BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00041720
         (2041 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   154   4e-88
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   154   8e-88
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   156   2e-60
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   156   2e-60
emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]   149   2e-58
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   154   8e-58
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo...   149   2e-57
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   149   4e-57
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   144   5e-57
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]   144   5e-57
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   144   8e-57
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   135   2e-56
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   149   2e-55
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo...   144   2e-55
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  134   2e-55
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   138   3e-55
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   136   4e-55
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   146   5e-55
gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposo...   141   2e-54
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   136   2e-54

>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  154 bits (389), Expect(4) = 4e-88
 Identities = 78/170 (45%), Positives = 104/170 (61%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+   + VK   N  NIPF                   L   LSN+   +PF++IH DLW
Sbjct: 504  GHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLW 563

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P  S  GYS Y++FVD  T++TW+  LKAKSD L AF +FK  I+ QF  +IK + S
Sbjct: 564  GPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQS 623

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLIN 1286
            D GGEF+A T  LN+ GI HR +CP+T  QNG  +RKHR+I E+GL+L++
Sbjct: 624  DWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLS 673



 Score =  104 bits (260), Expect(4) = 4e-88
 Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPL-LFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVF 1108
            VYLINR PS  + LF++ + AL   + D   ++VFGCLC+P+ RPYN HKL+YRS P V+
Sbjct: 690  VYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQYRSSPCVY 749

Query: 1107 LGYSP*HKGYKILLPNNRVIITRHLVFDETQLPFL 1003
            LG SP HKG+K L    R+ I++ ++F E+Q P+L
Sbjct: 750  LGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYL 784



 Score = 95.9 bits (237), Expect(4) = 4e-88
 Identities = 91/293 (31%), Positives = 127/293 (43%), Gaps = 27/293 (9%)
 Frame = -3

Query: 950  NSHITSPLPLIQISFPLIEPNTN----SLSTPDTCIDNQXXXXXXXXXXXXXXXXXHQYV 783
            NSH++   P  QI FP +  NTN    + S PDT   +                      
Sbjct: 793  NSHMSHTYPA-QILFPSVNTNTNLHPETSSAPDTDPPDPVSPLPGSVSPSS--------- 842

Query: 782  PHSLDISLEEGGQLYVDLPIRVNDQTSSVSTNALSQLVTSSVAGHTCTHH----MVTMSK 615
              S  +++ +   L +  PI     + SV T     +     A    +HH    M+T +K
Sbjct: 843  --STPLTISQINSL-ISQPISTT--SPSVPTPPADPVPAIRPASQNISHHNAHPMITRAK 897

Query: 614  SGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLI 435
            +G +KPKV    V  L+  + V+ AL+ P W QAM  EY+AL  N TWTL PLPQ+++ I
Sbjct: 898  TGNLKPKV---FVAALEPKS-VKSALNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAI 953

Query: 434  GCRWI-------------------DKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISI 312
            GC+WI                    KG+ QT GFD+TET     K    +   T  +   
Sbjct: 954  GCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRIILTLAVTFK 1013

Query: 311  MEY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
                 +     F     ++       +GF ++    KSLVCKL KSLY LKQA
Sbjct: 1014 WSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKLHKSLYGLKQA 1063



 Score = 43.5 bits (101), Expect(4) = 4e-88
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  +   ALL LGF  +K D SL       +C  +L YVDDI+IT +
Sbjct: 1065 RAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGS 1113


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  154 bits (389), Expect(4) = 8e-88
 Identities = 78/170 (45%), Positives = 104/170 (61%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+   + VK   N  NIPF                   L   LSN+   +PF++IH DLW
Sbjct: 504  GHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLW 563

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P  S  GYS Y++FVD  T++TW+  LKAKSD L AF +FK  I+ QF  +IK + S
Sbjct: 564  GPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQS 623

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLIN 1286
            D GGEF+A T  LN+ GI HR +CP+T  QNG  +RKHR+I E+GL+L++
Sbjct: 624  DWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLS 673



 Score =  103 bits (257), Expect(4) = 8e-88
 Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPL-LFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVF 1108
            VYLINR PS  + LF++ + AL   + D   ++VFGCLC+P+ RPYN HKL+Y+S P V+
Sbjct: 690  VYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQYKSSPCVY 749

Query: 1107 LGYSP*HKGYKILLPNNRVIITRHLVFDETQLPFL 1003
            LG SP HKG+K L    R+ I++ ++F E+Q P+L
Sbjct: 750  LGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYL 784



 Score = 95.9 bits (237), Expect(4) = 8e-88
 Identities = 91/293 (31%), Positives = 127/293 (43%), Gaps = 27/293 (9%)
 Frame = -3

Query: 950  NSHITSPLPLIQISFPLIEPNTN----SLSTPDTCIDNQXXXXXXXXXXXXXXXXXHQYV 783
            NSH++   P  QI FP +  NTN    + S PDT   +                      
Sbjct: 793  NSHMSHTYPA-QILFPSVNTNTNLHPETSSAPDTDPPDPVSPLPGSVSPSS--------- 842

Query: 782  PHSLDISLEEGGQLYVDLPIRVNDQTSSVSTNALSQLVTSSVAGHTCTHH----MVTMSK 615
              S  +++ +   L +  PI     + SV T     +     A    +HH    M+T +K
Sbjct: 843  --STPLTISQINSL-ISQPISTT--SPSVPTPPADPVPAIRPASQNISHHNAHPMITRAK 897

Query: 614  SGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLI 435
            +G +KPKV    V  L+  + V+ AL+ P W QAM  EY+AL  N TWTL PLPQ+++ I
Sbjct: 898  TGNLKPKV---FVAALEPKS-VKSALNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAI 953

Query: 434  GCRWI-------------------DKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISI 312
            GC+WI                    KG+ QT GFD+TET     K    +   T  +   
Sbjct: 954  GCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRIILTLAVTFK 1013

Query: 311  MEY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
                 +     F     ++       +GF ++    KSLVCKL KSLY LKQA
Sbjct: 1014 WSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKLHKSLYGLKQA 1063



 Score = 43.5 bits (101), Expect(4) = 8e-88
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  +   ALL LGF  +K D SL       +C  +L YVDDI+IT +
Sbjct: 1065 RAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGS 1113


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  156 bits (394), Expect(2) = 2e-60
 Identities = 74/169 (43%), Positives = 107/169 (63%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  V+K    ++NI  + N K              LP  LS +    PFDL++SDLW
Sbjct: 506  GHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLW 565

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P+ S  GY  YV+FVD  TR+TW+ LLK+K+ T   F +F   ++ Q+H  IK + +
Sbjct: 566  GPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQT 625

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGE+++ T YLN+ GI HR  CP+T  QNG+A+RKHR+I E+GL+L+
Sbjct: 626  DWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLM 674



 Score =  107 bits (266), Expect(2) = 2e-60
 Identities = 50/95 (52%), Positives = 65/95 (68%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     +  L  Q  D L LR+FGC C+P+ RPYNKHKL++RSQ  VFL
Sbjct: 692  VYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFL 751

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPFLD 1000
            GYS  HKGYK L  + R+ I++ +VF+ET+ P+ D
Sbjct: 752  GYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKD 786



 Score = 84.7 bits (208), Expect(2) = 3e-21
 Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
 Frame = -3

Query: 707  TSSVSTNALSQLVTSSVAGHTCTHHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVP 528
            T S+ T++  +  +S +      H M T +K GIVKP++  + +    E    ++ALS P
Sbjct: 847  TLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNP 906

Query: 527  EWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRW-------------------IDKGYT 405
             W  AM  EY AL  N+TW+L PLP ++  IGC+W                   + KG+ 
Sbjct: 907  TWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFN 966

Query: 404  QTLGFDYTETL*SHNKANHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TLHGTTSGF 225
            Q  GFDY ET     K    +   T  L        +     F      +        GF
Sbjct: 967  QQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGF 1026

Query: 224  CSATF*IKSLVCKLKKSLYSLKQA 153
             ++    K+LVCKL K++Y LKQA
Sbjct: 1027 EASD---KNLVCKLHKAIYGLKQA 1047



 Score = 47.4 bits (111), Expect(2) = 3e-21
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  K  S LL L F A+K D SL     G + I IL YVDDI+IT N
Sbjct: 1049 RAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGN 1097


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  156 bits (394), Expect(2) = 2e-60
 Identities = 74/169 (43%), Positives = 107/169 (63%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  V+K    ++NI  + N K              LP  LS +    PFDL++SDLW
Sbjct: 171  GHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLW 230

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P+ S  GY  YV+FVD  TR+TW+ LLK+K+ T   F +F   ++ Q+H  IK + +
Sbjct: 231  GPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQT 290

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGE+++ T YLN+ GI HR  CP+T  QNG+A+RKHR+I E+GL+L+
Sbjct: 291  DWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLM 339



 Score =  107 bits (266), Expect(2) = 2e-60
 Identities = 50/95 (52%), Positives = 65/95 (68%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     +  L  Q  D L LR+FGC C+P+ RPYNKHKL++RSQ  VFL
Sbjct: 357  VYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFL 416

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPFLD 1000
            GYS  HKGYK L  + R+ I++ +VF+ET+ P+ D
Sbjct: 417  GYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKD 451



 Score = 84.7 bits (208), Expect(2) = 3e-21
 Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
 Frame = -3

Query: 707  TSSVSTNALSQLVTSSVAGHTCTHHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVP 528
            T S+ T++  +  +S +      H M T +K GIVKP++  + +    E    ++ALS P
Sbjct: 512  TLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNP 571

Query: 527  EWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRW-------------------IDKGYT 405
             W  AM  EY AL  N+TW+L PLP ++  IGC+W                   + KG+ 
Sbjct: 572  TWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFN 631

Query: 404  QTLGFDYTETL*SHNKANHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TLHGTTSGF 225
            Q  GFDY ET     K    +   T  L        +     F      +        GF
Sbjct: 632  QQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGF 691

Query: 224  CSATF*IKSLVCKLKKSLYSLKQA 153
             ++    K+LVCKL K++Y LKQA
Sbjct: 692  EASD---KNLVCKLHKAIYGLKQA 712



 Score = 47.4 bits (111), Expect(2) = 3e-21
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = -2

Query: 150 RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
           RAW  K  S LL L F A+K D SL     G + I IL YVDDI+IT N
Sbjct: 714 RAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGN 762


>emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]
          Length = 828

 Score =  149 bits (375), Expect(3) = 2e-58
 Identities = 78/179 (43%), Positives = 112/179 (62%), Gaps = 4/179 (2%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENE--KQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSD 1622
            G+P+  ++ +A  S N PF++ +  K              LP++LS+SH   P  LIH+D
Sbjct: 388  GHPAAPILSKALASCN-PFVKLQINKIAPCIICPLAKSHSLPYSLSSSHVSHPLALIHTD 446

Query: 1621 LWGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM 1442
            LWGP+P  S++G   ++ F+DD +R+TW+  L  K   L +F+ F+  IE Q H TIK +
Sbjct: 447  LWGPAPSISITGARYFLIFIDDYSRHTWIYFLSTKDQVLHSFITFRKMIENQLHTTIKCI 506

Query: 1441 *SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
             SD GGEF A   YL  +GILH+FSCP+TPQQNG A+RK R++ E GL+L+  + LP K
Sbjct: 507  QSDNGGEFLAFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSK 565



 Score = 94.4 bits (233), Expect(3) = 2e-58
 Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLIN  P+K L F++  +AL  +  +  HLRVFGCLC+P  RPY +HKL YRS   VFL
Sbjct: 575  VYLINLLPAKLLHFQSPIQALFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFL 634

Query: 1104 GYSP*HKGYKIL-LPNNRVIITRHLVFDETQLPF 1006
            GY+P H GY  L +  +R+ I+R+++F E+  PF
Sbjct: 635  GYAPAHNGYLCLDVSTSRIYISRNVIFHESYFPF 668



 Score = 34.3 bits (77), Expect(3) = 2e-58
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFNFSS-PKSFTMKSSGPD 1882
            KD+ T  +LL+G L++GLY F+ SS P++F   SS  D
Sbjct: 342  KDQVTKKILLKGWLRDGLYEFSSSSPPRAFVTTSSFSD 379



 Score = 60.1 bits (144), Expect = 9e-06
 Identities = 32/76 (42%), Positives = 43/76 (56%)
 Frame = -3

Query: 641 THHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLC 462
           TH MVT +KSGI K +     V+   E     +A     W QAM  EY+AL +N+TW+L 
Sbjct: 737 THPMVTRAKSGIHKKR--SFIVQHTTEPRTYSQASKNDSWVQAMNREYQALLRNNTWSLV 794

Query: 461 PLPQNKQLIGCRWIDK 414
             P +  ++GCRWI K
Sbjct: 795 TPPSSAHIVGCRWIYK 810


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  154 bits (388), Expect(3) = 8e-58
 Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+PS A +K   +  N+  I                   PF+LS++   +P +LIH DLW
Sbjct: 529  GHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDLW 588

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+ + S SGY  Y+ FVD  +R++W+ LL+ KS+ +  FV FKT +E QF   IK + +
Sbjct: 589  GPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQT 648

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLIN--SLPDK 1271
            D GGEF+A   YL +NGI+HR SCP+T QQNG+A+RKHR I E GL+L++  SLP K
Sbjct: 649  DWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLK 705



 Score = 95.1 bits (235), Expect(3) = 8e-58
 Identities = 46/94 (48%), Positives = 58/94 (61%)
 Frame = -2

Query: 1287 IVYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVF 1108
            +VYL NR P+  L  K   E L     D   L+VFGC C+P  RPYN HKL+YRS+   F
Sbjct: 714  VVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTF 773

Query: 1107 LGYSP*HKGYKILLPNNRVIITRHLVFDETQLPF 1006
            LGYS  HKGYK +  N RV I+  ++F+ET  P+
Sbjct: 774  LGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPY 807



 Score = 26.6 bits (57), Expect(3) = 8e-58
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFNFSSPKSFTMKSSGPDHRHNFGSVSINSAVVKDRINLDV 1813
            KD+ T  VL+ G +++GLY+F+ S       +S          S S            D+
Sbjct: 464  KDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSLSSTFDL 523

Query: 1812 WH 1807
            WH
Sbjct: 524  WH 525



 Score = 99.0 bits (245), Expect(2) = 6e-23
 Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
 Frame = -3

Query: 788  YVPHSLDISLEEGGQLYVDLPIRVNDQTSSVSTNALSQLVTSSVAGHTCTHHMVTMSKSG 609
            + P+S D +L     +   +   V    SS++  ++++ +         TH M+T +KSG
Sbjct: 867  HAPNSADTTLTPAQVVSNPVATPVQHVVSSIADASVTRTIAKDADN---THPMITRAKSG 923

Query: 608  IVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGC 429
            IVKPK+    +  + E + V  AL   EWK+AM  EY+AL +N+TW+L PLP  +Q IGC
Sbjct: 924  IVKPKI---FIAAIREPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGC 980

Query: 428  RW-------------------IDKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISIME 306
            +W                   + KG+ Q  GFD+TET     K +  +   T  L     
Sbjct: 981  KWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWA 1040

Query: 305  Y*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
               +     F     ++        GF        +LVC+L K+LY LKQA
Sbjct: 1041 IKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQ--NPNLVCRLHKALYGLKQA 1089



 Score = 38.9 bits (89), Expect(2) = 6e-23
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVI 13
            RAW  K   ALL  GF +AK D SL  R        +L YVDDI++
Sbjct: 1091 RAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILV 1136


>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1085

 Score =  149 bits (376), Expect(2) = 2e-57
 Identities = 72/169 (42%), Positives = 102/169 (60%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  V+K    +FNI  + N K              LP  LS      PFDL+++DLW
Sbjct: 378  GHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTPFDLVYNDLW 437

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P+ S  GY  YV+FVD  TR+TW+ LLK K+ T   F +F   +  Q+H  IK + +
Sbjct: 438  GPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQYHHPIKALQT 497

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGE+++ T YLN+ GI HR  C +T  QNG+ +RKHR+I E+GL+L+
Sbjct: 498  DWGGEYRSFTNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLTLL 546



 Score =  104 bits (259), Expect(2) = 2e-57
 Identities = 49/93 (52%), Positives = 63/93 (67%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     +  L  Q  D L LR+FGC C+P+ RPYNKHKL++RSQ  VFL
Sbjct: 564  VYLINRLPSSSIQNVVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFL 623

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPF 1006
            GYS  HKGYK L  + R+ I+  +VF+ET+ P+
Sbjct: 624  GYSTSHKGYKCLAADERLYISNDVVFNETKFPY 656



 Score = 73.6 bits (179), Expect = 7e-10
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = -1

Query: 370 SPIIKPTTIRIVLRIALSQSWNIRQLDVANAFLNGDLETELYMEQPPGF 224
           SP+IKP T+R++L +AL+  W I+QLDV NAFLNG LE E+YM QPPGF
Sbjct: 778 SPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMTQPPGF 826


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  149 bits (375), Expect(2) = 4e-57
 Identities = 75/169 (44%), Positives = 102/169 (60%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P   V+K  F   N P I                  LP   S +  + PF+LI+SDLW
Sbjct: 410  GHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFELIYSDLW 469

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+PI S +GY  YV+FVD  TR+TW+ LLK K+ TL  F +F   I+ QF   IK + +
Sbjct: 470  GPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKAIQT 529

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGEF++ T YL +NGI HR  CP+T  QNG+ +RKHR+I E+GL+++
Sbjct: 530  DWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELGLTML 578



 Score =  103 bits (256), Expect(2) = 4e-57
 Identities = 49/93 (52%), Positives = 62/93 (66%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     F  L  Q  D   LR+FGC C+P+ RPYNK+KL++RSQ  VFL
Sbjct: 596  VYLINRLPSSSIQNDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRSQECVFL 655

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPF 1006
            GYS  HKGYK L P  R+ I++ +VF ET+ P+
Sbjct: 656  GYSTSHKGYKCLAPTGRIFISKDVVFCETRFPY 688


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  144 bits (362), Expect(3) = 5e-57
 Identities = 74/178 (41%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPF-IENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDL 1619
            G+P+  ++ +A  S N    ++  K              LP++LS+SH   P  LIH+DL
Sbjct: 485  GHPAVPILSKALASCNPSVTLQINKIAPCIICPLAKSHSLPYSLSSSHASHPLALIHTDL 544

Query: 1618 WGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM* 1439
            WGP+P  S++G   ++ F+DD +R+TW+  L  K   L +F+ F+  +E Q   TIK + 
Sbjct: 545  WGPAPSTSITGARYFLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQ 604

Query: 1438 SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            SD GGEF A   YL  +GILH+FSCP+TPQQNG A+RK R++ E GL+L+  + LP K
Sbjct: 605  SDNGGEFLAFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSK 662



 Score = 96.3 bits (238), Expect(3) = 5e-57
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLIN  P+K L F++  + L  +  +  HLRVFGCLC+P  RPY +HKL YRS   VFL
Sbjct: 672  VYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFL 731

Query: 1104 GYSP*HKGYKIL-LPNNRVIITRHLVFDETQLPF 1006
            GY+P HKGY  L +  NR+ I+R+++F E+  PF
Sbjct: 732  GYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPF 765



 Score = 32.7 bits (73), Expect(3) = 5e-57
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFNFSS-PKSFTMKSSGPD 1882
            KD+ T  +LL+G L++GLY F+ SS P++F    S  D
Sbjct: 439  KDQVTKKILLKGWLRDGLYEFSSSSPPRAFVTTGSFSD 476



 Score = 75.5 bits (184), Expect(2) = 1e-17
 Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
 Frame = -3

Query: 641  THHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLC 462
            TH MVT +KSGI K +     V+   E     +A     W QAM  EY+AL +N+TW+L 
Sbjct: 834  THPMVTRAKSGIHKKR--SFIVQHTTEPRTYSQASKNDSWVQAMNSEYQALLRNNTWSLV 891

Query: 461  PLPQNKQLIGCRWIDK-------------------GYTQTLGFDYTETL*SHNKANHHQN 339
            P P +  ++GCRWI K                   G+TQT G DY +T     K      
Sbjct: 892  PPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKP----- 946

Query: 338  CSTHCLISI-----MEY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSLVCKLKKS 174
            C+   ++++          +     F      +        GF + T+   + VCKL K+
Sbjct: 947  CTIRLILALAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTY--PTYVCKLHKA 1004

Query: 173  LYSLKQA 153
            LY LKQA
Sbjct: 1005 LYGLKQA 1011



 Score = 44.3 bits (103), Expect(2) = 1e-17
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  K   ALL  GF +++ D SL   H     +++L YVDDI++T +
Sbjct: 1013 RAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGS 1061


>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
          Length = 1334

 Score =  144 bits (362), Expect(3) = 5e-57
 Identities = 74/178 (41%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPF-IENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDL 1619
            G+P+  ++ +A  S N    ++  K              LP++LS+SH   P  LIH+DL
Sbjct: 485  GHPAVPILSKALASCNPSVTLQINKIAPCIICPLAKSHSLPYSLSSSHASHPLALIHTDL 544

Query: 1618 WGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM* 1439
            WGP+P  S++G   ++ F+DD +R+TW+  L  K   L +F+ F+  +E Q   TIK + 
Sbjct: 545  WGPAPSTSITGARYFLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQ 604

Query: 1438 SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            SD GGEF A   YL  +GILH+FSCP+TPQQNG A+RK R++ E GL+L+  + LP K
Sbjct: 605  SDNGGEFLAFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSK 662



 Score = 96.3 bits (238), Expect(3) = 5e-57
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLIN  P+K L F++  + L  +  +  HLRVFGCLC+P  RPY +HKL YRS   VFL
Sbjct: 672  VYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFL 731

Query: 1104 GYSP*HKGYKIL-LPNNRVIITRHLVFDETQLPF 1006
            GY+P HKGY  L +  NR+ I+R+++F E+  PF
Sbjct: 732  GYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPF 765



 Score = 32.7 bits (73), Expect(3) = 5e-57
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFNFSS-PKSFTMKSSGPD 1882
            KD+ T  +LL+G L++GLY F+ SS P++F    S  D
Sbjct: 439  KDQVTKKILLKGWLRDGLYEFSSSSPPRAFVTTGSFSD 476



 Score = 78.2 bits (191), Expect(2) = 2e-18
 Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
 Frame = -3

Query: 641  THHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLC 462
            TH MVT +KSGI K +     V+   E     +A     W QAM  EY+AL +N+TW+L 
Sbjct: 834  THPMVTRAKSGIHKKR--SFIVQHTTEPRTYSQAXKNDSWVQAMNSEYQALLRNNTWSLV 891

Query: 461  PLPQNKQLIGCRWIDK-------------------GYTQTLGFDYTETL*SHNKANHHQN 339
            P P +  ++GCRWI K                   G+TQT G DY +T     K      
Sbjct: 892  PPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKP----- 946

Query: 338  CSTHCLISIMEY*TVRCCQCFSQWGFRD*TLHGTT-----SGFCSATF*IKSLVCKLKKS 174
            C+   ++++         Q   + GF +  L          GF + T+   + VCKL K+
Sbjct: 947  CTIRLILALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTY--PTYVCKLHKA 1004

Query: 173  LYSLKQA 153
            LY LKQA
Sbjct: 1005 LYGLKQA 1011



 Score = 44.3 bits (103), Expect(2) = 2e-18
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  K   ALL  GF +++ D SL   H     +++L YVDDI++T +
Sbjct: 1013 RAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGS 1061


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  144 bits (362), Expect(2) = 8e-57
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+PS  +V    N  N+P +                    F  S S   +P +LIH+DLW
Sbjct: 512  GHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLW 571

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+   S  G+  Y+ F+D  +R+TW+ +LK KS+    F+ FK+ +E Q    IK + S
Sbjct: 572  GPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQS 631

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            D GGE+++ T YL  NGI+HR SCPYT +QNGLA+RKHR+I E G++L+   SLP K
Sbjct: 632  DWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFK 688



 Score =  107 bits (267), Expect(2) = 8e-57
 Identities = 51/100 (51%), Positives = 66/100 (66%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR P+  L  K+  E L  QK     L+VFGC+CYP  RP+N HKL++RS P  FL
Sbjct: 698  VYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFL 757

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPFLDRKSKQ 985
            GYS  HKGYK L PN  ++I+R ++FDE   PF   +S++
Sbjct: 758  GYSLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQK 797



 Score = 88.2 bits (217), Expect(2) = 2e-20
 Identities = 68/198 (34%), Positives = 86/198 (43%), Gaps = 19/198 (9%)
 Frame = -3

Query: 689  NALSQLVTSSVAGHTCTHHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAM 510
            N  SQ   SS      +HHM+T SK GI KPK       +    T V EAL +  WKQAM
Sbjct: 845  NVASQXPPSSAPPFP-SHHMITRSKXGIFKPKA----YLISTTPTSVPEALQLSHWKQAM 899

Query: 509  TYEYEALPKNDTWTLCPLPQNKQLIGCRW-------------------IDKGYTQTLGFD 387
            T EY AL +N+TW L P P +++LIGC+W                   + KG+ Q  GFD
Sbjct: 900  TDEYLALLRNNTWDLVPPPTDRKLIGCKWVFKVKENXDGTINKYKARLVAKGFHQIAGFD 959

Query: 386  YTETL*SHNKANHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF* 207
            + ET     K    +   T  L    +   +     F      +        GF      
Sbjct: 960  FNETFSPVVKPTTIRIVLTIALNLQWKVRQLDVNNAFLNGDLHEDIFMHQPQGFIDPV-- 1017

Query: 206  IKSLVCKLKKSLYSLKQA 153
              + VCKL KSLY LKQA
Sbjct: 1018 NPNYVCKLNKSLYGLKQA 1035



 Score = 41.2 bits (95), Expect(2) = 2e-20
 Identities = 24/49 (48%), Positives = 26/49 (53%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  K   AL  LGFS+ K D SL           IL YVDDI+IT N
Sbjct: 1037 RAWFEKLHQALGILGFSSTKSDQSLFINITPTHSTYILVYVDDILITGN 1085


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  135 bits (341), Expect(3) = 2e-56
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  ++K    S NI   +  K              LPF +  S    P  L+H+DLW
Sbjct: 527  GHPADNILKHILTSCNISH-QCHKNNVCCACQFAKSHKLPFNVXVSRASHPLALLHADLW 585

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP  I S +G   ++ FVDD +R++W+  L +K   L  F++FK+ +E QF+  I+ + S
Sbjct: 586  GPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQALSVFIKFKSLVENQFNSRIQCLRS 645

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            D GGEFKA + YL  +GI  +FSCPYTP+QNG A+RK R+I E GL+L+   SLP K
Sbjct: 646  DNGGEFKAFSSYLATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFK 702



 Score =  105 bits (261), Expect(3) = 2e-56
 Identities = 50/94 (53%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            ++LINR P+K L +++ F+ L G+  +    ++FGCLCYPY RPYNK+KL YRS   VFL
Sbjct: 712  IFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFL 771

Query: 1104 GYSP*HKGYKILLP-NNRVIITRHLVFDETQLPF 1006
            GYS  HKGY  L P   R+ +TRH+VF ET  PF
Sbjct: 772  GYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPF 805



 Score = 30.0 bits (66), Expect(3) = 2e-56
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFN---FSSPKSFTMKS 1894
            KD+ T  +LLQG+L++GLY F      SP +F   S
Sbjct: 471  KDQVTKKILLQGSLEHGLYRFPARFVPSPAAFVSSS 506



 Score = 74.3 bits (181), Expect(2) = 8e-13
 Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 24/142 (16%)
 Frame = -3

Query: 728  PIRVNDQTSSVSTNALSQL----VTSSVAGHTCTHHMVTMSKSGIVKPKV*-KSHVEVLD 564
            P   N  +S++S   L Q+    +++S    T  H MVT +K+GI K KV   SH+    
Sbjct: 845  PPLTNMPSSTISLPDLIQVPFADISTSEPHPTNQHPMVTRAKNGISKKKVYFSSHIS--- 901

Query: 563  EHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRWIDK---------- 414
            E T   +A+    W  AM  E+ AL +N+TW L P P N  +IGC+W+ K          
Sbjct: 902  EPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVD 961

Query: 413  ---------GYTQTLGFDYTET 375
                     G+TQTLG DY ET
Sbjct: 962  RYKARLVAQGFTQTLGLDYFET 983



 Score = 29.3 bits (64), Expect(2) = 8e-13
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 370  SPIIKPTTIRIVLRIALSQSW 308
            SP++K + IRI+L +ALS +W
Sbjct: 985  SPVVKASXIRIILAVALSFNW 1005


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  149 bits (377), Expect(2) = 2e-55
 Identities = 78/169 (46%), Positives = 103/169 (60%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  V+       NI     E               LPF  S S   +P DL+HSD+W
Sbjct: 372  GHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVW 431

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+PI SVSG+  YV F+DD +R+TW+  LK KSD   AF++F+  +E QF+K IK +  
Sbjct: 432  GPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQC 491

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            DGGGEFK+L+  L K GI  R SCPYT  QNG A+RKHR++ E GL+L+
Sbjct: 492  DGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLL 540



 Score = 97.1 bits (240), Expect(2) = 2e-55
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            V+LINR P++ +  K+ ++ L  +  D   ++ FGC CYP  +PYN+HKL++ +   VFL
Sbjct: 558  VFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTTKCVFL 617

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPFLD-----RKSKQV--DPTQT*F 961
            GYS  HKGYK L    R+ I+RH+VF+E   PF D     RK  ++  DPT   F
Sbjct: 618  GYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPFHDGFLNTRKPAEIITDPTSLLF 672



 Score = 82.4 bits (202), Expect(2) = 5e-17
 Identities = 67/190 (35%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
 Frame = -3

Query: 638  HHMVTMSKSGIVKPKV*KSHV----EVLDEHTP--VQEALSVPEWKQAMTYEYEALPKND 477
            H M T SK GI+KPK  K +V    + L+E  P    EAL  PEWK+AM  E++AL  N 
Sbjct: 737  HQMTTRSKMGIIKPK--KPYVGAVEKTLEEQEPETTYEALENPEWKKAMIAEFKALMMNK 794

Query: 476  TWTLCPLPQNKQLIGCRW-------------------IDKGYTQTLGFDYTETL*SHNKA 354
            TWTL P    K +I C+W                   + KG+ QTLG DY ET     KA
Sbjct: 795  TWTLVPYQGQKNIIDCKWVFKTKYKADGTIERRKARLVAKGFQQTLGLDYDETFSPVIKA 854

Query: 353  NHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSL---VCKL 183
                  +   ++SI  +      Q      F +  L  T        F  KS    +CKL
Sbjct: 855  -----ITVRIILSIAVHFNWEIRQMDINNAFLNGELKETVFMRQPEGFLDKSRPQHICKL 909

Query: 182  KKSLYSLKQA 153
             K++Y LKQA
Sbjct: 910  TKAIYGLKQA 919



 Score = 35.4 bits (80), Expect(2) = 5e-17
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            R+W  +  +ALL  GF   + D+SL           +L YVDDI+IT +
Sbjct: 921  RSWYDRLRNALLKWGFKNTRSDSSLFVLMSKAHITFLLIYVDDIIITGS 969


>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  144 bits (364), Expect(2) = 2e-55
 Identities = 73/169 (43%), Positives = 101/169 (59%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P   V+K  F   N P I                  LP  LS +  + PF+LI+SDLW
Sbjct: 46   GHPHNDVMKSMFRLCNFPIINKTVSDFCTPCRLGKSHKLPSTLSKTVYHTPFELIYSDLW 105

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
             P+PI S +GY  YV+FVD  TR+ W+ L K+K+ TL  F +F   I+ QF   IK + +
Sbjct: 106  RPAPITSDNGYQYYVTFVDAHTRFIWIFLFKSKAHTLDVFKQFHAMIQNQFQLPIKAIQT 165

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGEF++ T YL +NGI HR  CP+T  QNG+ +RKHR+I E+GL+++
Sbjct: 166  DWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGIVERKHRHIVELGLTML 214



 Score =  102 bits (253), Expect(2) = 2e-55
 Identities = 48/93 (51%), Positives = 61/93 (65%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     F  L  Q  D   LR+FGC C+P+ RPYNK+KL+ RSQ  VFL
Sbjct: 232  VYLINRLPSSSIQHDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQLRSQECVFL 291

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPF 1006
            GYS  HKGYK L P  R+ I++ ++F ET+ P+
Sbjct: 292  GYSTSHKGYKCLAPTGRIFISKDVIFCETRFPY 324



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
 Frame = -3

Query: 707 TSSVSTNALSQLVTSSVAGHTCT-----HHMVTMSKSGIVKPKV*KSHVEVLDEHTPVQE 543
           TSSVS + L    ++S++ H  T     H M T +K+GIVKP +  + +    E    ++
Sbjct: 381 TSSVSASTLLPTSSTSLSTHDTTPITNIHSMTTRAKAGIVKPCLQPTLLLTHTEPKSTKQ 440

Query: 542 ALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRW-------------------I 420
           AL+   W  AM  EY AL  N TWTL  LP NK  IGC+W                   +
Sbjct: 441 ALANDTWLAAMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENSDGTVNKYKARLV 500

Query: 419 DKGYTQTLGFDYTET 375
            KG+ +  G DY ET
Sbjct: 501 AKGFHKQFGSDYNET 515


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  134 bits (338), Expect(3) = 2e-55
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPF-IENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDL 1619
            G+PS  +VK+  +  N+P  +E+  Q             LP+  S S +  P +L+ SD+
Sbjct: 463  GHPSLPIVKQVISKNNLPCSVESVNQSVCNACQEAKSRQLPYVRSTSVSQFPLELVFSDV 522

Query: 1618 WGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM* 1439
            WGP+P +SV     YVSF+DD +++TW+ LLK KS+    F  F+  +E  F + I  M 
Sbjct: 523  WGPAP-ESVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQ 581

Query: 1438 SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLIN--SLPDK 1271
            +D GGE++ L  +  K GI H  SCP+T QQNG A+RKHR+I EVGLSL++  S+P K
Sbjct: 582  TDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLK 639



 Score =  103 bits (258), Expect(3) = 2e-55
 Identities = 52/93 (55%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1281 YLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFLG 1102
            YLINR PSK +   T  E L  QK D L LRVFGC C+P+ RPYN HKL++RS+  VFLG
Sbjct: 650  YLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLG 709

Query: 1101 YSP*HKGYKIL-LPNNRVIITRHLVFDETQLPF 1006
            +S  HKG+K L + + RV I+R +VFDE   PF
Sbjct: 710  FSTHHKGFKCLDVSSGRVYISRDVVFDENIFPF 742



 Score = 28.9 bits (63), Expect(3) = 2e-55
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 2001 YGSKDRCTWNVLLQGALKNGLYSFNFSSPKSFTMKSSGPDHRHNFGSVSINSAVVKDRIN 1822
            +  KD+ T ++LL+G  ++GLY      PKS             FG  +   A+   +++
Sbjct: 412  FSIKDQVTKDILLEGRCRHGLYPI----PKS-------------FGRTTSKQALGTTKLS 454

Query: 1821 LDVWH 1807
            L  WH
Sbjct: 455  LSRWH 459



 Score = 73.9 bits (180), Expect(2) = 8e-18
 Identities = 35/57 (61%), Positives = 46/57 (80%)
 Frame = -1

Query: 370  SPIIKPTTIRIVLRIALSQSWNIRQLDVANAFLNGDLETELYMEQPPGFVQQHSKLN 200
            SP++K  TIRI+L IA+S+ W++RQLDV NAFL+G LE E+YM+QPPGF +  SK N
Sbjct: 1010 SPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGF-ESFSKPN 1065



 Score = 46.6 bits (109), Expect(2) = 8e-18
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  + +  L+ LGF A+K D SL F + G   + +L YVDDI+I S+
Sbjct: 1082 RAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASS 1130



 Score = 63.2 bits (152), Expect = 1e-06
 Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
 Frame = -3

Query: 548  QEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRW------------------ 423
            +EAL    WK AM  EY+AL KNDTW L P  + + +IGC+W                  
Sbjct: 932  KEALGDKNWKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKAR 991

Query: 422  -IDKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TL 246
             + KG+ Q  G DY +T     KA      +   ++SI     V       Q   ++  L
Sbjct: 992  LVAKGFKQRYGIDYEDTFSPVVKA-----ATIRIILSI----AVSRGWSLRQLDVQNAFL 1042

Query: 245  HG---------TTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
            HG            GF   +F   + VCKL K+LY LKQA
Sbjct: 1043 HGFLEEEVYMQQPPGF--ESFSKPNYVCKLDKALYGLKQA 1080


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  138 bits (347), Expect(2) = 3e-55
 Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIE-NEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDL 1619
            G+PS+ VV++   S N+P ++ +E+              L F  S S +  P +L+ SD+
Sbjct: 461  GHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSDV 520

Query: 1618 WGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM* 1439
            WGP+P +SV     YVSF+DD +++TW+ LLK KS+    F  F++ +E  F++ I  M 
Sbjct: 521  WGPAP-QSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAMQ 579

Query: 1438 SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            +D GGE++ L  + NK GI H  SCP+T QQNG A+RKHR+I EVGL+L+  +S+P K
Sbjct: 580  TDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLK 637



 Score =  107 bits (268), Expect(2) = 3e-55
 Identities = 56/94 (59%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINRTPS+ L   +  E L G K D   LRVFGC C+P  RPYNKHKL++RS    FL
Sbjct: 647  VYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFL 706

Query: 1104 GYSP*HKGYKILLPN-NRVIITRHLVFDETQLPF 1006
            GYS  HKG+K L P+  RV I+R +VFDETQ PF
Sbjct: 707  GYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPF 740



 Score = 70.5 bits (171), Expect(2) = 5e-16
 Identities = 31/49 (63%), Positives = 41/49 (83%)
 Frame = -1

Query: 370  SPIIKPTTIRIVLRIALSQSWNIRQLDVANAFLNGDLETELYMEQPPGF 224
            SP++K  TIRI+L IA+S+ W +RQLDV NAFL+G LE E+YM+QPPG+
Sbjct: 1005 SPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGY 1053



 Score = 43.9 bits (102), Expect(2) = 5e-16
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSNQ 1
            RAW  + +  L  LGF  +K D SL F + G   I +L YVDDI++ S++
Sbjct: 1077 RAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSR 1126


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  136 bits (343), Expect(3) = 4e-55
 Identities = 73/178 (41%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFI-ENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDL 1619
            G+P+  +V++  +  N+P + E+ KQ             LP++ S+S +  P +LI+SD+
Sbjct: 463  GHPASPIVEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDV 522

Query: 1618 WGPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM* 1439
            WGP+ + SV G   YVSF+ D +++TWL L+K KS+ +  F  F+  +E  F++ I  M 
Sbjct: 523  WGPA-LTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQ 581

Query: 1438 SDGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI--NSLPDK 1271
            SD GGE++ L  +  K GI H  SCP+T QQNG A+RKHR+I EVGL+L+  +S+P K
Sbjct: 582  SDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLK 639



 Score =  107 bits (268), Expect(3) = 4e-55
 Identities = 54/94 (57%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINRTP+K L F T  E L  Q  D   LRVFGC C+P+ RPYN HKL++RS+   FL
Sbjct: 649  VYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFL 708

Query: 1104 GYSP*HKGYKILLPN-NRVIITRHLVFDETQLPF 1006
            GYS  HKG+K L P+  RV I+R ++FDET  PF
Sbjct: 709  GYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPF 742



 Score = 21.9 bits (45), Expect(3) = 4e-55
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 2001 YGSKDRCTWNVLLQGALKNGLYSFNFSSP 1915
            +  KD  T  +L +G  +  LY+   SSP
Sbjct: 409  FNLKDLATKKLLFRGPCRGRLYALPSSSP 437



 Score = 70.5 bits (171), Expect(2) = 2e-16
 Identities = 32/49 (65%), Positives = 41/49 (83%)
 Frame = -1

Query: 370  SPIIKPTTIRIVLRIALSQSWNIRQLDVANAFLNGDLETELYMEQPPGF 224
            SP++K  TIRIVL IA+S+ W +RQLDV NAFL+G LE E+YM+QPPG+
Sbjct: 1021 SPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGY 1069



 Score = 45.4 bits (106), Expect(2) = 2e-16
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSNQ 1
            RAW  + +  L  LGF  +K D SL F + G   I +L YVDDI++TS++
Sbjct: 1093 RAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSR 1142



 Score = 63.2 bits (152), Expect = 1e-06
 Identities = 56/181 (30%), Positives = 75/181 (41%), Gaps = 28/181 (15%)
 Frame = -3

Query: 611  GIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIG 432
            G VK K   + + V  E   + +AL    WK+AM  EYEAL  N TW L P  Q + +I 
Sbjct: 924  GTVKYK--NTFLTVTGEPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVID 981

Query: 431  CRW-------------------IDKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISIM 309
            C+W                   + KG+ Q  G DY +T     KA      +   ++SI 
Sbjct: 982  CKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKA-----ATIRIVLSI- 1035

Query: 308  EY*TVRCCQCFSQWGFRD*TLHG---------TTSGFCSATF*IKSLVCKLKKSLYSLKQ 156
                V    C  Q   ++  LHG            G+   +F     VCKL K+LY LKQ
Sbjct: 1036 ---AVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESF--PGYVCKLDKALYGLKQ 1090

Query: 155  A 153
            A
Sbjct: 1091 A 1091


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  146 bits (368), Expect(2) = 5e-55
 Identities = 73/169 (43%), Positives = 103/169 (60%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P   V+K  F   N P I                  LP  LS +  + PF+LI+SDLW
Sbjct: 157  GHPHNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLW 216

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P+ S +GY  YV+FVD  TR+TW+ +LK+K+ TL  F +F   +  QF   IK + +
Sbjct: 217  GPAPVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQT 276

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGEF++ T YL ++GI HR  CP+T  QNG+ +RKHR+I E+GL+L+
Sbjct: 277  DWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLL 325



 Score = 99.0 bits (245), Expect(2) = 5e-55
 Identities = 48/93 (51%), Positives = 60/93 (64%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     F  L     D   LRVFGC C+P+ RPYNK KL++RSQ  VFL
Sbjct: 343  VYLINRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFRSQECVFL 402

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLPF 1006
            GYS  HKGYK L P+ RV I++ ++F E + P+
Sbjct: 403  GYSTSHKGYKCLAPSGRVFISKDVIFCENRFPY 435



 Score = 87.0 bits (214), Expect(2) = 7e-21
 Identities = 66/211 (31%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
 Frame = -3

Query: 728  PIRVNDQTSSVSTNALSQLVTSSVAGHTCTHHMVTMSKSGIVKPKV*KSHVEVLDEHTPV 549
            P + +  + + + +A + L T   A     H M T +K+GIVKP++  + +    E    
Sbjct: 482  PSQPSHTSPTPNPSASTSLPTHVEAPPINLHPMTTRAKAGIVKPRLQPTLLLTHFEPKNT 541

Query: 548  QEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIGCRW------------------ 423
            ++AL+   W  AM  EY AL  N TWTL PLP ++  IGC+W                  
Sbjct: 542  KQALASDTWLAAMKQEYNALMANGTWTLVPLPSHRTAIGCKWVFRIKENPDGTVHKHKAR 601

Query: 422  -IDKGYTQTLGFDYTETL*SHNKANHHQNCSTHCLISIMEY*TVRCCQCFSQWGFRD*TL 246
             + KG+ Q  GFDYTET     K    +   T  L        +     F      +   
Sbjct: 602  LVAKGFHQQFGFDYTETFSPVVKPVTIRLILTLALTHHWSIQQLDVNNAFLNGNLEEEVY 661

Query: 245  HGTTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
                 GF S+    KSLVCKL K++Y LKQA
Sbjct: 662  MSQPPGFESSD---KSLVCKLHKAIYGLKQA 689



 Score = 43.9 bits (102), Expect(2) = 7e-21
 Identities = 23/49 (46%), Positives = 27/49 (55%)
 Frame = -2

Query: 150 RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
           RAW  K  + L HL F  +K D SL       + I IL YVDDI+IT N
Sbjct: 691 RAWFDKLKATLFHLNFQISKCDPSLFVYSHANNVIYILVYVDDIIITGN 739


>gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 653

 Score =  141 bits (356), Expect(2) = 2e-54
 Identities = 71/169 (42%), Positives = 104/169 (61%)
 Frame = -1

Query: 1795 GYPSFAVVKRAFNSFNIPFIENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            G+P+  V+K    +FNI  + N K              LP  LS +    PFDL++SDL 
Sbjct: 378  GHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKTVYNTPFDLVYSDLC 437

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GP+P+ S  GY  YV+FVD  TR+T+L  LK+K+ T   F +F   ++ Q+H  IK + +
Sbjct: 438  GPAPVTSTCGYQYYVTFVDAHTRFTYL--LKSKAQTFNVFKQFHAMVKNQYHHPIKALQT 495

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLI 1289
            D GGE+++ T YLN+ GI HR  CP+T  +NG+ +RKHR+I E+GL+L+
Sbjct: 496  DWGGEYRSFTNYLNEVGIQHRLICPHTHHRNGVVERKHRHIIELGLTLL 544



 Score =  102 bits (253), Expect(2) = 2e-54
 Identities = 48/92 (52%), Positives = 62/92 (67%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            VYLINR PS  +     +  L  Q  D L LR+FGC C+P+ RPYNKHKL++RSQ  VF+
Sbjct: 562  VYLINRLPSSSIQNAIPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFV 621

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLP 1009
            GYS  HKGYK L  + R+ I+  +VF+ET+ P
Sbjct: 622  GYSTSHKGYKCLAADERLYISNDVVFNETKFP 653


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  136 bits (342), Expect(3) = 2e-54
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
 Frame = -1

Query: 1792 YPSFAVVKRAFNSFNIPF-IENEKQXXXXXXXXXXXXXLPFALSNSHTYQPFDLIHSDLW 1616
            + S  +V+    + N+P  I ++               LPF+ S +    P +L++SD+W
Sbjct: 488  HASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVW 547

Query: 1615 GPSPIKSVSGYSCYVSFVDDATRYTWLCLLKAKSDTLIAFVRFKTFIETQFHKTIKIM*S 1436
            GPS   S  G+  YV F D  ++YTW+  +  KS+T   F+ FK+ +E QF   IK+  S
Sbjct: 548  GPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMFQS 607

Query: 1435 DGGGEFKALTGYLNKNGILHRFSCPYTPQQNGLAKRKHRNISEVGLSLINS 1283
            DGG EF  LT   N+NGI HR SCP++ QQNG A+RKHR+I+EVGL+L++S
Sbjct: 608  DGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSS 658



 Score = 97.4 bits (241), Expect(3) = 2e-54
 Identities = 44/92 (47%), Positives = 62/92 (67%)
 Frame = -2

Query: 1284 VYLINRTPSKPLLFKTSFEALTGQKLDLLHLRVFGCLCYPYWRPYNKHKLEYRSQPSVFL 1105
            +++INR P+  L  K+ +E L  +  D L LR FGC CYP+ RP+N HK+++RS   VF+
Sbjct: 674  IHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNSHKMDFRSSQCVFI 733

Query: 1104 GYSP*HKGYKILLPNNRVIITRHLVFDETQLP 1009
            GYS  HKGYK    N ++II+R++VFDE   P
Sbjct: 734  GYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765



 Score = 30.8 bits (68), Expect(3) = 2e-54
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 1992 KDRCTWNVLLQGALKNGLYSFNFSSPKSFTMKSSGPD-HRHNFGSVSINSA---VVKDRI 1825
            K + +   LL+G LKNGLY F+        ++   PD + H   SV  N     V + R 
Sbjct: 425  KSQDSKETLLRGNLKNGLYVFD-------EVQILKPDVYEHTVDSVPTNRTTLYVQRTRK 477

Query: 1824 NLDVWH 1807
            + DVWH
Sbjct: 478  SYDVWH 483



 Score = 70.1 bits (170), Expect(2) = 1e-16
 Identities = 67/232 (28%), Positives = 92/232 (39%), Gaps = 24/232 (10%)
 Frame = -3

Query: 776  SLDISLEEGGQLYVDLPIRVNDQTSSVSTNALSQLVT-----SSVAGHTCTHHMVTMSKS 612
            S+D SL++          + N  TSS   N    + T     S     T  H M+T +K 
Sbjct: 811  SIDESLQDSQLTSTTDTSQDNLITSSSQPNPQPIITTVPDPASPATRTTNQHPMITRAKI 870

Query: 611  GIVKPKV*KSHVEVLDEHTPVQEALSVPEWKQAMTYEYEALPKNDTWTLCPLPQNKQLIG 432
            G+ KPK   +  E +     V +AL    WKQAM  EY AL KN TW L  LP  +  I 
Sbjct: 871  GVFKPKAFLATSEPIS----VAQALDNKHWKQAMQDEYNALLKNHTWDLVSLPPGRTAIT 926

Query: 431  CRWIDK-------------------GYTQTLGFDYTETL*SHNKANHHQNCSTHCLISIM 309
            C+WI K                   G++Q  G DYT+T     K    +      +    
Sbjct: 927  CKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSIRIVLALAVSKGW 986

Query: 308  EY*TVRCCQCFSQWGFRD*TLHGTTSGFCSATF*IKSLVCKLKKSLYSLKQA 153
                +     F     ++        GF +      + VCKL+K+LY LKQA
Sbjct: 987  PIHQIDVDNAFLNGDLKEDIYMLQPQGFHNGA---PNTVCKLRKALYGLKQA 1035



 Score = 46.6 bits (109), Expect(2) = 1e-16
 Identities = 26/49 (53%), Positives = 30/49 (61%)
 Frame = -2

Query: 150  RAWTGKFASALLHLGFSAAKLDNSL*FRHCGVSCILILAYVDDIVITSN 4
            RAW  K    LL LGF  A+ D+SL      V+ I IL YVDDI+ITSN
Sbjct: 1037 RAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVDDIIITSN 1085