BLASTX nr result
ID: Rehmannia27_contig00041136
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00041136
(600 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera] 260 1e-79
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera] 256 4e-76
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana] 205 7e-58
emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera] 203 8e-58
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha... 203 5e-57
ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868... 201 2e-56
emb|CDY58610.1| BnaCnng33390D [Brassica napus] 199 4e-56
gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr... 200 4e-56
ref|XP_010545858.1| PREDICTED: uncharacterized protein LOC104818... 199 4e-56
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia... 199 1e-55
gb|KYP35109.1| Retrovirus-related Pol polyprotein from transposo... 187 1e-55
dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis th... 196 3e-55
gb|KHN05629.1| Retrovirus-related Pol polyprotein from transposo... 197 4e-55
gb|KHN45997.1| Retrovirus-related Pol polyprotein from transposo... 197 5e-55
gb|KHN30958.1| Retrovirus-related Pol polyprotein from transposo... 197 5e-55
gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposo... 197 5e-55
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 197 7e-55
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana] 196 8e-55
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana] 196 9e-55
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal... 196 9e-55
>emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera]
Length = 731
Score = 260 bits (664), Expect = 1e-79
Identities = 118/171 (69%), Positives = 141/171 (82%)
Frame = -3
Query: 514 DLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHPGISILKQIVSNNKL 335
DL G T+ KGKTKDGVYEWP+SSP+LAFSS+KTS SEWHHRLGHP ILK ++S N L
Sbjct: 251 DLXXGATLLKGKTKDGVYEWPVSSPLLAFSSVKTSSSEWHHRLGHPAFPILKHVISTNNL 310
Query: 334 CSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISNDGFKYYVIF 155
SS L +FSCNAC NKSHKLSF+ ST+ S+ PL++++SDVWTSP+IS DGFKYYVIF
Sbjct: 311 ALSSSSLLHFSCNACHCNKSHKLSFSNSTINSSHPLQILYSDVWTSPIISYDGFKYYVIF 370
Query: 154 VDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYIA 2
VDH+TKYIW YPLKQKS+V +IF RFK IVE +F++ I L+SDNGGEYI+
Sbjct: 371 VDHFTKYIWFYPLKQKSQVKDIFIRFKAIVEKHFNQNIHTLYSDNGGEYIS 421
>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
Length = 1172
Score = 256 bits (655), Expect = 4e-76
Identities = 120/185 (64%), Positives = 149/185 (80%), Gaps = 2/185 (1%)
Frame = -3
Query: 550 SLSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHP 377
++S+ LP +F KDL TG T+ KGKTKDGVYEW +SSP+LAFSS+KTS SEWHHRLGHP
Sbjct: 313 NVSITFLPSSFLVKDLRTGATLLKGKTKDGVYEWLVSSPLLAFSSVKTSSSEWHHRLGHP 372
Query: 376 GISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTS 197
ILK ++S N L SS L +FSCN C NKSHKLSF+ ST+ S++PL++++SDVWTS
Sbjct: 373 AFPILKHVISTNNLALSSSSLLHFSCNTCHCNKSHKLSFSNSTINSSRPLQILYSDVWTS 432
Query: 196 PVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNG 17
P+IS DGFKYYVIFVD++TKYIW YPLKQ S+V +IF RFK IVE +F++ I L+SDNG
Sbjct: 433 PIISYDGFKYYVIFVDYFTKYIWFYPLKQISQVKDIFIRFKAIVEKHFNQNIHTLYSDNG 492
Query: 16 GEYIA 2
GEYI+
Sbjct: 493 GEYIS 497
>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 205 bits (522), Expect = 7e-58
Identities = 103/188 (54%), Positives = 130/188 (69%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISS--PILAFSSI--KTSLSEWHHRL 386
+S+E P +F KDL TG + +G+TKD +YEWP+ S PI F+S KT+L WH RL
Sbjct: 505 VSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVPSNTPISLFASPTPKTTLPSWHSRL 564
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP +LK +VS L +S +F C+ CL NKSHKL F +T++S PLE ++SDV
Sbjct: 565 GHPSPPVLKSLVSQFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDV 624
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSPV S D FKYY+I VDHYT+Y WLYPLKQKS+V F FK +VEN F KI+ L+S
Sbjct: 625 WTSPVTSVDNFKYYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTKIRTLYS 684
Query: 25 DNGGEYIA 2
DNGGE+IA
Sbjct: 685 DNGGEFIA 692
>emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera]
Length = 786
Score = 203 bits (516), Expect = 8e-58
Identities = 95/148 (64%), Positives = 119/148 (80%)
Frame = -3
Query: 445 SPILAFSSIKTSLSEWHHRLGHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKL 266
+P++AFSS+KTS EWHHRLGHP ILK IVS+ +L SS++++F CN C NK+HKL
Sbjct: 147 APLVAFSSVKTSSFEWHHRLGHPVFPILKHIVSHYQLDLSSSLISDFLCNVCHYNKNHKL 206
Query: 265 SFAKSTLVSTQPLEVIFSDVWTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIF 86
F+ ST+VS+QPLE+IFSDVWTS VIS++GFK YVIFVDH+TKYIW Y +QKSEV ++F
Sbjct: 207 PFSTSTVVSSQPLEIIFSDVWTSLVISHNGFKNYVIFVDHFTKYIWFYSFQQKSEVKDVF 266
Query: 85 SRFKTIVENYFDRKIKVLFSDNGGEYIA 2
RFK IVE +F KI L+SDNGGEY+A
Sbjct: 267 IRFKAIVETHFQNKIHTLYSDNGGEYLA 294
>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
gi|225898008|dbj|BAH30336.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1459
Score = 203 bits (516), Expect = 5e-57
Identities = 99/188 (52%), Positives = 131/188 (69%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISSP----ILAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +G+TKD +YEWP+++P + S KT+LS WH RL
Sbjct: 418 VSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSPKTTLSSWHSRL 477
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++S L + SC+ CL NKSHKL FA S++ S+ PLE IF+DV
Sbjct: 478 GHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDV 537
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSP+IS+D +KYY++ VDHYT+Y WLYPL+QKS+V F FK +VEN F KI+ L+S
Sbjct: 538 WTSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYS 597
Query: 25 DNGGEYIA 2
DNGGE+IA
Sbjct: 598 DNGGEFIA 605
>ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868780 [Brassica rapa]
Length = 2690
Score = 201 bits (511), Expect = 2e-56
Identities = 100/187 (53%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPIS----SPILAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +GKTK+ +YEWP+ + LA S KTSL+ WH RL
Sbjct: 1097 VSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPLPPTKITTYLASPSPKTSLASWHSRL 1156
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP + ILK +VS L S+ FSC CL+NKSHKL F +T+ S +PL+ ++SDV
Sbjct: 1157 GHPSLPILKTLVSQFSLPISDSI-KQFSCVDCLTNKSHKLPFHTNTIKSDKPLQYLYSDV 1215
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSP++S+D +KYY+IFVDH+T+Y WLYPLKQKS+V F FK +VEN F +I L+S
Sbjct: 1216 WTSPIVSSDHYKYYLIFVDHFTRYTWLYPLKQKSQVRETFIAFKALVENRFKTRIVTLYS 1275
Query: 25 DNGGEYI 5
DNGGEYI
Sbjct: 1276 DNGGEYI 1282
>emb|CDY58610.1| BnaCnng33390D [Brassica napus]
Length = 856
Score = 199 bits (506), Expect = 4e-56
Identities = 98/188 (52%), Positives = 131/188 (69%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPI----SSPILAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +G+TKD +YEWP+ S + A S KT+LS WH RL
Sbjct: 193 VSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVQTTRSISLFASPSPKTTLSSWHARL 252
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP ++L+ +VS+ L ++ C+ CL NKSHKL F +T+ S +PLE ++SDV
Sbjct: 253 GHPSNTVLQTLVSHFSLPLSTTSHKQSPCSHCLINKSHKLPFYSNTIHSQKPLEYVYSDV 312
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSP+IS D FKYY++FVDHYT+Y WLYPLKQKS+V + F FK IVEN F K+ L+S
Sbjct: 313 WTSPLISVDNFKYYLVFVDHYTRYTWLYPLKQKSQVRDTFIAFKAIVENRFQTKLMTLYS 372
Query: 25 DNGGEYIA 2
+NGGE+IA
Sbjct: 373 ENGGEFIA 380
>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
polyprotein from Arabidopsis arenosa [Arabidopsis
thaliana]
Length = 1194
Score = 200 bits (509), Expect = 4e-56
Identities = 95/188 (50%), Positives = 130/188 (69%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISSPI----LAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +G+TKD +YEWP++ P ++ KT L+ WH RL
Sbjct: 369 VSVEFFPAHFQVKDLKTGVQLLQGRTKDELYEWPVNPPKPSSHFTTTTPKTDLTSWHSRL 428
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP +S LK +VS L +S+ F+C+ CL NK+HKL F +T+ STQPLE ++ D+
Sbjct: 429 GHPSLSTLKVVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDL 488
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSP++S D FKYY++ VDHYT+Y W YP+KQKS V ++F FK +V N F RKI L+S
Sbjct: 489 WTSPIVSIDNFKYYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLYS 548
Query: 25 DNGGEYIA 2
DNGGE+IA
Sbjct: 549 DNGGEFIA 556
>ref|XP_010545858.1| PREDICTED: uncharacterized protein LOC104818098, partial [Tarenaya
hassleriana]
Length = 883
Score = 199 bits (506), Expect = 4e-56
Identities = 95/179 (53%), Positives = 130/179 (72%), Gaps = 5/179 (2%)
Frame = -3
Query: 523 NFKDLCTGETIAKGKTKDGVYEWP-ISSPIL----AFSSIKTSLSEWHHRLGHPGISILK 359
N KD TG +A+G +GVYEWP +SSP L AFSS+K+++ WH RLGHP + IL
Sbjct: 328 NVKDRTTGAILAQGTLHNGVYEWPTLSSPSLSSVSAFSSVKSTVCAWHSRLGHPSVEILH 387
Query: 358 QIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISND 179
+++ L S SS +F C C NKS+KLSF S+++S++PLEV+FSDVW SP+ S +
Sbjct: 388 KVLCRLSLPSSSSSSLSFHCEFCSINKSYKLSFFSSSVMSSRPLEVVFSDVWMSPIESFN 447
Query: 178 GFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYIA 2
G++YYV+FVDH+T+Y WLYPLK+KS V++IF RFK++VE F K+ L+SDN GEY+A
Sbjct: 448 GYRYYVVFVDHFTRYTWLYPLKRKSHVSDIFVRFKSLVETRFQSKLMSLYSDNDGEYVA 506
>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268438|emb|CAB80958.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1474
Score = 199 bits (506), Expect = 1e-55
Identities = 96/188 (51%), Positives = 129/188 (68%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISSP----ILAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +G+TKD +YEWP+++P + S KT+LS WH RL
Sbjct: 413 VSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPKATALFTTPSPKTTLSSWHSRL 472
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++S L S +C+ C NKSHKL F+ S++ ST PLE IFSDV
Sbjct: 473 GHPSSSILNTLISKFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDV 532
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
W SP++S D +KYY++ VDH+T+Y WLYPL+QKS+V + F FK +VEN F KI+ L+S
Sbjct: 533 WMSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVENRFQAKIRTLYS 592
Query: 25 DNGGEYIA 2
DNGGE+IA
Sbjct: 593 DNGGEFIA 600
>gb|KYP35109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 321
Score = 187 bits (475), Expect = 1e-55
Identities = 92/179 (51%), Positives = 125/179 (69%), Gaps = 3/179 (1%)
Frame = -3
Query: 532 LPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKT-SLSEWHHRLGHPGISIL 362
LP +F K+L G+T G DG+Y WP +SP + S++T S + WHHRLGHP SI
Sbjct: 118 LPNSFHVKNLQMGQTTHIGSCVDGLYLWPANSPFV--HSVRTESSASWHHRLGHPSSSIF 175
Query: 361 KQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISN 182
I + L S+ CN+C +KSHKL F +STL S+ PLE+IFSDVWTSPV+S
Sbjct: 176 TFIQQHFSLGSNK--FQQSDCNSCQISKSHKLPFHESTLKSSYPLEIIFSDVWTSPVLSI 233
Query: 181 DGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYI 5
DG +YY +FVDH+T+YIWLYP+++KS+V +F +FK++VEN+F IK+ ++DNGGEYI
Sbjct: 234 DGLRYYCMFVDHFTRYIWLYPIRRKSDVQTLFPKFKSLVENFFHHNIKIFYTDNGGEYI 292
>dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis thaliana]
Length = 847
Score = 196 bits (499), Expect = 3e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISS--PILAFSS--IKTSLSEWHHRL 386
+S+E P +F KDL TG + +GKTKD +YEWPI+S P+ F+S K + S WH RL
Sbjct: 377 VSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARL 436
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++SN L + SC+ CL NKS+K+ F++ST+ ST+PLE I+SDV
Sbjct: 437 GHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV 496
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
W+SP++S+D ++YYVIFVDH+T+Y WLYPLKQKS+V F FK ++EN F +I +S
Sbjct: 497 WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 556
Query: 25 DNGGEYIA 2
DNGGE++A
Sbjct: 557 DNGGEFVA 564
>gb|KHN05629.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 1248
Score = 197 bits (502), Expect = 4e-55
Identities = 96/178 (53%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Frame = -3
Query: 532 LPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHPGISILK 359
LP +F KDL TG T KG DG+Y WP +SP + ++S S WHHRLGHP SI K
Sbjct: 324 LPNSFYVKDLQTGHTTHKGSCVDGLYLWPATSPSVHTVRTESSAS-WHHRLGHPSSSIFK 382
Query: 358 QIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISND 179
+ + L S+ + + CN+C +KSHKL F +STL S PLE+IFSDVWTSP++S D
Sbjct: 383 FVQKHFSLGSNKFLQSG--CNSCQISKSHKLPFHESTLKSCYPLEIIFSDVWTSPILSID 440
Query: 178 GFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYI 5
G +YY +FVDH+T+YIWLYP+K+KS+V IF +FK++VEN++ KIK+L++DNGGEYI
Sbjct: 441 GLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENFYHHKIKILYTDNGGEYI 498
>gb|KHN45997.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 1235
Score = 197 bits (501), Expect = 5e-55
Identities = 96/178 (53%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
Frame = -3
Query: 532 LPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHPGISILK 359
LP +F KDL TG T KG DG+Y WP +SP + ++S S WHHRLGHP SI K
Sbjct: 322 LPNSFYVKDLQTGHTTHKGSCVDGLYLWPATSPSVHTVRTESSAS-WHHRLGHPSSSIFK 380
Query: 358 QIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISND 179
+ + L S+ CN+C +KSHKL F +STL S PLE+IFSDVWTSP++S D
Sbjct: 381 FVQKHFSLGSNK--FPQSDCNSCQISKSHKLPFHESTLKSCYPLEIIFSDVWTSPILSID 438
Query: 178 GFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYI 5
G +YY +FVDH+T+YIWLYP+K+KS+V IF +FK++VEN++ KIK+L++DNGGEYI
Sbjct: 439 GLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENFYHHKIKILYTDNGGEYI 496
>gb|KHN30958.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 1237
Score = 197 bits (501), Expect = 5e-55
Identities = 96/178 (53%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
Frame = -3
Query: 532 LPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHPGISILK 359
LP +F KDL TG T KG DG+Y WP +SP + ++S S WHHRLGHP SI K
Sbjct: 324 LPNSFYVKDLQTGHTTHKGSCVDGLYLWPATSPSVHTVRTESSAS-WHHRLGHPSSSIFK 382
Query: 358 QIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISND 179
+ + L S+ CN+C +KSHKL F +STL S PLE+IFSDVWTSP++S D
Sbjct: 383 FVQKHFSLGSNK--FPQSDCNSCQISKSHKLPFHESTLKSCYPLEIIFSDVWTSPILSID 440
Query: 178 GFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYI 5
G +YY +FVDH+T+YIWLYP+K+KS+V IF +FK++VEN++ KIK+L++DNGGEYI
Sbjct: 441 GLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENFYHHKIKILYTDNGGEYI 498
>gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Glycine soja]
Length = 1294
Score = 197 bits (501), Expect = 5e-55
Identities = 96/178 (53%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
Frame = -3
Query: 532 LPENF--KDLCTGETIAKGKTKDGVYEWPISSPILAFSSIKTSLSEWHHRLGHPGISILK 359
LP +F KDL TG T KG DG+Y WP +SP + ++S S WHHRLGHP SI K
Sbjct: 335 LPNSFYVKDLQTGHTTHKGSCVDGLYLWPATSPSVHTVRTESSAS-WHHRLGHPSSSIFK 393
Query: 358 QIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDVWTSPVISND 179
+ + L S+ CN+C +KSHKL F +STL S PLE+IFSDVWTSP++S D
Sbjct: 394 FVQKHFSLGSNK--FPQSDCNSCQISKSHKLPFHESTLKSCYPLEIIFSDVWTSPILSID 451
Query: 178 GFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFSDNGGEYI 5
G +YY +FVDH+T+YIWLYP+K+KS+V IF +FK++VEN++ KIK+L++DNGGEYI
Sbjct: 452 GLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENFYHHKIKILYTDNGGEYI 509
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 197 bits (500), Expect = 7e-55
Identities = 92/187 (49%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISSP----ILAFSSIKTSLSEWHHRL 386
+S+E P +F KDL TG + +G+T++ +YEWP++ + A S KT LS WH RL
Sbjct: 395 VSVEFFPAHFQVKDLNTGARLLQGRTRNELYEWPVNQKSITILTASPSPKTDLSSWHQRL 454
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP + ILK +VS+ L +++ C+ C NKSHKL F +T+VS+QPLE +++DV
Sbjct: 455 GHPALPILKDVVSHFHLPLSNTIPKQLPCSDCSINKSHKLPFFTNTIVSSQPLEYLYTDV 514
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
WTSP IS D +KYY++ VDH+T+Y W+YPLKQKS+V ++F FK +VEN F +I+ L+S
Sbjct: 515 WTSPCISVDNYKYYLVIVDHFTRYTWMYPLKQKSQVKDVFVAFKALVENRFQSRIRTLYS 574
Query: 25 DNGGEYI 5
DNGGE+I
Sbjct: 575 DNGGEFI 581
>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
Length = 1048
Score = 196 bits (499), Expect = 8e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISS--PILAFSS--IKTSLSEWHHRL 386
+S+E P +F KDL TG + +GKTKD +YEWPI+S P+ F+S K + S WH RL
Sbjct: 407 VSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARL 466
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++SN L + SC+ CL NKS+K+ F++ST+ ST+PLE I+SDV
Sbjct: 467 GHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV 526
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
W+SP++S+D ++YYVIFVDH+T+Y WLYPLKQKS+V F FK ++EN F +I +S
Sbjct: 527 WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 586
Query: 25 DNGGEYIA 2
DNGGE++A
Sbjct: 587 DNGGEFVA 594
>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
Length = 1431
Score = 196 bits (499), Expect = 9e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISS--PILAFSS--IKTSLSEWHHRL 386
+S+E P +F KDL TG + +GKTKD +YEWPI+S P+ F+S K + S WH RL
Sbjct: 377 VSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARL 436
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++SN L + SC+ CL NKS+K+ F++ST+ ST+PLE I+SDV
Sbjct: 437 GHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV 496
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
W+SP++S+D ++YYVIFVDH+T+Y WLYPLKQKS+V F FK ++EN F +I +S
Sbjct: 497 WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 556
Query: 25 DNGGEYIA 2
DNGGE++A
Sbjct: 557 DNGGEFVA 564
>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
thaliana]
Length = 1466
Score = 196 bits (499), Expect = 9e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Frame = -3
Query: 547 LSLEKLPENF--KDLCTGETIAKGKTKDGVYEWPISS--PILAFSS--IKTSLSEWHHRL 386
+S+E P +F KDL TG + +GKTKD +YEWPI+S P+ F+S K + S WH RL
Sbjct: 412 VSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARL 471
Query: 385 GHPGISILKQIVSNNKLCSDSSVLANFSCNACLSNKSHKLSFAKSTLVSTQPLEVIFSDV 206
GHP SIL ++SN L + SC+ CL NKS+K+ F++ST+ ST+PLE I+SDV
Sbjct: 472 GHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV 531
Query: 205 WTSPVISNDGFKYYVIFVDHYTKYIWLYPLKQKSEVTNIFSRFKTIVENYFDRKIKVLFS 26
W+SP++S+D ++YYVIFVDH+T+Y WLYPLKQKS+V F FK ++EN F +I +S
Sbjct: 532 WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 591
Query: 25 DNGGEYIA 2
DNGGE++A
Sbjct: 592 DNGGEFVA 599