BLASTX nr result
ID: Rehmannia27_contig00037256
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00037256
(544 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_015893764.1| PREDICTED: uncharacterized mitochondrial pro... 189 1e-58
gb|KYP43165.1| Retrovirus-related Pol polyprotein from transposo... 181 1e-52
gb|KYP39854.1| Retrovirus-related Pol polyprotein from transposo... 181 4e-52
gb|KYP39031.1| Retrovirus-related Pol polyprotein from transposo... 175 1e-51
gb|KYP76790.1| Retrovirus-related Pol polyprotein from transposo... 171 4e-51
gb|KYP77285.1| Retrovirus-related Pol polyprotein from transposo... 175 2e-50
gb|KYP75574.1| Retrovirus-related Pol polyprotein from transposo... 169 1e-49
gb|KYP46539.1| Retrovirus-related Pol polyprotein from transposo... 173 2e-49
gb|KYP65915.1| Retrovirus-related Pol polyprotein from transposo... 177 4e-49
gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo... 179 4e-49
gb|KYP44124.1| Retrovirus-related Pol polyprotein from transposo... 169 4e-49
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 172 1e-46
gb|KYP64150.1| Retrovirus-related Pol polyprotein from transposo... 167 2e-46
gb|KYP60991.1| Retrovirus-related Pol polyprotein from transposo... 169 2e-46
ref|XP_015878504.1| PREDICTED: uncharacterized mitochondrial pro... 157 2e-46
gb|KYP58378.1| Retrovirus-related Pol polyprotein from transposo... 169 4e-46
gb|KYP64079.1| Retrovirus-related Pol polyprotein from transposo... 159 2e-44
gb|KYP38949.1| Retrovirus-related Pol polyprotein from transposo... 158 2e-44
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 165 4e-44
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 165 5e-44
>ref|XP_015893764.1| PREDICTED: uncharacterized mitochondrial protein AtMg00820-like
[Ziziphus jujuba]
Length = 155
Score = 189 bits (479), Expect = 1e-58
Identities = 91/140 (65%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Frame = +2
Query: 128 ESPDDQESPVKKFRSLKDIYENCDVAFF-CEPRDFQEAAREQVWIDAMKEEINMIEKNKT 304
++ D ESP +K RSL DIYE+ ++AF CEP++F+EA +E +WI AM EEI IEK+ T
Sbjct: 2 DTSSDDESPPRKVRSLIDIYESTNMAFLACEPQNFEEAIKEDIWIKAMAEEIVTIEKHDT 61
Query: 305 WELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIE 484
WE VD KD+IGLKWIYKTK+ EDG+++KYKARLV KGYSQQPGIDFNETFAPVAR+E
Sbjct: 62 WEWVDPPEGKDIIGLKWIYKTKYKEDGTIQKYKARLVTKGYSQQPGIDFNETFAPVARME 121
Query: 485 TIRTALAIATNFELKVYQLD 544
TIRT L +A E+ VYQLD
Sbjct: 122 TIRTVLTLAAQMEVLVYQLD 141
>gb|KYP43165.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 411
Score = 181 bits (460), Expect = 1e-52
Identities = 91/179 (50%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Frame = +2
Query: 17 NEAPHLNAEFTE---PLSTQGVFQETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIY 187
N A + N E E P+S Q E T+ P + + + ES ++ RSL+DIY
Sbjct: 115 NAAWNWNDEKVEKNIPISIQQ--PEEETTEVPGEPHSPPQQQTPSPESTPRRVRSLEDIY 172
Query: 188 ENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKT 367
E C++A EP F+ A+++QVW+ AM+EEI MIEKN TW+LVD KD+IG+KW+YKT
Sbjct: 173 ETCNLAIL-EPESFEAASKQQVWVKAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKT 231
Query: 368 KFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
K N DG+++K+KARLVAKGYSQQPG+D+NETFAPVAR++TIR +A+A +YQLD
Sbjct: 232 KLNPDGTIQKHKARLVAKGYSQQPGVDYNETFAPVARLDTIRALIALAAEKGWNIYQLD 290
>gb|KYP39854.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 453
Score = 181 bits (459), Expect = 4e-52
Identities = 85/156 (54%), Positives = 114/156 (73%)
Frame = +2
Query: 77 QETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVW 256
Q++S +P+ + ES ++ RSL DIYE C++A EP F+EAA ++VW
Sbjct: 213 QQSSIVISPESPRIVPQQEESSLESTPRRVRSLVDIYETCNLAIL-EPGSFEEAANQEVW 271
Query: 257 IDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQ 436
+ AM+EEI MIEKN TWELVD KKD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQ
Sbjct: 272 VKAMEEEIKMIEKNNTWELVDYPYKKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQ 331
Query: 437 PGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
PG+D+NETFAPV R++TIR +A+A + +YQLD
Sbjct: 332 PGVDYNETFAPVTRLDTIRALIALAAHNGWNIYQLD 367
>gb|KYP39031.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 291
Score = 175 bits (444), Expect = 1e-51
Identities = 81/133 (60%), Positives = 107/133 (80%)
Frame = +2
Query: 146 ESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTWELVDLS 325
ES ++ RSL DIYE C++A EP F+EAA ++VW+ AM+EEI MIEKN TWELVD
Sbjct: 36 ESNPRQVRSLVDIYETCNLAIL-EPGSFEEAANQEVWVKAMEEEIKMIEKNNTWELVDFP 94
Query: 326 NKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIETIRTALA 505
+ KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQPG+D+NETFAPVAR++TIR +A
Sbjct: 95 HGKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQPGVDYNETFAPVARLDTIRALIA 154
Query: 506 IATNFELKVYQLD 544
+A + ++QLD
Sbjct: 155 LAAHKGWNIHQLD 167
>gb|KYP76790.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 203
Score = 171 bits (434), Expect = 4e-51
Identities = 80/155 (51%), Positives = 111/155 (71%)
Frame = +2
Query: 80 ETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWI 259
E T+ P + + + ES ++ RSL+DIYE ++A EP F+ A+++QVW+
Sbjct: 5 EEGTAEVPGEPHSPLQQQTPSLESTPRRVRSLEDIYETYNLAIL-EPESFEAASKQQVWV 63
Query: 260 DAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQP 439
AM+EEI MIEKN TW+LVD KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQP
Sbjct: 64 KAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQP 123
Query: 440 GIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
+D+NETF+PVAR++TIR +A+A +YQLD
Sbjct: 124 RVDYNETFSPVARLDTIRALIALAAEKGWNIYQLD 158
>gb|KYP77285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 386
Score = 175 bits (444), Expect = 2e-50
Identities = 88/179 (49%), Positives = 124/179 (69%), Gaps = 3/179 (1%)
Frame = +2
Query: 17 NEAPHLNAEFTE---PLSTQGVFQETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIY 187
N A + N E E P+S Q +E ST + S ++P + +P ++ RSL+DIY
Sbjct: 115 NAAWNWNDEKVEKNIPISIQQP-EEESTEVPSEPHSPPQQQTPSPESTP-RRVRSLEDIY 172
Query: 188 ENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKT 367
E C++A EP F+ +++QVW+ AM+EEI MIEKN W+LVD KD+IG+KW+YKT
Sbjct: 173 ETCNLAIL-EPESFEATSKQQVWVKAMEEEIKMIEKNNIWDLVDYPKDKDIIGVKWVYKT 231
Query: 368 KFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
K N DG+++K+KARLVAKGYSQQPG+D+NETFAP+AR++TIR +A+A ++QLD
Sbjct: 232 KLNLDGTIQKHKARLVAKGYSQQPGVDYNETFAPIARLDTIRALIALAAEKGWNIFQLD 290
>gb|KYP75574.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 256
Score = 169 bits (428), Expect = 1e-49
Identities = 78/126 (61%), Positives = 101/126 (80%)
Frame = +2
Query: 167 RSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIG 346
RSL DIYE C++ EP F+EAA ++VW++AM+EEI MIEKN TWELVD + KDVIG
Sbjct: 6 RSLVDIYETCNLVIL-EPGRFEEAANQEVWVEAMEEEIKMIEKNDTWELVDCPHGKDVIG 64
Query: 347 LKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFEL 526
+KW+YKTK N DG+++K+KARLVAKGYSQQPG+D+NE F+PVAR++TIR +A+A
Sbjct: 65 VKWVYKTKLNPDGTIQKHKARLVAKGYSQQPGVDYNERFSPVARLDTIRALIALAAQKGW 124
Query: 527 KVYQLD 544
+YQLD
Sbjct: 125 NIYQLD 130
>gb|KYP46539.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 409
Score = 173 bits (439), Expect = 2e-49
Identities = 80/149 (53%), Positives = 110/149 (73%)
Frame = +2
Query: 98 APQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEE 277
+P+ + ES ++ RSL DIYE C++A EP F+EA ++VW+ +++EE
Sbjct: 156 SPESPRIVPQQEESSPESTPRRVRSLVDIYETCNLAML-EPGSFEEAVDQEVWVKSVEEE 214
Query: 278 INMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNE 457
I MIEKN TWELVD + KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQPG+++NE
Sbjct: 215 IKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQPGVNYNE 274
Query: 458 TFAPVARIETIRTALAIATNFELKVYQLD 544
TFAPVAR++TIR +A+AT +YQLD
Sbjct: 275 TFAPVARLDTIRALIALATQKGWNIYQLD 303
>gb|KYP65915.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 177 bits (450), Expect = 4e-49
Identities = 81/155 (52%), Positives = 113/155 (72%)
Frame = +2
Query: 80 ETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWI 259
E T+ P + + + +S ++ RSL+DIYE C++A EP F+ A+++QVW+
Sbjct: 132 EEETTEVPGELHSPPQQQTPSPKSTPRRVRSLEDIYETCNLAIL-EPESFEAASKQQVWV 190
Query: 260 DAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQP 439
AM+EEI MIEKN TW+LVD KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQP
Sbjct: 191 KAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQP 250
Query: 440 GIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
G+D+NETFAPVAR++TIR +A+A ++QLD
Sbjct: 251 GVDYNETFAPVARLDTIRALIALAAEKGWNIFQLD 285
>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1120
Score = 179 bits (455), Expect = 4e-49
Identities = 83/149 (55%), Positives = 112/149 (75%)
Frame = +2
Query: 98 APQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEE 277
+P+ + ES ++ RSL DIYE C++A EP F+EAA ++VW+ AM+EE
Sbjct: 689 SPESPRIVPQQEESSPESTPRRVRSLVDIYETCNLAIL-EPGSFEEAANQEVWVKAMEEE 747
Query: 278 INMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNE 457
I MIEKN TWELVD + KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQ+PG+D+NE
Sbjct: 748 IKMIEKNNTWELVDFPHGKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQKPGVDYNE 807
Query: 458 TFAPVARIETIRTALAIATNFELKVYQLD 544
TFAPVAR++TIRT +A+A + +YQLD
Sbjct: 808 TFAPVARLDTIRTLIALAAHKGWNIYQLD 836
>gb|KYP44124.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 292
Score = 169 bits (428), Expect = 4e-49
Identities = 78/149 (52%), Positives = 108/149 (72%)
Frame = +2
Query: 98 APQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEE 277
+P+ + ES ++ RSL DIYE C++A EP F+EAA ++VW+ AM+EE
Sbjct: 21 SPESPRIVPQQEKSSPESTPRRVRSLVDIYETCNLAIL-EPGSFEEAANQEVWVKAMEEE 79
Query: 278 INMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNE 457
I +IEKN TWE VD + KD+IG+KW+YKTK N DG+++K+K RLVAKGYSQQPG+D+NE
Sbjct: 80 IKIIEKNNTWEPVDCPHGKDIIGVKWVYKTKLNPDGTIQKHKVRLVAKGYSQQPGVDYNE 139
Query: 458 TFAPVARIETIRTALAIATNFELKVYQLD 544
TFAPVA ++TIR +A+A + +YQL+
Sbjct: 140 TFAPVAHLDTIRALIALAAHKGWNIYQLN 168
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 172 bits (436), Expect = 1e-46
Identities = 85/176 (48%), Positives = 119/176 (67%)
Frame = +2
Query: 17 NEAPHLNAEFTEPLSTQGVFQETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENC 196
+E+ +E +P S Q T + S + S S +E+P +KFRSL+DIYE
Sbjct: 853 SESEMAQSEDQQP-SVQIPXSPTPSHSPSSPNLSXSSSSQSSEETPPRKFRSLRDIYETT 911
Query: 197 DVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFN 376
V F +P F+EA ++ W AMKEEI IEKN+TWELV+L K+VIG+KW+++TK+
Sbjct: 912 QVLFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYL 971
Query: 377 EDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
DGS++K+KARLVAKGY+QQ G+D+++TF+PVAR ET+RT LA+A + VYQ D
Sbjct: 972 ADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFD 1027
>gb|KYP64150.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 474
Score = 167 bits (422), Expect = 2e-46
Identities = 78/139 (56%), Positives = 105/139 (75%)
Frame = +2
Query: 128 ESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTW 307
E P + +P ++ RSL DIYE C++A EP F+E A ++VW+ AM+EEI MIEKN TW
Sbjct: 164 EEPSPESTP-RQVRSLVDIYETCNLAIL-EPGSFEETANQEVWVKAMEEEIKMIEKNNTW 221
Query: 308 ELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIET 487
ELV ++KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQ G+D+NETFAPVAR++T
Sbjct: 222 ELVYFPHEKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQLGVDYNETFAPVARLDT 281
Query: 488 IRTALAIATNFELKVYQLD 544
IR + + +YQLD
Sbjct: 282 IRALIDLVAQKGWNIYQLD 300
>gb|KYP60991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 612
Score = 169 bits (428), Expect = 2e-46
Identities = 80/145 (55%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
Frame = +2
Query: 98 APQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEE 277
+P+ + ES ++ RSL DIYE C++A EP F+EAA ++VW+ AM+EE
Sbjct: 232 SPESPRIVPQQEESSPESTPRRVRSLVDIYETCNLAIL-EPGSFEEAANQEVWVKAMEEE 290
Query: 278 INMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNE 457
I MIEKN TWELVD + KD+IG+KW+YKTK N DG+++K+KARLVAKGYSQQPG+D+NE
Sbjct: 291 IKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLNPDGTIQKHKARLVAKGYSQQPGVDYNE 350
Query: 458 TFAPVARIETIRTALA-IATNFELK 529
TFAPVAR++TIR + + TN +L+
Sbjct: 351 TFAPVARLDTIRALITPLVTNEKLQ 375
>ref|XP_015878504.1| PREDICTED: uncharacterized mitochondrial protein AtMg00820-like
[Ziziphus jujuba]
Length = 134
Score = 157 bits (396), Expect = 2e-46
Identities = 75/129 (58%), Positives = 103/129 (79%), Gaps = 2/129 (1%)
Frame = +2
Query: 134 PDDQ--ESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEEINMIEKNKTW 307
P+D +S ++ R L +IYE+C++ EP F+E+++ +VW+ +M+E+I MIEKNKTW
Sbjct: 7 PEDSSPKSTPRRTRLLIEIYESCNLTIV-EPGSFEESSKHEVWVKSMEEKIRMIEKNKTW 65
Query: 308 ELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETFAPVARIET 487
ELVDL + KDVIG+KWIYKT+ N DGS++K+KA+LVAKGYSQQ ID+NETFAPV R++T
Sbjct: 66 ELVDLPSNKDVIGVKWIYKTRLNSDGSIQKHKAQLVAKGYSQQFRIDYNETFAPVTRLDT 125
Query: 488 IRTALAIAT 514
IR LA+AT
Sbjct: 126 IRALLALAT 134
>gb|KYP58378.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 703
Score = 169 bits (429), Expect = 4e-46
Identities = 80/149 (53%), Positives = 109/149 (73%)
Frame = +2
Query: 98 APQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVWIDAMKEE 277
+P+ + + ES ++ RSL DIYE ++A EP F+EA ++VW+ AM+EE
Sbjct: 152 SPESSIIVPLQEESSPESTPRRVRSLVDIYETYNLAIL-EPGSFEEATNQEVWVKAMEEE 210
Query: 278 INMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNE 457
I MIEKN TWELVD + KD+IG+KW+YKTK N DG+++K+KARLVAKGY QQPG+D+NE
Sbjct: 211 IKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLNLDGTIQKHKARLVAKGYLQQPGVDYNE 270
Query: 458 TFAPVARIETIRTALAIATNFELKVYQLD 544
TFAPVAR+ETIR +A+A + +YQL+
Sbjct: 271 TFAPVARLETIRALIALAAHKGWNIYQLN 299
>gb|KYP64079.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 343
Score = 159 bits (401), Expect = 2e-44
Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
Frame = +2
Query: 50 EPLSTQGVFQETSTSSAPQKTSASSYESPDDQ--ESPVKKFRSLKDIYENCDVAFFCEPR 223
EP+ Q F + S QK + + DD + P++ R L +IYE C+VA EP
Sbjct: 122 EPI--QKDFPQWSWEEPIQKDFPENPQQLDDNTDDVPIRGTRPLSEIYEKCNVAVL-EPA 178
Query: 224 DFQEAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYK 403
+F+E ++ WI+AMKEE+ MIEKN TWELVD K+ IG KW+Y+TK N DGS+ K+K
Sbjct: 179 NFREVEKDDKWINAMKEELQMIEKNDTWELVDRPQHKNPIGFKWVYRTKLNADGSINKHK 238
Query: 404 ARLVAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
ARLV KGY+Q PG+DF+ETFAPVA ++TIR LA+ + +VY LD
Sbjct: 239 ARLVVKGYAQVPGVDFSETFAPVAHLDTIRLLLALTAHKGWRVYHLD 285
>gb|KYP38949.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 329
Score = 158 bits (400), Expect = 2e-44
Identities = 76/156 (48%), Positives = 109/156 (69%)
Frame = +2
Query: 77 QETSTSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENCDVAFFCEPRDFQEAAREQVW 256
+E +T + S ++P + +P ++ RSL DIYE ++A EP F+ A+++QVW
Sbjct: 141 EEETTEVLGEPHSPPQQQTPSLESTP-RRVRSLVDIYETYNLAIL-EPESFEAASKQQVW 198
Query: 257 IDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQ 436
+ AM+EEI MIEKN TW+LVD KD+IG+KW+YKTK N D +++K+KARLVAKGYSQQ
Sbjct: 199 VKAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKTKLNPDDTIQKHKARLVAKGYSQQ 258
Query: 437 PGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
PG+D+NETFA VA ++ IR +A+A +YQ +
Sbjct: 259 PGVDYNETFALVASLDIIRALIALAAQKGWNIYQTE 294
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 165 bits (418), Expect = 4e-44
Identities = 86/164 (52%), Positives = 113/164 (68%), Gaps = 11/164 (6%)
Frame = +2
Query: 86 STSSAPQKTSASSYESPDDQESPVKKFRSLKDIYENC------DVAFFC-----EPRDFQ 232
S+SSA +S SS E ES ++ RS+ ++ E+ + FC EP+ FQ
Sbjct: 791 SSSSASSDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQ 850
Query: 233 EAAREQVWIDAMKEEINMIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARL 412
EA + WI AM++EI+MIEKN TWELVD ++VIG+KW+YKTK N DGSV+KYKARL
Sbjct: 851 EAEKHDNWIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARL 910
Query: 413 VAKGYSQQPGIDFNETFAPVARIETIRTALAIATNFELKVYQLD 544
VAKG+ Q+PGID+ ET+APVAR+ETIRT +A+A K+YQLD
Sbjct: 911 VAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQKRWKIYQLD 954
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 165 bits (417), Expect = 5e-44
Identities = 97/207 (46%), Positives = 126/207 (60%), Gaps = 27/207 (13%)
Frame = +2
Query: 5 WKSPNEA-----PHLNAEFTEPL--STQGVFQETST---SSAPQKTSASSYESPDDQE-- 148
WKSP + P +P T GV TS+ SS +SASS SP +E
Sbjct: 671 WKSPEASSTPLLPTTTITLGQPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQI 730
Query: 149 ----SPVKKFRSLKDIYENC------DVAFFC-----EPRDFQEAAREQVWIDAMKEEIN 283
S ++ RS+ ++ E+ + FC EP+ FQEA + WI AM++EI+
Sbjct: 731 STPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIH 790
Query: 284 MIEKNKTWELVDLSNKKDVIGLKWIYKTKFNEDGSVKKYKARLVAKGYSQQPGIDFNETF 463
MIEKN TWELVD + VIG+KW+YKTK N DGSV+KYKARLVAKG+ Q+PGID+ ET+
Sbjct: 791 MIEKNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETY 850
Query: 464 APVARIETIRTALAIATNFELKVYQLD 544
APVAR+ETIRT +A+A K+YQLD
Sbjct: 851 APVARLETIRTIIALAAQKRWKIYQLD 877