Sbjct: 714  ---------------------------RRSERIRRTPARYALLTSGQRDILLLDNDEPTT 746

Query: 1016 YKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGIDGKVET 837
            Y+EAM   D + W  AM SE++SM+   V +LVD P+GVK I CKW++K+   +DG V  
Sbjct: 747  YEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHI 806

Query: 836  YKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNGSLD 657
            Y ARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG+LD
Sbjct: 807  YNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLD 866

Query: 656  ERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLDEPCVY 477
            E +YM QP GF+      ++CKL+KSI+ LKQASRSWNI+FD+ VK+ GF +N +EPCVY
Sbjct: 867  EDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVY 926

Query: 476  KKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGIRIFRDRK 297
            KKI  + + FL+LYVDDILLIGNDI ML S K  L   F MKDLGEA+Y+LGIRI+RDR 
Sbjct: 927  KKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRS 986

Query: 296  NKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
             + I LSQ+ YID +L+RF MQ+SKKG  P  HGI+L +   P
Sbjct: 987  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCP 1029



 Score = 77.0 bits (188), Expect = 4e-11
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+T  E   M  +PYASA+GS+MYAMLCTR D+ YA+   SRYQS+ G  HWI VK
Sbjct: 1028 CPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVK 1084


>gb|KYP39716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score =  425 bits (1092), Expect(2) = e-133
 Identities = 239/530 (45%), Positives = 315/530 (59%), Gaps = 4/530 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHV--LKGKME 1572
            L  S  G A++TAVY+LN V SK+V KTP ELW G++P+L+H+ IWGCPA     +    
Sbjct: 599  LPESLWGEALKTAVYILNRVPSKAVNKTPYELWMGKRPSLKHLHIWGCPAEARPYRPHES 658

Query: 1571 KMESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMR 1392
            K+ESR+  C F+GYP+ +RGY F +P  +  F + NA FLED    + E+   V+ EE  
Sbjct: 659  KLESRTVSCYFVGYPERSRGYKFYNPTTRSFFETGNARFLEDVEFGKEENIRNVVFEE-- 716

Query: 1391 ENLPSSSIXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQT 1212
            E +  S                           Q   P T+P  +P+    GD   ++  
Sbjct: 717  EPVIDSD--------------------------QVLVPITIPVPTPVI---GDNHGVIPD 747

Query: 1211 PLGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRP--PSRYLLYGESFEAVSTE 1038
             +  +D  E      L              P+RRS R  +   P  Y+++ +  E     
Sbjct: 748  IVPTQDNIEV-----LPQIPIEQAQQSQEVPLRRSTRERKSAIPDDYIVFLQEHEDGIGL 802

Query: 1037 QEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRG 858
             E+DP ++ +AM+      W  AM  EMKSM    V DLV+LP GVKPIGCKW++K KR 
Sbjct: 803  TEDDPINFCQAMQSSSSQKWIDAMKDEMKSMQDNDVWDLVELPEGVKPIGCKWIFKTKRD 862

Query: 857  IDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTA 678
              G +E YKARLVAKGFTQ+EGIDY+ETFSPV+   S RI++++ AH+D E+ QMDVKTA
Sbjct: 863  SKGNIERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTA 922

Query: 677  FLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQN 498
            FLNG ++E IYMMQP+ F+    +  VCKLKKSI+GLKQASR W  KF Q + SYGF+ N
Sbjct: 923  FLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQASRQWYHKFHQVITSYGFEAN 982

Query: 497  LDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGI 318
            + + CVY K   +K  FLVLYVDDILL  +DIG+L   K +L + F+MKDLGEAS+VLGI
Sbjct: 983  IVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGEASFVLGI 1042

Query: 317  RIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHGIHLSRGALP 168
            +I RDR +  I LSQ  YID +L+RF M++SK G TP   G   S    P
Sbjct: 1043 KILRDRSHGIIRLSQENYIDKVLDRFGMKDSKPGDTPIAKGDKFSLKQCP 1092



 Score = 81.3 bits (199), Expect(2) = e-133
 Identities = 35/59 (59%), Positives = 43/59 (72%)
 Frame = -3

Query: 178  EHCPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            + CP    E   M+K+PYASAVGSLMYA +CTRPDI + VG++ RY SNPG +HW  VK
Sbjct: 1089 KQCPNNDLERNEMQKIPYASAVGSLMYAQVCTRPDIAFIVGVLGRYLSNPGMQHWKAVK 1147


>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1407

 Score =  417 bits (1072), Expect(2) = e-130
 Identities = 233/521 (44%), Positives = 305/521 (58%), Gaps = 12/521 (2%)
 Frame = -2

Query: 1721 AIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAH--VLKGKMEKMESRSEV 1548
            A++TA ++LN + SKSVPKTP ELW G+KP L +  +WGCPA   V    M K++ ++  
Sbjct: 664  ALKTATHILNRIPSKSVPKTPFELWTGKKPTLNYFHVWGCPAEARVFNPNMGKLDLKTIS 723

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVST-NATFLEDRYIEECESKSKVLLEEMRENLPSSS 1371
            C FIGYP  ++ Y F  P     F+ T +A FLE+  I+   +  +V+LEE R  +P   
Sbjct: 724  CHFIGYPDKSKAYRFYCPNQFTKFIETRHAVFLENDIIKGSMTPREVVLEEKRNYVPMPI 783

Query: 1370 IXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPLGAKDE 1191
            I                  V  S  R  +A P                P   +   + DE
Sbjct: 784  IKEPVFSTHTH--------VTPSIERHNDATPA-------------EAPATTSSSISNDE 822

Query: 1190 NEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRP--PSRYLLY--GESFEAVSTEQEE-- 1029
            N E  +Q  +             PVRRS RV +   PS Y+ Y   E  E +S E  E  
Sbjct: 823  NNEDAQQPQI-----VIDEQNNEPVRRSQRVRKSAIPSDYITYMNEEVNEPMSEEVNEPI 877

Query: 1028 ---DPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRG 858
               DP S+KEAM+      W  AM  EMKSM T  V DLV++P G K +GCKWVYK KR 
Sbjct: 878  LDNDPISFKEAMKGEHSSEWLKAMKDEMKSMSTNKVWDLVEIPEGAKTVGCKWVYKTKRD 937

Query: 857  IDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTA 678
              G ++ +K RLVAKGFTQREGIDY ETFSPV+   S RI++++ AH+D E+ QMDVKTA
Sbjct: 938  PKGNIKRFKVRLVAKGFTQREGIDYNETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTA 997

Query: 677  FLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQN 498
            FLNG L E +YM QP+GF+ KG+EH  C LKKSI+GLKQASR W +KFDQ ++ +GF +N
Sbjct: 998  FLNGDLYEDVYMAQPEGFVMKGKEHMGCYLKKSIYGLKQASRQWYLKFDQIIRQFGFKEN 1057

Query: 497  LDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLGI 318
              + C+Y K K++K  FL+LYVDDILL  N+  ML   K +LA +F+MKDLGEA+YVLGI
Sbjct: 1058 KKDDCIYAKFKESKFIFLILYVDDILLASNNRNMLLETKKFLASKFEMKDLGEATYVLGI 1117

Query: 317  RIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHG 195
             I+RDR N  + LSQ  YI+ +L+++ M N      P   G
Sbjct: 1118 EIYRDRSNGVLGLSQKAYIEKVLKKYNMHNCSASPAPIMKG 1158



 Score = 80.1 bits (196), Expect(2) = e-130
 Identities = 33/57 (57%), Positives = 41/57 (71%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CPK   E   MK +PYASAVGS+MYA +CTRPD+ +  G++ RYQSNP  EHW + K
Sbjct: 1166 CPKNEYEAAQMKSIPYASAVGSIMYAQVCTRPDLAFVTGMLGRYQSNPSLEHWKLAK 1222


>gb|KYP31134.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 830

 Score =  410 bits (1053), Expect = e-130
 Identities = 219/460 (47%), Positives = 294/460 (63%), Gaps = 2/460 (0%)
 Frame = -2

Query: 1745 LATSFCGYAIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAHVLKGKMEKM 1566
            L  +  GYA++++ YLLN V +KS+  TP E+W GRKPNL+HI++WGC A +      K+
Sbjct: 393  LPINLWGYALESSAYLLNKVPTKSLSTTPYEIWKGRKPNLKHIKVWGCHALL----RNKL 448

Query: 1565 ESRSEVCIFIGYPKGTRGYHFCSPQDKKVFVSTNATFLEDRYIEECESKSKVLLEEMREN 1386
            E+RS+ C FIGYPK T GY+F  P D KVFV+  ATFLE  ++ E     ++ L+E++E 
Sbjct: 449  EARSQKCRFIGYPKETMGYYFFHPSDHKVFVARGATFLEREFLAEGCHGKEIDLDEIQEA 508

Query: 1385 LPSSSIXXXXXXXXXXXXXXXXPLVA-GSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTP 1209
              +++                       SS    E P  V  +   P +E D+ P+    
Sbjct: 509  SETTNAQEHEMENEQPFFDVLKLTQRLPSSTNLVEEPTIVQEQVNEPTLEQDQQPL---- 564

Query: 1208 LGAKDENEEHREQELVGXXXXXXXXXXXXPVRRSGRVIRPPSRY-LLYGESFEAVSTEQE 1032
                  NE  R+  +              P+RRS R  R P+R  LL  +         +
Sbjct: 565  ------NEVQRDCTI------------QVPLRRSSREHRAPNRLNLLVHDDTTYEVDHND 606

Query: 1031 EDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKRGID 852
            +DP SY+EA+  +D + WR AM+SEM+SM    V  LV+    +KPIGCKWVYK+K G D
Sbjct: 607  DDPNSYEEAIRSLDHEKWREAMESEMESMKINKVWTLVEASKDIKPIGCKWVYKKKIGAD 666

Query: 851  GKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFL 672
            GKVETYKARLVAKG+ Q+EGIDY+ETFSP+AMLKSIRILL+IAA++DYE+W+MDVKTAFL
Sbjct: 667  GKVETYKARLVAKGYRQKEGIDYDETFSPMAMLKSIRILLAIAAYYDYEIWKMDVKTAFL 726

Query: 671  NGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNLD 492
            NG L E +YM QP+GFI     H+VCKL++SI+GLKQASRSWNI+F++ +K++ F +  +
Sbjct: 727  NGELKEDVYMTQPEGFITSSNHHKVCKLERSIYGLKQASRSWNIQFNKTIKNFDFVRCEE 786

Query: 491  EPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWL 372
            EPCVYK++  + + FL+LYVDDILLIGNDI  L S K WL
Sbjct: 787  EPCVYKRVSGSTIIFLMLYVDDILLIGNDIPSLQSTKIWL 826


>gb|ABF96044.1| transposon protein, putative, unclassified [Oryza sativa Japonica
            Group]
          Length = 1395

 Score =  414 bits (1063), Expect(2) = e-129
 Identities = 228/522 (43%), Positives = 303/522 (58%), Gaps = 13/522 (2%)
 Frame = -2

Query: 1721 AIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAH--VLKGKMEKMESRSEV 1548
            A++TA+++LN V SKSVPKTP ELW GR P+L H+R+WG PA   V    + K++ ++  
Sbjct: 645  ALKTAIHILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVS 704

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVST-NATFLEDRYIEECESKSKVLLEEMRENLPSSS 1371
            C FIGYP+ ++GY F  P     FV T +A FLED  I       ++ LEE R ++P+ S
Sbjct: 705  CHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPS 764

Query: 1370 IXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQ--TPLGAK 1197
                              +V      +  AP   P   P+  M     P++Q  T + A 
Sbjct: 765  TQEPFFSLPAD-------VVPAMPVIEVPAPVVTP---PVATMNESEEPVIQDSTEMVAT 814

Query: 1196 DENEEHREQ------ELVGXXXXXXXXXXXXPVRRSGRVIRPPSR--YLLYGESFEAVST 1041
             E E  + Q      +                 RRS RV R   R  Y +Y        +
Sbjct: 815  PEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVYNIE----ES 870

Query: 1040 EQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKR 861
              E+DPTSY+EAM       W  AM  EMKSM    V DL ++P G K +GCKWVYK K 
Sbjct: 871  HMEDDPTSYEEAMRSARSSEWLEAMKDEMKSMKLNDVWDLEEIPKGAKTVGCKWVYKTKY 930

Query: 860  GIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKT 681
               G +E +KARLVAKGFTQREGIDY ETFSPV+   S RI++++ AH+D E+ QMDVKT
Sbjct: 931  DSRGNIEKFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKT 990

Query: 680  AFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQ 501
            AFLNG L+E++YM QP GF+ KG E+  C+LK+SI+GLKQASR W +KFD  +K +GF +
Sbjct: 991  AFLNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQE 1050

Query: 500  NLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLG 321
            N+++ C+Y K K+ +  FL+LYVDDILL  +D+ +L   K +L+  FDMKDLGEASYVLG
Sbjct: 1051 NVEDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLG 1110

Query: 320  IRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHG 195
            I I RDR    + LSQ  YI+ +L++F M        P   G
Sbjct: 1111 IEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKG 1152



 Score = 78.6 bits (192), Expect(2) = e-129
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+   E+  MK  PYASAVGSL YA +CTRPD+ +  G++ R+QSNPG EHW +VK
Sbjct: 1160 CPRNQYELNEMKTKPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLVK 1216


>gb|AAS98437.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1362

 Score =  413 bits (1061), Expect(2) = e-129
 Identities = 226/522 (43%), Positives = 301/522 (57%), Gaps = 13/522 (2%)
 Frame = -2

Query: 1721 AIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAH--VLKGKMEKMESRSEV 1548
            A++TA+++LN V SKSVPKTP ELW GR P+L H+R+WG PA   V    + K++ ++  
Sbjct: 612  ALKTAIHILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVS 671

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVST-NATFLEDRYIEECESKSKVLLEEMRENLPSSS 1371
            C FIGYP+ ++GY F  P     FV T +A FLED  I       ++ LEE R ++P+ S
Sbjct: 672  CHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPS 731

Query: 1370 IXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQTPLGAKDE 1191
                              +V      +  AP   P   P+  M     P++Q        
Sbjct: 732  TQEPFFSLPAD-------VVPAMPVIEVPAPVVTP---PVATMNESEEPVIQDSTEMVVT 781

Query: 1190 NEEHREQELVGXXXXXXXXXXXXPV--------RRSGRVIRPPSR--YLLYGESFEAVST 1041
             EE  +Q  +                       RRS RV R   R  Y +Y        +
Sbjct: 782  PEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVYNIE----ES 837

Query: 1040 EQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKR 861
              E+DPTSY+EAM       W  AM  EMKSM   +V DL ++P G K +GCKWVYK K 
Sbjct: 838  HMEDDPTSYEEAMRSARSSEWLEAMKDEMKSMKLNNVWDLEEIPKGAKTVGCKWVYKTKY 897

Query: 860  GIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKT 681
               G +E +KARLVAKGFTQREGIDY ETFSPV+   S RI++++ AH+D E+ QMDVKT
Sbjct: 898  DSRGNIEKFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKT 957

Query: 680  AFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQ 501
            AFLNG L+E++YM QP GF+ KG E+  C+LK+SI+GLKQASR W +KFD  +K +GF +
Sbjct: 958  AFLNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQE 1017

Query: 500  NLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLG 321
            N+++ C+Y K K+ +  FL+LYVDDILL  +D+ +L   K +L+  FDMKDLGEASYVLG
Sbjct: 1018 NVEDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLG 1077

Query: 320  IRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHG 195
            I I RDR    + LSQ  YI+ +L++F M        P   G
Sbjct: 1078 IEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKG 1119



 Score = 78.6 bits (192), Expect(2) = e-129
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+   E+  MK  PYASAVGSL YA +CTRPD+ +  G++ R+QSNPG EHW +VK
Sbjct: 1127 CPRNQYELNEMKTKPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLVK 1183


>emb|CAE04259.3| OSJNBa0089N06.20 [Oryza sativa Japonica Group]
          Length = 1405

 Score =  412 bits (1059), Expect(2) = e-128
 Identities = 227/522 (43%), Positives = 303/522 (58%), Gaps = 13/522 (2%)
 Frame = -2

Query: 1721 AIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAH--VLKGKMEKMESRSEV 1548
            A++TA+++LN V SKSVPKTP ELW GR P+L H+R+WG PA   V    + K++ ++  
Sbjct: 655  ALKTAIHILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVS 714

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVST-NATFLEDRYIEECESKSKVLLEEMRENLPSSS 1371
            C FIGYP+ ++GY F  P     FV T +A FLED  I       ++ LEE R ++P+ S
Sbjct: 715  CHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPS 774

Query: 1370 IXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQ--TPLGAK 1197
                              +V      +  AP   P   P+  M     P++Q  T + A 
Sbjct: 775  TQEPFFSLPAD-------VVPAMPVIEVPAPVVTP---PVATMNESEEPVIQDSTEMVAT 824

Query: 1196 DENEEHREQ------ELVGXXXXXXXXXXXXPVRRSGRVIRPPSR--YLLYGESFEAVST 1041
             E E  + Q      +                 RRS RV R   R  Y +Y        +
Sbjct: 825  PEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVYNIE----ES 880

Query: 1040 EQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKR 861
              E+DPTSY+EAM       W  AM  EM+SM    V DL ++P G K +GCKWVYK K 
Sbjct: 881  HMEDDPTSYEEAMRSARSSEWLEAMKDEMESMKLNDVWDLEEIPKGAKTVGCKWVYKTKY 940

Query: 860  GIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKT 681
               G +E +KARLVAKGFTQREGIDY ETFSPV+   S RI++++ AH+D E+ QMDVKT
Sbjct: 941  DSRGNIEKFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKT 1000

Query: 680  AFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQ 501
            AFLNG L+E++YM QP GF+ KG E+  C+LK+SI+GLKQASR W +KFD  +K +GF +
Sbjct: 1001 AFLNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQE 1060

Query: 500  NLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLG 321
            N+++ C+Y K K+ +  FL+LYVDDILL  +D+ +L   K +L+  FDMKDLGEASYVLG
Sbjct: 1061 NVEDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLG 1120

Query: 320  IRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHG 195
            I I RDR    + LSQ  YI+ +L++F M        P   G
Sbjct: 1121 IEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKG 1162



 Score = 78.6 bits (192), Expect(2) = e-128
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+   E+  MK  PYASAVGSL YA +CTRPD+ +  G++ R+QSNPG EHW +VK
Sbjct: 1170 CPRNQYELNEMKTKPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLVK 1226


>gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1358

 Score =  412 bits (1059), Expect(2) = e-128
 Identities = 227/522 (43%), Positives = 303/522 (58%), Gaps = 13/522 (2%)
 Frame = -2

Query: 1721 AIQTAVYLLNMVLSKSVPKTPLELWNGRKPNLRHIRIWGCPAH--VLKGKMEKMESRSEV 1548
            A++TA+++LN V SKSVPKTP ELW GR P+L H+R+WG PA   V    + K++ ++  
Sbjct: 608  ALKTAIHILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVS 667

Query: 1547 CIFIGYPKGTRGYHFCSPQDKKVFVST-NATFLEDRYIEECESKSKVLLEEMRENLPSSS 1371
            C FIGYP+ ++GY F  P     FV T +A FLED  I       ++ LEE R ++P+ S
Sbjct: 668  CHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPS 727

Query: 1370 IXXXXXXXXXXXXXXXXPLVAGSSGRQTEAPPTVPTRSPIPEMEGDRVPIVQ--TPLGAK 1197
                              +V      +  AP   P   P+  M     P++Q  T + A 
Sbjct: 728  TQEPFFSLPAD-------VVPAMPVIEVPAPVVTP---PVATMNESEEPVIQDSTEMVAT 777

Query: 1196 DENEEHREQ------ELVGXXXXXXXXXXXXPVRRSGRVIRPPSR--YLLYGESFEAVST 1041
             E E  + Q      +                 RRS RV R   R  Y +Y        +
Sbjct: 778  PEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVYNIE----ES 833

Query: 1040 EQEEDPTSYKEAMEDIDVDHWRSAMDSEMKSMYTKSV*DLVDLPNGVKPIGCKWVYKRKR 861
              E+DPTSY+EAM       W  AM  EM+SM    V DL ++P G K +GCKWVYK K 
Sbjct: 834  HMEDDPTSYEEAMRSARSSEWLEAMKDEMESMKLNDVWDLEEIPKGAKTVGCKWVYKTKY 893

Query: 860  GIDGKVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKT 681
               G +E +KARLVAKGFTQREGIDY ETFSPV+   S RI++++ AH+D E+ QMDVKT
Sbjct: 894  DSRGNIEKFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKT 953

Query: 680  AFLNGSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQ 501
            AFLNG L+E++YM QP GF+ KG E+  C+LK+SI+GLKQASR W +KFD  +K +GF +
Sbjct: 954  AFLNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQE 1013

Query: 500  NLDEPCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKYWLAQQFDMKDLGEASYVLG 321
            N+++ C+Y K K+ +  FL+LYVDDILL  +D+ +L   K +L+  FDMKDLGEASYVLG
Sbjct: 1014 NVEDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLG 1073

Query: 320  IRIFRDRKNKRIALSQALYIDNILERFAMQNSKKGQTPFRHG 195
            I I RDR    + LSQ  YI+ +L++F M        P   G
Sbjct: 1074 IEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKG 1115



 Score = 78.6 bits (192), Expect(2) = e-128
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -3

Query: 172  CPKTPSEVEYMKKVPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGPEHWIVVK 2
            CP+   E+  MK  PYASAVGSL YA +CTRPD+ +  G++ R+QSNPG EHW +VK
Sbjct: 1123 CPRNQFELNEMKTKPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLVK 1179