BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00040532
         (1566 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   325   e-107
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       331   e-106
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]   347   e-106
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   340   e-101
ref|XP_010108259.1| Retrovirus-related Pol polyprotein from tran...   315   1e-99
gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposo...   270   3e-79
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     279   4e-79
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]   265   9e-78
ref|XP_010099335.1| hypothetical protein L484_000113 [Morus nota...   253   5e-77
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   243   1e-75
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   238   3e-68
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   245   8e-68
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   244   4e-67
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   231   5e-67
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]         235   1e-65
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   237   3e-65
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   209   5e-65
gb|KRY06569.1| Retrovirus-related Pol polyprotein from transposo...   228   8e-64
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   211   1e-63
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     211   1e-63

>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  325 bits (834), Expect(2) = e-107
 Identities = 176/277 (63%), Positives = 208/277 (75%), Gaps = 6/277 (2%)
 Frame = -2

Query: 1475 YPKGTRGGLFYDPQEKKVIVSTNAVFLENDYIENFRPRSKVVLEELLSDEIRPQPTRVVG 1296
            YPKGTRGGLFY  QE KV VSTNA FLE +Y+ +F+P SKVVLEELL+DEI P PT VV 
Sbjct: 39   YPKGTRGGLFYSAQENKVFVSTNATFLEYNYMADFKPISKVVLEELLADEISPTPTTVVE 98

Query: 1295 EITKNTTIPDQNVMTPRRSGRVIRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKE 1116
               K TT  D     PRRSGR IR PIRYR+  EA VAV DG DDDPL+F+  M+D D+E
Sbjct: 99   RQRKETTAQDLTPPPPRRSGREIRLPIRYRENGEAQVAVTDGSDDDPLTFKMAMDDVDRE 158

Query: 1115 RWLKSMNQEW-SLCTPTLYGFL*IR--LKMSG---IYKRKKCVDGKVETFKARLVAKGYT 954
            +W ++M  E  S+ + +++  + +   +K  G   IYK K+  +GKVETFKARLVAKG+T
Sbjct: 159  KWQEAMKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFT 218

Query: 953  QKEGVDYEETFSPIAMLKSIRILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GF 774
            QKEGVDYE+TFSP+ MLKSIRILLSI A  DYEIW+MDVKT FLNG L++ IYM QP GF
Sbjct: 219  QKEGVDYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGF 278

Query: 773  VAEGQEQKVCKLLRSIYGLKQASRSWNHRFDEMIKSW 663
            V + QEQKVCKL RSIYGLKQASRSWN  F+E IKS+
Sbjct: 279  VVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSY 315



 Score = 92.4 bits (228), Expect(2) = e-107
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
 Frame = -3

Query: 670 SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
           S GF+Q++ EPCVYKQI   KV            I N+VE L+ VK W A QFQMKDL +
Sbjct: 314 SYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGE 373

Query: 490 RIMFLEFEWFK------ITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPKR 329
               L  +  +      +  +   +  K+L+       K+  +P R    L  E   PK 
Sbjct: 374 ASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQ-CPKT 432

Query: 328 IV*RHLRRKEHETHSLCLYKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVKNLLKY 155
                  R+     ++    Y +LCTR  I +A+G+ S++QSNP + H + VK++LKY
Sbjct: 433 PQDEEKMRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKY 490



 Score = 89.0 bits (219), Expect = 4e-15
 Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
 Frame = -2

Query: 497 G*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLK 318
           G A+Y+LGI M ++ KN+LLALSQA+YIDK+ +   M++SKKG LP+ +GV LSKE C K
Sbjct: 372 GEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPK 431

Query: 317 APQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SR---NVSLDNSQEPSQI--- 156
            PQ+E      P    V +++Y A    R      V + SR   N  LD+      I   
Sbjct: 432 TPQDEEKMRRVPYASAVGSLMY-AMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKY 490

Query: 155 CLRSRCLSI*VVDRKIDDC--TDSDF*SDKDTRKSISGSVYIL 33
             R+R   +    R++     TDSDF SD+D+RKS S +V+ L
Sbjct: 491 LRRTRNYMLVYSGRELIPIGYTDSDFQSDRDSRKSTSEAVFTL 533


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  331 bits (848), Expect(2) = e-106
 Identities = 175/310 (56%), Positives = 222/310 (71%), Gaps = 9/310 (2%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            +FRIWGCPAHVL     KL PRS++ LFVGYPK +RGGLFY PQE KV VSTNA FLE D
Sbjct: 666  YFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFLEED 725

Query: 1385 YIENFRPRSKVVLEELLSDEI-RPQP-TRVVGEIT-KNTTIPDQNVMTPRRSGRVIRPPI 1215
            +  N +PRSK+VL+E+  +   +P   T+VV +    + +   Q +  PRRSGRV+  P 
Sbjct: 726  HXRNHQPRSKIVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRSGRVVHQPN 785

Query: 1214 RYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSMNQEW-SLCTPTLYGFL*IR-- 1044
            RY  + E  + + D   +DPL+++Q M D D+++W+K+MN E  S+   +++  + +   
Sbjct: 786  RYLGLVETQIIIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSD 845

Query: 1043 ---LKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSIN 873
               +    IYKRK+   GKV+TFKARLVAKGYTQKEGVDYEETFSP+AMLKSIRILLSI 
Sbjct: 846  VKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIA 905

Query: 872  ACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWN 693
               +YEIW+MDVKT FLNG L++ IYM QP GF+A+ QEQKVCKL +SIYGLKQASRSWN
Sbjct: 906  TFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWN 965

Query: 692  HRFDEMIKSW 663
             RFD  IKS+
Sbjct: 966  IRFDTAIKSY 975



 Score = 84.3 bits (207), Expect(2) = e-106
 Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
 Frame = -3

Query: 670  SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
            S GF+Q+VDEPCVYK+I +  VA           I N+VE L  VK W   QFQMKDL +
Sbjct: 974  SYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGE 1033

Query: 490  RIMFLEFEWFK------ITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPKR 329
                L  +  +      +  +   +  K+L   +    K+ ++P R    L  E   PK 
Sbjct: 1034 AQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQ-CPKT 1092

Query: 328  IV*RHLRRKEHETHSLCLYKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVKNLLKY 155
                   R    + ++    Y +LCTR  I Y++GI S++QSNP   H   VKN+LKY
Sbjct: 1093 PQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKY 1150



 Score = 95.5 bits (236), Expect = 5e-17
 Identities = 71/163 (43%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
 Frame = -2

Query: 497  G*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLK 318
            G A Y+LGI +V+N KNK LA+SQASYIDK+    +MQ+SKKG LP  +G+ LSKE C K
Sbjct: 1032 GEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPK 1091

Query: 317  APQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SR---NVSLDNSQEPSQIC-- 153
             PQE       P    V +++Y A    R      V I SR   N   D+      I   
Sbjct: 1092 TPQEVEDMRNIPYSSAVGSLMY-AMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKY 1150

Query: 152  ---LRSRCLSI*VVDRKIDDCTDSDF*SDKDTRKSISGSVYIL 33
                R+  L     D  +   TDSDF SDKD RKS SGSV+ L
Sbjct: 1151 LRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTL 1193


>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
          Length = 961

 Score =  347 bits (889), Expect = e-106
 Identities = 207/392 (52%), Positives = 246/392 (62%), Gaps = 6/392 (1%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            H RIWGCPAHVLKGKTGKL  RSEV +FVGYPKGTRG                       
Sbjct: 471  HIRIWGCPAHVLKGKTGKLESRSEVCMFVGYPKGTRG----------------------- 507

Query: 1385 YIENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYR 1206
               +F+PRSKVVLEELL+DEI P PT VV    K TT  D     PR SGR IR PIRY 
Sbjct: 508  ---DFKPRSKVVLEELLADEISPTPTTVVERQRKETTARDLTPPPPRCSGREIRLPIRYC 564

Query: 1205 QIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSMNQEW-SLCTPTLYGFL*IR--LKM 1035
            +  EA VAV DG DDD L+F+  M+D D+E W ++M  E  S+ + +++  + +   +K 
Sbjct: 565  ENGEAQVAVTDGSDDDSLTFKMAMDDVDRETWQEAMKLEIESMYSNSVWELVDLPEGIKP 624

Query: 1034 SG---IYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACL 864
             G   IYKRK+  +GKVETFKARLVAKG+TQKEGVDYE+TFSP+AMLKSIRILLSI A  
Sbjct: 625  IGCKWIYKRKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVAMLKSIRILLSIAAYY 684

Query: 863  DYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHRF 684
            DYEIW+MDVKTTFLNG L++ IYM Q  GFV + QEQKVCKL RSIYGLKQASRSWN RF
Sbjct: 685  DYEIWQMDVKTTFLNGHLEETIYMVQSEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIRF 744

Query: 683  DEMIKSWF*PKC**ALCIQADQ*W*SGNFSDLRR*HSTN*E*SRNVSCG*RLVCQAIPNE 504
             E IKS+          +   + W +  F                              +
Sbjct: 745  SEAIKSY--------ESLSQVKNWLANQFQ----------------------------MK 768

Query: 503  RFG*ANYVLGI*MVQNHKNKLLALSQASYIDK 408
              G A+Y+LGI M ++ KN+LLALSQA+YIDK
Sbjct: 769  DLGEASYILGIQMTRDRKNRLLALSQAAYIDK 800


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  340 bits (871), Expect = e-101
 Identities = 230/587 (39%), Positives = 308/587 (52%), Gaps = 76/587 (12%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            H R+WGCP HVLKGKT KL  + E   F+GYP+GT+G LFY P++KK+IVSTNA +LE D
Sbjct: 606  HVRMWGCPTHVLKGKTDKLETKIEFCFFIGYPRGTKGSLFYSPKDKKIIVSTNAHYLEED 665

Query: 1385 YIENFRPRSKVVLEELLSDEI---------RPQPTRVVGEI----------------TKN 1281
            YI N  P+S++ L EL  D I          P+P  V  +I                T +
Sbjct: 666  YIRNHIPKSQLALNELRGDTIPARIFPSEHEPEPFMVRADIPLPQRSGRNVSGPEFETFD 725

Query: 1280 TTIP---DQNVMTP----------------------------------------RRSGRV 1230
             ++P   ++NV  P                                        RRSGR 
Sbjct: 726  ISLPVGDEENVEAPIHVPFEEHIDEVQDVVPPVINLPALQPQQDEGVAEQPVVLRRSGRT 785

Query: 1229 IRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSMNQEWSLCTPTLYGFL* 1050
             RPP+RY  + EA   + + V+ +P+    +             NQ W L  P   G   
Sbjct: 786  RRPPVRYTLLGEAFDRIPEEVNTEPMESMYS-------------NQVWELVEPPK-GVKP 831

Query: 1049 IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINA 870
            I  K   IYK+K+ +DGKV+T+KA+LVAKGYTQKEG+DYEETFSP+AMLKSIRILLSI A
Sbjct: 832  IGCKW--IYKKKRGIDGKVQTYKAKLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAA 889

Query: 869  CLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNH 690
              DYEIW+MDVKT FLNG LD+ IYM+Q  GF+  GQE  +CKL RSIYGLKQASRSWN 
Sbjct: 890  YFDYEIWQMDVKTAFLNGSLDECIYMKQLEGFITNGQEHLLCKLNRSIYGLKQASRSWNT 949

Query: 689  RFDEMIKSWF*PKC**ALCIQADQ*W*SGNFSDLRR*HSTN*E*SRNVSCG*RLVCQAIP 510
             FD+ IK++   +C    C+     W                        G ++V     
Sbjct: 950  CFDQTIKTFGFDQCHDVSCVYKK--W-----------------------NGKKVVFLRFD 984

Query: 509  NERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKE 330
             +  G A ++LGI +++N K +++ LSQA YID +     MQ SKKG+LP  +G+VLSK+
Sbjct: 985  MKYLGEAAHILGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLSKD 1044

Query: 329  DCLKAPQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNVSLDNSQEPSQI-- 156
               K P+E  +  A P    V +++Y A    R      V + SR  S    +  + +  
Sbjct: 1045 QSPKTPEEIESMKAVPYASAVGSLMY-AMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKH 1103

Query: 155  ----CLRSRCLSI*VVDRKIDDC--TDSDF*SDKDTRKSISGSVYIL 33
                  R+R   +      +     TDSDF SD+D+RKS SG+V++L
Sbjct: 1104 IIKYLKRTRDYMLVFQSENLVPIGYTDSDFQSDQDSRKSTSGNVFVL 1150


>ref|XP_010108259.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
            notabilis] gi|587931412|gb|EXC18499.1| Retrovirus-related
            Pol polyprotein from transposon TNT 1-94 [Morus
            notabilis]
          Length = 414

 Score =  315 bits (807), Expect = 1e-99
 Identities = 168/262 (64%), Positives = 194/262 (74%), Gaps = 9/262 (3%)
 Frame = -2

Query: 1544 PAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYIENFRP 1365
            PAHVL+ KTGKL PRSEVY+FVGYP+GTRGGLFY   ++KV VSTNA FLE+DY+ +F+P
Sbjct: 155  PAHVLRQKTGKLEPRSEVYIFVGYPQGTRGGLFYSQADQKVFVSTNATFLEHDYMIDFKP 214

Query: 1364 RSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYRQIEEANV 1185
            RSK+VLEELLSDEIRPQPTRVVG + + T +PDQ +M PRRS RV R P RY    EA +
Sbjct: 215  RSKIVLEELLSDEIRPQPTRVVGPLRQKTIVPDQTLMAPRRSRRVSRLPDRY--TGEAQI 272

Query: 1184 AVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTPTLYGFL*IRLKMS 1032
               D   +DP +FR  M+DS+KE W  +M         N  W L      G   IR K  
Sbjct: 273  VTADDGKEDPSTFRDAMDDSNKEEWQAAMKLEIESMHSNSVWQL-VDLPEGVKPIRCKW- 330

Query: 1031 GIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACLDYEI 852
             IYKRK+ VDGKVET+KARLVAKGYTQKEGVDYEETFSP+AMLKSIRILL+I A  DYEI
Sbjct: 331  -IYKRKRGVDGKVETYKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLAIAAYFDYEI 389

Query: 851  WRMDVKTTFLNGQLDKEIYMQQ 786
            W+MDVKT FLNG LD+ IYM Q
Sbjct: 390  WQMDVKTPFLNGYLDETIYMDQ 411


>gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 676

 Score =  270 bits (690), Expect = 3e-79
 Identities = 183/507 (36%), Positives = 257/507 (50%), Gaps = 69/507 (13%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            H ++WGC A+V K +  KL  RS+   F+GYPK T    F+ P + KV V+  A FLE +
Sbjct: 162  HIKVWGCHAYVKKLQIDKLEARSQKCRFIGYPKETMRYYFFHPFDHKVFVARGATFLERE 221

Query: 1385 YIENFRPRSKVVLEELL-------------------------------SDEIRPQPTRVV 1299
            ++       ++ L+E+                                S  +  +PT V 
Sbjct: 222  FLAEGCHGKEIDLDEIQEASETTNAQEHEMENEQPFFDVLKLMQRLPSSTNLVEEPTIVQ 281

Query: 1298 GEITKNTTIPDQNVMTPRRSGRVIRPPIR-----YRQIEEANVAVFDGV-------DDDP 1155
             ++ + T   DQ  +   +    I+ P+R     +R     N+ V D         DDDP
Sbjct: 282  EQVNEPTLEQDQQPLNEVQRDCTIQVPLRRSSREHRAPNRLNLLVHDDTTYEVDHSDDDP 341

Query: 1154 LSFRQTMEDSDKERWLKSMNQE---------WSLCTPTLYGFL*IRLKMSG---IYKRKK 1011
             S+ + +   D E+W ++M  E         W+L   +        +K  G   +YK+K 
Sbjct: 342  NSYEEAIRSLDHEKWREAMESEMESMKINKVWTLVEASK------DIKPIGCKWVYKKKI 395

Query: 1010 CVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACLDYEIWRMDVKT 831
              DGKVET+KARLVAKGY QKEG+DY+ETFSP+AMLKSIRILL+I A  DYEIW+MDVKT
Sbjct: 396  GADGKVETYKARLVAKGYRQKEGIDYDETFSPMAMLKSIRILLAIAAYYDYEIWQMDVKT 455

Query: 830  TFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHRFDEMIKSWF*PK 651
            TFLNG+L +++YM QP GF+      KVCKL RSIYGLKQASRSWN +F++ IK++   +
Sbjct: 456  TFLNGELKEDVYMTQPEGFITSSDHHKVCKLERSIYGLKQASRSWNIQFNKTIKNFDFVR 515

Query: 650  C**ALCI--------------QADQ*W*SGNFSDLRR*HSTN*E*SRNVSCG*RLVCQAI 513
            C    C+                D     GN  D+    ST    S   S          
Sbjct: 516  CEEEPCVYKRVSGSTIIFLMLYVDDILLIGN--DIPSLQSTKIWLSEQFSM--------- 564

Query: 512  PNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSK 333
              +  G A Y+LGI + ++   ++L LSQ+ YI+ +     M++SK+GYLP   GV LS+
Sbjct: 565  --KDLGEAAYILGIKIYRDRSKRMLGLSQSMYINTILKRYNMENSKRGYLPIGTGVTLSR 622

Query: 332  EDCLKAPQEERT*DAFPMPLQVYNIVY 252
            EDC K  +E    +  P    V  I+Y
Sbjct: 623  EDCPKTLEERTRMNRVPYASAVGAIMY 649


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  279 bits (714), Expect = 4e-79
 Identities = 198/542 (36%), Positives = 282/542 (52%), Gaps = 33/542 (6%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC A+V + ++ KL P+S+    VGYPK T+G  FY+ ++ KV V+ + VFLE +++
Sbjct: 663  KIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFL 722

Query: 1379 ENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYRQI 1200
                   +V LEE+         T    +  ++   P  +   PRRS R  R P RY   
Sbjct: 723  SRRVSGIRVHLEEVQETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGA 782

Query: 1199 EEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTPTLYGFL*I 1047
            E+ ++ + D  +D+P ++ + M   D  +WL +M         NQ W+L  P   G   I
Sbjct: 783  EQRDILLLD--NDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPP-DGVKTI 839

Query: 1046 RLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINAC 867
              K   ++K+K  +DG V  +KARLVAKG+ Q +GVDY+ETFSP+AMLKSIRI+L+I A 
Sbjct: 840  ECKW--LFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAY 897

Query: 866  LDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHR 687
             DYEIW+MDVKT FLNG L +++YM QP GFV      K+CKL +SIYGLKQASRSWN R
Sbjct: 898  FDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIR 957

Query: 686  FDEMIKSWF*PKC**ALCI--------------QADQ*W*SGNFSDLRR*HSTN*E*SRN 549
            FDE+IK +   K     C+                D     GN  D+    S       +
Sbjct: 958  FDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGN--DIPMLESVKSSLKNS 1015

Query: 548  VSCG*RLVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKG 369
             S            +  G A Y+LGI + ++   +L+ LSQ++YIDK+     M DSKKG
Sbjct: 1016 FSM-----------KDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKG 1064

Query: 368  YLPT*YGVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNV 189
            +LP  +G+ LSK  C +   E       P    + +I+Y A    R   +  +S  SR  
Sbjct: 1065 FLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMY-AMLCTRPDVSYALSATSRYQ 1123

Query: 188  SLDNSQEPSQI-----CLRSRCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGSVY 39
            S       + +      LR R   + +V     D  +   TD+ F +DKD  +S SG V+
Sbjct: 1124 SDPGEGHWTAVKNILKYLR-RTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVF 1182

Query: 38   IL 33
             L
Sbjct: 1183 CL 1184


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score =  265 bits (677), Expect = 9e-78
 Identities = 178/436 (40%), Positives = 240/436 (55%), Gaps = 31/436 (7%)
 Frame = -2

Query: 1247 RRSGRVIRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------N 1095
            RRSGR  RPP+RY  + EA   + + V+ +P+ +   ++D D ++WL +M         N
Sbjct: 80   RRSGRTRRPPVRYTXLGEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEMESMYSN 139

Query: 1094 QEWSLCTPTLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSP 915
            Q W L  P   G   I  K   IYK+K+ +DGK +T+KA LVAKGYTQKEG+DYEETFSP
Sbjct: 140  QVWELVEPPK-GVKPIGCKW--IYKKKRGIDGKXZTYKAXLVAKGYTQKEGIDYEETFSP 196

Query: 914  IAMLKSIRILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLL 735
            +AMLKSIRILLSI A  DYEIW+MDVKT FLNG LD+ IYM+Q  GF+  GQE  +CKL 
Sbjct: 197  VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQXEGFIXNGQEHLLCKLN 256

Query: 734  RSIYGLKQASRSWNHRFDEMIKSWF*PKC**ALCI--------------QADQ*W*SGNF 597
            RSIYGLKQASRSWN  FD+ IK++   +C    C+                D     GN 
Sbjct: 257  RSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVDDILLIGNC 316

Query: 596  SDLRR*HSTN*E*SRNVSCG*RLVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASY 417
              +             ++     + Q    +  G A ++LGI +++N K K++ LSQA Y
Sbjct: 317  IGM-------------LTSVKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALY 363

Query: 416  IDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY*ARYL 237
            ID +     MQ SKKG+LP  +G+ LSK+   K P+E  +  A P    V +++Y A   
Sbjct: 364  IDTILNRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMY-AMLC 422

Query: 236  IRDRDNQPVSI*SRNVSLDNSQEPSQI------CLRSRCLSI*VVDRKIDDC--TDSDF* 81
             R      V + SR  S    +    +        R+R   +      +     TDSDF 
Sbjct: 423  TRPDICFAVGMVSRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQSENLXPIGYTDSDFQ 482

Query: 80   SDKDTRKSISGSVYIL 33
            SD+D+RKS SG+V+ L
Sbjct: 483  SDQDSRKSTSGNVFXL 498


>ref|XP_010099335.1| hypothetical protein L484_000113 [Morus notabilis]
            gi|587889088|gb|EXB77770.1| hypothetical protein
            L484_000113 [Morus notabilis]
          Length = 294

 Score =  253 bits (645), Expect = 5e-77
 Identities = 139/267 (52%), Positives = 171/267 (64%), Gaps = 9/267 (3%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            H RIWGCP HVL+ KTGKL  RSE+ LFVGYPKGT+G +FY P ++K  VSTNA FLE D
Sbjct: 48   HTRIWGCPTHVLRKKTGKLASRSELCLFVGYPKGTKGYIFYSPTDQKTFVSTNAHFLEED 107

Query: 1385 YIENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYR 1206
            +++N +PRS++VLEEL   +    P                  + PR SGRV+R P RY 
Sbjct: 108  FVKNMKPRSRLVLEELTEPQQELTP------------------IEPRHSGRVVRQPDRYM 149

Query: 1205 QIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSMNQE---------WSLCTPTLYGFL 1053
               +A  AV D   D+P+S+ Q M  S+   W ++MN E         W+L  P   G  
Sbjct: 150  SYGDALTAVSDLDVDEPVSYSQAMASSEANLWHEAMNTEIQSMYKNGIWTLVDPP-EGVK 208

Query: 1052 *IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSIN 873
             I  K   IY++K+  DG VETFKAR+VAKGY QKEG+DYE+TFS +AMLKSIRI LSI 
Sbjct: 209  PIGCKW--IYRKKRGPDGNVETFKARVVAKGYAQKEGIDYEDTFSLVAMLKSIRIRLSIT 266

Query: 872  ACLDYEIWRMDVKTTFLNGQLDKEIYM 792
            A LDYEIW+MDVKT FLNG  D+ IYM
Sbjct: 267  AALDYEIWQMDVKTAFLNGNPDERIYM 293


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  243 bits (621), Expect(3) = 1e-75
 Identities = 138/315 (43%), Positives = 191/315 (60%), Gaps = 17/315 (5%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC  +V + ++ KL P+S+   FVGY K T+G  FY+ +E KV V+ + VFLE ++I
Sbjct: 359  KIWGCEVYVKRLQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFI 418

Query: 1379 ENFRPRSKVVLEEL------LSDEIRPQPTR--VVGEITKNTTIPDQNVMTPRRSGRVIR 1224
                  S V LEE+       S   +PQ     VV ++ +    P    +  RRS R+ R
Sbjct: 419  SRKDSGSMVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEALASRRSKRIRR 478

Query: 1223 PPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTP 1071
             P RY  +      +    +D+P  + + M   D E+WL +M         NQ W+L  P
Sbjct: 479  TPARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQVWNLVDP 538

Query: 1070 TLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIR 891
               G   I+ K   ++K+   VDG V  +KARLVAKG+ Q +GVDY+ETFSP+AMLKSIR
Sbjct: 539  P-DGVKAIKCKW--VFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIR 595

Query: 890  ILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQ 711
            I+L+I A  DYEIW+MDVKT  LNG LD+++YM QP GFV     +K+CKL +SIYGLK+
Sbjct: 596  IVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKK 655

Query: 710  ASRSWNHRFDEMIKS 666
            ASRSWN RFD+++K+
Sbjct: 656  ASRSWNIRFDKVVKA 670



 Score = 52.0 bits (123), Expect(3) = 1e-75
 Identities = 25/67 (37%), Positives = 39/67 (58%)
 Frame = -2

Query: 482 VLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLKAPQEE 303
           +LGI + ++   +L+ LSQ++YIDK+     MQ+SKKG+LP  +G+ L K  C +   E 
Sbjct: 733 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQNSKKGFLPMSHGINLGKNQCPQTTDER 792

Query: 302 RT*DAFP 282
                 P
Sbjct: 793 NKMSVIP 799



 Score = 39.3 bits (90), Expect(3) = 1e-75
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -3

Query: 670 SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDL 497
           +LGF ++ +EPCVYK+I+   +            I N++ ML +VK      F MKDL
Sbjct: 670 ALGFVKNEEEPCVYKKISGSALVFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDL 727


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  238 bits (607), Expect(3) = 3e-68
 Identities = 137/311 (44%), Positives = 188/311 (60%), Gaps = 13/311 (4%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRS--EVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            +IWGC  +V + ++ KL P+S  +   FVGYPK T+G  FY+ +E KV V+ + VFLE  
Sbjct: 212  KIWGCEVYVKRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKK 271

Query: 1385 YIENFRPRSKVVLEELLSDEIRPQPTR--VVGEITKNTTIPDQNVMTPRRSGRVIRPPIR 1212
            +I   +    +   E  S   +PQ     VV ++ +    P       RRS R+ R P R
Sbjct: 272  FISR-KDSGSMETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPAR 330

Query: 1211 YRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTPTLYG 1059
            Y  +      +    +D+P ++ + M     E+WL +M         NQ W+L  P L  
Sbjct: 331  YALLTTGQCDILLLGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDP-LDS 389

Query: 1058 FL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLS 879
               I  K   ++K+K  VDG V  +KARLVAKG+ Q +GV+Y+ETFSP+AMLKSIRI+L+
Sbjct: 390  VKAIECKW--VFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLA 447

Query: 878  INACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRS 699
            I A  DYEIW+MDVKT FL+G LD+++YM QP GFV     +K+CKL +SIYGLKQASRS
Sbjct: 448  IAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRS 507

Query: 698  WNHRFDEMIKS 666
            WN RFDE+IK+
Sbjct: 508  WNIRFDEVIKA 518



 Score = 42.0 bits (97), Expect(3) = 3e-68
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = -3

Query: 670 SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
           +LGF ++ +EPCVYK+IN   +            I N++ ML +VK      F MKDL +
Sbjct: 518 ALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGE 577

Query: 490 RIMFL 476
               L
Sbjct: 578 AAYIL 582



 Score = 30.0 bits (66), Expect(3) = 3e-68
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 497 G*ANYVLGI*MVQNHKNKLLALSQASYIDK 408
           G A Y+LGI + ++   +L+ LSQ++YI+K
Sbjct: 576 GEAAYILGIRIYRDRSKRLIGLSQSTYINK 605


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  245 bits (626), Expect = 8e-68
 Identities = 179/523 (34%), Positives = 266/523 (50%), Gaps = 14/523 (2%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC  +V + ++ KL P+S+   FVGYPK T+G  FY+ +E KV V+ + VFLE ++I
Sbjct: 459  KIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEFI 518

Query: 1379 ENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYRQI 1200
                  S +   +L                             P+  G  +R        
Sbjct: 519  LRKNSGSMLWKHQLHEG--------------------------PKGYGVHLRE------- 545

Query: 1199 EEANVAVFDGVDDDPLSFRQTMED-SDKERWLKSM--NQEWSLCTPTLYGFL*IRLKMSG 1029
                       +D+P ++ + M      +  ++SM  NQ W+L  P   G   I  K   
Sbjct: 546  -----------NDEPTTYEEAMVGLGAMKSEIESMHVNQVWNLVDPP-DGVKAIEWKW-- 591

Query: 1028 IYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACLDYEIW 849
            ++K+K  VDG V  +KARLVAKG+ Q +GVDY+ETFS +AMLKSI+I+L+I A  DYEIW
Sbjct: 592  VFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKSIQIVLAITAYFDYEIW 651

Query: 848  RMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHRFDEMIK 669
            +MDVKT F+NG +D+++YM Q  GFV     +K+CKL +SIYGLKQASRSWN RFDE++K
Sbjct: 652  QMDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVK 711

Query: 668  SWF*PKC**ALCIQADQ*W*SGNFSDLRR*HSTN*E*SRNVSCG*RLVCQAIPNERFG*A 489
            +W   K   +L +  D     GN   +     T+             +  +   +  G A
Sbjct: 712  AWALSKTKKSLVLYVDDILLIGNDIPMLESVKTS-------------LKNSFSMKDLGEA 758

Query: 488  NYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLKAPQ 309
             Y+LGI + ++   +L+ LSQ++YIDK+     MQDSKKG+LP  +G+ L K  C +   
Sbjct: 759  AYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTD 818

Query: 308  EERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNVSLDNSQEPSQICLRS----- 144
            E       P    + +I+Y A        +  +S  SR  S  +  E   I +++     
Sbjct: 819  ERNKMSVIPYASAIGSIMY-AMLCTHPDVSYALSATSRYQS--DPGESHWIAVKNILKYL 875

Query: 143  -RCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGSVYIL 33
             R   + +V     +  +   TD+ F +DKD  +S SG V+ L
Sbjct: 876  RRTKDMFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCL 918


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  244 bits (624), Expect = 4e-67
 Identities = 189/544 (34%), Positives = 277/544 (50%), Gaps = 33/544 (6%)
 Frame = -2

Query: 1565 HFRIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLEND 1386
            H ++WGC A V +    KL  RSE   F+GYPK + G LFY P E  V V+  AVF E +
Sbjct: 636  HIKVWGCEAFVRRETQDKLAERSERCFFLGYPKQSFGYLFYRPSEDVVFVARRAVFRERE 695

Query: 1385 YIENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTP-RRSGRVIRPPIRY 1209
             I      S + LEE+              +  +   +   +V  P RRSGRV  PP  Y
Sbjct: 696  LIFKEDSGSTIDLEEIQESSDDATLGETSNQHEEEVPVGPTDVSLPLRRSGRVSMPPEFY 755

Query: 1208 --RQIEEANVAVFDGVD---DDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTP 1071
                  + +  V D      D+P ++++ +   +  +W ++M         NQ W+L   
Sbjct: 756  GFHITSDGDTFVSDRTLINLDEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNL-VD 814

Query: 1070 TLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIR 891
             + G   +  K   I+K+K  +DGKV TFKARLVAKG+TQ  GVDY+ETFSP+A +KSIR
Sbjct: 815  NVPGRKTVGCKW--IFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIR 872

Query: 890  ILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQ 711
            I+L+I A  DYEIW+MDVKT FLNG+L +++YM QP GFV      KVCKL RSIYGLKQ
Sbjct: 873  IMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQ 932

Query: 710  ASRSWNHRFDEMIKSWF*PKC**ALCIQADQ*W*SGN-------FSDLRR*HSTN*E*SR 552
            ASRSWN  F E +K +   +     C+       SG+       + D       +    +
Sbjct: 933  ASRSWNLCFHEKVKEFGFSRSEDESCVYVKA---SGSIVTFLVLYVDDILLMGNDIPTLQ 989

Query: 551  NVSCG*RLVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKK 372
            +V      + +    +  G A Y+LGI ++++ K +L+ LSQ +Y++K+     M++SKK
Sbjct: 990  DVKA---WLGKCFAMKDLGEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKK 1046

Query: 371  GYLPT*YGVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRN 192
            G LP      LSK       +E       P    V +I+Y A    R      +S+ SR 
Sbjct: 1047 GELPIQSNAKLSKTQSPSTDEEIAEMSRVPYASAVGSIMY-AMTCTRPDVAFALSMVSRY 1105

Query: 191  VSLDNSQEPSQICLRS------RCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGS 45
                N      I +++      R  ++ +V       +++  TD+ F +D+D+ +S SG 
Sbjct: 1106 QG--NPGRAHWIAVKNILKYLRRTKNMVLVLGGSDTLRVEGYTDASFQTDRDSGRSQSGW 1163

Query: 44   VYIL 33
            V++L
Sbjct: 1164 VFLL 1167


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  231 bits (588), Expect(2) = 5e-67
 Identities = 135/310 (43%), Positives = 183/310 (59%), Gaps = 11/310 (3%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC ++  +  T KL P+S+   FVGYPK T+G  FY P + KV V  N  FLE +++
Sbjct: 307  KIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFL 366

Query: 1379 ENFRPRSKVVLEELLSDEIRPQPTRVVGEITKNTTIPDQNVMTP--RRSGRVIRPPIRYR 1206
                  SKV+LEE+   +    PT           + +  ++ P  RRS R    P R+R
Sbjct: 367  SKGTSGSKVLLEEVREPQ-GDVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRHEPDRFR 425

Query: 1205 QIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLK---------SMNQEWSLCTPTLYGFL 1053
                 + A+F    D+P S+ + +   D ++WL+         S N+ W+L      G  
Sbjct: 426  DWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTL-VDLPDGVK 484

Query: 1052 *IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIRILLSIN 873
             I  K   I+K+K  +DG ++ +KA LVAKGY Q  G+DY+ET+SP+AMLKSIRILL+  
Sbjct: 485  PIECKW--IFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATA 542

Query: 872  ACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWN 693
            A  DYEIW+MDVKT FLNG L++ +YM QP GF      +KVCKL RSIYGLKQASRSWN
Sbjct: 543  AHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWN 602

Query: 692  HRFDEMIKSW 663
             RF+E IK +
Sbjct: 603  LRFNEAIKEF 612



 Score = 53.9 bits (128), Expect(2) = 5e-67
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
 Frame = -3

Query: 661  FDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDKRIM 482
            F ++ +EPCVYK+ +   VA           + N++ +L +VK W    F MKD+ +   
Sbjct: 614  FIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAY 673

Query: 481  FLEFEWFK------ITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPKRIV* 320
             L    ++      I  +   +  K+L        K+  IP      L  ++  P     
Sbjct: 674  ILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLS-KTQCPSTHDE 732

Query: 319  RHLRRKEHETHSLCLYKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVKNLLKY 155
            R    K     ++    Y +L TR  +  A+ +TS++QS+P   H I+V+N+ KY
Sbjct: 733  RERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKY 787



 Score = 60.1 bits (144), Expect = 6e-06
 Identities = 31/82 (37%), Positives = 46/82 (56%)
 Frame = -2

Query: 497 G*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLK 318
           G A Y+LGI + ++  NK++ LSQ +YIDK+     M DSKKG++P  +G+ LSK  C  
Sbjct: 669 GEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPS 728

Query: 317 APQEERT*DAFPMPLQVYNIVY 252
              E       P    + +I+Y
Sbjct: 729 THDERERMSKIPYASAIGSIMY 750


>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
          Length = 746

 Score =  235 bits (599), Expect = 1e-65
 Identities = 156/467 (33%), Positives = 230/467 (49%), Gaps = 31/467 (6%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWG   +V + ++ KL P+S+   FVGYPK  +G  FY+ +E KV ++ + VFL  ++I
Sbjct: 293  KIWGYEVYVKRLQSDKLTPKSDKCFFVGYPKEKKGYYFYNREEGKVFIARHGVFLGKEFI 352

Query: 1379 ENFRPRSKVVLEEL------LSDEIRPQPTR--VVGEITKNTTIPDQNVMTPRRSGRVIR 1224
                  S V LEE+      +S   +PQ     V  ++ +    P    +  +R  R+ R
Sbjct: 353  SRKDSGSMVGLEEIQETPENVSRSTQPQQAEQDVAQQVEQVVVEPVVEALASQRFERIRR 412

Query: 1223 PPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTP 1071
             P RY  +      +    +D+P ++ +TM   D E+WL +M         NQ W+L  P
Sbjct: 413  TPARYALLTTGQHDILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDP 472

Query: 1070 TLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIR 891
                                                G+ Q +GVDY+ETFSP+ MLKSIR
Sbjct: 473  P----------------------------------DGFRQIQGVDYDETFSPVTMLKSIR 498

Query: 890  ILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQ 711
            I+L+I A  DYEIW+MDVKT FLNG LD+++YM QP GFV     +K+CKL +SIYGLKQ
Sbjct: 499  IVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQ 558

Query: 710  ASRSWNHRFDEMIKSWF*PKC**ALCI--------------QADQ*W*SGNFSDLRR*HS 573
            ASRSWN RFDE++K+    K     C+                D     GN   + +   
Sbjct: 559  ASRSWNIRFDEVVKASGFVKNEEEPCVYKKINRSALGFLILYVDDILLIGNDIPMLKSAK 618

Query: 572  TN*E*SRNVSCG*RLVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH* 393
            T+             +  +   +  G A Y+LGI + ++   +L+ LSQ++YI+KM    
Sbjct: 619  TS-------------LKNSFSMKDLGEATYILGIRIYRDRSKRLIGLSQSTYINKMLKRF 665

Query: 392  RMQDSKKGYLPT*YGVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY 252
             MQDSKKG+L   +G+ L K  C +   E+      P    + +I+Y
Sbjct: 666  NMQDSKKGFLSMSHGINLGKNQCPQTIDEQNKKSVIPYASAIGSIMY 712


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  237 bits (604), Expect = 3e-65
 Identities = 176/537 (32%), Positives = 264/537 (49%), Gaps = 28/537 (5%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC  +V + ++ KL P+S+ Y FVGYPK T+G  FY+ +E KV V+ + VFLE ++I
Sbjct: 334  KIWGCEVYVKRLQSDKLTPKSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFI 393

Query: 1379 ENFRPRSKVVLEEL------LSDEIRPQPTR--VVGEITKNTTIPDQNVMTPRRSGRVIR 1224
                    V LEE+       S   +PQ     VV ++ +    P       RRS R+ R
Sbjct: 394  STKDSGIMVRLEEIQETPKNASTSTQPQQDEQDVVQQVEQVVVEPVVEAPASRRSERIWR 453

Query: 1223 PPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLCTP 1071
             P RY  +      +    +D P ++ + M   D ++WL +M         NQ W+L  P
Sbjct: 454  TPARYALLTTGQRDILLLDNDKPTTYEEAMVGPDSKKWLGAMKSEIESMHVNQVWNLVDP 513

Query: 1070 TLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSIR 891
               G   I  K   ++K+K  +DG V  +KARLVAKG+ Q + VDY+ TFS + MLKSIR
Sbjct: 514  P-DGVKGIECKW--VFKKKTDLDGNVHIYKARLVAKGFRQIQSVDYDGTFSSVGMLKSIR 570

Query: 890  ILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLKQ 711
            I+L+I A  DYEIW+MDVKT FLN  LD++                      +SIYGLKQ
Sbjct: 571  IILAIPAYFDYEIWQMDVKTAFLNENLDED----------------------KSIYGLKQ 608

Query: 710  ASRSWNHRFDEMIKSWF*PKC**ALCIQADQ*W*SGNFSDLRR*HSTN*E*SRNVSCG*R 531
            ASRSWN RFDE++K+    K     C+       SG+  DLR                  
Sbjct: 609  ASRSWNIRFDEVVKALGFVKNEEEPCVYKKI---SGSALDLRE----------------- 648

Query: 530  LVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*Y 351
                         A Y+L I + ++   +L+  SQ++YIDK+     MQDSKKG+LP  +
Sbjct: 649  -------------AAYILSIRIYRDRSRRLIG-SQSTYIDKVLKRFNMQDSKKGFLPLSH 694

Query: 350  GVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNVSLDNSQ 171
            G+ L K  C +   E       P    + +I+Y    ++  R + P ++ + +    +  
Sbjct: 695  GINLGKNQCPQTTDERNKMSVIPYASAIGSIMY---AMLCTRPDVPYALSATSQYQSDPG 751

Query: 170  EPSQICLRS------RCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGSVYIL 33
            E   I +++      R   + ++     +  +++ TD+ F +DKD  +S SG V+ L
Sbjct: 752  ESHWIAVKNILKYLRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCL 808


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  209 bits (533), Expect(2) = 5e-65
 Identities = 130/317 (41%), Positives = 180/317 (56%), Gaps = 19/317 (5%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            +IWGC  +V + ++ KL P+S    FVGYPK T+G   Y+ +E KV V+ + VFL+ ++I
Sbjct: 1139 KIWGCEVYVKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFI 1198

Query: 1379 ENFRPRSKVVLEEL------LSDEIRPQPTR--VVGEITKNTTIPDQNVMTPRRSGRVIR 1224
                  S V LEE+       S   +PQ     VV ++ +    P       RRS R+ R
Sbjct: 1199 SRKDSGSIVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIRR 1258

Query: 1223 PPIRYR--QIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSM---------NQEWSLC 1077
             P RY    I + ++ + D  +D+P ++ + M   D E+W  +M         NQ W+L 
Sbjct: 1259 TPARYALLTIGQRDILLLD--NDEPTTYEEAMVGPDSEKWPGAMKSEIESMHVNQVWNLV 1316

Query: 1076 TPTLYGFL*IRLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKS 897
             P   G   I  K   ++K+K  VDG V  +KARLVAKG+ Q +GVDY+ETFSP+AMLKS
Sbjct: 1317 DPP-DGVKAIECKW--VFKKKTYVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKS 1373

Query: 896  IRILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGL 717
            I+I+L+I A  DYEIW+MDVKT FLNG LD++                      +SIYGL
Sbjct: 1374 IQIVLAIAAYFDYEIWQMDVKTAFLNGNLDED----------------------KSIYGL 1411

Query: 716  KQASRSWNHRFDEMIKS 666
            KQASRSWN RFDE++K+
Sbjct: 1412 KQASRSWNIRFDEVVKA 1428



 Score = 68.6 bits (166), Expect(2) = 5e-65
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
 Frame = -3

Query: 670  SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
            +LGF ++ +EPCVYK+I+   +            I N++ ML +VK      F MKDL +
Sbjct: 1428 ALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGE 1487

Query: 490  RIMFLEFEWFKITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPKRIV*RHL 311
                +    ++          K LI +  S   + K+ +R   Q   + F P      H 
Sbjct: 1488 AAYIMGIRIYRDRS-------KRLIGLSQSTYID-KVLKRFNMQDSKKGFLPMSHGINHG 1539

Query: 310  RRK------EHETHSLCLYK-------YTILCTRLGI*YAIGITSQFQSNPEMFH*IIVK 170
            + +      E    S+  Y        Y +LCTR+ + YA+  TS++QS+P   H I VK
Sbjct: 1540 KNQCPQTTDERNKMSVIPYAWAIGSIMYAMLCTRIDVSYALSATSRYQSDPGESHWIAVK 1599

Query: 169  NLLKY 155
            N+LKY
Sbjct: 1600 NILKY 1604


>gb|KRY06569.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trichinella patagoniensis]
          Length = 618

 Score =  228 bits (580), Expect = 8e-64
 Identities = 160/466 (34%), Positives = 233/466 (50%), Gaps = 30/466 (6%)
 Frame = -2

Query: 1559 RIWGCPAHVLKGKTGKLHPRSEVYLFVGYPKGTRGGLFYDPQEKKVIVSTNAVFLENDYI 1380
            ++WGC A+V K +  KL P+SE  +F+GYPK T G  FY   E K+ V+ N  FLE +++
Sbjct: 130  KVWGCDAYVEKLQPDKLEPKSEKCVFIGYPKETVGYTFYHRSEGKIFVAKNGSFLEKEFL 189

Query: 1379 ENFRPRSKVVLEELL-----------SDEIRPQPTRVVGEITKNT-TIPDQNVMTPRRSG 1236
                   KV L+E+               +   PT +  E+  N     DQ    PRRS 
Sbjct: 190  SKEVSGRKVELDEVTVPAPLLESSSSQKSVPVTPTPISEEVNDNDHETSDQVTTEPRRST 249

Query: 1235 RVIRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDSDKERWLKSMNQEW-SLCTPTLYG 1059
            RV   P  Y       V + D   D+P ++ + M   D  +WL++M  E  S+    ++ 
Sbjct: 250  RVRSAPEWYGN-PVLEVMLLD--HDEPTNYEEAMMSPDSAKWLEAMKSEMRSMYENKVWT 306

Query: 1058 FL*I-----RLKMSGIYKRKKCVDGKVETFKARLVAKGYTQKEGVDYEETFSPIAMLKSI 894
             + +      ++   I+KRK   D  V  +KAR+V KG      VDY+ETF P+AM KS+
Sbjct: 307  LVDLPDDRQAIENKWIFKRKTNADSSVTIYKARIVGKG------VDYDETFKPVAMHKSV 360

Query: 893  RILLSINACLDYEIWRMDVKTTFLNGQLDKEIYMQQP*GFVAEGQEQKVCKLLRSIYGLK 714
            R++L+I A  DYEIW+MDVKT FLNG + +E+YM QP GFV      KVCKL RSIYGL 
Sbjct: 361  RVMLAIAAFYDYEIWQMDVKTAFLNGFIKEELYMMQPEGFVDPKGANKVCKLQRSIYGLV 420

Query: 713  QASRSWNHRFDEMIKSWF*PKC**ALCIQADQ*W*SGNF------------SDLRR*HST 570
            QAS SWN RFD +IK++   +     CI       S  F            +D+    S 
Sbjct: 421  QASWSWNKRFDSVIKAFGFIQTFGEACIYKKVSGSSVAFLILYVDDILLIGNDIEFLDSI 480

Query: 569  N*E*SRNVSCG*RLVCQAIPNERFG*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*R 390
                +++ S            +  G A Y+LGI + ++   +L+ LSQ++Y+DK+    +
Sbjct: 481  KGYLNKSFSM-----------KDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFK 529

Query: 389  MQDSKKGYLPT*YGVVLSKEDCLKAPQEERT*DAFPMPLQVYNIVY 252
            M  +KKG+LP   GV LS        ++       P    + +I+Y
Sbjct: 530  MDQAKKGFLPVLQGVKLSTTQSPTTAEDREKMKVIPYASAIGSIMY 575



 Score = 64.3 bits (155), Expect = 2e-07
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
 Frame = -3

Query: 670 SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
           + GF Q+  E C+YK+++   VA           I N++E L ++KG+  K F MKDL +
Sbjct: 436 AFGFIQTFGEACIYKKVSGSSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGE 495

Query: 490 RIMFLEFEWFK--------ITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFP 335
               L  + ++        ++++ Y    K+L   +    K+  +P     +L      P
Sbjct: 496 AAYILGIKIYRDRSRRLIGLSQSTYLD--KVLKKFKMDQAKKGFLPVLQGVKLSTTQS-P 552

Query: 334 KRIV*RHLRRKEHETHSLCLYKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVKNLLKY 155
                R   +      ++    Y +LCTR  +  AI +  ++QSNP + H   VKN+LKY
Sbjct: 553 TTAEDREKMKVIPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTTVKNILKY 612


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  211 bits (538), Expect(2) = 1e-63
 Identities = 125/282 (44%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
 Frame = -2

Query: 1463 TRGGLFYDPQEKKVIVSTNAVFLENDYIENFRPRSKVVLEEL------LSDEIRPQPTR- 1305
            T+G  FY+ +E KV V+ + VFLE ++I      S V L+E+       S   +PQ  + 
Sbjct: 635  TKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQD 694

Query: 1304 VVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDS 1125
            VV ++ +    P       RRS R+ R P RY  +      +    +D+P ++ + M   
Sbjct: 695  VVQQVEQVVVEPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGP 754

Query: 1124 DKERWLKSM---------NQEWSLCTPTLYGFL*IRLKMSGIYKRKKCVDGKVETFKARL 972
            D E+WL +M         NQ W+L  P   G   I  K   I+K+   VDG V  + ARL
Sbjct: 755  DTEKWLGAMKSEIESMHVNQVWNLVDPP-DGVKAIECKW--IFKKMTDVDGTVHIYNARL 811

Query: 971  VAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACLDYEIWRMDVKTTFLNGQLDKEIYM 792
            VAKG+ Q +GVDY+ETFSP+AMLKSIRI+L+I A  DYEIW+MDVKT FLNG LD+++YM
Sbjct: 812  VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 871

Query: 791  QQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHRFDEMIKS 666
             QP GFV     +K+CKL +SIY LKQASRSWN RFDE++K+
Sbjct: 872  TQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKA 913



 Score = 61.6 bits (148), Expect(2) = 1e-63
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 13/185 (7%)
 Frame = -3

Query: 670  SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
            +LGF ++ +EPCVYK+I+   +            I N++ ML +VK      F MKDL +
Sbjct: 913  ALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGE 972

Query: 490  RIMFLEFEWFKITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPK----RIV 323
                L    ++          K LI +  S   + K+ +R   Q   + F P      + 
Sbjct: 973  AAYILGIRIYRDRS-------KRLIGLSQSTYID-KVLKRFNMQDSKKGFLPMSHGINLG 1024

Query: 322  *RHLRRKEHETHSLCL---------YKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVK 170
                 +   E + + +           Y +LCTRL + YA+  TS++QS+    H I VK
Sbjct: 1025 KNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVK 1084

Query: 169  NLLKY 155
            N+LKY
Sbjct: 1085 NILKY 1089



 Score = 62.8 bits (151), Expect = 9e-07
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
 Frame = -2

Query: 497  G*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLK 318
            G A Y+LGI + ++   +L+ LSQ++YIDK+     MQDSKKG+LP  +G+ L K  C +
Sbjct: 971  GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 1030

Query: 317  APQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNVSLDNSQEPSQICLRS-- 144
               E       P    + +I+Y A    R   +  +S  SR  S  +  E   I +++  
Sbjct: 1031 TTDERNKMSVIPYASAIGSIMY-AMLCTRLDVSYALSATSRYQS--DLGESHWIAVKNIL 1087

Query: 143  ----RCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGSVYIL 33
                R   + +V     +  ++  TD+ F +DKD  +S SG V+ L
Sbjct: 1088 KYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCL 1133


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  211 bits (538), Expect(2) = 1e-63
 Identities = 125/282 (44%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
 Frame = -2

Query: 1463 TRGGLFYDPQEKKVIVSTNAVFLENDYIENFRPRSKVVLEEL------LSDEIRPQPTR- 1305
            T+G  FY+ +E KV V+ + VFLE ++I      S V L+E+       S   +PQ  + 
Sbjct: 548  TKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQD 607

Query: 1304 VVGEITKNTTIPDQNVMTPRRSGRVIRPPIRYRQIEEANVAVFDGVDDDPLSFRQTMEDS 1125
            VV ++ +    P       RRS R+ R P RY  +      +    +D+P ++ + M   
Sbjct: 608  VVQQVEQVVVEPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGP 667

Query: 1124 DKERWLKSM---------NQEWSLCTPTLYGFL*IRLKMSGIYKRKKCVDGKVETFKARL 972
            D E+WL +M         NQ W+L  P   G   I  K   I+K+   VDG V  + ARL
Sbjct: 668  DTEKWLGAMKSEIESMHVNQVWNLVDPP-DGVKAIECKW--IFKKMTDVDGTVHIYNARL 724

Query: 971  VAKGYTQKEGVDYEETFSPIAMLKSIRILLSINACLDYEIWRMDVKTTFLNGQLDKEIYM 792
            VAKG+ Q +GVDY+ETFSP+AMLKSIRI+L+I A  DYEIW+MDVKT FLNG LD+++YM
Sbjct: 725  VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 784

Query: 791  QQP*GFVAEGQEQKVCKLLRSIYGLKQASRSWNHRFDEMIKS 666
             QP GFV     +K+CKL +SIY LKQASRSWN RFDE++K+
Sbjct: 785  TQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKA 826



 Score = 61.6 bits (148), Expect(2) = 1e-63
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 13/185 (7%)
 Frame = -3

Query: 670  SLGFDQSVDEPCVYKQINDGKVAXXXXXXXXXXXIENEVEMLAAVKGWFAKQFQMKDLDK 491
            +LGF ++ +EPCVYK+I+   +            I N++ ML +VK      F MKDL +
Sbjct: 826  ALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGE 885

Query: 490  RIMFLEFEWFKITRTNYWHCLKLLISIRCSCIKECKIPRRVTYQLDMESFFPK----RIV 323
                L    ++          K LI +  S   + K+ +R   Q   + F P      + 
Sbjct: 886  AAYILGIRIYRDRS-------KRLIGLSQSTYID-KVLKRFNMQDSKKGFLPMSHGINLG 937

Query: 322  *RHLRRKEHETHSLCL---------YKYTILCTRLGI*YAIGITSQFQSNPEMFH*IIVK 170
                 +   E + + +           Y +LCTRL + YA+  TS++QS+    H I VK
Sbjct: 938  KNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVK 997

Query: 169  NLLKY 155
            N+LKY
Sbjct: 998  NILKY 1002



 Score = 62.8 bits (151), Expect = 9e-07
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
 Frame = -2

Query: 497  G*ANYVLGI*MVQNHKNKLLALSQASYIDKMQLH*RMQDSKKGYLPT*YGVVLSKEDCLK 318
            G A Y+LGI + ++   +L+ LSQ++YIDK+     MQDSKKG+LP  +G+ L K  C +
Sbjct: 884  GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 943

Query: 317  APQEERT*DAFPMPLQVYNIVY*ARYLIRDRDNQPVSI*SRNVSLDNSQEPSQICLRS-- 144
               E       P    + +I+Y A    R   +  +S  SR  S  +  E   I +++  
Sbjct: 944  TTDERNKMSVIPYASAIGSIMY-AMLCTRLDVSYALSATSRYQS--DLGESHWIAVKNIL 1000

Query: 143  ----RCLSI*VV-----DRKIDDCTDSDF*SDKDTRKSISGSVYIL 33
                R   + +V     +  ++  TD+ F +DKD  +S SG V+ L
Sbjct: 1001 KYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCL 1046