BLASTX nr result
ID: Rehmannia27_contig00041450
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00041450
(4680 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 1014 0.0
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t... 1011 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 1006 0.0
emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera] 967 0.0
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab... 964 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 953 0.0
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 944 0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 942 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 907 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 878 0.0
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera] 875 0.0
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 864 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 857 0.0
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo... 853 0.0
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 857 0.0
gb|KYP39694.1| Retrovirus-related Pol polyprotein from transposo... 849 0.0
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana] 849 0.0
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 840 0.0
gb|KYP58728.1| Retrovirus-related Pol polyprotein from transposo... 835 0.0
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo... 823 0.0
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 1014 bits (2621), Expect = 0.0
Identities = 583/1400 (41%), Positives = 805/1400 (57%), Gaps = 28/1400 (2%)
Frame = -3
Query: 4117 MVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSV 3938
MV+SW+++S+S + + ++ D A D+W D+ R+ + + L+ + +++ QG++SV
Sbjct: 1 MVVSWLVHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSV 60
Query: 3937 VEYFTKLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQV 3776
EYFTKL+ LWDEL P P C + +I +R + + MQFL GL++ Y+ V
Sbjct: 61 TEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNV 120
Query: 3775 RNQLLLMDPLPSVDKAYSMALRVEKQ-------RNVQLMYPGNSENAAMSTRVNTXXXXX 3617
++ +LLM+P + K +S ++ E+Q NV L S A+++ T
Sbjct: 121 KSHVLLMEP--PISKIFSYVVQQERQLLGQNFIANVHL--DRTSSINAVASPTCTHCNRT 176
Query: 3616 XXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGY 3437
G + N G PRR IC HC TGH C++ HG+
Sbjct: 177 GHTDAVCFRKHGFPSTTNRSNKGSSNR-PRR--------ICTHCGKTGHTIEVCYQKHGF 227
Query: 3436 PDWFKQLKEERSRMMANSVHSETIETGNHDQHKEVPQLDITALVQQEISKALASKLQQGT 3257
P K L ++ + + H +T Q L+
Sbjct: 228 PPGSKPLSDKTASV----------------NHTVTGDCKVTESTQS---------LESQD 262
Query: 3256 GGSEYPMNFAHFTDFAGTILPFSSQYALATLENLKPDSWILDTGASRHMCASSKLMSNLV 3077
+ +P+ + A++T P SWILD+GA+ H+ +S S+
Sbjct: 263 VRTSFPIVCS----------------AIST-----PSSWILDSGATDHVSSSLSHFSSFS 301
Query: 3076 PISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCL 2897
PI+ + V P G + THSG V ++ L DVL +P+F YNL+SIS+L S + + +
Sbjct: 302 PINP-IDVKLPTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLI 360
Query: 2896 FFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXSLGIKDTESCNSSFLLWHRRL 2717
F C+IQ+ T + + LY F + I + LWH R+
Sbjct: 361 FDHHSCIIQETNTMKKIGTVDVNEGLYSFTASNIHHPSTNSVIVHPKCSIQPIDLWHFRM 420
Query: 2716 GHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVW 2537
GH S L+ F LS DT SC CH +KQ +LPF S ++S+ F+LLH+D+W
Sbjct: 421 GHLSHERLQSFPF---LSVDTSF---SCNTCHHAKQKKLPFPLSHSYASQPFDLLHMDIW 474
Query: 2536 GPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRS 2357
GP + S+ G +FLTIVDD +R TW++LM +K++ I F+ +ETQF VKV R+
Sbjct: 475 GPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKHVKVIRT 534
Query: 2356 DNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQF 2177
DNG EF+ + F S GIIHQ TCV TPQQNGIVERKH+HLLNV R+L+FQ++LPS F
Sbjct: 535 DNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQANLPSIF 591
Query: 2176 WPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAA 1997
W F+++HA +LIN +P+ LH +PFE L+G S L FGCL Y++ H++K
Sbjct: 592 WCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSHRTKLDP 651
Query: 1996 RAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFP---------FAS-IPVPSN 1847
RA+ C+FLG+ KGY L++L H LL SR+V+F ED FP F+S +P+ N
Sbjct: 652 RAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSPVPIHYN 711
Query: 1846 XXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISKPPAWLSDF-----ITNSVHS 1682
+S S P PLRRS+R +PP +L DF T++ HS
Sbjct: 712 YVDYPTFPSSSIVESSDPPTSDQHSSPP--PLRRSTRPRRPPTYLQDFHGAFTSTSTAHS 769
Query: 1681 STPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADW 1502
ST + P HS + L SF+H ++ ++S+V EP +F++A KS W
Sbjct: 770 STGIRHPLHSFL----SYDLLSPSFHH----------YVFSISSVTEPKNFAEASKSDSW 815
Query: 1501 VDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQE 1322
+ AM E+ ALE NNTWVLT+LPP K AIGC+WVYKVK + DG+++RYKARLVAKG+ Q
Sbjct: 816 LKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQM 875
Query: 1321 HGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSK 1142
G+D+ D+FSPVAKL TVRL+++LA I W L QLDVNNAFLHG L+E++YM P G +
Sbjct: 876 EGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLTP 935
Query: 1141 AKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXX 962
+ G+VC LQRSLYGLKQASRQW A L Q G+ S DH LF++ S
Sbjct: 936 SFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAILIY 995
Query: 961 XXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDIL 782
++++G L+EI L L F IKDLG +YFLG+E+ARN G L QRKY+LD+L
Sbjct: 996 VDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYILDLL 1055
Query: 781 HDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLS 602
D GML K TP+ + L A G PL D +RRL+GRL+YL TRPD+TY+VQQLS
Sbjct: 1056 SDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIYLTNTRPDITYAVQQLS 1115
Query: 601 QFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGF 422
QFV++P T+H A +LRYLKG+P G+F S +SS+ L A+ D+DWA C DTR+S+TGF
Sbjct: 1116 QFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSDWAGCPDTRRSITGF 1175
Query: 421 CIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWC 242
++LG L+SWK+KKQ TVSRSS+EAEYRAL + CE+QWLSYL D + +P L+C
Sbjct: 1176 AVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDPISPSILYC 1235
Query: 241 DNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAA 62
DNQ+A+ I NPVFHERTKH+EIDCH+VR+ +G L L VSS QLAD TK L
Sbjct: 1236 DNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSQQLADILTKPLSPFV 1295
Query: 61 FLLLCSKLGLFDLHNPT*GG 2
F CSKLG+ ++H+ GG
Sbjct: 1296 FRSHCSKLGMLNIHSQLEGG 1315
>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 1011 bits (2614), Expect = 0.0
Identities = 576/1488 (38%), Positives = 827/1488 (55%), Gaps = 34/1488 (2%)
Frame = -3
Query: 4381 NRRNNLGPVLNTGTTESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAK 4202
N+R ++ P +++ Y P L + D PG +LVS L G N+ SW+ +M ++L AK
Sbjct: 43 NKRPSMYPFPQFDFSDAHYS--PFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAK 100
Query: 4201 TKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIA 4022
K+ F++G + P E P + W + + MV SWILNS++K + + + + A ++W D+
Sbjct: 101 NKIAFVDGTLPRPPESDPSFRVWSRCNSMVKSWILNSVTKQIYKSILRFNDAAEIWKDLD 160
Query: 4021 KRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDEL---ACIMPLPACES--DT 3857
RF N P YQL + I ++ QG MS+ +Y+T LK LWD+L +C+ C T
Sbjct: 161 TRFHITNLPRSYQLTQQIWSLQQGTMSLSDYYTALKTLWDDLDGASCVSTCKNCTCCIAT 220
Query: 3856 RKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMY 3677
+I+ + K+++FL GL+ESY +R+Q+++ +P + + Y++ + QRN+ M
Sbjct: 221 ASMIE----HSKIVKFLSGLNESYSTIRSQIIMKKTIPDLAEIYNLLDQDHSQRNIVTM- 275
Query: 3676 PGNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLI 3497
P N+ +S + N+ + G + K K+
Sbjct: 276 PTNASTFNVSAPQSDQFAV---------------------NLAKSFG-----TQPKPKVQ 309
Query: 3496 CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGNHDQHKEVPQ--- 3326
C HC TGH C+K+HGYP FK K++++ + S D V Q
Sbjct: 310 CSHCGYTGHNADTCYKIHGYPVGFKH-KDKKTVTPSEKPKSVVANLALTDGKVSVTQGIG 368
Query: 3325 ----LDITALVQQEISKALASKLQQGTGGSEYPMNFAHF--------TDFAGTILPFSSQ 3182
+++ + + + + + P+ A F + F G S+
Sbjct: 369 PDGIVELVGSMSKSQIQDVIAYFSTQLHNPAKPITVASFASTNNDNGSTFTGISFSPSTL 428
Query: 3181 YALATLENLKP----DSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHS 3014
L +L + K ++WI+D+GA+ H+ L +L S+ V P GS +
Sbjct: 429 RLLCSLTSSKKVLSLNTWIIDSGATHHVSYDRNLFESLSDGLSN-EVTLPTGSNVKIAGI 487
Query: 3013 GQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGE 2834
G + LNS LTL +VL +P F+ NLLS+SQ T+ K F C+IQD E+ G
Sbjct: 488 GVIKLNSNLTLKNVLYIPEFRLNLLSVSQQTKDMKCKIYFDEDCCVIQDPIKEQKIGRGN 547
Query: 2833 AVGSLYIFKDGXXXXXXXSLGIKDTES--CNS--SFLLWHRRLGHASFPVLKHLDFFKGL 2666
+G LY+ + TE CN+ LWH RLGH S+ L GL
Sbjct: 548 QIGGLYVLDTSSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHPSYEKNDVLHDVLGL 607
Query: 2665 SGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTI 2486
L C IC K+KQ L F S S F+L+HID WGP+ + G +FLTI
Sbjct: 608 PKRNKEDLVHCSICQKAKQKHLSFPSKNNMSENKFDLIHIDTWGPFATPTTEGYKYFLTI 667
Query: 2485 VDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHS 2306
VDD+SRATWVYLM K V + FLK++ETQ+ +VK RSDN E + L+ +
Sbjct: 668 VDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDNAPEL---RFEALYQA 724
Query: 2305 HGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPS 2126
GII +C TPQQN +VERKH+H+LNVARALMF++++P +FW +L A +LINRLP+
Sbjct: 725 KGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLEFWGDCILSAVFLINRLPT 784
Query: 2125 ALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGY 1946
LL K+PFELLH P Y++L+ FGCL Y + + + KFA RA CVFLGY +G KGY
Sbjct: 785 PLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLGYPSGYKGY 844
Query: 1945 RLYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQP 1766
+L DL+ +++ SR VVF+E FPF + P S
Sbjct: 845 KLLDLETNTIHISRHVVFYETVFPFTDKTI-------IPRDVFDLVDPVHENIENPPSTS 897
Query: 1765 ESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILG 1586
ES P S R S+PP +L D+ N+V T D ++ + + L
Sbjct: 898 ESAPKVSSKRESRPPGYLQDYFCNAVPDVTK-------------DVRYPLNAYINYTQLS 944
Query: 1585 ATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCK 1406
+TA++ ++ EP +++QA K +W+DAM+ E+ ALE NTW + SLP GK+ IGCK
Sbjct: 945 EEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWSVCSLPQGKKPIGCK 1004
Query: 1405 WVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPL 1226
WV+KVK+ DG++ER+KARLVAKG+ Q G+DY D+FSPVAK+ TV+ ++++A IK W L
Sbjct: 1005 WVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDTFSPVAKMTTVKTLLSVAAIKEWSL 1064
Query: 1225 FQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDG-----EVCHLQRSLYGLKQASRQWNAEF 1061
QLD++NAFL+G L E+IYM P GYS + G V LQ+SLYGLKQASRQW +F
Sbjct: 1065 HQLDISNAFLNGDLKEEIYMTLPPGYSMKQGGVLPQNPVLKLQKSLYGLKQASRQWYLKF 1124
Query: 1060 CLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTI 881
L++ GF +S DH LF R S ++I+G I+ LK+ L F +
Sbjct: 1125 SSTLKKLGFKKSHADHTLFTRISGKAYIALLVYVDDIVIAGNNDENIEELKKDLAKAFKL 1184
Query: 880 KDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGD 701
+DLG +YFLG+EIAR +G + QRKY +++L D G+L C+ + P+ P LKL +
Sbjct: 1185 RDLGPMKYFLGLEIARTKEGISVCQRKYTMELLEDTGLLGCRPSTIPMEPSLKLSQHNDE 1244
Query: 700 PLVD-PERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPS 524
++D PE +RRL+G+L+YL +TRPD+TY++ +L QF +SP SH AA ++ YLKG+
Sbjct: 1245 HVIDNPEVYRRLVGKLMYLTITRPDITYAINRLCQFSSSPKNSHLKAAQKVVHYLKGTIG 1304
Query: 523 VGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEA 344
+GLFYS+ S LCL+AY DADW SCVD+R+S +G C+FLG L+SWK+KKQ S SSAE+
Sbjct: 1305 LGLFYSSKSDLCLKAYTDADWGSCVDSRRSTSGICMFLGDSLISWKSKKQNMASSSSAES 1364
Query: 343 EYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCH 164
EYRA+ G EI WL L A+ + PV L+CD+ AAIHI N VFHERTKH+E DCH
Sbjct: 1365 EYRAMAMGSREIAWLVKLLAEFQVKQTKPVPLFCDSTAAIHIANNAVFHERTKHIENDCH 1424
Query: 163 LVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLH 20
+ R+ + G L HV + QLAD TK L F L K+ L ++
Sbjct: 1425 ITRDRIEQGMLKTMHVDTTSQLADVLTKPLFPTLFNSLIGKMSLLSIY 1472
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 1006 bits (2601), Expect = 0.0
Identities = 578/1468 (39%), Positives = 816/1468 (55%), Gaps = 41/1468 (2%)
Frame = -3
Query: 4282 LSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISW 4103
++LVS L NY SW RSML AL AK K+ F++G P Y W++ + MV+SW
Sbjct: 1 MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60
Query: 4102 ILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFT 3923
++ S+S + + ++ DSA+++W D+ R+ + I L+ + +++ QG++SV +YFT
Sbjct: 61 LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120
Query: 3922 KLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQVRNQLL 3761
+L+ +WDEL P P C + ++ +R + + MQFL GL++ Y VR+ +L
Sbjct: 121 QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVL 180
Query: 3760 LMDPLPSVDKAYSMALRVEKQRNVQLMYPGNSENAAMSTRVNTXXXXXXXXXXXXXNWSG 3581
LMDPLP ++K +S + E+Q V A + +N+
Sbjct: 181 LMDPLPPINKIFSYVAQQERQFAVSDSLAEVKNGFANAAIMNST---------------- 224
Query: 3580 GRGRSGEWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERS 3401
C C GH ++ C++ HG+PD + R
Sbjct: 225 ----------------------------CNFCGRNGHTESTCYRKHGFPDKNGKSSSNRG 256
Query: 3400 RMMAN-SVHSETIETGNHDQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAH 3224
+ ++ + T++T + +H P
Sbjct: 257 KACSHCGKNGHTVDTC-YKKHGFPPG--------------------------------HR 283
Query: 3223 FTDFAGTILPFSSQYALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFP 3044
F++ S Q + T + WI+D+GA+ H+ S + ++ I V V P
Sbjct: 284 FSNNKSASANSSVQPHICTTHSFDTTPWIIDSGATDHVTCSLQFFTSYKLIEP-VIVNLP 342
Query: 3043 DGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDL 2864
G THSG V +S L DVL + SF +NL+S+S+L +++ + F + C IQD+
Sbjct: 343 TGHKVTATHSGTVYFSSNFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDI 402
Query: 2863 RTEEVKAVGEAVGSLYIFKDGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHL 2684
RT+ + G LY I + LWH RLGH S L ++
Sbjct: 403 RTKMKIGSVDVRGGLYQLIPHHFKPPFIHSTIIHPKCDVIPIDLWHFRLGHLSNTRLHNM 462
Query: 2683 D-FFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFS-LT 2510
+ L+ + D T C ICH +KQ +L F SS +SR F LLH+D+WGPY+ S +
Sbjct: 463 QQLYPCLTINKDFT---CNICHYAKQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIH 519
Query: 2509 GTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSK 2330
G FF TIVDD + TW++LM +K++ IS F+ LIE QF ++ ++DNG EF
Sbjct: 520 GHKFFFTIVDDNTHFTWIFLMINKSETRMHISNFINLIENQFNTRIQTIQTDNGAEFLM- 578
Query: 2329 ECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAA 2150
QN F+S GI+HQ TC+ TPQQNG+VERKH+HLLNV AL+F S LP FW +++LHA
Sbjct: 579 --QNFFNSKGIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHAT 636
Query: 2149 YLINRLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLG 1970
YLINR+ + LL KTPF+ L+G + + LR FGCL Y + + ++ K RA+ CVFLG
Sbjct: 637 YLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLG 696
Query: 1969 YITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPF-------ASIPVPS------------- 1850
+ KGY YDL ++ SR+V F+E+ FP ++IPV S
Sbjct: 697 FSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPISFGIHSPSHDL 756
Query: 1849 -----NXXXXXXXXXXXXXXXXXXTSSAPIS------QPESHPLRRSSRISKPPAWLSDF 1703
+ S AP S P S PLRRS+R+ PP++L D+
Sbjct: 757 ISILPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDY 816
Query: 1702 ITNSVHSSTPMASPSHSAGPDSGDFSLAP-TSFNHSSILGATYTAFLANLSNVEEPSSFS 1526
HS T ++ H L P + S L + AF++++S V EP S++
Sbjct: 817 ----HHSLTSTSTNLHPG-------MLYPIEKYISYSRLSNDFQAFVSSISAVSEPHSYA 865
Query: 1525 QACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARL 1346
+A K W+ AM EL AL+ N TW LT LPP K+A+GC+W+YK+K DG++ERYKARL
Sbjct: 866 EAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYKARL 925
Query: 1345 VAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYM 1166
VAKG+ Q G+DYL +FSPVAKL TVRL++ALA + W L QLDVNNAFLHG L+E++YM
Sbjct: 926 VAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYM 985
Query: 1165 LPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXX 986
P G +VC LQ+SLYGLKQASRQW A+ L G+ QS DH LF++ S
Sbjct: 986 TLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSS 1045
Query: 985 XXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQ 806
++++G LSEI + LD F IKDLG +YFLG+E+ARN G L+Q
Sbjct: 1046 STTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQ 1105
Query: 805 RKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDV 626
RKYVLDIL D GM+ + TP+ +L A G PL DP +RRL+GRL+YL TRPD+
Sbjct: 1106 RKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPDI 1165
Query: 625 TYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVD 446
+Y V LSQF+++P T+H A +LRYLK +P GLF+ +SSL L+A+ D+DWA C+D
Sbjct: 1166 SYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLD 1225
Query: 445 TRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSI 266
TR+S+TGF ++LG L+SW++KKQ TVSRSS+EAEYRAL + E+QWL+YL DL + +
Sbjct: 1226 TRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPV 1285
Query: 265 PTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFF 86
P L+CDNQ+A+HI N VFHERTKH++IDCHLVR +SG L L V+S QLAD F
Sbjct: 1286 HQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPHQLADIF 1345
Query: 85 TKSLGRAAFLLLCSKLGLFDLHNPT*GG 2
TKSL + F L SKLG+ +L++ GG
Sbjct: 1346 TKSLSPSMFTALYSKLGMLNLYSQLEGG 1373
>emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]
Length = 1322
Score = 967 bits (2499), Expect = 0.0
Identities = 581/1445 (40%), Positives = 786/1445 (54%), Gaps = 40/1445 (2%)
Frame = -3
Query: 4225 MLIALGAKTKLGFINGKMEIPKE-DSP-KYDQWRKVDCMVISWILNSISKDLVDAFIYCD 4052
M I+L AK+KLGFI+G +P D P ++ W+K + M++SWILNS+S+DL D+ I+
Sbjct: 1 MTISLNAKSKLGFIDGTTTMPSATDKPDEHASWKKCNDMILSWILNSLSQDLADSVIFST 60
Query: 4051 SAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMP-LP 3875
+A+++W+D+ RF N P I+Q+ER IA + Q M+V Y+T+LK+LWDEL +
Sbjct: 61 TAQEVWEDLRDRFSQSNAPRIFQIERGIACLTQDQMTVAAYYTRLKKLWDELGSYNDTVC 120
Query: 3874 ACESDTRKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQR 3695
+C +D ++ R+LMQFLMGL+ESY+ +R Q+LLM+PLP+V KAYS ++ EKQR
Sbjct: 121 SCGADYKR--------RRLMQFLMGLNESYNAIRGQILLMNPLPNVAKAYSSIVQEEKQR 172
Query: 3694 NVQLMYPGNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKE 3515
++ +EN+AM R R V G+G R+
Sbjct: 173 SLGATRE-TTENSAMVVR---------------------RAEPMALAVRHGQGSSSRSNP 210
Query: 3514 EKAK-LICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMA------NSVHSETIETG 3356
K L C +C H + C+KL+GYP + RS + NS S
Sbjct: 211 SNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHASNRSNHGSTHFKRNNSHQSSANNVN 270
Query: 3355 NHDQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYA 3176
H +EVP + L +I + L+ +GT S P A + T+L
Sbjct: 271 EHPVMQEVPSMT-NGLSDLQIQQILSIMQGKGTTQSTNPKANAAASGLLQTLLH------ 323
Query: 3175 LATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLN 2996
L L I+D+GA+ H+ +S L+ N + V P G +T G + LN
Sbjct: 324 ---LHRL-----IIDSGATDHITSSPTLLVNSSKNTLLPLVGMPSGEQAPITSIGNLPLN 375
Query: 2995 STLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLY 2816
+TL +VL VPSFK +L+S+S++T+ N FFP +C++QDL T +GE LY
Sbjct: 376 PAVTLKNVLGVPSFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGLY 435
Query: 2815 IFKDGXXXXXXXSLGIKDTESCNS-------SFLLWHRRLGHASFPVLKHLDFF-KGLSG 2660
SC S S LWH RLGH S LDF K L
Sbjct: 436 YLVALASEKPKNQTPSAAATSCRSPSSQVTSSTALWHHRLGHLSS---SRLDFMAKHLLN 492
Query: 2659 DTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVD 2480
+ ++C++C +KQ RLPF S I S R FEL+H D+WGPY SL+
Sbjct: 493 FPFQSNNACDVCALAKQRRLPFSVSSISSIRPFELIHCDIWGPYKIASLSAN-------- 544
Query: 2479 DFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHG 2300
R DNG EF S + F G
Sbjct: 545 --------------------------------------IRVDNGGEFFSM--REFFKQKG 564
Query: 2299 IIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSAL 2120
+Q +CVYTPQQNG+VERKHRH+L ARA FQ+ LP FW V A ++INRLP+ L
Sbjct: 565 TTYQHSCVYTPQQNGVVERKHRHILESARAFRFQAHLPLPFWAECVSTAVHIINRLPTPL 624
Query: 2119 LHWKTPFELLHGASPTYSNLRPFGCLSYAANTH-PHKSKFAARAYKCVFLGYITGQKGYR 1943
L +TPFE L+G P+YS++R FGCL+YA N H PH KFA RA +C+FLGY GQK Y+
Sbjct: 625 LSRQTPFERLYGKLPSYSHIRVFGCLAYATNVHVPH--KFAPRAKRCIFLGYPVGQKAYK 682
Query: 1942 LYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSS-----AP 1778
LYDLD H + TSRDVVF E FP+ SIP PS+ S +P
Sbjct: 683 LYDLDTHQMFTSRDVVFHETIFPYESIPSPSSNSDPVIPLSISDLSPPVQQPSPPEPISP 742
Query: 1777 ISQPE---------SHP-------LRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAG 1646
I QP SH LRRS R PP L D++ N V + P P S+
Sbjct: 743 IQQPSLPNSVSTQPSHASPPPEPILRRSQRPHHPPMALRDYVCNQV--TFPNHLPPLSSS 800
Query: 1645 PDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALE 1466
P G +F + +F A +S EP+S+++A + W +AMQ EL ALE
Sbjct: 801 PQKGT-RYPLCNFVSYHRYSPQHRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSELAALE 859
Query: 1465 QNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPV 1286
N+TW LTSLP GK+ IGC+WVYK+K DGT+ER+KARLVAKG+ Q G+DY D+FSP
Sbjct: 860 ANHTWSLTSLPLGKKPIGCRWVYKIKRHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPT 919
Query: 1285 AKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRS 1106
AK++TVR ++ALA + W L QLDVNNAFLHG L E+IYM PP G
Sbjct: 920 AKMITVRCLLALAAAQNWSLHQLDVNNAFLHGDLHEEIYMSPPPG--------------- 964
Query: 1105 LYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLS 926
RQ F +Q GF QS D+ LF + ++I+G +
Sbjct: 965 ------LRRQGENLFSTAIQAAGFVQSKADYSLFTCRKGKSFIALLIYVDDILITGNDAN 1018
Query: 925 EIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAI 746
I ALK++L F IKDLG +YFLG+E++R+ G ++QRKY L+IL D G L K
Sbjct: 1019 AIVALKQFLHSDFRIKDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVN 1078
Query: 745 TPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWD 566
P+ +KL + + L DP ++RRL+GRL+YL +TRPD+TYSV LS+F+++P H +
Sbjct: 1079 FPMEQNIKL-SDSSELLKDPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHME 1137
Query: 565 AAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWK 386
AA+ +LRYLK SP GLF+ + + L L A+ D+DWA C +R+S TG+C+FLGS L+SW+
Sbjct: 1138 AALRVLRYLKNSPGQGLFFPSQNDLSLRAFSDSDWAGCPISRRSTTGYCVFLGSSLISWR 1197
Query: 385 TKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNP 206
TK+Q TVS SSAEAEYRA+ CE+ WL L DL + P P L+CDN A+HI NP
Sbjct: 1198 TKRQKTVSLSSAEAEYRAMTGTCCELSWLRSLLKDLRILHPKPALLYCDNTTALHIAANP 1257
Query: 205 VFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFD 26
VFHERT+H+E+DCH +R + G H++S QLAD FTK LG+ F + KLG+ D
Sbjct: 1258 VFHERTRHIEMDCHFIREKIQDGSFVTKHIASTNQLADVFTKPLGKETFSTMIHKLGVLD 1317
Query: 25 LHNPT 11
+H+PT
Sbjct: 1318 IHSPT 1322
>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 964 bits (2493), Expect = 0.0
Identities = 556/1445 (38%), Positives = 819/1445 (56%), Gaps = 32/1445 (2%)
Frame = -3
Query: 4315 PLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQ 4136
PL L+++DHPG+S+VS QL G NY W +M IAL AK K+ FI+G P+E +
Sbjct: 53 PLFLHNADHPGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLRI 112
Query: 4135 WRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMN 3956
W + + MV SWILNS+++++ + + D A +W+D+ RF N P +QL + I ++
Sbjct: 113 WSRCNSMVKSWILNSVNREIYGSILSFDDAAQIWNDLHNRFHMTNLPRTFQLVQQIQDLR 172
Query: 3955 QGNMSVVEYFTKLKRLWDEL---ACIMPLPACESDT--RKLIDERDMNR-KLMQFLMGLH 3794
QG+M++ Y+T LK L D L +P C+ T ++ + ++NR ++++FL GL+
Sbjct: 173 QGSMNLSTYYTTLKTLRDNLDGAEASVPCHCCKKSTCESQIFAKSNVNRGRIIKFLAGLN 232
Query: 3793 ESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMYPGNSENAAMSTRVNTXXXXXX 3614
E Y +R Q+++ PLP + + Y++ + + QR + N +AA +
Sbjct: 233 EKYSIIRGQIIMKKPLPDLAEVYNILDQDDSQRQ----FSNNVASAAFQVTKDDVQP--- 285
Query: 3613 XXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGYP 3434
G S G G + K++K+ IC H TGH C+KLHGYP
Sbjct: 286 -----------GALASSSNMPQPGMLGAVQKKDKKS--ICSHYGYTGHTSERCYKLHGYP 332
Query: 3433 DWFKQLKEERSRMMANSVHSETIE---------TGNHDQHKEVPQLDITALVQQEISKAL 3281
+K+ K ++ S S+ + TGN + I + + +I +
Sbjct: 333 VGWKKGKSFYEKIAQASQSSQAPKPNSAVTAQVTGNSQNTPAGLESLIGNMSKDQIQNLI 392
Query: 3280 A---SKLQQGTGG-SEYPMNFAHFTDFAGTILPFSSQYALATLE----NLKPDSWILDTG 3125
A S+LQ + + PM+ +H D +G S+ + L + +WI+D+G
Sbjct: 393 ALFSSQLQPASPVLNTAPMSTSHNNDPSGITFSSSTFSFIGILTVSETEMTHGTWIVDSG 452
Query: 3124 ASRHMCASSKLMSNL-VPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKY 2948
A+ H+C + NL + HV++ P G+T V G + +N+ L L +VL +P F+
Sbjct: 453 ATHHVCHVKDMFLNLDTSVQHHVNL--PTGTTIRVGGVGNIAVNADLILKNVLYIPEFRL 510
Query: 2947 NLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXSLGI 2768
NLLS+S LT + +F P+ C++ DL G +GS + LGI
Sbjct: 511 NLLSVSALTTDIGARVVFDPTCCVVHDLTK------GSTIGSDLL---------TDVLGI 555
Query: 2767 KDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLPFIS 2588
T++ KGL C+IC ++KQ +L + S
Sbjct: 556 FKTKN--------------------------KGLL--------HCDICQRAKQKKLTYPS 581
Query: 2587 SQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQF 2408
F+LLHIDVWGP++ + G +FLTIVDD +R TWVYLM +K+ V T+ F
Sbjct: 582 RHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWVYLMKYKSDVLTIFPDF 641
Query: 2407 LKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHL 2228
+ ++ETQ+ VK RSDN E +E L+ GI+ +C TP+QN +VERKH+H+
Sbjct: 642 ITMVETQYDTKVKAVRSDNAPELKFEE---LYRRKGIVAYHSCPETPEQNSVVERKHQHI 698
Query: 2227 LNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLRPFG 2048
LNVARAL+FQS +P +W +L A ++INR PS ++ KT FE+L P Y++L+ FG
Sbjct: 699 LNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTHLKSFG 758
Query: 2047 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 1868
CL YA+ + + KF RA C FLGY +G KGY+L DL++H++ SR+VVF+ED FPF
Sbjct: 759 CLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYEDLFPFK 818
Query: 1867 SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPL---RRSSRISKPPAWLSDFIT 1697
+ P + + P+ + + + +++SR+S+PPA+L D+
Sbjct: 819 TKPAENEESSVFFPHIYVDRNDSHPSQPLPVQETSASNVPAEKQNSRVSRPPAYLKDYHC 878
Query: 1696 NSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQAC 1517
NSV SST D ++ ++SS L Y F+ ++ + EP +++QA
Sbjct: 879 NSVTSST--------------DHPISEV-LSYSS-LSDPYMIFINAVNKIPEPHTYAQAR 922
Query: 1516 KSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAK 1337
+ +W DAM E+TALE N TWV+ SLP GK+A+GCKWVYK+K+ DG++ERYKARLVAK
Sbjct: 923 QIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAK 982
Query: 1336 GFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPP 1157
G+ Q G+DY+D+FSPVAKL TV+L+IA+A KGW L QLD++NAFL+G LDE+IYM P
Sbjct: 983 GYTQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLP 1042
Query: 1156 EGYSKAKDGE-----VCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQS 992
GYS + VC L++SLYGLKQASRQW +F L+ GFTQS DH LF R+S
Sbjct: 1043 PGYSPRQGDSFPPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKS 1102
Query: 991 XXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVL 812
+II+ + E + L+ L ++DLG RYFLG+EIARNTDG +
Sbjct: 1103 KNSYMAVLVYVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISI 1162
Query: 811 NQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRP 632
QRKY L++L + G+L CK++ P+ P KL ++G+ + D E +R+L+G+L+YL TRP
Sbjct: 1163 CQRKYTLELLAETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRP 1222
Query: 631 DVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASC 452
D+TY+V +L QF ++P H A ++ YLKG+ GLFYSA+ L L + D+D++SC
Sbjct: 1223 DITYAVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSC 1282
Query: 451 VDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGL 272
D+RK TG+C+FLG+ LV+WK+KKQ +S SSAEAEY+A+ V E+ WL +L DL +
Sbjct: 1283 SDSRKLTTGYCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWI 1342
Query: 271 SIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLAD 92
+ L+CDN AAIHI NPVFHERTKH+E D H +R G + HV + QLAD
Sbjct: 1343 DVSEASVLYCDNTAAIHIANNPVFHERTKHIERDYHHIREKIILGLIRTLHVRTENQLAD 1402
Query: 91 FFTKS 77
KS
Sbjct: 1403 IPYKS 1407
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 953 bits (2464), Expect = 0.0
Identities = 560/1483 (37%), Positives = 818/1483 (55%), Gaps = 34/1483 (2%)
Frame = -3
Query: 4369 NLGPVLNTGT----TESEYDD---DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIAL 4211
N PV +G T SE D P L+S+DHPGL+++S +L NY W +MLI+L
Sbjct: 36 NSPPVNRSGASRALTSSESGDPTQSPFFLHSADHPGLNIISHRLDETNYGDWSVAMLISL 95
Query: 4210 GAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWD 4031
AK K GFI+G + P E + W + + MV SW+LNS+S + + + + A D+W
Sbjct: 96 DAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWR 155
Query: 4030 DIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPA-CESDTR 3854
D+ RF N P Y L ++I + QG +S+ EY+T+LK LWD+L L C
Sbjct: 156 DLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKA 215
Query: 3853 KLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMYP 3674
+ ++ K+++FL GL+ESY VR Q++ LPS+ + Y + + Q++ +
Sbjct: 216 MRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVV- 274
Query: 3673 GNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLIC 3494
+ AA T + S + V + GP K + IC
Sbjct: 275 --APPAAFQVSEIT------------------QSPSMDPTVCYVQNGPN-----KGRPIC 309
Query: 3493 EHCSVTGHEKAECFKLHGYPDWFK------QLKEERSRMMANSVHSETIETGNHDQHKEV 3332
+ GH C+K HG+P F + ++ + AN S + T +
Sbjct: 310 SFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLESMVGNL 369
Query: 3331 PQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATL---- 3164
+ + + A+ S Q T S Y +D G S+ + L
Sbjct: 370 SKEQLQQFI------AMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVAR 423
Query: 3163 ENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLT 2984
L +W++D+GA+ H+ L S+L S +V P G T ++ G + LN +
Sbjct: 424 HTLSSATWVIDSGATHHVSHDRSLFSSL-DTSVLSAVNLPTGPTVKISGVGTLKLNDDIL 482
Query: 2983 LHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKD 2804
L +VL +P F+ NL+SIS LT + +F + C IQDL + G V +LY+
Sbjct: 483 LKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDV 542
Query: 2803 GXXXXXXXSLGIKDTESCNS--SFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHT---LD 2639
G + S N+ +WHRRLGHAS L+ LD G T H D
Sbjct: 543 GD-----------QSISVNAVVDISMWHRRLGHAS---LQRLDAISDSLGTTRHKNKGSD 588
Query: 2638 SCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATW 2459
C +CH +KQ +L F +S F+LLHIDVWGP++ ++ G +FLTIVDD SRATW
Sbjct: 589 FCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATW 648
Query: 2458 VYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTE--FTSKECQNLFHSHGIIHQK 2285
+YL+ K++V T+ F++ +E Q++ VK RSDN E FTS + GI+
Sbjct: 649 MYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTS-----FYAEKGIVSFH 703
Query: 2284 TCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKT 2105
+C TP+QN +VERKH+H+LNVARALMFQS +P W VL A +LINR PS LL KT
Sbjct: 704 SCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKT 763
Query: 2104 PFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDN 1925
P+E+L G +P Y LR FGCL Y++ + + KF R+ C+FLGY +G KGY+L DL++
Sbjct: 764 PYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLES 823
Query: 1924 HSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPES----H 1757
+++ SR+V F E+ FP A P + T+ +P S P
Sbjct: 824 NTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLP 883
Query: 1756 PLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATY 1577
P S R+ KPPA L+D+ N++ S P S S + S +H
Sbjct: 884 PQISSQRVRKPPAHLNDYHCNTMQSDHKY--------PISSTISYSKISPSHM------- 928
Query: 1576 TAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVY 1397
++ N++ + P+++++A + +W +A+ E+ A+E+ NTW +T+LP GK+A+GCKWV+
Sbjct: 929 -CYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVF 987
Query: 1396 KVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQL 1217
+K DG +ERYKARLVAKG+ Q+ G+DY D+FSPVAK+ T++L++ ++ K W L QL
Sbjct: 988 TLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQL 1047
Query: 1216 DVNNAFLHGYLDEDIYMLPPEGYSKAK-----DGEVCHLQRSLYGLKQASRQWNAEFCLK 1052
DV+NAFL+G L+E+I+M PEGY++ K V L+RS+YGLKQASRQW +F
Sbjct: 1048 DVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSS 1107
Query: 1051 LQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDL 872
L GF ++ DH LF++ ++I+ T + L LD F ++DL
Sbjct: 1108 LLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDL 1167
Query: 871 GYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLV 692
G +YFLG+E+AR T G + QRKY L++L GML CK P+ P LK+R +GD +
Sbjct: 1168 GDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIE 1227
Query: 691 DPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLF 512
D E++RR++G+L+YL +TRPD+T++V +L QF ++P T+H AA +L+Y+KG+ GLF
Sbjct: 1228 DIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLF 1287
Query: 511 YSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRA 332
YSA S L L+ + D+DWASC D+R+S T F +F+G L+SW++KKQ TVSRSSAEAEYRA
Sbjct: 1288 YSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRA 1347
Query: 331 LGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRN 152
L CE+ WL L L S P P+ L+ D+ AAI+I NPVFHERTKH+++DCH VR
Sbjct: 1348 LALATCEMVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRE 1406
Query: 151 LYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDL 23
+G L L HV + Q+AD TK L F L SK+ + ++
Sbjct: 1407 RLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSILNI 1449
>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1352
Score = 944 bits (2441), Expect = 0.0
Identities = 557/1385 (40%), Positives = 770/1385 (55%), Gaps = 40/1385 (2%)
Frame = -3
Query: 4036 WDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDT 3857
W R+ + I L+ + +++ QG++S+ E+FTKL+ +WDEL P P C S T
Sbjct: 39 WSRSISRYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTC-SCT 97
Query: 3856 RKL-------IDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQ 3698
+K I +R + MQFL GL+E Y V++ +LLMDP+P + K +S ++ E+Q
Sbjct: 98 QKCSCNVIPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQ 157
Query: 3697 RNVQLMYPGNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTK 3518
L+ N T +
Sbjct: 158 ----LLGSNFVANTITKTAIINAA------------------------------------ 177
Query: 3517 EEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEE---RSRMMANSVHSETI--ETGN 3353
+ + C +C GH + C++ HG+P + + ++ + S+ + T+ E
Sbjct: 178 ---SSVTCTYCGKQGHAENVCYRKHGFPSNHENKTNKGVYKASIGKTSIVNSTVTDECKT 234
Query: 3352 HDQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYP----MNFAHFTDFA-------- 3209
+DQ + D QQ + L +QQ T S N H
Sbjct: 235 NDQQQATITQDYRFTPQQY--QVLMDLIQQCTNDSSASPSPSTNHIHSVSSCSTQPSPPP 292
Query: 3208 GTILPFSSQYALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISS--HVSVCFPDGS 3035
GT+ S+ ++T SW++D+GA+ H+ +S +SN +S ++V P G
Sbjct: 293 GTVSSISTHTQIST-------SWVIDSGATDHVSSS---LSNFFTYNSINPITVKLPTGQ 342
Query: 3034 TKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTE 2855
+ TH+G V T L DVL +P FKYNL+SIS+L S +V+ +F+ ++CLIQD+ T+
Sbjct: 343 HVLATHAGVVKFTDTFYLTDVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTK 402
Query: 2854 EVKAVGEAVGSLYIFKDGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFF 2675
E + LY S I + E + LWH RLGH + L + +
Sbjct: 403 EKIGTVDVEVGLYTMTTAVVQPSILS-AIYNPEWSIQNIDLWHFRLGHLPYDKLHSMKQY 461
Query: 2674 KGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFF 2495
H +C CH +KQ +L F S H+ +SF LLHID+WGP + S+ G +F
Sbjct: 462 YPCLYSNKHF--TCNTCHHAKQKKLSFPLSHSHALQSFALLHIDIWGPCSKTSIHGHRYF 519
Query: 2494 LTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNL 2315
LTIVDD +R TWV+LM+ K ++ F+ IE QF VKV R+DNG EF+ N
Sbjct: 520 LTIVDDHTRYTWVFLMASKADTCNCVTNFISHIENQFATRVKVIRTDNGAEFSMN---NY 576
Query: 2314 FHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINR 2135
F S GIIHQ TC+ TP+QN IVERKH+HLLNV RAL+FQS+LP FW F+++HA Y+IN
Sbjct: 577 FDSKGIIHQTTCIETPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALMHATYIINC 636
Query: 2134 LPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQ 1955
+P+ L +PFE L+G + LR FGCL Y + H++K RA CVFLG+
Sbjct: 637 IPTPFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRASPCVFLGFQPHT 696
Query: 1954 KGYRLYDLDNHSLLTSRDVVFFEDSFPF-----------ASIPVP--SNXXXXXXXXXXX 1814
KGY ++L+ S+ SR+VVF+E+ FP+ S+P P SN
Sbjct: 697 KGYLTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSASSTPSLPTPFTSNPMIHDYNFYPP 756
Query: 1813 XXXXXXXTSSAPISQPESHPL-RRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDS 1637
S + P S P+ R +R PP++L D+ S+ P +SP DS
Sbjct: 757 SPSSHPPHSLSSPESPTSSPIPSRPTRSRHPPSYLRDYHMTFT-STGPSSSPGIRYPLDS 815
Query: 1636 GDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNN 1457
S+N L + F+ ++S + EP S+++A KS W+ AM E+TALE NN
Sbjct: 816 ------VISYNR---LSHPFRHFIMSISLLTEPKSYAEASKSDCWIKAMTDEITALEANN 866
Query: 1456 TWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKL 1277
TW +TSLPP K AIGCKW+YKVK DG+VER+KARLVAKG+ Q G+D+LD+F+PVAKL
Sbjct: 867 TWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVAKGYTQLEGLDFLDTFAPVAKL 926
Query: 1276 VTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYG 1097
TV L+++LA I W L QLD+NNAFLHG L+E++YM P G + G+VC L RSLYG
Sbjct: 927 TTVHLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTTPGQVCKLNRSLYG 986
Query: 1096 LKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEID 917
LKQASRQW A + Q GF S DH LF++ + ++++G L+EI
Sbjct: 987 LKQASRQWYARLSTFIMQQGFHHSSADHSLFLKFTNSACTALLVYVDDIVLAGNDLTEIH 1046
Query: 916 ALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPL 737
+ L F IKDLG YFLG+E+ARN+ L QRKY LDIL D GML C + T +
Sbjct: 1047 QITALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLCQRKYTLDILSDTGMLACCPSSTLM 1106
Query: 736 PPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAM 557
L + G PL DP +R+LIGRL+YL T PD+T++VQ LSQF + P T H AA
Sbjct: 1107 DYKAALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPDITHAVQHLSQFASKPTTYHQHAAF 1166
Query: 556 HLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKK 377
+LRYLK +P G+F SA+SSL L+++ D+DWA C+DTR+S+TGF ++LG L+SWK+KK
Sbjct: 1167 RILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAVYLGHSLISWKSKK 1226
Query: 376 QTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFH 197
Q TVSRSS+EAEYRAL S CEIQWL+YL D L P L+CDNQ+ + I N VFH
Sbjct: 1227 QATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDNQSVLQIACNQVFH 1286
Query: 196 ERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHN 17
ERTKH+EIDCHLVR +G L L VSS QLAD +TK+L + F L SKLG+ D+++
Sbjct: 1287 ERTKHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFNELNSKLGMSDIYS 1346
Query: 16 PT*GG 2
GG
Sbjct: 1347 QLAGG 1351
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 942 bits (2436), Expect = 0.0
Identities = 561/1470 (38%), Positives = 802/1470 (54%), Gaps = 32/1470 (2%)
Frame = -3
Query: 4345 GTTESEYDD---DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGK 4175
G S +DD P L+S+DHPGLS++S +L Y W +M I+L AK KLGF++G
Sbjct: 52 GVFSSGFDDPTQSPFFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGS 111
Query: 4174 MEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGP 3995
+ P E P + W + + MV SW+LNS+S + + + + A D+W D+ RF N P
Sbjct: 112 LPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLP 171
Query: 3994 LIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLP-ACESDTRKLIDERDMNRKL 3818
Y L ++I ++ QG MS+ EY+T LK LWD+L L C + ++ K+
Sbjct: 172 RTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEKAKI 231
Query: 3817 MQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMYPGNSENAAMSTRV 3638
M+FL GL+ESY VR Q++ LPS+ + Y + + Q+ N + +V
Sbjct: 232 MKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFF-----NVVAPPAAFQV 286
Query: 3637 NTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAE 3458
+ SG K + C C+ GH
Sbjct: 287 SEVSHSPITSPEIMYVQSG---------------------PNKGRPTCSFCNRVGHIAER 325
Query: 3457 CFKLHGYPDWFKQL-----KEERSRMMANSVH------SETIET--GNH--DQHKEVPQL 3323
C+K HG+P F K + + +A V + +ET GN DQ + + L
Sbjct: 326 CYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIAL 385
Query: 3322 DITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATLEN-LKPD 3146
+ L Q +S AS + + + F+ + LA N L D
Sbjct: 386 FSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCFIGI-----LAVSHNSLSSD 440
Query: 3145 SWILDTGASRHMCASSKLMSNL-VPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVL 2969
+W++D+GA+ H+ KL L I S V++ P G ++ G V +N + L +VL
Sbjct: 441 TWVIDSGATHHVSHDRKLFQTLDTSIVSFVNL--PTGPNVRISGVGTVLINKDIILQNVL 498
Query: 2968 LVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXX 2789
+P F+ NL+SIS LT + +F PS C IQDL G+ +G+LY+
Sbjct: 499 FIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVL------- 551
Query: 2788 XXXSLGIKDTESCNSSF------LLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEI 2627
DT+S S +WH+RLGH SF L L G + + C +
Sbjct: 552 --------DTQSPAISVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHV 603
Query: 2626 CHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLM 2447
CH +KQ +L F S+ + +FELLHIDVWGP++ ++ G +FLTIVDD SRATW+YL+
Sbjct: 604 CHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLL 663
Query: 2446 SHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTP 2267
K+ V T+ F+ L+E Q+ VK RSDN E E + + GI+ +C TP
Sbjct: 664 KSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTE---FYKAKGIVSFHSCPETP 720
Query: 2266 QQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLH 2087
+QN +VERKH+H+LNVARALMFQS++ +W VL A +LINR PSALL KTPFE+L
Sbjct: 721 EQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLT 780
Query: 2086 GASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTS 1907
G P YS L+ FGCL Y++ + + KF R+ CVFLGY G KGY+L DL+++ + S
Sbjct: 781 GKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHIS 840
Query: 1906 RDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISK 1727
R+V F E+ FP AS + TS P Q RI+K
Sbjct: 841 RNVEFHEELFPLASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQISPSTQISKRRITK 900
Query: 1726 PPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNV 1547
PA L D+ H SH P S S + S +H ++ N+S +
Sbjct: 901 FPAHLQDY-----HCYFVNKDDSH---PISSSLSYSQISPSHM--------LYINNISKI 944
Query: 1546 EEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTV 1367
P S+ +A S +W A+ +E+ A+E+ +TW +TSLPPGK+A+GCKWV+ VK DG++
Sbjct: 945 PIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSL 1004
Query: 1366 ERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGY 1187
ER+KAR+VAKG+ Q+ G+DY ++FSPVAK+ TV+L++ ++ K W L QLD++NAFL+G
Sbjct: 1005 ERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGD 1064
Query: 1186 LDEDIYMLPPEGYSKAKDGE-----VCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSG 1022
L+E IYM P+GY+ K VC L++S+YGLKQASRQW +F L GF +
Sbjct: 1065 LEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQH 1124
Query: 1021 HDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGME 842
DH LFVR ++I+ T +L L F +++LG +YFLG+E
Sbjct: 1125 GDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLE 1184
Query: 841 IARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIG 662
+AR ++G L+QRKY L++L A ML CK + P+ P ++L +G L D E +RRL+G
Sbjct: 1185 VARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVG 1244
Query: 661 RLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLE 482
+L+YL +TRPD+T++V +L QF ++P T+H A +L+Y+KG+ GLFYSA L L+
Sbjct: 1245 KLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLK 1304
Query: 481 AYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQW 302
Y DADW +C D+R+S TGF +F+GS L+SW++KKQ TVSRSSAEAEYRAL CE+ W
Sbjct: 1305 GYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAW 1364
Query: 301 LSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLG 122
LS L L + P+ L+ D+ AA++I NPVFHERTKH+EIDCH VR +G L L
Sbjct: 1365 LSTLLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLL 1423
Query: 121 HVSSRLQLADFFTKSLGRAAFLLLCSKLGL 32
HV ++ Q+AD TK L F L SK+ +
Sbjct: 1424 HVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 907 bits (2345), Expect = 0.0
Identities = 521/1184 (44%), Positives = 697/1184 (58%), Gaps = 19/1184 (1%)
Frame = -3
Query: 3496 CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGNHDQHKEVPQLDI 3317
C HC TGH C++ HG+P K L ++ A+ H+ T + + + + D+
Sbjct: 1 CTHCGKTGHTIEVCYQKHGFPPGSKPLSDKT----ASVNHTVTGDCKVTESTQSLESQDV 56
Query: 3316 TALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALATLENLKPDSWI 3137
QQ +AL + +QQ T G+ A T F S+ P SWI
Sbjct: 57 RFTPQQY--QALLALIQQSTTGTS-----ASCTSFPIVCSAIST-----------PSSWI 98
Query: 3136 LDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPS 2957
LD+GA+ H+ ++ S+ PI+ + V P G THSG V ++ L DVL +P
Sbjct: 99 LDSGATDHVSSTLSHFSSFSPINP-IDVKLPTGQHVSATHSGIVKFTNSFYLVDVLYIPD 157
Query: 2956 FKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXS 2777
F YNL+SIS+L S + + +F C+IQ+ T + + G LY F +
Sbjct: 158 FTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTANNIHNPSTN 217
Query: 2776 LGIKDTESCNSSFLLWHRRLGHASFPVLKHL-DFFKGLSGDTDHTLDSCEICHKSKQHRL 2600
I + LWH R+GH S L+ + F LS D SC CH KQ +L
Sbjct: 218 SIIVHPKCSIQPIDLWHFRMGHLSQERLQLMKQSFPFLSVDKSF---SCNTCHHDKQKKL 274
Query: 2599 PFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTL 2420
F S ++ + F+LLH+D+WGP S+ G +FL IVDD +R TW++LM +K++
Sbjct: 275 SFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKSETRQH 334
Query: 2419 ISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERK 2240
I F+ +ETQF VKV R+DNG EF+ + F S GIIHQ TCV TPQQNGIVERK
Sbjct: 335 IINFINQVETQFDKNVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNGIVERK 391
Query: 2239 HRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNL 2060
H+HLLNV R+L+FQ++LPS FW F++ HAA+LIN +P+ LH +PFE L+G S L
Sbjct: 392 HQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISIL 451
Query: 2059 RPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDS 1880
R FGCL Y++ H++K RA+ C+FLG+ KGY L +L H LL S++V+F ED
Sbjct: 452 RVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDH 511
Query: 1879 FP---------FAS-IPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESH----PLRRS 1742
FP F+S +P+P N SS P P+ H PLRRS
Sbjct: 512 FPSFTKPNSPSFSSPVPIPYNYADYPSFPSSSIVE-----SSEP-PPPDQHSSPPPLRRS 565
Query: 1741 SRISKPPAWLSDF----ITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYT 1574
+R +PP +L DF + HSST + P HS + SF+H
Sbjct: 566 TRPRRPPTYLQDFHGAFTSTGPHSSTGIRHPLHSFI----SYDRLSPSFHH--------- 612
Query: 1573 AFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYK 1394
++ ++S+V +P +F +A KS W+ AM E++ALE NNTWVLT+LPP K AIGC+WVYK
Sbjct: 613 -YVFSISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYK 671
Query: 1393 VKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLD 1214
VK + DG+++RYKARLVAKG+ Q G+D+ D+FSPVAKL TVRL+I+LA I L QLD
Sbjct: 672 VKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLD 731
Query: 1213 VNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGF 1034
VNN+FLHG L+E++YM P G + + G+VC LQRSLYGLKQASRQW A L Q G+
Sbjct: 732 VNNSFLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGY 791
Query: 1033 TQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYF 854
S DH LF++ S ++++G L+EI L L + F IKDLG +YF
Sbjct: 792 VPSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYF 851
Query: 853 LGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFR 674
LG+E+ARN G L QRKY LD+L D GML K TP+ L A G P D +R
Sbjct: 852 LGLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYR 911
Query: 673 RLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSS 494
RL+GRL+YL TRP + Y+VQQLSQFV++P T+H A +L YLKG+P G+F S +SS
Sbjct: 912 RLVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSS 971
Query: 493 LCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVC 314
+ L A+ D DWA C DTR+S+TGF ++LG L+SWK+KKQ TVSRSS+EAEYRAL + C
Sbjct: 972 VQLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTC 1031
Query: 313 EIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGF 134
E+QWLSYL D + + P L+CDNQ A+ I NP+FHERTKH+EIDCH+VR+ +G
Sbjct: 1032 ELQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGL 1091
Query: 133 LHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 2
L L VSS LQLAD TK L F SKLG+ ++H+ GG
Sbjct: 1092 LKLLPVSSSLQLADILTKPLSPFVFHSHYSKLGMLNIHSQLEGG 1135
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 878 bits (2268), Expect = 0.0
Identities = 481/1030 (46%), Positives = 625/1030 (60%), Gaps = 34/1030 (3%)
Frame = -3
Query: 2989 LTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLY-I 2813
L LHDVL VPSF NL+S+SQL S +CLI T+++ + LY I
Sbjct: 1 LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60
Query: 2812 FKDGXXXXXXXSLGIKDTESCNSS-FLLWHRRLGHAS----------FPVLKHLDFFKGL 2666
+D + +T S +SS +LWH RLGH S FP++ +
Sbjct: 61 IRDSATRSQLTQPFVGNTISKDSSDSVLWHHRLGHLSNSTHRIIASQFPIVSY------- 113
Query: 2665 SGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTI 2486
H C+ICH +KQ RLP S S+ ELLH D+WGPY+ S+ G +FLT+
Sbjct: 114 ----QHHDVPCDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTL 169
Query: 2485 VDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHS 2306
VDDFSR TW+ +M K++ ++ F+ IETQFQ +K R+DNG+EF + LF S
Sbjct: 170 VDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHD---LFLS 226
Query: 2305 HGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPS 2126
GIIHQ +CV TPQQNG+VERKH+H+LN ARAL FQ+SLP FW F++ HA +LINR+PS
Sbjct: 227 KGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPS 286
Query: 2125 ALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGY 1946
LL KTP++ LH P +LR FGCL+YA+ H++KF RA K V LGY G KGY
Sbjct: 287 PLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGY 346
Query: 1945 RLYDLDNHSLLTSRDVVFFEDSFPF-----ASIPVPSNXXXXXXXXXXXXXXXXXXTSSA 1781
LYDL +H SR+V F E +FPF S+ PS +
Sbjct: 347 LLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPS 406
Query: 1780 PIS-------------QPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPD 1640
P S P P R S+R+ +PP++L D+ + + + + S S + P
Sbjct: 407 PTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPH 466
Query: 1639 SGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQN 1460
S +L +Y F ++S EP +++QA K W+ AM+ EL AL+ N
Sbjct: 467 SISSTLT------YDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMN 520
Query: 1459 NTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAK 1280
TW + LP GKR IGCKWVYK+K DG++ERYKARLVAKG+ Q G+DYLD++SPVAK
Sbjct: 521 QTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAK 580
Query: 1279 LVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDG----EVCHLQ 1112
L TVR+++AL IKGW L QLDVNNAFLHG L E++YM P G S +VC L
Sbjct: 581 LTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLH 640
Query: 1111 RSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTV 932
+S+YGLKQASRQW ++ L G++ S DH LF++ S +I++G
Sbjct: 641 KSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGND 700
Query: 931 LSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKA 752
EID +K L F IKDLG RYFLG+EIAR+ G +LNQRKY L+IL D G L K
Sbjct: 701 KPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKP 760
Query: 751 AITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSH 572
+ TP P LKL + G P D +RRLIGRLLYL TRPD++Y VQQLSQFV+ P H
Sbjct: 761 SSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIH 820
Query: 571 WDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVS 392
+ AA +LRYLKGS GLFYS+ +SL L A+ D+DWASC +RKS+TGFC+FLGS L+S
Sbjct: 821 YQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLIS 880
Query: 391 WKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQ 212
W++KKQ+T+SRSS+EAEYRAL S CE+QWL YL DL S+ P +++CDN++AI++
Sbjct: 881 WRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAH 940
Query: 211 NPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGL 32
NP FHERTKH+EIDCH++R +S LHL V S QLAD FTK L +F SKLGL
Sbjct: 941 NPTFHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGL 1000
Query: 31 FDLHNPT*GG 2
+D+H+ GG
Sbjct: 1001 YDVHSSACGG 1010
>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
Length = 1125
Score = 875 bits (2262), Expect = 0.0
Identities = 474/1053 (45%), Positives = 632/1053 (60%), Gaps = 10/1053 (0%)
Frame = -3
Query: 3139 ILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVP 2960
I+D+GA+ H+ +S L+ N + V P G +T G + LNS TL +VL VP
Sbjct: 110 IIDSGATDHITSSPTLLVNSSKNTFLPPVAMPSGEQAPITSIGNLPLNSAATLKNVLGVP 169
Query: 2959 SFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXX 2780
SFK +L+S+S++T+ N FFP +C++QDL T +GE LY
Sbjct: 170 SFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGLYYLVALASEKPKT 229
Query: 2779 SLGIKDTESCNS-------SFLLWHRRLGHASFPVLKHLDFF-KGLSGDTDHTLDSCEIC 2624
T SC S S LWHRRLGH S LDF K L + ++C++C
Sbjct: 230 QTPSAATTSCRSPSSQVTSSTALWHRRLGHLSS---SRLDFMAKHLLNFHFQSNNACDVC 286
Query: 2623 HKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMS 2444
+KQ +LPF S I S R FEL+H D+WGPY SL+G +FLTIVDD+SR T V+ M
Sbjct: 287 ALAKQRQLPFSVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTXVFFMH 346
Query: 2443 HKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQ 2264
HK++ L+ F ++TQF + R DNG EF S + F G +Q +CVYTPQ
Sbjct: 347 HKSETQHLLVNFFSFVQTQFHVSIANIRVDNGGEFFSX--REFFKQKGTTYQHSCVYTPQ 404
Query: 2263 QNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHG 2084
QNG+VERKHRH+L ARA FQ+ LP FW V A ++INRLP+ LL +TPFE L+G
Sbjct: 405 QNGVVERKHRHILESARAFXFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFERLYG 464
Query: 2083 ASPTYSNLRPFGCLSYAANTH-PHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTS 1907
P+YS++R FGCL+YA N H PHK FA RA +C+FLGY GQK Y+LYDLD H + TS
Sbjct: 465 KLPSYSHIRVFGCLAYATNVHVPHK--FAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTS 522
Query: 1906 RDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHP-LRRSSRIS 1730
RDVVF E FP+ SIP PS+ S ++ P P LRRS R
Sbjct: 523 RDVVFHETIFPYESIPSPSSNSDPFLL-------------SHHLASPPPEPILRRSQRPH 569
Query: 1729 KPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSN 1550
PP L D++ N V S P P S+ P G +F + +F A +S
Sbjct: 570 HPPMALRDYVCNQVTS--PNHLPPLSSSPQKGT-RYPLCNFVSYHRYSPQHRSFTAAVSQ 626
Query: 1549 VEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGT 1370
EP+S+++A + W +AMQ EL LE N+TW LTSLPPGK+ IGC+WVYK+K DGT
Sbjct: 627 DIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPPGKKPIGCRWVYKIKXHSDGT 686
Query: 1369 VERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHG 1190
+ER+KARLVAKG+ Q G+DY D+FSP AK++ VR ++ALA + W L QLD
Sbjct: 687 IERFKARLVAKGYTQLEGIDYHDTFSPTAKMIXVRCLLALAAAQNWSLHQLDK------- 739
Query: 1189 YLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHC 1010
+M PP + + VCHL +SLYGLKQASRQW A+F +Q GF QS D+
Sbjct: 740 ------FMSPPPSLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAIQAVGFIQSKADYS 793
Query: 1009 LFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARN 830
LF + ++I+G ++ I ALK++L F IKDLG +YFLG+E++R+
Sbjct: 794 LFTCRKGKSFTALLIYVDDILITGNDVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRS 853
Query: 829 TDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLY 650
G ++QRKY L+IL D G L K P+ KL + G+ L P ++RRL+GRL+Y
Sbjct: 854 KKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKL-SDSGELLKGPSQYRRLVGRLIY 912
Query: 649 LNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCD 470
L +TRPD+TYSV LS+F+++P H +AA+ +LRYLK SP GLF+ + + L L A+ D
Sbjct: 913 LTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSD 972
Query: 469 ADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYL 290
DWA C +R+S TG+C+FLGS L+SW+TK+Q TVS SS EAEYRA+ CE+ WL L
Sbjct: 973 XDWAGCPISRRSXTGYCVFLGSSLISWRTKRQKTVSLSSXEAEYRAMAGTCCELSWLRSL 1032
Query: 289 CADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSS 110
DL + P P L+CDN AA+HI NPVFHERT+H+E+DCH +R+ + G + H++S
Sbjct: 1033 LKDLRILHPKPALLYCDNTAALHIAVNPVFHERTRHIEMDCHFIRDKIQDGSVVTKHIAS 1092
Query: 109 RLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 11
Q AD FTK LG+ F + KLG+ D+H+PT
Sbjct: 1093 TDQXADVFTKPLGKETFSTMIHKLGVLDIHSPT 1125
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 864 bits (2233), Expect = 0.0
Identities = 463/1056 (43%), Positives = 634/1056 (60%), Gaps = 11/1056 (1%)
Frame = -3
Query: 3145 SWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLL 2966
SWI+DTGA+ H+ + + + + V P+G + V T SG V L++ +TL +VL
Sbjct: 137 SWIIDTGATHHVTGDLSWLFDTIALFE-CPVGLPNGESVVATQSGSVRLSNNITLQNVLY 195
Query: 2965 VPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXX 2786
VP NLLS+SQLT + F C IQD T E+ G LY F G
Sbjct: 196 VPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQD-HTRELIGTGVRRDGLYYF-GGAEGDS 253
Query: 2785 XXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQH 2606
+ + + S + LWH+R+GH S V+K L L G + +CEIC ++K
Sbjct: 254 VQHVSVHNAAS---TLELWHKRMGHPSEKVVKLLPPVSNLKGSLNK---ACEICFRAKHX 307
Query: 2605 RLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVP 2426
R F S ++R FE +H D+WG Y H S G +FLTIVDDFSRA W+YL+ KT+V
Sbjct: 308 RDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVF 367
Query: 2425 TLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVE 2246
+ F+ +++ QF VKV +SDNGTEF K + F + GI+ Q +CV TPQQNG VE
Sbjct: 368 RMFMSFIAMVDRQFSQTVKVVQSDNGTEF--KCLLDYFSATGILFQTSCVGTPQQNGRVE 425
Query: 2245 RKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYS 2066
RKH+H+LNV RAL FQ++LP FW SVL AA+LINR PS LLH KTPFE+L G P+Y+
Sbjct: 426 RKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYA 485
Query: 2065 NLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFE 1886
+ FGCLS+A + KFA+R+ KCVFLGY G+KG++L+DLD L SRDV FFE
Sbjct: 486 AIHTFGCLSFAHDXKSKGDKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFE 545
Query: 1885 DSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPI-----------SQPESHPLRRSS 1739
D FPF + P N P S +S P+ +
Sbjct: 546 DVFPFGN-PGAVNIIPENIVPTASSAPLSPGPEVVPTVGLDSLGLDNSSNGQSAPMGKGM 604
Query: 1738 RISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLAN 1559
R P L DF+T++V + +P + P + +A + + Y FLA
Sbjct: 605 RDKFPSVLLRDFVTHTVVAESPSPATPXPQHPSGTPYPIA--HYINCDNFSVHYRKFLAT 662
Query: 1558 LSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRP 1379
+ + +P SF +A K W +M E+ ALE+N TW L LP GKRA+G +WVY+ K
Sbjct: 663 IISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFS 722
Query: 1378 DGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAF 1199
+G +ER K+RLV G HQE G+DY ++FSPVAK+ TVR +A+A K W L Q+DV+NAF
Sbjct: 723 NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAF 782
Query: 1198 LHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGH 1019
LHG L+E++YM P G+ ++ VC L++SLYGLKQA R W ++ L+ +GF QS
Sbjct: 783 LHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYS 842
Query: 1018 DHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEI 839
D+ LF + +IISG + + K YL D F +KDLG +YFLG+E+
Sbjct: 843 DYSLFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEV 902
Query: 838 ARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGR 659
AR++ G L QRKY LDI+ +AG+L K P+ +L G+ L +PE +RRL+GR
Sbjct: 903 ARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLXLANGELLSNPESYRRLVGR 962
Query: 658 LLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEA 479
L+YL +TRPD+ YSV LSQF+ P HW+AA+ ++RYLKG+P G+ A S L L+
Sbjct: 963 LIYLAVTRPDLAYSVHILSQFMXEPRIEHWEAALRVVRYLKGTPGQGILLRADSDLSLQG 1022
Query: 478 YCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWL 299
+CD+DWA+C TR+SL+G+ +FLG +SWKTKKQ TVSRSSAEAEYRA+ + CE++WL
Sbjct: 1023 WCDSDWAACPVTRRSLSGWLVFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWL 1082
Query: 298 SYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGH 119
L LG+ P + L+CD+Q+A+H+ +NPVFHERTKH+E+DCH VR+ G + +
Sbjct: 1083 KGLLLSLGVHHPKAIKLFCDSQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSY 1142
Query: 118 VSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 11
V + QLAD FTK+LG+ F L +KLG+F+ H PT
Sbjct: 1143 VPTVTQLADIFTKALGKKQFDYLLAKLGIFEPHAPT 1178
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 857 bits (2213), Expect = 0.0
Identities = 453/1020 (44%), Positives = 629/1020 (61%), Gaps = 16/1020 (1%)
Frame = -3
Query: 3013 GQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGE 2834
G + + L DVL +P F +NL+S+S+L + + F C IQD ++ +K +G
Sbjct: 1 GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQD--SQSMKMIGA 58
Query: 2833 AVGSLYIFK-DGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDF-FKGLSG 2660
A ++ ++ D + + S ++ LWH RLGH + L+ + F +
Sbjct: 59 AKHNMGLYVLDWKPKVCLYLHSVNNFHSYDND--LWHIRLGHLAHEKLQAMKSNFPFI-- 114
Query: 2659 DTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVD 2480
D D C +C+ +KQ +LPF S + F+LLH+D+WGP S+ G FFLTIVD
Sbjct: 115 DCKKNKDPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFLTIVD 174
Query: 2479 DFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHG 2300
D SR TWVY M HK++V +S F+ LIE QF VK RSDNG EF K N +H G
Sbjct: 175 DKSRHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLK---NFYHEKG 231
Query: 2299 IIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSAL 2120
I+HQ +CV TPQQNGIVERKH+H++ VARAL+ QS+LP FW ++V HA +LINR PS+
Sbjct: 232 ILHQTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSF 291
Query: 2119 LHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRL 1940
L K P+E+++ A P + ++ FGCL+YA H ++ KF R +CVFLG+ KG L
Sbjct: 292 LENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSIL 351
Query: 1939 YDLDNHSLLTSRDVVFFEDSFPFA---------SIPVPSNXXXXXXXXXXXXXXXXXXTS 1787
YDL++ SR V +FE FPF +I +P + +
Sbjct: 352 YDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPT 411
Query: 1786 SAPISQPESHP-LRRSSRISKPPAWLSDFITN--SVHSSTPMASPSHSAGPDSGDFSLAP 1616
S+P+S P +R+S+R K P++L D+ + H+S ++ P +S +L+P
Sbjct: 412 SSPVSVVPPPPFVRKSTRPRKLPSYLHDYHHTLLTTHNSPTISQPLYSIHNHISYSNLSP 471
Query: 1615 TSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSL 1436
+ AF ++S+++EP+S+ +A + W A+Q ELTALE+NNTW+LT L
Sbjct: 472 SQ-----------KAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPL 520
Query: 1435 PPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVI 1256
PP K+ +GCKWV+K+K DGT+ER+KARLVAKG+ Q +DYLD+FSPV K+ TVR ++
Sbjct: 521 PPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLL 580
Query: 1255 ALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGY--SKAKDGEVCHLQRSLYGLKQAS 1082
A+AT K W + QLDVN FLHG L E++YM PP G S + VC L +SLYGLKQAS
Sbjct: 581 AVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQAS 640
Query: 1081 RQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRY 902
RQWNA+ L GF QS D+ LF +Q ++++G +EI+ +K
Sbjct: 641 RQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSL 700
Query: 901 LDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLK 722
LD FTIKDLG +YFLGME+AR++ G L QRKY LD++ D G+L K +P+ +K
Sbjct: 701 LDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVK 760
Query: 721 LRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRY 542
L G PL DP ++RRL+GRL+YL TR D+++SV LSQF++ P H+ AA+ +L+Y
Sbjct: 761 LHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKY 820
Query: 541 LKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVS 362
+K +P GLF+ + S L L+ Y D+DWASC DTR+S+TGF FLG L+SWK+KKQ TVS
Sbjct: 821 VKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVS 880
Query: 361 RSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKH 182
+SSAEAEYRAL CE QWLSYL D GL P+ L+CDNQ+A+HI NPVFHERTK+
Sbjct: 881 KSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKN 940
Query: 181 LEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 2
+E+DCH+VR + G +HL +S+ QLAD FTK+L F + KLG+FD+H+ GG
Sbjct: 941 IELDCHIVREKLQVGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLGMFDIHSSLRGG 1000
>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1097
Score = 853 bits (2203), Expect = 0.0
Identities = 476/1132 (42%), Positives = 657/1132 (58%), Gaps = 26/1132 (2%)
Frame = -3
Query: 3496 CEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETIETGN----------HD 3347
C +C+ GH C+K HGYP FK A++ ++E + GN
Sbjct: 1 CTYCNKLGHTIETCYKKHGYPPHFKGGS-------AHNCYNEECDEGNPVLNESAGDISK 53
Query: 3346 QHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSSQYALAT 3167
K L TA E KAL L Q S + N + T P S
Sbjct: 54 GEKGENSLGFTA----EQHKALLGMLTQQQ--SHHTANHITTYELPSTSDP-QSGIVYTV 106
Query: 3166 LENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTL 2987
N+ + WILD+GA+ H+C S KL L I V + PDG G + +
Sbjct: 107 SNNMNNNIWILDSGATDHICRSIKLFQCLRRIKP-VKIHLPDGKCVTTNLCGSIFFSEDF 165
Query: 2986 TLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFK 2807
L DVL +P F +NL+S+S+L + + F C IQD ++ +K +G A ++ ++
Sbjct: 166 FLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQD--SQSMKMIGAAKHNMGLYV 223
Query: 2806 -DGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDF-FKGLSGDTDHTLDSC 2633
D I + S ++ LWH RLGH + L+ + F + D D C
Sbjct: 224 LDWKPKVCLYLHSINNFHSYDND--LWHIRLGHLAHEKLQAMKSNFPFI--DCKKNKDPC 279
Query: 2632 EICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVY 2453
+C+ +KQ +LPF S + F+LLH+D+WGP S+ G FFLTIVDD SR TWVY
Sbjct: 280 NVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKSRHTWVY 339
Query: 2452 LMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVY 2273
M HK++V +S F+ LIE QF VK RSDNG EF K N +H GI+HQ +CV
Sbjct: 340 FMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLK---NFYHEKGILHQTSCVE 396
Query: 2272 TPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFEL 2093
TPQQNGIVERKH+H++ VARAL+ QS+LP FW ++V HA +LINR PS+ L K P+E+
Sbjct: 397 TPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEI 456
Query: 2092 LHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLL 1913
++ A P + ++ FGCL+YA H ++ KF R +CVFLG+ KG LYDL++
Sbjct: 457 IYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETF 516
Query: 1912 TSRDVVFFEDSFPFA---------SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPES 1760
SR V +FE FPF +I +P + +S+P+S
Sbjct: 517 LSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPP 576
Query: 1759 HP-LRRSSRISKPPAWLSDFITN--SVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSIL 1589
P +++S+R K P++L D+ + H+S ++ P +S +L+P+
Sbjct: 577 PPFVQKSTRPRKLPSYLHDYHHTLLTTHNSPTISQPLYSIHNHISYSNLSPSQ------- 629
Query: 1588 GATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGC 1409
AF ++S+++EP+S+ +A + W A+Q ELTALE+NNTW+LT LPP K+ +GC
Sbjct: 630 ----KAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGC 685
Query: 1408 KWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWP 1229
KWV+K+K DGT+ER+KARLVAKG+ Q G+DYLD+FSPV K+ TVR ++A+AT K W
Sbjct: 686 KWVFKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWH 745
Query: 1228 LFQLDVNNAFLHGYLDEDIYMLPPEGY--SKAKDGEVCHLQRSLYGLKQASRQWNAEFCL 1055
+ QLDVN FLHG L E++YM PP G S + VC L +SLYGLKQASRQWNA+
Sbjct: 746 IHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTS 805
Query: 1054 KLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKD 875
L GF QS D+ LF +Q ++++G +EI+ +K LD FTIKD
Sbjct: 806 VLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKD 865
Query: 874 LGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPL 695
LG +YFLGME+AR++ G L QRKY LD++ D G+L K +P+ +KL G PL
Sbjct: 866 LGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPL 925
Query: 694 VDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGL 515
DP ++RRL+GRL+YL TR D+++SV LSQF++ P H+ AA+ +L+Y+K +P GL
Sbjct: 926 TDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGL 985
Query: 514 FYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYR 335
F+ + S L L+ Y D+DWASC DTR+S+TGF FLG L+SWK+KKQ TVS+SSAEAEYR
Sbjct: 986 FFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYR 1045
Query: 334 ALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHL 179
AL CE QW+SYL D GL P+ L+CDNQ+A+HI NPVFHERTKH+
Sbjct: 1046 ALAQSTCEAQWISYLLHDFGLHNFHPIVLFCDNQSALHIASNPVFHERTKHI 1097
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1433
Score = 857 bits (2213), Expect = 0.0
Identities = 527/1507 (34%), Positives = 788/1507 (52%), Gaps = 61/1507 (4%)
Frame = -3
Query: 4351 NTGTTESEYDD--DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFING 4178
N+ + ES YD+ P L+SSDHPGL++VS L G NY +W +M ++L AK KL F++G
Sbjct: 54 NSASIES-YDNAHSPYFLHSSDHPGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDG 112
Query: 4177 KMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNG 3998
+ P + W + + MV +W+LN ++ ++W+D+ RF N
Sbjct: 113 SLPRPDVSDRMFKIWSRCNSMVKTWLLNVVT--------------EMWNDLFSRFRVSNL 158
Query: 3997 PLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELAC--IMPLPACESD-TRKLIDERDMN 3827
P YQLE+ I + QGN+ + Y+TK K LW++LA ++ + C + ++L++E + +
Sbjct: 159 PRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEHVKELLEEAETS 218
Query: 3826 RKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQR---NVQLMYPGNSENA 3656
R ++QFLMGL++++ +R Q+L M P P + + Y+M + E QR N L P +
Sbjct: 219 R-IIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQV 277
Query: 3655 AMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGRGGPRRTKEEKAKLICEHCSVT 3476
S +++ V +G ++ K C +C+
Sbjct: 278 QASPIIDS-------------------------QVNMAQGSYKKPK-------CSYCNKL 305
Query: 3475 GHEKAECFKLHGYPDWFKQLKEER--SRMMANSVHSETIETGNH--DQHKEVPQLDITAL 3308
GH +C+K HGYP K K + S +A++ ET N D ++E I +
Sbjct: 306 GHLVDKCYKKHGYPPGSKWTKGQTIGSTNLASTQLQPVNETPNEKTDSYEEFSTDQIQTM 365
Query: 3307 VQQEISK---ALASKLQQGTGGS-----EYPMNFAHFTDFAGTILP-FSSQY------AL 3173
+ +K A AS + + S PM + +GT L FS+ Y ++
Sbjct: 366 ISYLSTKLHIASASPMPTTSSASISASPSVPM----ISQISGTFLSLFSNAYYDMLISSV 421
Query: 3172 ATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNS 2993
+ + P W++D+GA+ H+ + L N + + V P+ T + G + L+
Sbjct: 422 SQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLEN-TFVRLPNDCTVKIAGIGFIQLSD 480
Query: 2992 TLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYI 2813
++LH+VL +P FK+NL+S +L E + G VG+LY+
Sbjct: 481 AISLHNVLYIPEFKFNLIS----------------------ELTKELMIGRGSQVGNLYV 518
Query: 2812 FKDGXXXXXXXSLGIKDTESCNSSF----------LLWHRRLGHASFPVLKHLDFF---- 2675
++ +K T S F + WH+RLGH ++ + L
Sbjct: 519 LD---FNENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLK 575
Query: 2674 -KGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPF 2498
K ++ + C +CH SKQ L F S Q S +F+L+HID WGP++ +
Sbjct: 576 VKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTWGPFSVPT------ 629
Query: 2497 FLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQN 2318
+ ATW+YL+ +K+ V + F+ ++ TQ+Q +K RSDN E + +
Sbjct: 630 --------NDATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTD 678
Query: 2317 LFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLIN 2138
LF +HGI+ +C TP+QN +VERKH+H+LNVARAL+FQS++P +FW VL A +LIN
Sbjct: 679 LFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLIN 738
Query: 2137 RLPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITG 1958
RLP+ +L+ K+P+E L P Y +L+ FGCL Y++ + + KF RA CVFLGY G
Sbjct: 739 RLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLG 798
Query: 1957 QKGYRLYDLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAP 1778
KGY+L D++ H++ SR V+F ED FPF S + +
Sbjct: 799 YKGYKLLDIETHAVSISRHVIFHEDIFPFISSTIKDDIKDFFPLLQFPARTDDLPLEQTS 858
Query: 1777 ISQPESH-------------PLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDS 1637
I H PL S R KPP L DF H P H
Sbjct: 859 IIDTHPHQDVSSSKALVPFDPL--SKRQKKPPKHLQDF-----HCYNNTTEPFH------ 905
Query: 1636 GDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNN 1457
AF+ N++N P +S+A W DAM+ E+ A+ + N
Sbjct: 906 ---------------------AFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTN 944
Query: 1456 TWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKL 1277
TW + SLPP K+AIGCKWV+ +K DG++ERYKARLVAKG+ QE G+DY ++FSPVAKL
Sbjct: 945 TWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKL 1004
Query: 1276 VTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGE------VCHL 1115
+VR+++ LA W + QLD++NAFL+G LDE+IYM P GY+ GE +C L
Sbjct: 1005 TSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLV-GEALPPHAICRL 1063
Query: 1114 QRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGT 935
+S+YGLKQASRQW + L+ GF +S DH LF++ + ++I
Sbjct: 1064 HKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSN 1123
Query: 934 VLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCK 755
+ L F ++DLG A+YFLG+EIAR+ G + QRKY+L++L G L K
Sbjct: 1124 SDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSK 1183
Query: 754 AAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTS 575
+ PL P +KL ++G PL D +R+L+G+L+YL +TRPD+ Y+V L QF ++P +
Sbjct: 1184 PSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSV 1243
Query: 574 HWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLV 395
H A +LRYLKG+ GLFYSA L Y D+D+ SC D+R+ + +C+F+G LV
Sbjct: 1244 HLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLV 1303
Query: 394 SWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIV 215
SWK+KKQ TVS S+AEAE+RA+ G E+ WLS L D + P L+CDN AA+HIV
Sbjct: 1304 SWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIV 1363
Query: 214 QNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLG 35
N VFHERTK +E+DC+ R +SGFL V + Q+AD TK++ A F L K+G
Sbjct: 1364 NNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMG 1423
Query: 34 LFDLHNP 14
+ ++ P
Sbjct: 1424 VCNIFAP 1430
>gb|KYP39694.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1323
Score = 849 bits (2193), Expect = 0.0
Identities = 490/1425 (34%), Positives = 751/1425 (52%), Gaps = 20/1425 (1%)
Frame = -3
Query: 4225 MLIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSA 4046
M + + A+ K G++ G + P D P YD W + V SW+++S+S L+ FI +SA
Sbjct: 1 MDMRIDARNKSGYLTGATKKPSTDDPTYDNWVTENKRVKSWLIDSMSPPLMQRFICLESA 60
Query: 4045 KDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACE 3866
+WD + F D + E + +NQ + S ++ L ++EL I E
Sbjct: 61 HQIWDAALRTFYDGSD------ETCLFELNQRSFSTKQHGRPLSTYYNELLSIFQ----E 110
Query: 3865 SDTRKLIDERDMNRKLMQ-----------FLMGLHESYDQVRNQLLLMDPLPSVDKAYSM 3719
D R E +N + FL GL +DQVR ++L DP ++ Y+
Sbjct: 111 IDHRMSSSETTVNGVVQMHSSMARLRVHIFLSGLDSDFDQVRGEILRKDPKLDLESTYAY 170
Query: 3718 ALRVEKQRNVQLMYPGNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSGEWNVGRGR 3539
R +QR S+++A+ ++V
Sbjct: 171 VRREHQQRITMGRPAPTSDSSALLSQVPHSSPVNHP------------------------ 206
Query: 3538 GGPRRTKEEKA--KLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANSVHSETI 3365
P+ K+ + L+C HC +GH K C+++ GYP W+ K R ++ + ++HS +
Sbjct: 207 --PKHRKDSSSGKTLLCSHCGDSGHSKNRCYEIIGYPTWWDFTKRPRRKVSSKALHSSS- 263
Query: 3364 ETGNHDQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHFTDFAGTILPFSS 3185
PQ ++ + G L FS+
Sbjct: 264 ----DGDSSPSPQANVV------------------------------YEGILGKTLAFSA 289
Query: 3184 QYALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQV 3005
+T WI+DTGAS HM + + + P S ++ +G + +T G +
Sbjct: 290 HSRNST--------WIIDTGASDHMIHDASTLKHCFPCSKS-TITTANGGSASITGQGTI 340
Query: 3004 CLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVG 2825
L+ TLTLH VL+VPS +NLLS+S+LT N +F+P++C+ QD++T+ + G G
Sbjct: 341 TLSKTLTLHSVLVVPSLDFNLLSVSRLTSQLNCSVIFWPTFCVFQDIQTKVILGYGVRRG 400
Query: 2824 SLYIFKDGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHT 2645
+LY L + + +S +S+ LWH+RLGH SF L+ L F L + +
Sbjct: 401 NLYF------------LDVSEGDSFHSAAWLWHKRLGHLSFGYLQKL--FPHLFSNCHPS 446
Query: 2644 LDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRA 2465
C C +K HR+PF S S F+++H D+WGP S + + ++++ +D+ +R
Sbjct: 447 KFQCSTCEMAKSHRIPFYPSLNKSCIPFQVIHSDIWGPAKVPSFSHSYYYVSFIDECTRM 506
Query: 2464 TWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQK 2285
W+ L+ HK V + +F +++TQF +++F++DNG E+ + S GI HQ
Sbjct: 507 VWISLLKHKNDVFPVFQKFHNMVQTQFNTSIQIFQTDNGLEYKNGPFSEFLTSKGIKHQT 566
Query: 2284 TCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKT 2105
+C YTPQQNG+ ERK+R LL V RA +F ++PS +W +VL AAYLINR PS++L + T
Sbjct: 567 SCTYTPQQNGLAERKNRQLLEVVRASLFDMNVPSHYWGEAVLSAAYLINRTPSSVLGFLT 626
Query: 2104 PFELLHG--ASPTYSNLRP--FGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLY 1937
P + L + P NL P FGC +Y +SK A KC+F+GY QKGYR +
Sbjct: 627 PQQKLETFFSIPHVMNLEPRVFGCTAYVHVPKKLRSKLDPCAKKCIFVGYSDVQKGYRCF 686
Query: 1936 DLDNHSLLTSRDVVFFEDSFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESH 1757
D H + + +V F E ++ PS+ + P S
Sbjct: 687 DPQTHKMHVTLEVSFRESEPFYSGGVTPSSSQGEIHHIREEEFCLPLPMTPTPTS----- 741
Query: 1756 PLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAP-TSFNHSSILGAT 1580
PL S ++ P S + ++ P PD P +S+ S L +
Sbjct: 742 PLTMDSPPNQNP---SPEVFTNLPERQNKGIPKPVYEPDPRVKVKYPISSYVSSHRLSES 798
Query: 1579 YTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWV 1400
Y + LS V P+S +A + W AM E+ AL++N TW LTSLP GK+ IGCKWV
Sbjct: 799 YALTVDQLSIVSIPNSVQEALEDPRWKQAMNIEMEALQKNETWKLTSLPSGKKTIGCKWV 858
Query: 1399 YKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQ 1220
Y VK++ DG++++YKARLVAKG+ Q++GVDY D+F+PVAKL T+R++I++A + WPL Q
Sbjct: 859 YTVKLKADGSIDKYKARLVAKGYTQKYGVDYQDTFAPVAKLNTIRILISIAANRDWPLKQ 918
Query: 1219 LDVNNAFLHGYLDEDIYMLPPEGYSKA--KDGEVCHLQRSLYGLKQASRQWNAEFCLKLQ 1046
DV NAFL+G L+E++YM P G A K+ VC L+++LYGLKQ+ R W L ++
Sbjct: 919 FDVKNAFLNGDLEEEVYMEVPPGVQLAPSKESVVCKLKKALYGLKQSPRAWFGRLTLAMK 978
Query: 1045 QFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGY 866
+FG+ QS DH LF++ + ++++G + E+ L++ L F +KDLG
Sbjct: 979 KFGYKQSNSDHTLFIKHTKGKVAILIVYVDDMVLTGDDVEEMKLLEKRLAAEFEMKDLGQ 1038
Query: 865 ARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDP 686
+YFLG+EIAR+ G L+QRKYVLD+L + GML CK A TP+ L D
Sbjct: 1039 LKYFLGIEIARSEQGIFLSQRKYVLDLLSETGMLACKPADTPIEMNHSLAIYPDQIETDK 1098
Query: 685 ERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYS 506
R++RL+G+L+YL+ TRPD+ YSV +S+F++SP H A +L+YLKGSP GL +S
Sbjct: 1099 HRYQRLVGKLIYLSHTRPDIAYSVSIVSRFMHSPSEEHMTAVYRILKYLKGSPGKGLLFS 1158
Query: 505 AHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALG 326
+ C+E Y D+DWA TR+S +G+ F+ LV+W++KKQ V+RSSAEAE+R +
Sbjct: 1159 KNDRACIEGYTDSDWAGDKTTRQSTSGYFTFVEGNLVTWRSKKQKVVARSSAEAEFRGMA 1218
Query: 325 SGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLY 146
G+CE+ W+ + ADLG+ P+ L+CDN+AA+ I NPV H+RTKH+E+D H ++
Sbjct: 1219 YGICELLWIRSILADLGIKYEQPMNLFCDNKAAVEIAHNPVQHDRTKHVEVDRHFIKEKL 1278
Query: 145 KSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 11
+ + +V S QLAD TK++ F + +KLG+ D+H PT
Sbjct: 1279 DNQVIQTPYVRSEDQLADVLTKAVSGRVFEEVINKLGMIDIHAPT 1323
>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 849 bits (2194), Expect = 0.0
Identities = 535/1505 (35%), Positives = 772/1505 (51%), Gaps = 63/1505 (4%)
Frame = -3
Query: 4345 GTTESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEI 4166
G S+ ++PL L+SSDHPGLS+V+ L G+NY SW +M I+L AK KLGF++G +
Sbjct: 47 GFKVSDSGENPLLLHSSDHPGLSIVAHILDGSNYNSWSIAMRISLDAKNKLGFVDGSLLR 106
Query: 4165 PKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIY 3986
P D + W + + MV N P Y
Sbjct: 107 PSVDDSTFRIWSRCNSMVN-----------------------------------NLPRRY 131
Query: 3985 QLERDIANMNQGNMSVVEYFTKLKRLWDELACIMP--LPACESDTRKLIDERDMNRKLMQ 3812
QLE+ + + QG + + YFTK K LW++LA + C+ D K + E +++Q
Sbjct: 132 QLEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQ 191
Query: 3811 FLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMYPG--NSENAAMSTRV 3638
FLMGL + ++ +R+Q+ M P P +++ Y+M + E QR V + AA T+
Sbjct: 192 FLMGLSDDFNTIRSQIFNMKPRPGLNEIYNMLDQDESQRLVGFAAKSVPSPSPAAFQTQ- 250
Query: 3637 NTXXXXXXXXXXXXXNWSGGRGRSGEWN-VGRGRGGPRRTKEEKAKLICEHCSVTGHEKA 3461
G + N + +G ++ K C HC+ GH
Sbjct: 251 ---------------------GVLNDQNTILLAQGNFKKPK-------CTHCNRIGHTVD 282
Query: 3460 ECFKLHGYPDWFKQLKEERSRMMANSVHSETIET---------GNHDQHKEVPQLDITAL 3308
+C+K+HGYP + KE N ++ IET G+ + Q I+ L
Sbjct: 283 KCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGHETMSNDHIQQLISYL 342
Query: 3307 VQQEISKALASKLQQGTGGSEYPM-NFAHFTDFA---------------GTILPF--SSQ 3182
+ S ++ S + S P+ + + TD A GT S+
Sbjct: 343 STKLQSPSITSCFDKAIASSSNPVPSISQITDKAIASSSNPVPSISQITGTFFSLYDSTY 402
Query: 3181 YALATLE-----NLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTH 3017
Y + T L +W++D+GAS H+ L + V P+G T +
Sbjct: 403 YEMLTSSIPIETELSLRAWVIDSGASHHVTHERNLYHTYKALD-RTFVRLPNGHTVKIEG 461
Query: 3016 SGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVG 2837
+G + L L+LH+VL +P FK+NLLS+S LT++ K F C+IQ L E + G
Sbjct: 462 TGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKG 521
Query: 2836 EAVGSLYIFK-DGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFF----- 2675
VG+LYI D G S + +WH+RLGH SF + L
Sbjct: 522 SQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPK 581
Query: 2674 KGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFF 2495
+ ++ D+ H C +CH SKQ LPF S ++FEL+HID WGP++ ++ +F
Sbjct: 582 QKINKDSSH----CHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYF 637
Query: 2494 LTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNL 2315
LTIVDDFSRATW+YL+ K+ V T+ FLK++ETQ+ V RSDN E E L
Sbjct: 638 LTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFNE---L 694
Query: 2314 FHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINR 2135
F GI C TP+QN +VERKH+HLLNVARALMFQS +P ++W VL A +LINR
Sbjct: 695 FAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINR 754
Query: 2134 LPSALLHWKTPFELLHGASPTYSNLRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQ 1955
L S +++ +TP+E L P YS+L+ FGCL Y + + ++KF RA C+FLGY G
Sbjct: 755 LLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGY 814
Query: 1954 KGYRLYDLDNHSLLTSRDVVFFEDSFPFAS---------------IPVPSNXXXXXXXXX 1820
KGY+L D++ +S+ SR V+F+ED FPFAS +P P+N
Sbjct: 815 KGYKLLDIETYSVSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQS 874
Query: 1819 XXXXXXXXXTSSAPISQPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPD 1640
SS+ I P S P +S+R K P+ L DF + +T SP
Sbjct: 875 SSDAPHNHDESSSMIFVP-SEP--KSTRQRKLPSHLQDFHCYNNTPTTTKTSP------- 924
Query: 1639 SGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQN 1460
T++ S L + AF+ ++ + P +S+A W DAM +E++A +
Sbjct: 925 -----YPLTNYISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRT 979
Query: 1459 NTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAK 1280
TW + LP GK A+GCKW+ +K DG++ER+KARLVAKG+ Q+ G+D+ ++FSPVAK
Sbjct: 980 GTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAK 1039
Query: 1279 LVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEV-----CHL 1115
+VTV+++++LA W L QLD++NA L+G L+E+IYM P GYS+ + EV CH
Sbjct: 1040 MVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQGQEVSPNAKCH- 1098
Query: 1114 QRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGT 935
DH LFV+ ++I+ T
Sbjct: 1099 -------------------------------GDHTLFVKAQDGFFLVVLVYVDDILIAST 1127
Query: 934 VLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCK 755
+ L L F ++DLG ++FLG+EIARN DG L QRKYVLD+L + CK
Sbjct: 1128 TEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCK 1187
Query: 754 AAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTS 575
+ P+ P KL G L D +++RR++G+L YL LTRPD+ ++V +L+Q+ ++P
Sbjct: 1188 PSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDI 1247
Query: 574 HWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLV 395
H A +LRYLKG+ GLFY A ++ L + D+DW +C DTR+ +TGF IF+G+ LV
Sbjct: 1248 HLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLV 1307
Query: 394 SWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIV 215
SW++KKQ VS SSAEAEYRA+ E+ WL Y+ + P L+CDN+AA+HI
Sbjct: 1308 SWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAALHIA 1367
Query: 214 QNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLG 35
N VFHERTKH+E DCH VR ++G L V + QLAD TK L F SKLG
Sbjct: 1368 NNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENNSKLG 1427
Query: 34 LFDLH 20
L +++
Sbjct: 1428 LLNIY 1432
>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
Length = 1288
Score = 840 bits (2170), Expect = 0.0
Identities = 467/1052 (44%), Positives = 636/1052 (60%), Gaps = 8/1052 (0%)
Frame = -3
Query: 3142 WILDTGASRHMCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLV 2963
WI+D+GA+ H+C L + + + + V V P G T + G V L+ + L +VL V
Sbjct: 281 WIIDSGATHHVCNDISLFDSSIDVQN-VRVTLPTGITVPIDRVGSVILSKDVKLLNVLFV 339
Query: 2962 PSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXX 2783
P+F+YNLLS+S T + ++ +F P C+IQ+ ++ G G LY
Sbjct: 340 PTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSRKGQLYQLDFDSFVADK 399
Query: 2782 XSLGIKDTESCNSSFLLWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHR 2603
+ + N LWH RLGH SF LK L L D+ L C +C +KQ
Sbjct: 400 AFVAASRIPTSNI-LSLWHSRLGHPSFSRLKGLQSV--LDFDSSFDLTPCNVCPLAKQRC 456
Query: 2602 LPFISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPT 2423
LP+IS S +F+LLH+D+WGP++ S+ G FFLTIVDD+SR TWVY++ +K++V
Sbjct: 457 LPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQK 516
Query: 2422 LISQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVER 2243
I F ++ QF VK RSDN E N +HS G+IH ++CV TPQQN +VER
Sbjct: 517 YIPDFFAFVKKQFGKEVKAIRSDNAPELF---LSNFYHSLGVIHYRSCVETPQQNSVVER 573
Query: 2242 KHRHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSN 2063
KH+H+LNVARAL+F SSLP +W +L A YLINR PS L+ KTPFE+LH P YS+
Sbjct: 574 KHQHILNVARALLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSH 633
Query: 2062 LRPFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFED 1883
LR FGCL Y + +++KF+ RA VFLGY G KGY+L D++ S+ SR+
Sbjct: 634 LRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRN------ 687
Query: 1882 SFPFASIPVPSNXXXXXXXXXXXXXXXXXXTSSAP--ISQP--ESHPLRRSSRISKPPAW 1715
+ P +S P S+ +S P +SQP + P R +R+SK P++
Sbjct: 688 TNPCSS-PDISSDLFHDRVLPCIAADNDQSSSVLPRVVSQPPLQVAPSSRPTRVSKQPSY 746
Query: 1714 LSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPS 1535
L D+ + ++S + + HS F S++ L +Y F ++S + EPS
Sbjct: 747 LKDYHCSLINSVAHVET--HSTSHPIQHF----LSYDK---LSPSYKLFSLSVSIISEPS 797
Query: 1534 SFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYK 1355
SF++A + +W AM EL ALE+N T + SLP GK +GCKWVYK K + DGT+ERYK
Sbjct: 798 SFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYK 857
Query: 1354 ARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDED 1175
ARLVAKG+ Q G+DY+D+FSPVAKLVTV+L++A+A +KGW L QLDVNNAFLHG L+E+
Sbjct: 858 ARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEE 917
Query: 1174 IYMLPPEGYSKAKDG----EVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCL 1007
+YM P GY++ + VC L +SLYGLKQASRQW ++F + GF+QS DH L
Sbjct: 918 VYMKLPPGYNRKGESLPSNXVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSL 977
Query: 1006 FVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNT 827
F++ VII+ I LK L+ LF +KDLG +YFLG+EIA+++
Sbjct: 978 FIKNVDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAKSS 1037
Query: 826 DGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYL 647
G ++QRKYVLD+L D G L CKAA TP+ +KL EG L D +RRL
Sbjct: 1038 TGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRL------- 1090
Query: 646 NLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDA 467
SQF++ P H AA +LRYLKG+P +GLF+ ++S L L AY D+
Sbjct: 1091 --------------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDS 1136
Query: 466 DWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLC 287
DWA C D+R+S+TGFC+FLG+ LVSWK+KKQ VSRSSAEAEYRA+ + CEI WL L
Sbjct: 1137 DWARCPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALL 1196
Query: 286 ADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSR 107
D G+ P L+CDNQ+A+H+ +NPVFHERTKH+EIDCHLVR+ +SG L VS+
Sbjct: 1197 KDFGIDHSAPALLFCDNQSALHMAENPVFHERTKHIEIDCHLVRDKVQSGVLKPMFVSTE 1256
Query: 106 LQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 11
QLAD TK+L ++F LL K+GL ++ +P+
Sbjct: 1257 HQLADXLTKALHPSSFKLLIGKMGLKNIFSPS 1288
Score = 142 bits (358), Expect = 2e-30
Identities = 78/247 (31%), Positives = 124/247 (50%)
Frame = -3
Query: 4372 NNLGPVLNTGTTESEYDDDPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKL 4193
N G V N+ E P L++ DHPGL+LVS+ LTG NY +WR +ML+AL AK K+
Sbjct: 10 NRXGQV-NSEIVVVEDSSSPYFLHNGDHPGLNLVSNLLTGANYHTWRXAMLMALTAKNKV 68
Query: 4192 GFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRF 4013
GF++G + P Y W + + M+ SWI+N++S+++ D+ +Y DSA D+W D+ RF
Sbjct: 69 GFVDGTISRPMSHDLIYGAWNRCNSMISSWIINAVSREIADSLLYLDSACDIWRDLNDRF 128
Query: 4012 GDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDTRKLIDERD 3833
C ++ +
Sbjct: 129 NQ--------------------------------------------VCHCGGLRVWTDYQ 144
Query: 3832 MNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQRNVQLMYPGNSENAA 3653
++QFLMGL++SY Q+R Q+L+MDPLP+++K +S+ ++ E R V Y G+ +
Sbjct: 145 HREYVLQFLMGLNDSYAQIRGQILMMDPLPAINKVFSLVIQEEXHRTVGYSYSGSHNSDP 204
Query: 3652 MSTRVNT 3632
M+ N+
Sbjct: 205 MTFGSNS 211
>gb|KYP58728.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1402
Score = 835 bits (2157), Expect = 0.0
Identities = 520/1466 (35%), Positives = 753/1466 (51%), Gaps = 44/1466 (3%)
Frame = -3
Query: 4279 SLVSSQLTGNNYLSWRRSM-LIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISW 4103
++ S +L G NYL W ++ + LG E+ KE D+W++ D ++S
Sbjct: 28 TITSEKLNGKNYLDWSTAVEMWFLGQGLYDHLTKRASEVDKEVR---DEWQRTDYQLVSL 84
Query: 4102 ILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFT 3923
+ SI L+ F + D+W + + + IY+ +A + + + Y
Sbjct: 85 LWQSIEPKLMVHFRPYKTCYDIWKKARNVYAN-DIQRIYESVHGLATLRMVDNDLPTYLN 143
Query: 3922 KLKRLWDELACIMPLPACESDTRKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLP 3743
+ + DEL ++ D +++I++ D N ++ L GLH+ Y VR+Q+L +P
Sbjct: 144 RAQSTIDELKLML----VSDDPQQIINKLD-NMFMVFILQGLHKDYGSVRDQILTNPVIP 198
Query: 3742 SVDKAYSMALRVEKQRNVQLMYPGNSENAAMSTRVNTXXXXXXXXXXXXXNWSGGRGRSG 3563
+V++ +RV + + +A +S+ + G RGR
Sbjct: 199 TVEELIDRLIRVPSPEADP--HTESESSAFISSTADR----------------GSRGR-- 238
Query: 3562 EWNVGRGRGGPRRTKEEKAKLICEHCSVTGHEKAECFKLHGYPDWFKQLKEERSRMMANS 3383
GRGRG R K + L C +C GH + C+ LHG+P + + +
Sbjct: 239 ----GRGRG---RGKGGRGNLHCTYCQRDGHTRDRCYSLHGFPSKTANVAQSPTSAPELK 291
Query: 3382 VHSETIETGNH------DQHKEVPQLDITALVQQEISKALASKLQQGTGGSEYPMNFAHF 3221
+ E GNH D ++E Q T I+ A TG S ++ H
Sbjct: 292 IEPE----GNHPITLSTDDYQEYLQFKATKQASSSITVA-------HTGNSTVCLS--HS 338
Query: 3220 TDFAGTILPFSSQYALATLENLKPDSWILDTGASRHMCASSKLMSNLVPISSHVSVCFPD 3041
T W+LD+GAS H+ + L NL + + D
Sbjct: 339 TSIG---------------------PWVLDSGASDHLTGNVSLFPNLSSPRTPHHITLAD 377
Query: 3040 GSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSISQLTQSSNVKCLFFPSYCLIQDLR 2861
GS T GQ+ +L L VLLVP +NL+SIS+LT+S N F LIQD
Sbjct: 378 GSKVQATGIGQISPLPSLPLKSVLLVPGCPFNLISISKLTRSLNCVITFTSDSFLIQDRS 437
Query: 2860 TEEVKAVGEAVGSLYIFKDGXXXXXXXSLGIKDTESCNSSFLLWHRRLGHASFPVLK--- 2690
T + G LY + S S L+ HRRLGH S LK
Sbjct: 438 TGQTIGAGSESHGLYYLQPSTSTICA---------SIESPGLI-HRRLGHPSLNKLKKMV 487
Query: 2689 -HLDFFKGLSGDTDHTLDSCEICHKSKQHRLPFISSQIHSSRS-FELLHIDVWGPYNHFS 2516
HL + L CE C K R F +S + S F+++H DVWGP S
Sbjct: 488 PHLSRLESLE---------CESCQLGKHVRASFPNSINSRAMSPFDVIHSDVWGPSRIPS 538
Query: 2515 LTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLISQFLKLIETQFQAIVKVFRSDNGTEFT 2336
L G +++T +DDFSR TW++LM +++++ + F I+TQF ++++ RSDN E+
Sbjct: 539 LLGHRYYVTFIDDFSRCTWIFLMKNRSELFNIFLSFYSEIKTQFGKVIRILRSDNAKEYF 598
Query: 2335 SKECQNLFHSHGIIHQKTCVYTPQQNGIVERKHRHLLNVARALMFQSSLPSQFWPFSVLH 2156
S ++ SHGI+HQ +C +TPQQNG+ ERKHRH+++ AR L+ ++ P + W +VL
Sbjct: 599 SDCFKSFMASHGILHQSSCPHTPQQNGVAERKHRHIVDTARTLLLNANAPPKLWGDAVLT 658
Query: 2155 AAYLINRLPSALLHWKTPFELLHGASPTYS-NLRPFGCLSYAANTHPHKSKFAARAYKCV 1979
A YLINR+PS++L+ + P LL+ P YS + R FGC + + ++K +ARA KCV
Sbjct: 659 AGYLINRMPSSVLNDQVPHSLLYPLDPLYSVHPRVFGCTCFVHDLFSGRAKLSARAIKCV 718
Query: 1978 FLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFASIPVP--SNXXXXXXXXXXXXXX 1805
FLGY QKGYR Y H TS DV FFED+ F + V +
Sbjct: 719 FLGYSRVQKGYRCYSPATHRFYTSADVTFFEDTPYFIATDVSPVDSDLLSQVLPIPHFDH 778
Query: 1804 XXXXTSSAPISQPE-------SHPLRR-------SSRISKPPAWLSDFITNSVHSSTPMA 1667
T+ A + P+ HPL R S PP +D S+
Sbjct: 779 SVPPTTPATLEAPDPPALPGSDHPLHRFGITYERRSHTVVPP---NDSSIEPCDSTPASV 835
Query: 1666 SPSHSAGPDSGDFSLAPTSFNHSSI-------------LGATYTAFLANLSNVEEPSSFS 1526
S A P S D +A + S+ L TY AF++ + ++ P +
Sbjct: 836 SSPTPAPPTSVDLPIALRKGSRSTCNPHPIYNFLSYHRLSPTYYAFVSAIFSITIPKTVQ 895
Query: 1525 QACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARL 1346
+A W AM E+TAL+ N+TWVL PPGK +GC+WV+ VK+ PDG V+R KARL
Sbjct: 896 EALTHPGWRQAMIDEMTALDSNHTWVLVPPPPGKSVVGCRWVFNVKVGPDGQVDRLKARL 955
Query: 1345 VAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYM 1166
VAKG+ Q +G+DY D+FSPVAK+ +VRL +A+A ++ WPLFQLD+ NAFLHG L+E+IYM
Sbjct: 956 VAKGYTQVYGLDYSDTFSPVAKMASVRLFLAMAAMRHWPLFQLDIKNAFLHGDLEEEIYM 1015
Query: 1165 LPPEGY-SKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSX 989
P G+ ++ G VC LQ+SLYGLKQ+ R W F +Q+FG + DH +F R+S
Sbjct: 1016 DQPPGFVAQGGSGLVCKLQKSLYGLKQSPRAWFGRFSKVIQEFGMIRCETDHSVFFRRSS 1075
Query: 988 XXXXXXXXXXXXVI-ISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVL 812
I I+G I ALK++L F KDLG RYFLG+E+A++ G +
Sbjct: 1076 THRFIYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGIEVAQSKSGIAI 1135
Query: 811 NQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRP 632
+QRKY LDIL + G+ CK TP+ P +KL +G+P DP R+RRL+G+L YL +TRP
Sbjct: 1136 SQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYSDPGRYRRLVGKLNYLTMTRP 1195
Query: 631 DVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASC 452
D+++ V +SQF+NSP SHW A + +LRY+K SP GL Y+ + Y DADWA
Sbjct: 1196 DISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYNDRGHTNIVGYSDADWAGD 1255
Query: 451 VDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGL 272
R+S +G+C+F+G LVSWK+KKQ+ V+RSS EAEYRA+ CE+ WL +L +L
Sbjct: 1256 ASDRRSTSGYCVFMGGNLVSWKSKKQSVVARSSTEAEYRAMAHTTCELLWLKFLIQELQF 1315
Query: 271 SIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLAD 92
+ L CDNQ+A+++ NPVFHERTKH+E+DCH +R SG + V S+ QLAD
Sbjct: 1316 CKVGHMELVCDNQSALYLSSNPVFHERTKHIEVDCHFIREKILSGIIKTSSVCSKNQLAD 1375
Query: 91 FFTKSLGRAAFLLLCSKLGLFDLHNP 14
FTKSL +C+KL +D++ P
Sbjct: 1376 IFTKSLRGPRITYICNKLDAYDIYAP 1401
>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1115
Score = 823 bits (2127), Expect = 0.0
Identities = 460/1114 (41%), Positives = 654/1114 (58%), Gaps = 31/1114 (2%)
Frame = -3
Query: 3262 GTGGSEYPM--NFAHFTDFAG--------TILPFSSQYALATLENLKPDSWILDTGASRH 3113
G G SE P N +H T +I ++ + L L + P WI+D+GA+ H
Sbjct: 11 GGGSSETPSRANLSHSTPNQSHDSGLGSRSIFSINTTHTLNNLSHTTP--WIIDSGATDH 68
Query: 3112 MCASSKLMSNLVPISSHVSVCFPDGSTKVVTHSGQVCLNSTLTLHDVLLVPSFKYNLLSI 2933
+ S L I +++ P+GS SG + L+ +HDVL VP+F +NLLS+
Sbjct: 69 ITTSIDLFFKYSEIKP-LNINLPNGSIVQAHFSGSIQLSPDFVIHDVLFVPNFSFNLLSL 127
Query: 2932 SQLTQSSNVKCLFFPSY----CLIQDLRTEEVKAVGEAVGSLYIFKDGXXXXXXXSLGIK 2765
+L ++ + +F + C IQD+ T +K +G A K+G
Sbjct: 128 PKLLLTAPCRVIFSNQFSNILCQIQDMNT--LKMIGSAN-----LKEGLFHLDIGKERRS 180
Query: 2764 DTESCNSSFL----LWHRRLGHASFPVLKHLDFFKGLSGDTDHTLDSCEICHKSKQHRLP 2597
T + ++ + LWH RLGH S L L+ + + H+ + C++CH +KQ +L
Sbjct: 181 STNNATATPINNSNLWHFRLGHLSSNRLNVLN--QQFPFISKHSNEVCDVCHFAKQKKLS 238
Query: 2596 FISSQIHSSRSFELLHIDVWGPYNHFSLTGTPFFLTIVDDFSRATWVYLMSHKTQVPTLI 2417
+ S S+ F+L+H+D+WGP++ S+ G +FLTI+DDFSR TWV L+ K++V T +
Sbjct: 239 YSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKYFLTILDDFSRYTWVVLLKSKSEVKTHV 298
Query: 2416 SQFLKLIETQFQAIVKVFRSDNGTEFTSKECQNLFHSHGIIHQKTCVYTPQQNGIVERKH 2237
F+ L+E Q++ VK RSDNG EF ++ F+S GIIHQ +CVYTPQQNG VERKH
Sbjct: 299 HNFINLVENQYETKVKCIRSDNGPEFFLRD---FFNSKGIIHQTSCVYTPQQNGRVERKH 355
Query: 2236 RHLLNVARALMFQSSLPSQFWPFSVLHAAYLINRLPSALLHWKTPFELLHGASPTYSNLR 2057
+H+LNVARALMFQS LPS FW +++ HA +LINR+PS ++ KTPFELL+ P +S L+
Sbjct: 356 QHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVPSPIISHKTPFELLNKIPPDFSMLK 415
Query: 2056 PFGCLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSF 1877
FGCL YA+ TH + KF R+ K +F+G+ G KG+ + D++ +L SR+V+F E SF
Sbjct: 416 VFGCLCYAS-THNQRHKFEPRSRKGIFMGFQNGTKGFVILDINTREILVSRNVIFHETSF 474
Query: 1876 PF-ASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISKPPAWLSDFI 1700
PF S P +S + P +P +S PA
Sbjct: 475 PFHTSAPTSPFITQPSLTISPNPDILTTPPTSPNDTSPSQNPNPDASASPSSPA------ 528
Query: 1699 TNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGAT------------YTAFLANL 1556
+ T S S+ P S DF + P + S + + + L
Sbjct: 529 -----APTSPFHDSISSYPTSTDFDIVPHHRSSSPAIPPPRRSERDIHPPPYLSEYQYKL 583
Query: 1555 SNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPD 1376
+++ S +++ ++ W +AM EL ALE N+TW + P R IGCKWV+K+K P+
Sbjct: 584 PSLKSVQSSTRSIQNPCWREAMTCELKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPN 643
Query: 1375 GTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFL 1196
G++ERYKARLVAKG+ Q G+DY ++FSPV K+ TVR+V+ALA+I W + QLDV+NAFL
Sbjct: 644 GSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQWHIQQLDVSNAFL 703
Query: 1195 HGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHD 1016
HG L ED+YM P+G + C L++SLYGLKQ+SR+W + L G+ Q+ D
Sbjct: 704 HGDLLEDVYMELPQGLTGYSSSHSCKLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSD 763
Query: 1015 HCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIA 836
H LF ++ ++++G +EI +K L F +KDLG +YFLG+E+A
Sbjct: 764 HSLFTKRHGSAFTALLIYVDDIVLTGNSAAEITRIKHILHSNFHVKDLGQLKYFLGIEVA 823
Query: 835 RNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRL 656
++ G L QRKY LD+L D+GML CK + TP+ L+L L DP +RRL+GRL
Sbjct: 824 HSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDDASGYLDDPLPYRRLVGRL 883
Query: 655 LYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAY 476
+YL TRPD+ +S QQLSQF++ P +H AAM +LRYLK P GLF+ + + +
Sbjct: 884 VYLTNTRPDIAFSTQQLSQFMSKPTNAHHAAAMRVLRYLKSCPGTGLFFPRVCPIQVSGF 943
Query: 475 CDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLS 296
DADWA+CV +R+S+TG+C F+G+ L+SWKTKKQTTVSRSS+EAEYRAL S CE+QW+
Sbjct: 944 SDADWATCVASRRSITGYCFFIGNALISWKTKKQTTVSRSSSEAEYRALASATCELQWII 1003
Query: 295 YLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHV 116
YL DL +S+ L+CDN +A+HI NPVFHERTKHL+IDCH+VR ++G + L V
Sbjct: 1004 YLLRDLHISLSQISLLYCDNTSALHIAANPVFHERTKHLDIDCHIVREKTQAGLMKLLPV 1063
Query: 115 SSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNP 14
S QLAD FTK+L AF L SKL L ++ P
Sbjct: 1064 PSAKQLADIFTKALPPHAFKLNLSKLQLQNIFAP 1097